0.031651
0.000000
0.000000
0.000000
0.030894
0.000000
0.000000
0.000000
0.041290
0.00000
0.00000
0.00000
Burkhart, B.M.
Pangborn, W.A.
Duax, W.L.
Langs, D.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
31.595
32.369
24.219
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H13 N O2
131.173
D-LEUCINE
D-peptide linking
C5 H11 N O2
117.146
D-VALINE
D-peptide linking
C2 H6 O
46.068
ETHANOL
non-polymer
C2 H7 N O
61.083
ETHANOLAMINE
L-peptide COOH carboxy terminus
C6 H11 N O3
145.156
n
N-formyl-L-valine
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C7 H13 N O3
159.183
n
N-formyl-L-isoleucine
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
R
C
N
16
N
C
N
17
N
C
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
O
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
N
N
37
R
C
N
38
N
C
N
39
N
C
N
40
N
C
N
41
N
C
N
42
N
O
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
C
N
56
N
C
N
57
N
O
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
C
N
65
N
N
N
66
N
C
N
67
N
O
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
C
N
76
N
N
N
77
N
O
N
78
S
C
N
79
N
C
N
80
N
C
N
81
N
C
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
O
N
92
N
C
N
93
N
H
N
94
N
O
N
95
N
H
N
96
N
N
N
97
N
C
N
98
N
C
N
99
N
O
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
O
N
107
N
H
N
108
N
H
N
109
N
C
N
110
N
N
N
111
N
O
N
112
S
C
N
113
S
C
N
114
N
C
N
115
N
C
N
116
N
C
N
117
N
C
N
118
N
O
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
N
N
134
S
C
N
135
N
C
N
136
N
O
N
137
N
C
Y
138
N
C
Y
139
N
C
Y
140
N
C
Y
141
N
N
Y
142
N
C
Y
143
N
C
Y
144
N
C
Y
145
N
C
Y
146
N
C
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
S
C
N
162
N
C
N
163
N
O
N
164
N
C
Y
165
N
C
Y
166
N
C
Y
167
N
C
Y
168
N
C
Y
169
N
C
Y
170
N
C
N
171
N
O
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
doub
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
doub
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
Y
135
N
doub
Y
136
N
sing
Y
137
N
sing
N
138
N
sing
Y
139
N
doub
Y
140
N
sing
Y
141
N
sing
N
142
N
sing
Y
143
N
sing
Y
144
N
doub
N
145
N
sing
Y
146
N
doub
N
147
N
sing
Y
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
Y
163
N
doub
Y
164
N
sing
Y
165
N
sing
N
166
N
sing
Y
167
N
doub
N
168
N
sing
Y
169
N
doub
N
170
N
sing
Y
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
US
Biophys.J.
BIOJAU
0030
0006-3495
75
2135
10.1016/S0006-3495(98)77656-8
9788907
Heterodimer Formation and Crystal Nucleation of Gramicidin D
1998
US
Science
SCIEAS
0038
0036-8075
241
188
10.1126/SCIENCE.2455345
2455345
Three-Dimensional Structure at 0.86 A of the Uncomplexed Form of the Transmembrane Ion Channel Peptide Gramicidin A.
1988
10.2210/pdb1alz/pdb
pdb_00001alz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
120
1
COLLIMATOR
AREA DETECTOR
1987-01
SIEMENS
GRAPHITE(002)
M
x-ray
1
1.5418
1.0
1.5418
SEALED TUBE
OTHER
1873.285
ILE-GRAMICIDIN C
1
nat
polymer
1882.294
VAL-GRAMICIDIN A
1
nat
polymer
46.068
ETHANOL
14
syn
non-polymer
18.015
water
1
nat
water
no
yes
(QIL)GA(DLE)A(DVA)V(DVA)W(DLE)Y(DLE)W(DLE)W(ETA)
XGALAVVVWLYLWLWX
A
polypeptide(L)
no
yes
(FVA)GA(DLE)A(DVA)V(DVA)W(DLE)W(DLE)W(DLE)W(ETA)
VGALAVVVWLWLWLWX
B
polypeptide(L)
y
y
n
n
n
n
n
n
n
n
n
y
y
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1393
BREVIBACILLUS BREVIS
sample
1393
BREVIBACILLUS BREVIS
1
1.76
30.00
7.0
CRYSTALLIZED BY BATCH METHODS FROM A SATURATED SOLUTION OF GRAMICIDIN D IN ETHANOL., PH 7.0, BATCH METHOD
diffrn_source
pdbx_database_status
atom_site
atom_site_anisotrop
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Other
Data collection
Other
Atomic model
Data collection
Database references
Derived calculations
1
0
1998-03-04
1
1
2011-06-14
1
2
2011-07-13
1
3
2011-07-27
1
4
2012-12-12
1
5
2018-04-04
2
0
2023-11-15
_diffrn_source.type
_pdbx_database_status.process_site
_atom_site.auth_atom_id
_atom_site.label_atom_id
_atom_site_anisotrop.pdbx_auth_atom_id
_atom_site_anisotrop.pdbx_label_atom_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1998-03-04
SPRSDE
CRYSTAL STRUCTURE OF GRAMICIDIN S COMPLEXED WITH ALKALINE PROTEINASE SAVINASE
CRYSTAL STRUCTURE OF GRAMICIDIN A FROM CRYSTALS GROWN IN A LIPID CUBIC PHASE.
CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLEXED WITH CESIUM CHLORIDE
CRYSTAL STRUCTURE OF GRAMICIDIN A FROM BACILLUS BREVIS
CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLEXED WITH CESIUM CHLORIDE
CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLRXED WITH POTASSIUM THIOCYANATE
SOLUTION STRUCTURE OF THE GRAMICIDIN A
SOLUTION STRUCTURE OF GRAMICIDIN A IN SODIUM DODECYL SULFATE MICELLES
SOLUTION STRUCTURE OF A LINKED SHORTENED GRAMICIDIN A IN BENZENE/ACETONE 10:1
SOLID STATE NMR STRUCTURE OF GRAMICIDIN A IN HYDRATED DMPC BILAYERS,
SOLUTION STRUCTURE OF GRAMICIDIN A IN METHANOL IN THE PRESENCE OF CACL
SOLUTION STRUCTURE OF GRAMICIDIN A (W15G) IN SODIUM DODECYL SULFATE MICELLES
SOLUTION STRUCTURE OF GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES
SOLUTION STRUCTURE OF GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES IN THE PRESENCE OF EXCESS NA+
SOLUTION STRUCTURE OF GRAMICIDIN A (V1F) IN SODIUM DODECYL SULFATE MICELLES
SOLUTION STRUCTURE OF GRAMICIDIN B IN SODIUM DODECYL SULFATE MICELLES
SOLUTION STRUCTURE OF GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES
SOLUTION STRUCTURE OF F1-GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES
SOLUTION STRUCTURE OF A LINKED UNSYMMETRIC GRAMICIDIN A IN A MEMBRANE-ISOELECTRICAL SOLVENTS MIXTURE, IN THE PRESENCE OF CSCL
CRYSTAL STRUCTURE OF GRAMICIDIN D IN ETHANOL
CRYSTAL STRUCTURE OF GRAMICIDIN D COMPLEX WITH KI IN METHANOL
CRYSTAL STRUCTURE OF GRAMICIDIN D COMPLEX WITH NAI
CRYSTAL STRUCTURE OF GRAMICIDIN D IN N-PROPANOL
CRYSTAL STRUCTURE OF GRAMICIDIN D IN METHANOL
Y
BNL
1997-06-06
REL
REL
EOH
ETHANOL
HOH
water
GRAMICIDIN IS A HETEROGENEOUS MIXTURE OF SEVERAL COMPOUNDS
INCLUDING GRAMICIDIN A, B AND C WHICH ARE OBTAINED FROM
BACILLUS BREVIS AND CALLED COLLECTIVELY GRAMICIDIN D
HERE, GRAMICIDIN A AND C ARE REPRESENTED BY THE SEQUENCE (SEQRES)
THE SEQUENCE IS FOR THE MAJOR COMPONENT GRAMICIDIN C (QIL1 AND TRP11) WHILE THE MINOR COMPONENT (FVA1 AND TYR11) IS REPRESENTED IN SEQADV WITH MICROHETEROGENEITY. NOTE: QIL1 AND FVA1 ARE FORMYLATED ILE1 AND VAL1, RESPECTIVELY.
Antibiotic
GRAMICIDIN A IS A HEXADECAMERIC HELICAL PEPTIDE
WITH ALTERNATING D,L CHARACTERISTICS.
THE N-TERM IS FORMYLATED (RESIDUE 0).
THE C-TERM IS CAPPED WITH ETHANOLAMINE (RESIDUE 16).
GRAMICIDIN A
Polypeptide
Antibiotic
GRAMICIDIN C IS A HEXADECAMERIC HELICAL PEPTIDE
WITH ALTERNATING D,L CHARACTERISTICS.
THE N-TERM IS FORMYLATED (RESIDUE 0).
THE C-TERM IS CAPPED WITH ETHANOLAMINE (RESIDUE 16).
GRAMICIDIN C
Polypeptide
EOH
501
3
EOH
EOH
501
A
EOH
504
3
EOH
EOH
504
A
EOH
505
3
EOH
EOH
505
A
EOH
507
3
EOH
EOH
507
A
EOH
509
3
EOH
EOH
509
A
EOH
510
3
EOH
EOH
510
A
EOH
511
3
EOH
EOH
511
A
EOH
512
3
EOH
EOH
512
A
EOH
513
3
EOH
EOH
513
A
EOH
514
3
EOH
EOH
514
A
EOH
502
3
EOH
EOH
502
B
EOH
503
3
EOH
EOH
503
B
EOH
506
3
EOH
EOH
506
B
EOH
508
3
EOH
EOH
508
B
HOH
2001
4
HOH
HOH
2001
A
QIL
1
y
1
QIL
1
A
FVA
1
y
1
FVA
1
A
GLY
2
n
2
GLY
2
A
ALA
3
n
3
ALA
3
A
DLE
4
n
4
DLE
4
A
ALA
5
n
5
ALA
5
A
DVA
6
n
6
DVA
6
A
VAL
7
n
7
VAL
7
A
DVA
8
n
8
DVA
8
A
TRP
9
n
9
TRP
9
A
DLE
10
n
10
DLE
10
A
TYR
11
y
11
TYR
11
A
TRP
11
y
11
TRP
11
A
DLE
12
n
12
DLE
12
A
TRP
13
n
13
TRP
13
A
DLE
14
n
14
DLE
14
A
TRP
15
n
15
TRP
15
A
ETA
16
n
16
ETA
16
A
FVA
1
n
1
FVA
1
B
GLY
2
n
2
GLY
2
B
ALA
3
n
3
ALA
3
B
DLE
4
n
4
DLE
4
B
ALA
5
n
5
ALA
5
B
DVA
6
n
6
DVA
6
B
VAL
7
n
7
VAL
7
B
DVA
8
n
8
DVA
8
B
TRP
9
n
9
TRP
9
B
DLE
10
n
10
DLE
10
B
TRP
11
n
11
TRP
11
B
DLE
12
n
12
DLE
12
B
TRP
13
n
13
TRP
13
B
DLE
14
n
14
DLE
14
B
TRP
15
n
15
TRP
15
B
ETA
16
n
16
ETA
16
B
0.108
0.162
0.108
0.162
0.131
0.185
484
1033
5.000
5.000
10782
author_and_software_defined_assembly
PISA
2
dimeric
2780
-0.0
5160
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TRP
13
A
N
TRP
13
B
O
ALA
3
B
O
ALA
3
1
A
A
O
HO
EOH
EOH
510
511
1.06
A
1
B
B
HO
HO
EOH
EOH
502
508
1.08
B
1
A
A
HE1
HO
TRP
EOH
9
507
1.24
A
1
B
A
HO
HO
ETA
EOH
16
513
1.25
B
1
A
A
O
O
EOH
EOH
510
511
1.88
A
1
-7.77
0.90
109.00
101.23
A
A
A
CD1
NE1
CE2
TRP
TRP
TRP
11
11
11
B
B
B
N
1
-7.84
1.10
130.40
122.56
A
A
A
NE1
CE2
CZ2
TRP
TRP
TRP
11
11
11
B
B
B
N
1
-8.72
1.30
118.80
110.08
A
A
A
CD2
CE3
CZ3
TRP
TRP
TRP
11
11
11
B
B
B
N
1
8.98
1.10
121.20
130.18
A
A
A
CE3
CZ3
CH2
TRP
TRP
TRP
11
11
11
B
B
B
N
1
-6.87
1.00
117.40
110.53
A
A
A
CH2
CZ2
CE2
TRP
TRP
TRP
11
11
11
B
B
B
N
1
A
B
H21
H23
EOH
EOH
504
506
1.04
B
1_555
1_545
1
A
B
HO
H11
EOH
EOH
514
506
1.08
B
1_555
4_576
1
A
B
O
H11
EOH
EOH
514
506
1.21
B
1_555
4_576
1
A
B
HO
C1
EOH
EOH
514
506
1.56
B
1_555
4_576
1
A
B
O
C1
EOH
EOH
514
506
1.98
B
1_555
4_576
1
A
ALA
5
-160.49
87.86
1
A
TRP
13
-158.33
85.09
1
A
TRP
15
-157.93
83.45
1
B
ALA
5
-156.81
86.68
1
B
TRP
13
-161.47
87.94
0.185
0.162
0.162
0.86
100.00
3464
1033
21454
5742
5.000
99.2
5% OF REFLECTIONS IN THIN RESOLUTION SHELLS.
1
FREE R-VALUE
0.000
DIRECT METHODS, FOURIER RECYCLING
MODIFIED ENGH AND HUBER FOR ETHANOLAMINE BASED ON SERINE
ENGH AND HUBER
MOEWS & KRETSINGER (G = 0.22140 U = 1.29472)
5
365.06
312.16
0.86
100.00
1
337
42
0
294
0.016
0.032
0.339
0.114
0.113
0.005
0.030
0.036
0.860
100.000
1ALZ
21454
-3.000
0.04300
0.04300
1
5.1000
1.100
99.9
0.04300
0.86
0.90
1.200
0.04300
1
1.10
93.6
model building
SHELXL-97
refinement
SHELXL-97
data reduction
SIEMENS
data scaling
SIEMENS
phasing
SHELXL-97
GRAMICIDIN D FROM BACILLUS BREVIS (ETHANOL SOLVATE)
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
covale
1.316
both
B
A
FVA
1
A
C
FVA
1
1_555
A
GLY
2
A
N
GLY
2
1_555
covale
1.316
both
A
A
QIL
1
A
C
QIL
1
1_555
A
GLY
2
A
N
GLY
2
1_555
covale
1.314
both
A
ALA
3
A
C
ALA
3
1_555
A
DLE
4
A
N
DLE
4
1_555
covale
1.343
both
A
DLE
4
A
C
DLE
4
1_555
A
ALA
5
A
N
ALA
5
1_555
covale
1.320
both
A
ALA
5
A
C
ALA
5
1_555
A
DVA
6
A
N
DVA
6
1_555
covale
1.346
both
A
DVA
6
A
C
DVA
6
1_555
A
VAL
7
A
N
VAL
7
1_555
covale
1.317
both
A
VAL
7
A
C
VAL
7
1_555
A
DVA
8
A
N
DVA
8
1_555
covale
1.331
both
A
DVA
8
A
C
DVA
8
1_555
A
TRP
9
A
N
TRP
9
1_555
covale
1.320
both
A
TRP
9
A
C
TRP
9
1_555
A
DLE
10
A
N
DLE
10
1_555
covale
1.343
both
B
A
DLE
10
A
C
DLE
10
1_555
A
TRP
11
A
N
TRP
11
1_555
covale
1.331
both
A
A
DLE
10
A
C
DLE
10
1_555
A
TYR
11
A
N
TYR
11
1_555
covale
1.277
both
A
A
TYR
11
A
C
TYR
11
1_555
A
DLE
12
A
N
DLE
12
1_555
covale
1.310
both
B
A
TRP
11
A
C
TRP
11
1_555
A
DLE
12
A
N
DLE
12
1_555
covale
1.328
both
A
DLE
12
A
C
DLE
12
1_555
A
TRP
13
A
N
TRP
13
1_555
covale
1.329
both
A
TRP
13
A
C
TRP
13
1_555
A
DLE
14
A
N
DLE
14
1_555
covale
1.332
both
A
DLE
14
A
C
DLE
14
1_555
A
TRP
15
A
N
TRP
15
1_555
covale
1.317
both
A
TRP
15
A
C
TRP
15
1_555
A
ETA
16
A
N
ETA
16
1_555
covale
1.323
both
B
FVA
1
B
C
FVA
1
1_555
B
GLY
2
B
N
GLY
2
1_555
covale
1.311
both
B
ALA
3
B
C
ALA
3
1_555
B
DLE
4
B
N
DLE
4
1_555
covale
1.317
both
B
DLE
4
B
C
DLE
4
1_555
B
ALA
5
B
N
ALA
5
1_555
covale
1.326
both
B
ALA
5
B
C
ALA
5
1_555
B
DVA
6
B
N
DVA
6
1_555
covale
1.342
both
B
DVA
6
B
C
DVA
6
1_555
B
VAL
7
B
N
VAL
7
1_555
covale
1.310
both
B
VAL
7
B
C
VAL
7
1_555
B
DVA
8
B
N
DVA
8
1_555
covale
1.344
both
B
DVA
8
B
C
DVA
8
1_555
B
TRP
9
B
N
TRP
9
1_555
covale
1.302
both
B
TRP
9
B
C
TRP
9
1_555
B
DLE
10
B
N
DLE
10
1_555
covale
1.331
both
B
B
DLE
10
B
C
DLE
10
1_555
B
TRP
11
B
N
TRP
11
1_555
covale
1.330
both
A
B
DLE
10
B
C
DLE
10
1_555
B
TRP
11
B
N
TRP
11
1_555
covale
1.330
both
B
B
TRP
11
B
C
TRP
11
1_555
B
DLE
12
B
N
DLE
12
1_555
covale
1.346
both
A
B
TRP
11
B
C
TRP
11
1_555
B
DLE
12
B
N
DLE
12
1_555
covale
1.328
both
B
DLE
12
B
C
DLE
12
1_555
B
TRP
13
B
N
TRP
13
1_555
covale
1.327
both
B
TRP
13
B
C
TRP
13
1_555
B
DLE
14
B
N
DLE
14
1_555
covale
1.338
both
B
DLE
14
B
C
DLE
14
1_555
B
TRP
15
B
N
TRP
15
1_555
covale
1.328
both
B
TRP
15
B
C
TRP
15
1_555
B
ETA
16
B
N
ETA
16
1_555
ANTIBIOTIC
GRAMICIDIN, ANTIFUNGAL, ANTIBIOTIC, ANTIBACTERIAL, MEMBRANE ION CHANNEL, LINEAR GRAMICIDIN
given
0.867230
0.158400
0.472030
0.158670
-0.986540
0.039550
0.471940
0.040600
-0.880690
-8.48000
64.92000
11.57000
NOR00248
NOR
1
NOR00248
NOR00243
NOR
2
NOR00243
1
16
1ALZ
1
16
NOR00248
A
1
1
16
1
16
1ALZ
1
16
NOR00243
B
2
1
16
1
QIL
microheterogeneity
FVA
1
1ALZ
A
NOR00248
NOR
1
1
1
TRP
microheterogeneity
TYR
11
1ALZ
A
NOR00248
NOR
11
11
2
anti-parallel
A
GLY
2
A
GLY
2
A
DLE
14
A
DLE
14
B
GLY
2
B
GLY
2
B
DLE
14
B
DLE
14
BINDING SITE FOR RESIDUE EOH A 501
A
EOH
501
Software
5
BINDING SITE FOR RESIDUE EOH A 504
A
EOH
504
Software
8
BINDING SITE FOR RESIDUE EOH A 505
A
EOH
505
Software
6
BINDING SITE FOR RESIDUE EOH A 507
A
EOH
507
Software
5
BINDING SITE FOR RESIDUE EOH A 509
A
EOH
509
Software
6
BINDING SITE FOR RESIDUE EOH A 510
A
EOH
510
Software
4
BINDING SITE FOR RESIDUE EOH A 511
A
EOH
511
Software
8
BINDING SITE FOR RESIDUE EOH A 512
A
EOH
512
Software
4
BINDING SITE FOR RESIDUE EOH A 513
A
EOH
513
Software
6
BINDING SITE FOR RESIDUE EOH A 514
A
EOH
514
Software
11
BINDING SITE FOR RESIDUE EOH B 502
B
EOH
502
Software
4
BINDING SITE FOR RESIDUE EOH B 503
B
EOH
503
Software
3
BINDING SITE FOR RESIDUE EOH B 506
B
EOH
506
Software
7
BINDING SITE FOR RESIDUE EOH B 508
B
EOH
508
Software
4
BINDING SITE FOR CHAIN A OF ILE-GRAMICIDIN C
Software
44
BINDING SITE FOR CHAIN B OF VAL-GRAMICIDIN A
Software
43
A
GLY
2
A
GLY
2
5
1_555
A
EOH
510
H
EOH
5
1_555
A
EOH
511
I
EOH
5
1_555
A
EOH
512
J
EOH
5
1_555
B
DLE
10
B
DLE
10
5
4_566
A
DLE
4
A
DLE
4
8
1_555
A
EOH
513
K
EOH
8
1_555
A
EOH
514
L
EOH
8
4_466
B
TRP
9
B
TRP
9
8
3_645
B
TRP
13
B
TRP
13
8
4_466
B
TRP
15
B
TRP
15
8
1_555
B
ETA
16
B
ETA
16
8
1_555
B
EOH
506
O
EOH
8
1_545
A
TRP
9
A
TRP
9
6
3_646
A
TRP
15
A
TRP
15
6
1_545
A
ETA
16
A
ETA
16
6
1_545
A
EOH
509
G
EOH
6
1_545
A
EOH
513
K
EOH
6
1_555
B
TRP
13
B
TRP
13
6
4_466
A
DLE
4
A
DLE
4
5
3_656
A
TRP
9
A
TRP
9
5
1_555
A
DLE
10
A
DLE
10
5
1_555
A
DLE
12
A
DLE
12
5
4_476
A
EOH
510
H
EOH
5
4_466
A
VAL
7
A
VAL
7
6
4_476
A
DVA
8
A
DVA
8
6
3_656
A
TRP
9
A
TRP
9
6
3_656
A
TRP
15
A
TRP
15
6
1_555
A
EOH
505
E
EOH
6
1_565
B
DLE
12
B
DLE
12
6
3_656
A
TRP
13
A
TRP
13
4
1_545
A
EOH
501
C
EOH
4
1_555
A
EOH
507
F
EOH
4
4_566
A
EOH
511
I
EOH
4
1_555
A
TRP
13
A
TRP
13
8
1_545
A
DLE
14
A
DLE
14
8
1_545
A
EOH
501
C
EOH
8
1_555
A
EOH
510
H
EOH
8
1_555
A
EOH
512
J
EOH
8
1_555
A
HOH
2001
Q
HOH
8
4_566
B
GLY
2
B
GLY
2
8
1_545
B
DLE
10
B
DLE
10
8
4_566
A
GLY
2
A
GLY
2
4
1_555
A
EOH
501
C
EOH
4
1_555
A
EOH
511
I
EOH
4
1_555
A
EOH
514
L
EOH
4
1_555
A
ETA
16
A
ETA
16
6
1_545
A
EOH
504
D
EOH
6
1_555
A
EOH
505
E
EOH
6
1_555
A
EOH
514
L
EOH
6
4_466
B
TRP
13
B
TRP
13
6
4_466
B
ETA
16
B
ETA
16
6
1_555
A
ALA
5
A
ALA
5
11
4_566
A
VAL
7
A
VAL
7
11
1_555
A
DVA
8
A
DVA
8
11
1_555
A
EOH
504
D
EOH
11
4_566
A
EOH
512
J
EOH
11
1_555
A
EOH
513
K
EOH
11
4_566
B
TRP
9
B
TRP
9
11
2_675
B
TRP
11
B
TRP
11
11
4_566
B
TRP
13
B
TRP
13
11
1_555
B
EOH
506
O
EOH
11
4_576
B
EOH
508
P
EOH
11
4_576
A
TRP
15
A
TRP
15
4
1_555
A
ETA
16
A
ETA
16
4
1_555
B
DLE
4
B
DLE
4
4
1_555
B
EOH
508
P
EOH
4
1_555
A
ETA
16
A
ETA
16
3
1_555
A
HOH
2001
Q
HOH
3
3_655
B
TRP
15
B
TRP
15
3
1_565
A
TYR
11
A
TYR
11
7
3_655
A
ETA
16
A
ETA
16
7
1_555
A
EOH
504
D
EOH
7
1_565
A
EOH
514
L
EOH
7
4_476
B
TRP
9
B
TRP
9
7
3_655
B
DLE
10
B
DLE
10
7
3_655
B
EOH
508
P
EOH
7
1_555
A
EOH
514
L
EOH
4
4_476
B
TRP
13
B
TRP
13
4
4_476
B
EOH
502
M
EOH
4
1_555
B
EOH
506
O
EOH
4
1_555
A
EOH
501
C
EOH
44
1_555
A
EOH
504
D
EOH
44
1_555
A
EOH
505
E
EOH
44
3_656
A
EOH
505
E
EOH
44
1_565
A
EOH
507
F
EOH
44
3_646
A
EOH
507
F
EOH
44
1_555
A
EOH
507
F
EOH
44
4_576
A
EOH
509
G
EOH
44
1_555
A
EOH
509
G
EOH
44
4_576
A
EOH
509
G
EOH
44
3_646
A
EOH
510
H
EOH
44
1_555
A
EOH
510
H
EOH
44
1_565
A
EOH
511
I
EOH
44
1_565
A
EOH
512
J
EOH
44
1_555
A
EOH
513
K
EOH
44
1_565
A
EOH
514
L
EOH
44
4_466
A
EOH
514
L
EOH
44
1_555
A
HOH
2001
Q
HOH
44
1_555
B
GLY
2
B
GLY
2
44
1_555
B
GLY
2
B
GLY
2
44
1_545
B
ALA
3
B
ALA
3
44
1_555
B
ALA
3
B
ALA
3
44
1_545
B
DLE
4
B
DLE
4
44
1_555
B
ALA
5
B
ALA
5
44
1_555
B
ALA
5
B
ALA
5
44
4_576
B
DVA
6
B
DVA
6
44
1_555
B
VAL
7
B
VAL
7
44
1_555
B
DVA
8
B
DVA
8
44
1_555
B
TRP
9
B
TRP
9
44
1_555
B
DLE
10
B
DLE
10
44
1_555
B
TRP
11
B
TRP
11
44
4_566
B
TRP
11
B
TRP
11
44
3_656
B
TRP
11
B
TRP
11
44
1_555
B
DLE
12
B
DLE
12
44
1_555
B
TRP
13
B
TRP
13
44
1_555
B
DLE
14
B
DLE
14
44
1_555
B
TRP
15
B
TRP
15
44
2_675
B
TRP
15
B
TRP
15
44
3_655
B
TRP
15
B
TRP
15
44
1_555
B
ETA
16
B
ETA
16
44
1_555
B
EOH
502
M
EOH
44
1_555
B
EOH
503
N
EOH
44
1_555
B
EOH
506
O
EOH
44
1_555
B
EOH
506
O
EOH
44
3_645
A
GLY
2
A
GLY
2
43
1_555
A
GLY
2
A
GLY
2
43
1_565
A
ALA
3
A
ALA
3
43
1_555
A
ALA
3
A
ALA
3
43
1_565
A
DLE
4
A
DLE
4
43
1_555
A
ALA
5
A
ALA
5
43
1_555
A
DVA
6
A
DVA
6
43
1_555
A
VAL
7
A
VAL
7
43
1_555
A
DVA
8
A
DVA
8
43
1_555
A
TRP
9
A
TRP
9
43
1_555
A
DLE
10
A
DLE
10
43
1_555
A
TYR
11
A
TYR
11
43
1_555
A
TYR
11
A
TYR
11
43
3_645
A
DLE
12
A
DLE
12
43
1_555
A
TRP
13
A
TRP
13
43
2_674
A
TRP
13
A
TRP
13
43
4_476
A
TRP
13
A
TRP
13
43
1_555
A
DLE
14
A
DLE
14
43
1_555
A
DLE
14
A
DLE
14
43
2_674
A
TRP
15
A
TRP
15
43
1_555
A
TRP
15
A
TRP
15
43
3_646
A
ETA
16
A
ETA
16
43
1_555
A
EOH
501
C
EOH
43
4_466
A
EOH
504
D
EOH
43
3_655
A
EOH
504
D
EOH
43
4_566
A
EOH
504
D
EOH
43
1_555
A
EOH
505
E
EOH
43
1_565
A
EOH
505
E
EOH
43
4_566
A
EOH
507
F
EOH
43
3_656
A
EOH
509
G
EOH
43
3_646
A
EOH
511
I
EOH
43
1_565
A
EOH
511
I
EOH
43
4_466
A
EOH
512
J
EOH
43
1_565
A
EOH
513
K
EOH
43
1_555
A
EOH
513
K
EOH
43
4_566
A
EOH
513
K
EOH
43
1_565
A
EOH
514
L
EOH
43
1_555
A
EOH
514
L
EOH
43
4_466
A
EOH
514
L
EOH
43
2_674
B
EOH
502
M
EOH
43
1_555
B
EOH
503
N
EOH
43
1_545
B
EOH
506
O
EOH
43
3_645
B
EOH
508
P
EOH
43
4_576
19
P 21 21 21