1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Caceres-Cortes, J. Sugiyama, H. Ikudome, K. Saito, I. Wang, A.H.-J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 Co 3 58.933 COBALT (III) ION non-polymer H2 O2 34.015 HYDROGEN PEROXIDE non-polymer C48 H67 N17 O10 S2 1106.283 AGLYCON OF PEPLOMYCIN AGLYCON OF (S)-N1-[3-[(1-PHENYLETHYL)AMINO]-PROPYL]BLEOMYCINAMIDE non-polymer N 1 N CO N 2 N O N 3 N O N 4 N H N 5 N H N 6 N N N 7 N C N 8 N O N 9 S C N 10 N N N 11 N C N 12 N N N 13 N N N 14 N C N 15 N O N 16 N C N 17 S C Y 18 N C Y 19 N N Y 20 N C Y 21 N N Y 22 N C Y 23 N C N 24 N N N 25 N C N 26 N C N 27 N O N 28 N N N 29 S C N 30 R C N 31 N O Y 32 N C Y 33 N N Y 34 N C Y 35 N C Y 36 N N N 37 N C N 38 N O N 39 N N N 40 R C N 41 N C N 42 S C N 43 N O N 44 S C N 45 N C N 46 N C N 47 N O N 48 N N N 49 S C N 50 R C N 51 N O N 52 N C N 53 N C N 54 N O N 55 N N N 56 N C N 57 N C Y 58 N C Y 59 N S Y 60 N C Y 61 N N Y 62 N C Y 63 N C Y 64 N S Y 65 N C Y 66 N N Y 67 N C N 68 N C N 69 N O N 70 N N N 71 N C N 72 N C N 73 N C N 74 N N N 75 N C N 76 S C Y 77 N C Y 78 N C Y 79 N C Y 80 N C Y 81 N C Y 82 N C N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N doub N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing Y 29 N doub Y 30 N sing Y 31 N sing Y 32 N doub N 33 N sing Y 34 N doub Y 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N doub N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing Y 54 N sing Y 55 N doub Y 56 N doub Y 57 N sing N 58 N sing Y 59 N sing N 60 N sing N 61 N sing N 62 N doub N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N doub Y 108 N sing Y 109 N doub N 110 N sing Y 111 N sing Y 112 N sing Y 113 N sing Y 114 N doub Y 115 N sing Y 116 N doub N 117 N sing Y 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing Y 141 N doub Y 142 N sing Y 143 N sing N 144 N sing Y 145 N doub N 146 N sing Y 147 N sing N 148 N sing Y 149 N doub N 150 N sing N 151 N sing IX Eur.J.Biochem. EJBCAI 0262 0014-2956 244 818 828 10.1111/j.1432-1033.1997.00818.x 9108252 Structures of cobalt(III)-pepleomycin and cobalt(III)-deglycopepleomycin (green forms) determined by NMR studies. 1997 10.2210/pdb1ao2/pdb pdb_00001ao2 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1106.283 AGLYCON OF PEPLOMYCIN 1 syn non-polymer 58.933 COBALT (III) ION 1 syn non-polymer a derivative of bleomycin from Streptomyces verticillus 34.015 HYDROGEN PEROXIDE 1 syn non-polymer database_2 pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_site chem_comp_atom chem_comp_bond entity pdbx_entity_src_syn repository Initial release Version format compliance Version format compliance Database references Derived calculations Data collection Source and taxonomy Structure summary 1 0 1999-07-30 1 1 2008-04-26 1 2 2011-07-13 1 3 2022-03-23 1 4 2023-12-27 1 5 2024-03-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _entity.details RCSB Y RCSB 1997-07-16 REL REL PMY AGLYCON OF PEPLOMYCIN 3CO COBALT (III) ION PEO HYDROGEN PEROXIDE method used to determine the structure : NOE-RMD minimal energy 1 1 2D NOESY TOCSY DQF-COSY 6.4 1 atm 275 K Refinement details can be found in the JRNL citation 1 minimized average 50mM sodium phosphate, 0.15 M NaCl H2O A.T.Brunger refinement X-PLOR 3.1 refinement SPEDREF 500 Varian VXR 500 PMY 1 1 PMY PMY 1 A 3CO 2 2 3CO 3CO 2 A PEO 3 3 PEO PEO 3 A author_defined_assembly 1 monomeric A PMY 1 A NB PMY 1_555 A 3CO 2 B CO 3CO 1_555 A PMY 1 A NC PMY 1_555 87.7 A PMY 1 A NB PMY 1_555 A 3CO 2 B CO 3CO 1_555 A PMY 1 A NG PMY 1_555 90.3 A PMY 1 A NC PMY 1_555 A 3CO 2 B CO 3CO 1_555 A PMY 1 A NG PMY 1_555 85.4 A PMY 1 A NB PMY 1_555 A 3CO 2 B CO 3CO 1_555 A PMY 1 A NH PMY 1_555 87.7 A PMY 1 A NC PMY 1_555 A 3CO 2 B CO 3CO 1_555 A PMY 1 A NH PMY 1_555 169.0 A PMY 1 A NG PMY 1_555 A 3CO 2 B CO 3CO 1_555 A PMY 1 A NH PMY 1_555 84.7 A PMY 1 A NB PMY 1_555 A 3CO 2 B CO 3CO 1_555 A PMY 1 A NJ PMY 1_555 82.1 A PMY 1 A NC PMY 1_555 A 3CO 2 B CO 3CO 1_555 A PMY 1 A NJ PMY 1_555 91.0 A PMY 1 A NG PMY 1_555 A 3CO 2 B CO 3CO 1_555 A PMY 1 A NJ PMY 1_555 171.7 A PMY 1 A NH PMY 1_555 A 3CO 2 B CO 3CO 1_555 A PMY 1 A NJ PMY 1_555 98.2 A PMY 1 A NB PMY 1_555 A 3CO 2 B CO 3CO 1_555 A PEO 3 C O1 PEO 1_555 176.5 A PMY 1 A NC PMY 1_555 A 3CO 2 B CO 3CO 1_555 A PEO 3 C O1 PEO 1_555 90.3 A PMY 1 A NG PMY 1_555 A 3CO 2 B CO 3CO 1_555 A PEO 3 C O1 PEO 1_555 86.7 A PMY 1 A NH PMY 1_555 A 3CO 2 B CO 3CO 1_555 A PEO 3 C O1 PEO 1_555 93.8 A PMY 1 A NJ PMY 1_555 A 3CO 2 B CO 3CO 1_555 A PEO 3 C O1 PEO 1_555 100.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 cobalt(III)-deglycopepleomycin determined by NMR studies 1 N N 2 N N 3 N N metalc 1.997 A PMY 1 A NB PMY 1_555 A 3CO 2 B CO 3CO 1_555 metalc 1.999 A PMY 1 A NC PMY 1_555 A 3CO 2 B CO 3CO 1_555 metalc 1.866 A PMY 1 A NG PMY 1_555 A 3CO 2 B CO 3CO 1_555 metalc 1.987 A PMY 1 A NH PMY 1_555 A 3CO 2 B CO 3CO 1_555 metalc 2.066 A PMY 1 A NJ PMY 1_555 A 3CO 2 B CO 3CO 1_555 metalc 1.988 A 3CO 2 B CO 3CO 1_555 A PEO 3 C O1 PEO 1_555 INHIBITOR anticancer drugs, deglycosylated pepleomycin, peplomycin, bleomycin, DNA, two-dimensional NMR, solution structures, INHIBITOR BINDING SITE FOR RESIDUE PMY A 1 A PMY 1 Software 2 BINDING SITE FOR RESIDUE 3CO A 2 A 3CO 2 Software 2 BINDING SITE FOR RESIDUE PEO A 3 A PEO 3 Software 2 A 3CO 2 B 3CO 2 1_555 A PEO 3 C PEO 2 1_555 A PMY 1 A PMY 2 1_555 A PEO 3 C PEO 2 1_555 A PMY 1 A PMY 2 1_555 A 3CO 2 B 3CO 2 1_555 1 P 1