0.012958 0.007482 0.000000 0.000000 0.014963 0.000000 0.000000 0.000000 0.011055 0.00000 0.00000 0.00000 Karpusas, M. Hsu, Y.M. Thomas, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 9 90.00 90.00 120.00 77.170 77.170 90.460 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing UK Structure STRUE6 2005 0969-2126 3 1031 1039 10.1016/S0969-2126(01)00239-8 8589998 2 A crystal structure of an extracellular fragment of human CD40 ligand. 1995 UK Structure STRUE6 2005 0969-2126 3 1426 Erratum. 2 A Crystal Structure of an Extracellular Fragment of Human Cd40 Ligand 1995 10.2210/pdb1aly/pdb pdb_00001aly 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 123 1 MIRRORS AREA DETECTOR 1994-01-11 SIEMENS GRAPHITE(002) M x-ray 1 1.5418 1.0 1.5418 15812.817 CD40 LIGAND EXTRACELLULAR DOMAIN FRAGMENT 1 man polymer 18.015 water 64 nat water no no GDQNPQIAAHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCL KSPGRFERILLRAANTHSSAKPCGQQSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGLLKL GDQNPQIAAHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCL KSPGRFERILLRAANTHSSAKPCGQQSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGLLKL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo BLOOD Pichia sample T-LYMPHOCYTE PICHIA PASTORIS MEMBRANE 9606 Homo sapiens 4922 Pichia pastoris 1 2.97 62.46 7.5 PROTEIN WAS CRYSTALLIZED FROM 1.4 M NA CITRATE, 50 MM HEPES PH 7.5 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Refinement description 1 0 1997-09-17 1 1 2008-03-24 1 2 2011-07-13 1 3 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession Y BNL 1997-06-05 REL HOH water ma-cem76 ENTRY 1CDA that was moved from PDB to ModelArchive ModelArchive in silico model HOH 501 2 HOH HOH 501 A HOH 502 2 HOH HOH 502 A HOH 503 2 HOH HOH 503 A HOH 504 2 HOH HOH 504 A HOH 505 2 HOH HOH 505 A HOH 506 2 HOH HOH 506 A HOH 507 2 HOH HOH 507 A HOH 508 2 HOH HOH 508 A HOH 509 2 HOH HOH 509 A HOH 510 2 HOH HOH 510 A HOH 511 2 HOH HOH 511 A HOH 512 2 HOH HOH 512 A HOH 513 2 HOH HOH 513 A HOH 514 2 HOH HOH 514 A HOH 515 2 HOH HOH 515 A HOH 516 2 HOH HOH 516 A HOH 517 2 HOH HOH 517 A HOH 518 2 HOH HOH 518 A HOH 519 2 HOH HOH 519 A HOH 520 2 HOH HOH 520 A HOH 521 2 HOH HOH 521 A HOH 522 2 HOH HOH 522 A HOH 523 2 HOH HOH 523 A HOH 524 2 HOH HOH 524 A HOH 525 2 HOH HOH 525 A HOH 526 2 HOH HOH 526 A HOH 527 2 HOH HOH 527 A HOH 528 2 HOH HOH 528 A HOH 529 2 HOH HOH 529 A HOH 530 2 HOH HOH 530 A HOH 531 2 HOH HOH 531 A HOH 532 2 HOH HOH 532 A HOH 533 2 HOH HOH 533 A HOH 534 2 HOH HOH 534 A HOH 536 2 HOH HOH 536 A HOH 537 2 HOH HOH 537 A HOH 538 2 HOH HOH 538 A HOH 539 2 HOH HOH 539 A HOH 540 2 HOH HOH 540 A HOH 541 2 HOH HOH 541 A HOH 542 2 HOH HOH 542 A HOH 543 2 HOH HOH 543 A HOH 544 2 HOH HOH 544 A HOH 545 2 HOH HOH 545 A HOH 546 2 HOH HOH 546 A HOH 547 2 HOH HOH 547 A HOH 548 2 HOH HOH 548 A HOH 549 2 HOH HOH 549 A HOH 550 2 HOH HOH 550 A HOH 551 2 HOH HOH 551 A HOH 552 2 HOH HOH 552 A HOH 553 2 HOH HOH 553 A HOH 554 2 HOH HOH 554 A HOH 555 2 HOH HOH 555 A HOH 556 2 HOH HOH 556 A HOH 557 2 HOH HOH 557 A HOH 558 2 HOH HOH 558 A HOH 559 2 HOH HOH 559 A HOH 560 2 HOH HOH 560 A HOH 561 2 HOH HOH 561 A HOH 562 2 HOH HOH 562 A HOH 563 2 HOH HOH 563 A HOH 564 2 HOH HOH 564 A HOH 565 2 HOH HOH 565 A GLY 116 n 1 GLY 116 A ASP 117 n 2 ASP 117 A GLN 118 n 3 GLN 118 A ASN 119 n 4 ASN 119 A PRO 120 n 5 PRO 120 A GLN 121 n 6 GLN 121 A ILE 122 n 7 ILE 122 A ALA 123 n 8 ALA 123 A ALA 124 n 9 ALA 124 A HIS 125 n 10 HIS 125 A VAL 126 n 11 VAL 126 A ILE 127 n 12 ILE 127 A SER 128 n 13 SER 128 A GLU 129 n 14 GLU 129 A ALA 130 n 15 ALA 130 A SER 131 n 16 SER 131 A SER 132 n 17 SER 132 A LYS 133 n 18 LYS 133 A THR 134 n 19 THR 134 A THR 135 n 20 THR 135 A SER 136 n 21 SER 136 A VAL 137 n 22 VAL 137 A LEU 138 n 23 LEU 138 A GLN 139 n 24 GLN 139 A TRP 140 n 25 TRP 140 A ALA 141 n 26 ALA 141 A GLU 142 n 27 GLU 142 A LYS 143 n 28 LYS 143 A GLY 144 n 29 GLY 144 A TYR 145 n 30 TYR 145 A TYR 146 n 31 TYR 146 A THR 147 n 32 THR 147 A MET 148 n 33 MET 148 A SER 149 n 34 SER 149 A ASN 150 n 35 ASN 150 A ASN 151 n 36 ASN 151 A LEU 152 n 37 LEU 152 A VAL 153 n 38 VAL 153 A THR 154 n 39 THR 154 A LEU 155 n 40 LEU 155 A GLU 156 n 41 GLU 156 A ASN 157 n 42 ASN 157 A GLY 158 n 43 GLY 158 A LYS 159 n 44 LYS 159 A GLN 160 n 45 GLN 160 A LEU 161 n 46 LEU 161 A THR 162 n 47 THR 162 A VAL 163 n 48 VAL 163 A LYS 164 n 49 LYS 164 A ARG 165 n 50 ARG 165 A GLN 166 n 51 GLN 166 A GLY 167 n 52 GLY 167 A LEU 168 n 53 LEU 168 A TYR 169 n 54 TYR 169 A TYR 170 n 55 TYR 170 A ILE 171 n 56 ILE 171 A TYR 172 n 57 TYR 172 A ALA 173 n 58 ALA 173 A GLN 174 n 59 GLN 174 A VAL 175 n 60 VAL 175 A THR 176 n 61 THR 176 A PHE 177 n 62 PHE 177 A CYS 178 n 63 CYS 178 A SER 179 n 64 SER 179 A ASN 180 n 65 ASN 180 A ARG 181 n 66 ARG 181 A GLU 182 n 67 GLU 182 A ALA 183 n 68 ALA 183 A SER 184 n 69 SER 184 A SER 185 n 70 SER 185 A GLN 186 n 71 GLN 186 A ALA 187 n 72 ALA 187 A PRO 188 n 73 PRO 188 A PHE 189 n 74 PHE 189 A ILE 190 n 75 ILE 190 A ALA 191 n 76 ALA 191 A SER 192 n 77 SER 192 A LEU 193 n 78 LEU 193 A CYS 194 n 79 CYS 194 A LEU 195 n 80 LEU 195 A LYS 196 n 81 LYS 196 A SER 197 n 82 SER 197 A PRO 198 n 83 PRO 198 A GLY 199 n 84 GLY 199 A ARG 200 n 85 ARG 200 A PHE 201 n 86 PHE 201 A GLU 202 n 87 GLU 202 A ARG 203 n 88 ARG 203 A ILE 204 n 89 ILE 204 A LEU 205 n 90 LEU 205 A LEU 206 n 91 LEU 206 A ARG 207 n 92 ARG 207 A ALA 208 n 93 ALA 208 A ALA 209 n 94 ALA 209 A ASN 210 n 95 ASN 210 A THR 211 n 96 THR 211 A HIS 212 n 97 HIS 212 A SER 213 n 98 SER 213 A SER 214 n 99 SER 214 A ALA 215 n 100 ALA 215 A LYS 216 n 101 LYS 216 A PRO 217 n 102 PRO 217 A CYS 218 n 103 CYS 218 A GLY 219 n 104 GLY 219 A GLN 220 n 105 GLN 220 A GLN 221 n 106 GLN 221 A SER 222 n 107 SER 222 A ILE 223 n 108 ILE 223 A HIS 224 n 109 HIS 224 A LEU 225 n 110 LEU 225 A GLY 226 n 111 GLY 226 A GLY 227 n 112 GLY 227 A VAL 228 n 113 VAL 228 A PHE 229 n 114 PHE 229 A GLU 230 n 115 GLU 230 A LEU 231 n 116 LEU 231 A GLN 232 n 117 GLN 232 A PRO 233 n 118 PRO 233 A GLY 234 n 119 GLY 234 A ALA 235 n 120 ALA 235 A SER 236 n 121 SER 236 A VAL 237 n 122 VAL 237 A PHE 238 n 123 PHE 238 A VAL 239 n 124 VAL 239 A ASN 240 n 125 ASN 240 A VAL 241 n 126 VAL 241 A THR 242 n 127 THR 242 A ASP 243 n 128 ASP 243 A PRO 244 n 129 PRO 244 A SER 245 n 130 SER 245 A GLN 246 n 131 GLN 246 A VAL 247 n 132 VAL 247 A SER 248 n 133 SER 248 A HIS 249 n 134 HIS 249 A GLY 250 n 135 GLY 250 A THR 251 n 136 THR 251 A GLY 252 n 137 GLY 252 A PHE 253 n 138 PHE 253 A THR 254 n 139 THR 254 A SER 255 n 140 SER 255 A PHE 256 n 141 PHE 256 A GLY 257 n 142 GLY 257 A LEU 258 n 143 LEU 258 A LEU 259 n 144 LEU 259 A LYS 260 n 145 LYS 260 A LEU 261 n 146 LEU 261 A author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -y,x-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_555 -x+y,-x,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O ALA 124 A O ALA 9 A N LEU 258 A N LEU 143 A O SER 255 A O SER 140 A N GLN 174 A N GLN 59 A O GLY 167 A O GLY 52 A N LEU 231 A N LEU 116 A O THR 154 A O THR 39 A N THR 162 A N THR 47 A O SER 236 A O SER 121 A N LYS 196 A N LYS 81 A O PHE 189 A O PHE 74 A N ASN 210 A N ASN 95 1 A A PRO GLN 120 121 135.29 1 A A THR THR 134 135 -122.70 1 A A THR SER 135 136 -60.92 1 A A GLY ALA 234 235 129.59 1 A A ALA SER 235 236 -64.52 1 A TYR 145 0.179 SIDE CHAIN 1 A TYR 146 0.093 SIDE CHAIN 1 A ARG 165 0.144 SIDE CHAIN 1 10.81 1.50 110.90 121.71 A A A CA CB CG1 VAL VAL VAL 126 126 126 N 1 -4.60 0.60 121.00 116.40 A A A CB CG CD2 TYR TYR TYR 145 145 145 N 1 -5.42 0.80 121.30 115.88 A A A CG CD1 CE1 TYR TYR TYR 145 145 145 N 1 -5.52 0.60 121.00 115.48 A A A CB CG CD2 TYR TYR TYR 146 146 146 N 1 4.23 0.50 120.30 124.53 A A A NE CZ NH1 ARG ARG ARG 165 165 165 N 1 -5.18 0.50 120.30 115.12 A A A NE CZ NH2 ARG ARG ARG 165 165 165 N 1 -11.20 1.80 110.60 99.40 A A A N CA CB ARG ARG ARG 181 181 181 N 1 15.65 2.60 111.60 127.25 A A A CB CG CD ARG ARG ARG 181 181 181 N 1 3.40 0.50 120.30 123.70 A A A NE CZ NH1 ARG ARG ARG 203 203 203 N 1 -9.43 1.40 123.60 114.17 A A A CD NE CZ ARG ARG ARG 207 207 207 N 1 18.76 2.50 121.70 140.46 A A A C N CA ALA SER SER 235 236 236 Y 1 -5.17 0.70 120.80 115.63 A A A CB CG CD2 PHE PHE PHE 256 256 256 N 1 -18.63 2.50 121.70 103.07 A A A C N CA LYS LEU LEU 260 261 261 Y 1 A A CG CD2 HIS HIS 125 125 0.061 0.009 1.354 1.415 N 1 A GLN 118 -52.13 61.77 1 A ASN 119 -150.60 -63.10 1 A PRO 120 -48.58 22.44 1 A GLN 121 -49.86 155.32 1 A THR 135 -90.95 -66.27 1 A ALA 187 -132.94 -33.15 1 A GLU 202 96.10 136.79 1 A SER 213 70.37 73.02 1 A SER 214 -27.95 99.73 1 A LYS 216 -45.19 157.84 1 A CYS 218 -5.48 77.44 1 A ALA 235 98.13 -111.34 1 A HIS 249 -87.21 47.55 0.295 0.0002 0.223 0.223 2.00 7.5 1099 10990 10.0 82.3 RANDOM 10000000000.0 0.001 1 THROUGHOUT 2.0 MOLECULAR REPLACEMENT PDB ENTRY 1CDA 2.00 7.5 192 1566 0 0 1374 1.75 100. 1ALY 42587 2. 0.067 0.056 1 6.5 2.71 77.1 0.056 1.75 1.84 3.9 0.15 1.2 46.1 data scaling XDS data reduction BUDDHA model building X-PLOR 3.1 refinement X-PLOR 3.1 data reduction XDS data scaling BUDDHA phasing X-PLOR 3.1 CRYSTAL STRUCTURE OF HUMAN CD40 LIGAND 1 N N 2 N N THE ACTIVE MOLECULE IS A TRIMER GENERATED BY APPLYING THE THREE-FOLD SYMMETRY AROUND THE C AXIS. A PRO 244 A PRO 129 HELX_P A GLN 246 A GLN 131 5 1 3 disulf 2.051 A CYS 178 A SG CYS 63 1_555 A CYS 218 A SG CYS 103 1_555 CYTOKINE CD40L, CD40 LIGAND, CYTOKINE, TNF, HYPER-IGM SYNDROME A GLY 116 A GLY 1 1 A ASP 117 A ASP 2 -21.99 A ASN 157 A ASN 42 1 A GLY 158 A GLY 43 -0.36 A GLY 158 A GLY 43 1 A LYS 159 A LYS 44 -3.72 A GLN 186 A GLN 71 1 A ALA 187 A ALA 72 19.91 A SER 214 A SER 99 1 A ALA 215 A ALA 100 28.22 A GLY 250 A GLY 135 1 A THR 251 A THR 136 5.39 TNFL5_HUMAN UNP 1 1 P29965 MIETYNQTSPRSAATGLPISMKIFMYLLTVFLITQMIGSALFAVYLHRRLDKIEDERNLHEDFVFMKTIQRCNTGERSLS LLNCEEIKSQFEGFVKDIMLNKEETKKENSFEMQKGDQNPQIAAHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQ LTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKSPGRFERILLRAANTHSSAKPCGQQSIHLGGVFELQPGASVFVN VTDPSQVSHGTGFTSFGLLKL 116 261 1ALY 116 261 P29965 A 1 1 146 4 2 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ALA 123 A ALA 8 A ILE 127 A ILE 12 A SER 255 A SER 140 A LYS 260 A LYS 145 A GLY 167 A GLY 52 A SER 179 A SER 64 A GLY 219 A GLY 104 A LEU 231 A LEU 116 A VAL 153 A VAL 38 A GLU 156 A GLU 41 A GLN 160 A GLN 45 A VAL 163 A VAL 48 A SER 236 A SER 121 A VAL 241 A VAL 126 A PRO 188 A PRO 73 A LYS 196 A LYS 81 A ARG 203 A ARG 88 A THR 211 A THR 96 146 H 3