1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Caceres-Cortes, J.
Sugiyama, H.
Ikudome, K.
Saito, I.
Wang, A.H.-J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
Co 3
58.933
COBALT (III) ION
non-polymer
H2 O2
34.015
HYDROGEN PEROXIDE
non-polymer
C48 H67 N17 O10 S2
1106.283
AGLYCON OF PEPLOMYCIN
AGLYCON OF (S)-N1-[3-[(1-PHENYLETHYL)AMINO]-PROPYL]BLEOMYCINAMIDE
non-polymer
N
1
N
CO
N
2
N
O
N
3
N
O
N
4
N
H
N
5
N
H
N
6
N
N
N
7
N
C
N
8
N
O
N
9
S
C
N
10
N
N
N
11
N
C
N
12
N
N
N
13
N
N
N
14
N
C
N
15
N
O
N
16
N
C
N
17
S
C
Y
18
N
C
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
Y
23
N
C
N
24
N
N
N
25
N
C
N
26
N
C
N
27
N
O
N
28
N
N
N
29
S
C
N
30
R
C
N
31
N
O
Y
32
N
C
Y
33
N
N
Y
34
N
C
Y
35
N
C
Y
36
N
N
N
37
N
C
N
38
N
O
N
39
N
N
N
40
R
C
N
41
N
C
N
42
S
C
N
43
N
O
N
44
S
C
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
S
C
N
50
R
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
C
N
57
N
C
Y
58
N
C
Y
59
N
S
Y
60
N
C
Y
61
N
N
Y
62
N
C
Y
63
N
C
Y
64
N
S
Y
65
N
C
Y
66
N
N
Y
67
N
C
N
68
N
C
N
69
N
O
N
70
N
N
N
71
N
C
N
72
N
C
N
73
N
C
N
74
N
N
N
75
N
C
N
76
S
C
Y
77
N
C
Y
78
N
C
Y
79
N
C
Y
80
N
C
Y
81
N
C
Y
82
N
C
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
doub
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
Y
29
N
doub
Y
30
N
sing
Y
31
N
sing
Y
32
N
doub
N
33
N
sing
Y
34
N
doub
Y
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
doub
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
Y
54
N
sing
Y
55
N
doub
Y
56
N
doub
Y
57
N
sing
N
58
N
sing
Y
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
doub
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
doub
Y
108
N
sing
Y
109
N
doub
N
110
N
sing
Y
111
N
sing
Y
112
N
sing
Y
113
N
sing
Y
114
N
doub
Y
115
N
sing
Y
116
N
doub
N
117
N
sing
Y
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
Y
141
N
doub
Y
142
N
sing
Y
143
N
sing
N
144
N
sing
Y
145
N
doub
N
146
N
sing
Y
147
N
sing
N
148
N
sing
Y
149
N
doub
N
150
N
sing
N
151
N
sing
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
244
818
828
10.1111/j.1432-1033.1997.00818.x
9108252
Structures of cobalt(III)-pepleomycin and cobalt(III)-deglycopepleomycin (green forms) determined by NMR studies.
1997
10.2210/pdb1ao2/pdb
pdb_00001ao2
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1106.283
AGLYCON OF PEPLOMYCIN
1
syn
non-polymer
58.933
COBALT (III) ION
1
syn
non-polymer
a derivative of bleomycin from Streptomyces verticillus
34.015
HYDROGEN PEROXIDE
1
syn
non-polymer
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
chem_comp_atom
chem_comp_bond
entity
pdbx_entity_src_syn
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
Source and taxonomy
Structure summary
1
0
1999-07-30
1
1
2008-04-26
1
2
2011-07-13
1
3
2022-03-23
1
4
2023-12-27
1
5
2024-03-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_entity.details
RCSB
Y
RCSB
1997-07-16
REL
REL
PMY
AGLYCON OF PEPLOMYCIN
3CO
COBALT (III) ION
PEO
HYDROGEN PEROXIDE
method used to determine the structure : NOE-RMD
minimal energy
1
1
2D NOESY
TOCSY
DQF-COSY
6.4
1
atm
275
K
Refinement details can be found in the JRNL citation
1
minimized average
50mM sodium phosphate, 0.15 M NaCl
H2O
A.T.Brunger
refinement
X-PLOR
3.1
refinement
SPEDREF
500
Varian
VXR 500
PMY
1
1
PMY
PMY
1
A
3CO
2
2
3CO
3CO
2
A
PEO
3
3
PEO
PEO
3
A
author_defined_assembly
1
monomeric
A
PMY
1
A
NB
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
A
PMY
1
A
NC
PMY
1_555
87.7
A
PMY
1
A
NB
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
A
PMY
1
A
NG
PMY
1_555
90.3
A
PMY
1
A
NC
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
A
PMY
1
A
NG
PMY
1_555
85.4
A
PMY
1
A
NB
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
A
PMY
1
A
NH
PMY
1_555
87.7
A
PMY
1
A
NC
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
A
PMY
1
A
NH
PMY
1_555
169.0
A
PMY
1
A
NG
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
A
PMY
1
A
NH
PMY
1_555
84.7
A
PMY
1
A
NB
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
A
PMY
1
A
NJ
PMY
1_555
82.1
A
PMY
1
A
NC
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
A
PMY
1
A
NJ
PMY
1_555
91.0
A
PMY
1
A
NG
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
A
PMY
1
A
NJ
PMY
1_555
171.7
A
PMY
1
A
NH
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
A
PMY
1
A
NJ
PMY
1_555
98.2
A
PMY
1
A
NB
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
A
PEO
3
C
O1
PEO
1_555
176.5
A
PMY
1
A
NC
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
A
PEO
3
C
O1
PEO
1_555
90.3
A
PMY
1
A
NG
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
A
PEO
3
C
O1
PEO
1_555
86.7
A
PMY
1
A
NH
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
A
PEO
3
C
O1
PEO
1_555
93.8
A
PMY
1
A
NJ
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
A
PEO
3
C
O1
PEO
1_555
100.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
cobalt(III)-deglycopepleomycin determined by NMR studies
1
N
N
2
N
N
3
N
N
metalc
1.997
A
PMY
1
A
NB
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
metalc
1.999
A
PMY
1
A
NC
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
metalc
1.866
A
PMY
1
A
NG
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
metalc
1.987
A
PMY
1
A
NH
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
metalc
2.066
A
PMY
1
A
NJ
PMY
1_555
A
3CO
2
B
CO
3CO
1_555
metalc
1.988
A
3CO
2
B
CO
3CO
1_555
A
PEO
3
C
O1
PEO
1_555
INHIBITOR
anticancer drugs, deglycosylated pepleomycin, peplomycin, bleomycin, DNA, two-dimensional NMR, solution structures, INHIBITOR
BINDING SITE FOR RESIDUE PMY A 1
A
PMY
1
Software
2
BINDING SITE FOR RESIDUE 3CO A 2
A
3CO
2
Software
2
BINDING SITE FOR RESIDUE PEO A 3
A
PEO
3
Software
2
A
3CO
2
B
3CO
2
1_555
A
PEO
3
C
PEO
2
1_555
A
PMY
1
A
PMY
2
1_555
A
PEO
3
C
PEO
2
1_555
A
PMY
1
A
PMY
2
1_555
A
3CO
2
B
3CO
2
1_555
1
P 1