1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Caceres-Cortes, J. Sugiyama, H. Ikudome, K. Saito, I. Wang, A.H.-J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 Co 3 58.933 COBALT (III) ION non-polymer C7 H13 N O7 223.181 n 3-O-carbamoyl-alpha-D-mannopyranose 3-O-FORMAMIDO-ALPHA-D-MANNOPYRANOSIDE; 3-O-carbamoyl-alpha-D-mannose; 3-O-carbamoyl-D-mannose; 3-O-carbamoyl-mannose D-saccharide, alpha linking C6 H12 O6 180.156 alpha-L-gulopyranose alpha-L-gulose; L-gulose; gulose; ALPHA-L-GULOPYRANOSIDE L-saccharide, alpha linking H2 O2 34.015 HYDROGEN PEROXIDE non-polymer C48 H67 N17 O10 S2 1106.283 AGLYCON OF PEPLOMYCIN AGLYCON OF (S)-N1-[3-[(1-PHENYLETHYL)AMINO]-PROPYL]BLEOMYCINAMIDE non-polymer N 1 N CO N 2 N O N 3 S C N 4 N O N 5 S C N 6 N O N 7 S C N 8 N O N 9 N C N 10 N O N 11 N N N 12 R C N 13 N O N 14 R C N 15 N C N 16 N O N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N O N 31 R C N 32 N O N 33 S C N 34 N O N 35 S C N 36 N O N 37 S C N 38 N O N 39 S C N 40 N C N 41 N O N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N O N 55 N O N 56 N H N 57 N H N 58 N N N 59 N C N 60 N O N 61 S C N 62 N N N 63 N C N 64 N N N 65 N N N 66 N C N 67 N O N 68 N C N 69 S C Y 70 N C Y 71 N N Y 72 N C Y 73 N N Y 74 N C Y 75 N C N 76 N N N 77 N C N 78 N C N 79 N O N 80 N N N 81 S C N 82 R C N 83 N O Y 84 N C Y 85 N N Y 86 N C Y 87 N C Y 88 N N N 89 N C N 90 N O N 91 N N N 92 R C N 93 N C N 94 S C N 95 N O N 96 S C N 97 N C N 98 N C N 99 N O N 100 N N N 101 S C N 102 R C N 103 N O N 104 N C N 105 N C N 106 N O N 107 N N N 108 N C N 109 N C Y 110 N C Y 111 N S Y 112 N C Y 113 N N Y 114 N C Y 115 N C Y 116 N S Y 117 N C Y 118 N N Y 119 N C N 120 N C N 121 N O N 122 N N N 123 N C N 124 N C N 125 N C N 126 N N N 127 N C N 128 S C Y 129 N C Y 130 N C Y 131 N C Y 132 N C Y 133 N C Y 134 N C N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N doub N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N doub N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing Y 81 N doub Y 82 N sing Y 83 N sing Y 84 N doub N 85 N sing Y 86 N doub Y 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N doub Y 108 N doub Y 109 N sing N 110 N sing Y 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing Y 158 N sing Y 159 N doub Y 160 N sing Y 161 N doub N 162 N sing Y 163 N sing Y 164 N sing Y 165 N sing Y 166 N doub Y 167 N sing Y 168 N doub N 169 N sing Y 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing Y 193 N doub Y 194 N sing Y 195 N sing N 196 N sing Y 197 N doub N 198 N sing Y 199 N sing N 200 N sing Y 201 N doub N 202 N sing N 203 N sing IX Eur.J.Biochem. EJBCAI 0262 0014-2956 244 818 828 10.1111/j.1432-1033.1997.00818.x 9108252 Structures of cobalt(III)-pepleomycin and cobalt(III)-deglycopepleomycin (green forms) determined by NMR studies. 1997 10.2210/pdb1ao4/pdb pdb_00001ao4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 385.322 3-O-carbamoyl-alpha-D-mannopyranose-(1-2)-alpha-L-gulopyranose 1 man branched 1106.283 AGLYCON OF PEPLOMYCIN 1 syn non-polymer 58.933 COBALT (III) ION 1 syn non-polymer 34.015 HYDROGEN PEROXIDE 1 syn non-polymer atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_struct_conn_angle struct_asym struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 repository Initial release Carbohydrate remediation repository Remediation Version format compliance Version format compliance Atomic model Data collection Derived calculations Structure summary Data collection Database references Structure summary 1 0 1999-07-30 1 1 2008-04-26 1 2 2011-07-13 2 0 2020-07-29 2 1 2023-12-27 _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_value_order _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession A GUP 1 n A GUP 1 A 3FM 2 n A 3FM 2 LGulpa a-L-gulopyranose a-L-Gulp Gul BNL Y RCSB 1997-07-16 REL REL oligosaccharide WURCS=2.0/2,2,1/[a1121h-1a_1-5][a1122h-1a_1-5_3*OCN/3=O]/1-2/a2-b1 1 PDB2Glycan 1.1.0 WURCS [][L-1-deoxy-Gulp]{[(2+1)][a-D-Manp]{[(3+1)][<C1N1O1>]{}}} 1 PDB-CARE LINUCS C1 O2 3FM GUP 2 1 1 O1 HO2 sing n n PMY AGLYCON OF PEPLOMYCIN 3CO COBALT (III) ION PEO HYDROGEN PEROXIDE method used to determine the structure : NOE-RMD minimal energy 1 1 2D NOESY TOCSY DQF-COSY 6.4 1 atm 275 K Refinement details can be found in the JRNL citation 1 minimized average 50mM sodium phosphate, 0.15 M NaCl H2O A.T.Brunger refinement X-PLOR 3.1 refinement SPEDREF 500 Varian VXR 500 PMY 3 2 PMY PMY 3 A 3CO 4 3 3CO 3CO 4 A PEO 5 4 PEO PEO 5 A author_defined_assembly 1 monomeric A 3FM 2 A NCA 3FM 1_555 A 3CO 4 C CO 3CO 1_555 A PMY 3 B NJ PMY 1_555 90.3 A 3FM 2 A NCA 3FM 1_555 A 3CO 4 C CO 3CO 1_555 A PMY 3 B NH PMY 1_555 80.2 A PMY 3 B NJ PMY 1_555 A 3CO 4 C CO 3CO 1_555 A PMY 3 B NH PMY 1_555 94.2 A 3FM 2 A NCA 3FM 1_555 A 3CO 4 C CO 3CO 1_555 A PMY 3 B NG PMY 1_555 98.3 A PMY 3 B NJ PMY 1_555 A 3CO 4 C CO 3CO 1_555 A PMY 3 B NG PMY 1_555 171.3 A PMY 3 B NH PMY 1_555 A 3CO 4 C CO 3CO 1_555 A PMY 3 B NG PMY 1_555 86.1 A 3FM 2 A NCA 3FM 1_555 A 3CO 4 C CO 3CO 1_555 A PMY 3 B NC PMY 1_555 95.4 A PMY 3 B NJ PMY 1_555 A 3CO 4 C CO 3CO 1_555 A PMY 3 B NC PMY 1_555 96.6 A PMY 3 B NH PMY 1_555 A 3CO 4 C CO 3CO 1_555 A PMY 3 B NC PMY 1_555 168.4 A PMY 3 B NG PMY 1_555 A 3CO 4 C CO 3CO 1_555 A PMY 3 B NC PMY 1_555 83.9 A 3FM 2 A NCA 3FM 1_555 A 3CO 4 C CO 3CO 1_555 A PEO 5 D O1 PEO 1_555 173.2 A PMY 3 B NJ PMY 1_555 A 3CO 4 C CO 3CO 1_555 A PEO 5 D O1 PEO 1_555 87.4 A PMY 3 B NH PMY 1_555 A 3CO 4 C CO 3CO 1_555 A PEO 5 D O1 PEO 1_555 93.6 A PMY 3 B NG PMY 1_555 A 3CO 4 C CO 3CO 1_555 A PEO 5 D O1 PEO 1_555 84.0 A PMY 3 B NC PMY 1_555 A 3CO 4 C CO 3CO 1_555 A PEO 5 D O1 PEO 1_555 91.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 COBALT(III)-PEPLOMYCIN COMPLEX DETERMINED BY NMR STUDIES 1 N N 2 N N 3 N N 4 N N covale 1.387 both sing A GUP 1 A O2 GUP 1_555 A 3FM 2 A C1 3FM 1_555 covale 1.432 one A GUP 1 A C1 GUP 1_555 A PMY 3 B OH1 PMY 1_555 metalc 1.998 A 3FM 2 A NCA 3FM 1_555 A 3CO 4 C CO 3CO 1_555 metalc 1.965 A PMY 3 B NJ PMY 1_555 A 3CO 4 C CO 3CO 1_555 metalc 2.000 A PMY 3 B NH PMY 1_555 A 3CO 4 C CO 3CO 1_555 metalc 1.870 A PMY 3 B NG PMY 1_555 A 3CO 4 C CO 3CO 1_555 metalc 2.042 A PMY 3 B NC PMY 1_555 A 3CO 4 C CO 3CO 1_555 metalc 1.992 A 3CO 4 C CO 3CO 1_555 A PEO 5 D O1 PEO 1_555 INHIBITOR ANTICANCER DRUGS, PEPLOMYCIN, PEPLEOMYCIN, BLEOMYCIN, DNA, TWO-DIMENSIONAL NMR, SOLUTION STRUCTURES, INHIBITOR 1 P 1