0.008313 0.004799 0.000000 0.000000 0.009599 0.000000 0.000000 0.000000 0.012755 0.00000 0.00000 0.00000 Xiang, S. Carter, C.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 120.300 120.300 78.400 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N2 O5 242.229 3-DEAZACYTIDINE non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 N C N 76 N C N 77 N C N 78 N C N 79 N C N 80 N O N 81 N N N 82 R C N 83 R C N 84 N O N 85 S C N 86 R C N 87 N O N 88 N O N 89 N C N 90 N O N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N N N 106 R C N 107 N C N 108 N O N 109 N C N 110 N S N 111 N O N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N N N 120 S C N 121 N C N 122 N O N 123 N C N 124 N C N 125 N C N 126 N O N 127 N N N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N N N 140 S C N 141 N C N 142 N O N 143 N C N 144 N C N 145 N C N 146 N O N 147 N O N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 N C N 160 N C N 161 N O N 162 N O N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N N N 169 S C N 170 N C N 171 N O N 172 N C Y 173 N C Y 174 N N Y 175 N C Y 176 N C Y 177 N N N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N O N 190 N H N 191 N H N 192 N N N 193 S C N 194 N C N 195 N O N 196 S C N 197 N C N 198 N C N 199 N C N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N N N 215 S C N 216 N C N 217 N O N 218 N C N 219 N C N 220 N C N 221 N C N 222 N O N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C N 241 N C N 242 N C N 243 N C N 244 N N N 245 N O N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N N N 262 S C N 263 N C N 264 N O N 265 N C N 266 N C N 267 N S N 268 N C N 269 N O N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N N N 282 S C N 283 N C N 284 N O N 285 N C Y 286 N C Y 287 N C Y 288 N C Y 289 N C Y 290 N C Y 291 N C N 292 N O N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C N 309 N C N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C N 326 N O N 327 N O N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 R C N 340 N O N 341 N C N 342 N O N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N N N 353 S C N 354 N C N 355 N O N 356 N C Y 357 N C Y 358 N C Y 359 N C Y 360 N N Y 361 N C Y 362 N C Y 363 N C Y 364 N C Y 365 N C N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N N N 380 S C N 381 N C N 382 N O N 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N C N 390 N O N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C N 408 N C N 409 N C N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N doub N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing Y 172 N sing Y 173 N doub Y 174 N doub N 175 N sing Y 176 N sing N 177 N sing Y 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing Y 280 N doub Y 281 N sing Y 282 N sing N 283 N sing Y 284 N doub N 285 N sing Y 286 N doub N 287 N sing Y 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N doub N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub Y 354 N sing Y 355 N sing N 356 N sing Y 357 N sing Y 358 N doub N 359 N sing Y 360 N doub N 361 N sing Y 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N doub N 373 N sing N 374 N sing N 375 N sing N 376 N sing Y 377 N doub Y 378 N sing Y 379 N sing N 380 N sing Y 381 N doub N 382 N sing Y 383 N doub N 384 N sing Y 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N doub N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing US Biochemistry BICHAW 0033 0006-2960 35 1335 1341 10.1021/bi9525583 8634261 Cytidine deaminase complexed to 3-deazacytidine: a "valence buffer" in zinc enzyme catalysis. 1996 10.2210/pdb1aln/pdb pdb_00001aln 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 297 1 MIRRORS IMAGE PLATE 1993-09 RIGAKU RAXIS II NI FILTER M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH2R 31569.785 CYTIDINE DEAMINASE 3.5.4.5 1 man polymer 65.409 ZINC ION 1 syn non-polymer 242.229 3-DEAZACYTIDINE 1 syn non-polymer 18.015 water 49 nat water no no MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSATGLDEDALAFALLPLAAACARTPLSNFNVGAIARGV SGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDY LPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPL QGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCHSIDRVLLA MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSATGLDEDALAFALLPLAAACARTPLSNFNVGAIARGV SGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDY LPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPL QGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCHSIDRVLLA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample 562 Escherichia coli 562 Escherichia coli 1 5.187 76.289 6.2 pH 6.2 database_2 pdbx_database_status pdbx_initial_refinement_model struct_conn struct_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Derived calculations Version format compliance Other Database references Derived calculations Other Refinement description Data collection 1 0 1997-09-17 1 1 2008-03-24 1 2 2011-07-13 1 3 2016-09-28 1 4 2023-08-02 1 5 2024-05-22 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1997-06-02 REL REL ZN ZINC ION CTD 3-DEAZACYTIDINE HOH water 1CTU PDB ENTRY 1CTU PDB experimental model ZN 296 2 ZN ZN 296 A CTD 295 3 CTD CTD 295 A HOH 503 4 HOH HOH 503 A HOH 505 4 HOH HOH 505 A HOH 506 4 HOH HOH 506 A HOH 509 4 HOH HOH 509 A HOH 511 4 HOH HOH 511 A HOH 515 4 HOH HOH 515 A HOH 516 4 HOH HOH 516 A HOH 517 4 HOH HOH 517 A HOH 518 4 HOH HOH 518 A HOH 522 4 HOH HOH 522 A HOH 525 4 HOH HOH 525 A HOH 526 4 HOH HOH 526 A HOH 527 4 HOH HOH 527 A HOH 528 4 HOH HOH 528 A HOH 531 4 HOH HOH 531 A HOH 533 4 HOH HOH 533 A HOH 536 4 HOH HOH 536 A HOH 538 4 HOH HOH 538 A HOH 539 4 HOH HOH 539 A HOH 540 4 HOH HOH 540 A HOH 541 4 HOH HOH 541 A HOH 542 4 HOH HOH 542 A HOH 550 4 HOH HOH 550 A HOH 555 4 HOH HOH 555 A HOH 557 4 HOH HOH 557 A HOH 558 4 HOH HOH 558 A HOH 560 4 HOH HOH 560 A HOH 561 4 HOH HOH 561 A HOH 562 4 HOH HOH 562 A HOH 563 4 HOH HOH 563 A HOH 564 4 HOH HOH 564 A HOH 565 4 HOH HOH 565 A HOH 566 4 HOH HOH 566 A HOH 568 4 HOH HOH 568 A HOH 569 4 HOH HOH 569 A HOH 573 4 HOH HOH 573 A HOH 575 4 HOH HOH 575 A HOH 601 4 HOH HOH 601 A HOH 602 4 HOH HOH 602 A HOH 603 4 HOH HOH 603 A HOH 604 4 HOH HOH 604 A HOH 605 4 HOH HOH 605 A HOH 607 4 HOH HOH 607 A HOH 610 4 HOH HOH 610 A HOH 611 4 HOH HOH 611 A HOH 613 4 HOH HOH 613 A HOH 615 4 HOH HOH 615 A HOH 616 4 HOH HOH 616 A HOH 700 4 HOH HOH 700 A MET 1 n 1 MET 1 A HIS 2 n 2 HIS 2 A PRO 3 n 3 PRO 3 A ARG 4 n 4 ARG 4 A PHE 5 n 5 PHE 5 A GLN 6 n 6 GLN 6 A THR 7 n 7 THR 7 A ALA 8 n 8 ALA 8 A PHE 9 n 9 PHE 9 A ALA 10 n 10 ALA 10 A GLN 11 n 11 GLN 11 A LEU 12 n 12 LEU 12 A ALA 13 n 13 ALA 13 A ASP 14 n 14 ASP 14 A ASN 15 n 15 ASN 15 A LEU 16 n 16 LEU 16 A GLN 17 n 17 GLN 17 A SER 18 n 18 SER 18 A ALA 19 n 19 ALA 19 A LEU 20 n 20 LEU 20 A GLU 21 n 21 GLU 21 A PRO 22 n 22 PRO 22 A ILE 23 n 23 ILE 23 A LEU 24 n 24 LEU 24 A ALA 25 n 25 ALA 25 A ASP 26 n 26 ASP 26 A LYS 27 n 27 LYS 27 A TYR 28 n 28 TYR 28 A PHE 29 n 29 PHE 29 A PRO 30 n 30 PRO 30 A ALA 31 n 31 ALA 31 A LEU 32 n 32 LEU 32 A LEU 33 n 33 LEU 33 A THR 34 n 34 THR 34 A GLY 35 n 35 GLY 35 A GLU 36 n 36 GLU 36 A GLN 37 n 37 GLN 37 A VAL 38 n 38 VAL 38 A SER 39 n 39 SER 39 A SER 40 n 40 SER 40 A LEU 41 n 41 LEU 41 A LYS 42 n 42 LYS 42 A SER 43 n 43 SER 43 A ALA 44 n 44 ALA 44 A THR 45 n 45 THR 45 A GLY 46 n 46 GLY 46 A LEU 47 n 47 LEU 47 A ASP 48 n 48 ASP 48 A GLU 49 n 49 GLU 49 A ASP 50 n 50 ASP 50 A ALA 51 n 51 ALA 51 A LEU 52 n 52 LEU 52 A ALA 53 n 53 ALA 53 A PHE 54 n 54 PHE 54 A ALA 55 n 55 ALA 55 A LEU 56 n 56 LEU 56 A LEU 57 n 57 LEU 57 A PRO 58 n 58 PRO 58 A LEU 59 n 59 LEU 59 A ALA 60 n 60 ALA 60 A ALA 61 n 61 ALA 61 A ALA 62 n 62 ALA 62 A CYS 63 n 63 CYS 63 A ALA 64 n 64 ALA 64 A ARG 65 n 65 ARG 65 A THR 66 n 66 THR 66 A PRO 67 n 67 PRO 67 A LEU 68 n 68 LEU 68 A SER 69 n 69 SER 69 A ASN 70 n 70 ASN 70 A PHE 71 n 71 PHE 71 A ASN 72 n 72 ASN 72 A VAL 73 n 73 VAL 73 A GLY 74 n 74 GLY 74 A ALA 75 n 75 ALA 75 A ILE 76 n 76 ILE 76 A ALA 77 n 77 ALA 77 A ARG 78 n 78 ARG 78 A GLY 79 n 79 GLY 79 A VAL 80 n 80 VAL 80 A SER 81 n 81 SER 81 A GLY 82 n 82 GLY 82 A THR 83 n 83 THR 83 A TRP 84 n 84 TRP 84 A TYR 85 n 85 TYR 85 A PHE 86 n 86 PHE 86 A GLY 87 n 87 GLY 87 A ALA 88 n 88 ALA 88 A ASN 89 n 89 ASN 89 A MET 90 n 90 MET 90 A GLU 91 n 91 GLU 91 A PHE 92 n 92 PHE 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A ALA 95 n 95 ALA 95 A THR 96 n 96 THR 96 A MET 97 n 97 MET 97 A GLN 98 n 98 GLN 98 A GLN 99 n 99 GLN 99 A THR 100 n 100 THR 100 A VAL 101 n 101 VAL 101 A HIS 102 n 102 HIS 102 A ALA 103 n 103 ALA 103 A GLU 104 n 104 GLU 104 A GLN 105 n 105 GLN 105 A SER 106 n 106 SER 106 A ALA 107 n 107 ALA 107 A ILE 108 n 108 ILE 108 A SER 109 n 109 SER 109 A HIS 110 n 110 HIS 110 A ALA 111 n 111 ALA 111 A TRP 112 n 112 TRP 112 A LEU 113 n 113 LEU 113 A SER 114 n 114 SER 114 A GLY 115 n 115 GLY 115 A GLU 116 n 116 GLU 116 A LYS 117 n 117 LYS 117 A ALA 118 n 118 ALA 118 A LEU 119 n 119 LEU 119 A ALA 120 n 120 ALA 120 A ALA 121 n 121 ALA 121 A ILE 122 n 122 ILE 122 A THR 123 n 123 THR 123 A VAL 124 n 124 VAL 124 A ASN 125 n 125 ASN 125 A TYR 126 n 126 TYR 126 A THR 127 n 127 THR 127 A PRO 128 n 128 PRO 128 A CYS 129 n 129 CYS 129 A GLY 130 n 130 GLY 130 A HIS 131 n 131 HIS 131 A CYS 132 n 132 CYS 132 A ARG 133 n 133 ARG 133 A GLN 134 n 134 GLN 134 A PHE 135 n 135 PHE 135 A MET 136 n 136 MET 136 A ASN 137 n 137 ASN 137 A GLU 138 n 138 GLU 138 A LEU 139 n 139 LEU 139 A ASN 140 n 140 ASN 140 A SER 141 n 141 SER 141 A GLY 142 n 142 GLY 142 A LEU 143 n 143 LEU 143 A ASP 144 n 144 ASP 144 A LEU 145 n 145 LEU 145 A ARG 146 n 146 ARG 146 A ILE 147 n 147 ILE 147 A HIS 148 n 148 HIS 148 A LEU 149 n 149 LEU 149 A PRO 150 n 150 PRO 150 A GLY 151 n 151 GLY 151 A ARG 152 n 152 ARG 152 A GLU 153 n 153 GLU 153 A ALA 154 n 154 ALA 154 A HIS 155 n 155 HIS 155 A ALA 156 n 156 ALA 156 A LEU 157 n 157 LEU 157 A ARG 158 n 158 ARG 158 A ASP 159 n 159 ASP 159 A TYR 160 n 160 TYR 160 A LEU 161 n 161 LEU 161 A PRO 162 n 162 PRO 162 A ASP 163 n 163 ASP 163 A ALA 164 n 164 ALA 164 A PHE 165 n 165 PHE 165 A GLY 166 n 166 GLY 166 A PRO 167 n 167 PRO 167 A LYS 168 n 168 LYS 168 A ASP 169 n 169 ASP 169 A LEU 170 n 170 LEU 170 A GLU 171 n 171 GLU 171 A ILE 172 n 172 ILE 172 A LYS 173 n 173 LYS 173 A THR 174 n 174 THR 174 A LEU 175 n 175 LEU 175 A LEU 176 n 176 LEU 176 A MET 177 n 177 MET 177 A ASP 178 n 178 ASP 178 A GLU 179 n 179 GLU 179 A GLN 180 n 180 GLN 180 A ASP 181 n 181 ASP 181 A HIS 182 n 182 HIS 182 A GLY 183 n 183 GLY 183 A TYR 184 n 184 TYR 184 A ALA 185 n 185 ALA 185 A LEU 186 n 186 LEU 186 A THR 187 n 187 THR 187 A GLY 188 n 188 GLY 188 A ASP 189 n 189 ASP 189 A ALA 190 n 190 ALA 190 A LEU 191 n 191 LEU 191 A SER 192 n 192 SER 192 A GLN 193 n 193 GLN 193 A ALA 194 n 194 ALA 194 A ALA 195 n 195 ALA 195 A ILE 196 n 196 ILE 196 A ALA 197 n 197 ALA 197 A ALA 198 n 198 ALA 198 A ALA 199 n 199 ALA 199 A ASN 200 n 200 ASN 200 A ARG 201 n 201 ARG 201 A SER 202 n 202 SER 202 A HIS 203 n 203 HIS 203 A MET 204 n 204 MET 204 A PRO 205 n 205 PRO 205 A TYR 206 n 206 TYR 206 A SER 207 n 207 SER 207 A LYS 208 n 208 LYS 208 A SER 209 n 209 SER 209 A PRO 210 n 210 PRO 210 A SER 211 n 211 SER 211 A GLY 212 n 212 GLY 212 A VAL 213 n 213 VAL 213 A ALA 214 n 214 ALA 214 A LEU 215 n 215 LEU 215 A GLU 216 n 216 GLU 216 A CYS 217 n 217 CYS 217 A LYS 218 n 218 LYS 218 A ASP 219 n 219 ASP 219 A GLY 220 n 220 GLY 220 A ARG 221 n 221 ARG 221 A ILE 222 n 222 ILE 222 A PHE 223 n 223 PHE 223 A SER 224 n 224 SER 224 A GLY 225 n 225 GLY 225 A SER 226 n 226 SER 226 A TYR 227 n 227 TYR 227 A ALA 228 n 228 ALA 228 A GLU 229 n 229 GLU 229 A ASN 230 n 230 ASN 230 A ALA 231 n 231 ALA 231 A ALA 232 n 232 ALA 232 A PHE 233 n 233 PHE 233 A ASN 234 n 234 ASN 234 A PRO 235 n 235 PRO 235 A THR 236 n 236 THR 236 A LEU 237 n 237 LEU 237 A PRO 238 n 238 PRO 238 A PRO 239 n 239 PRO 239 A LEU 240 n 240 LEU 240 A GLN 241 n 241 GLN 241 A GLY 242 n 242 GLY 242 A ALA 243 n 243 ALA 243 A LEU 244 n 244 LEU 244 A ILE 245 n 245 ILE 245 A LEU 246 n 246 LEU 246 A LEU 247 n 247 LEU 247 A ASN 248 n 248 ASN 248 A LEU 249 n 249 LEU 249 A LYS 250 n 250 LYS 250 A GLY 251 n 251 GLY 251 A TYR 252 n 252 TYR 252 A ASP 253 n 253 ASP 253 A TYR 254 n 254 TYR 254 A PRO 255 n 255 PRO 255 A ASP 256 n 256 ASP 256 A ILE 257 n 257 ILE 257 A GLN 258 n 258 GLN 258 A ARG 259 n 259 ARG 259 A ALA 260 n 260 ALA 260 A VAL 261 n 261 VAL 261 A LEU 262 n 262 LEU 262 A ALA 263 n 263 ALA 263 A GLU 264 n 264 GLU 264 A LYS 265 n 265 LYS 265 A ALA 266 n 266 ALA 266 A ASP 267 n 267 ASP 267 A ALA 268 n 268 ALA 268 A PRO 269 n 269 PRO 269 A LEU 270 n 270 LEU 270 A ILE 271 n 271 ILE 271 A GLN 272 n 272 GLN 272 A TRP 273 n 273 TRP 273 A ASP 274 n 274 ASP 274 A ALA 275 n 275 ALA 275 A THR 276 n 276 THR 276 A SER 277 n 277 SER 277 A ALA 278 n 278 ALA 278 A THR 279 n 279 THR 279 A LEU 280 n 280 LEU 280 A LYS 281 n 281 LYS 281 A ALA 282 n 282 ALA 282 A LEU 283 n 283 LEU 283 A GLY 284 n 284 GLY 284 A CYS 285 n 285 CYS 285 A HIS 286 n 286 HIS 286 A SER 287 n 287 SER 287 A ILE 288 n 288 ILE 288 A ASP 289 n 289 ASP 289 A ARG 290 n 290 ARG 290 A VAL 291 n 291 VAL 291 A LEU 292 n 292 LEU 292 A LEU 293 n 293 LEU 293 A ALA 294 n 294 ALA 294 A author_and_software_defined_assembly PISA,PQS 2 dimeric 5390 -98 19280 A HIS 102 A ND1 HIS 102 1_555 A ZN 296 B ZN ZN 1_555 A CYS 129 A SG CYS 129 1_555 103.3 A HIS 102 A ND1 HIS 102 1_555 A ZN 296 B ZN ZN 1_555 A CYS 132 A SG CYS 132 1_555 113.2 A CYS 129 A SG CYS 129 1_555 A ZN 296 B ZN ZN 1_555 A CYS 132 A SG CYS 132 1_555 107.4 A HIS 102 A ND1 HIS 102 1_555 A ZN 296 B ZN ZN 1_555 A HOH 700 D O HOH 1_555 113.7 A CYS 129 A SG CYS 129 1_555 A ZN 296 B ZN ZN 1_555 A HOH 700 D O HOH 1_555 104.3 A CYS 132 A SG CYS 132 1_555 A ZN 296 B ZN ZN 1_555 A HOH 700 D O HOH 1_555 113.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 85 A O TYR 85 A N ALA 77 A N ALA 77 A O ILE 76 A O ILE 76 A N THR 123 A N THR 123 A O ILE 122 A O ILE 122 A N ARG 146 A N ARG 146 A O PHE 223 A O PHE 223 A N LEU 215 A N LEU 215 A O GLY 212 A O GLY 212 A N ALA 263 A N ALA 263 A O ALA 260 A O ALA 260 A N ASP 289 A N ASP 289 1 -4.95 0.50 120.30 115.35 A A A NE CZ NH2 ARG ARG ARG 65 65 65 N 1 -4.50 0.50 120.30 115.80 A A A NE CZ NH2 ARG ARG ARG 78 78 78 N 1 5.78 0.80 106.30 112.08 A A A CD1 CG CD2 TRP TRP TRP 84 84 84 N 1 -5.10 0.80 107.30 102.20 A A A CE2 CD2 CG TRP TRP TRP 84 84 84 N 1 5.75 0.80 106.30 112.05 A A A CD1 CG CD2 TRP TRP TRP 112 112 112 N 1 -4.97 0.80 107.30 102.33 A A A CE2 CD2 CG TRP TRP TRP 112 112 112 N 1 3.33 0.50 120.30 123.63 A A A NE CZ NH1 ARG ARG ARG 201 201 201 N 1 6.64 0.80 106.30 112.94 A A A CD1 CG CD2 TRP TRP TRP 273 273 273 N 1 -6.14 0.80 107.30 101.16 A A A CE2 CD2 CG TRP TRP TRP 273 273 273 N 1 A A NE2 CD2 HIS HIS 2 2 -0.070 0.011 1.373 1.303 N 1 A A NE2 CD2 HIS HIS 148 148 -0.074 0.011 1.373 1.299 N 1 A A NE2 CD2 HIS HIS 155 155 -0.069 0.011 1.373 1.304 N 1 A A NE2 CD2 HIS HIS 182 182 -0.082 0.011 1.373 1.291 N 1 A A NE2 CD2 HIS HIS 286 286 -0.067 0.011 1.373 1.306 N 1 A PRO 30 -77.70 20.99 1 A ALA 95 -101.86 -146.63 1 A MET 177 86.21 1.91 1 A MET 204 -141.62 49.43 1 A PHE 233 57.34 -69.06 PARAM19X.PRO1 TOPH19X.PRO PARAM_SX.DAC TOPH_SX.DAC PARAMCDA_SX.ZN3 TOPHCDA.ZN3 PARAM_SX.WAT1 TOPH_SX.WAT 0.1900000 0.1900000 2.3 7.0 27432 90.3 10000000.0 0.001 1 2.0 MOLECULAR REPLACEMENT PDB ENTRY 1CTU 2.3 7.0 49 2287 18 0 2220 0.008 1.8 2.3 20.0 1ALN 27432 1. 0.0650000 1 16. 4.5 90.3 2.30 2.50 2.8 1 83. model building X-PLOR 3.0 refinement X-PLOR 3.0 data reduction DENZO data scaling SCALEPACK phasing X-PLOR 3.0 CRYSTAL STRUCTURE OF CYTIDINE DEAMINASE COMPLEXED WITH 3-DEAZACYTIDINE 1 N N 2 N N 3 N N 4 N N A PRO 3 A PRO 3 HELX_P A GLN 11 A GLN 11 5 1 9 A ASP 14 A ASP 14 HELX_P A GLU 21 A GLU 21 1 2 8 A ILE 23 A ILE 23 HELX_P A ALA 25 A ALA 25 5 3 3 A GLY 35 A GLY 35 HELX_P A THR 45 A THR 45 1 4 11 A GLU 49 A GLU 49 HELX_P A CYS 63 A CYS 63 1 5 15 A MET 97 A MET 97 HELX_P A GLN 99 A GLN 99 5 6 3 A ALA 103 A ALA 103 HELX_P A LEU 113 A LEU 113 1 7 11 A GLY 130 A GLY 130 HELX_P A GLU 138 A GLU 138 1 8 9 A GLY 142 A GLY 142 HELX_P A ASP 144 A ASP 144 5 9 3 A LEU 157 A LEU 157 HELX_P A TYR 160 A TYR 160 1 10 4 A PRO 167 A PRO 167 HELX_P A LEU 170 A LEU 170 5 11 4 A ALA 190 A ALA 190 HELX_P A ARG 201 A ARG 201 1 12 12 A PRO 239 A PRO 239 HELX_P A LEU 249 A LEU 249 1 13 11 A TYR 254 A TYR 254 HELX_P A ASP 256 A ASP 256 5 14 3 A TRP 273 A TRP 273 HELX_P A LEU 283 A LEU 283 1 15 11 metalc 2.384 A HIS 102 A ND1 HIS 102 1_555 A ZN 296 B ZN ZN 1_555 metalc 2.395 A CYS 129 A SG CYS 129 1_555 A ZN 296 B ZN ZN 1_555 metalc 2.180 A CYS 132 A SG CYS 132 1_555 A ZN 296 B ZN ZN 1_555 metalc 2.083 A ZN 296 B ZN ZN 1_555 A HOH 700 D O HOH 1_555 HYDROLASE CYTIDINE DEAMINASE, VALENCE BUFFER, ZINC ENZYME, SUBSTRATE, HYDROLASE CDD_ECOLI UNP 1 1 P0ABF6 MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSATGLDEDALAFALLPLAAACARTPLSNFNVGAIARGV SGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDY LPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPL QGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCHSIDRVLLA 1 294 1ALN 1 294 P0ABF6 A 1 1 294 4 4 anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel A TRP 84 A TRP 84 A ALA 88 A ALA 88 A GLY 74 A GLY 74 A GLY 79 A GLY 79 A LEU 119 A LEU 119 A VAL 124 A VAL 124 A ARG 146 A ARG 146 A LEU 149 A LEU 149 A ILE 222 A ILE 222 A SER 226 A SER 226 A SER 211 A SER 211 A CYS 217 A CYS 217 A ILE 257 A ILE 257 A GLU 264 A GLU 264 A ILE 288 A ILE 288 A LEU 292 A LEU 292 ZN BINDING SITE. Unknown 4 BINDING SITE FOR RESIDUE ZN A 296 A ZN 296 Software 4 BINDING SITE FOR RESIDUE CTD A 295 A CTD 295 Software 14 A HIS 102 A HIS 102 4 1_555 A CYS 129 A CYS 129 4 1_555 A CYS 132 A CYS 132 4 1_555 A CTD 295 C CTD 4 1_555 A HIS 102 A HIS 102 4 1_555 A CYS 129 A CYS 129 4 1_555 A CYS 132 A CYS 132 4 1_555 A HOH 700 D HOH 4 1_555 A PHE 71 A PHE 71 14 1_555 A VAL 73 A VAL 73 14 1_555 A ASN 89 A ASN 89 14 1_555 A GLU 91 A GLU 91 14 1_555 A THR 100 A THR 100 14 1_555 A VAL 101 A VAL 101 14 1_555 A HIS 102 A HIS 102 14 1_555 A ALA 103 A ALA 103 14 1_555 A GLU 104 A GLU 104 14 1_555 A TYR 126 A TYR 126 14 1_555 A THR 127 A THR 127 14 1_555 A PHE 165 A PHE 165 14 4_555 A ALA 231 A ALA 231 14 4_555 A HOH 700 D HOH 14 1_555 152 P 31 2 1