1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Caceres-Cortes, J.
Sugiyama, H.
Ikudome, K.
Saito, I.
Wang, A.H.-J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
Co 3
58.933
COBALT (III) ION
non-polymer
C7 H13 N O7
223.181
n
3-O-carbamoyl-alpha-D-mannopyranose
3-O-FORMAMIDO-ALPHA-D-MANNOPYRANOSIDE; 3-O-carbamoyl-alpha-D-mannose; 3-O-carbamoyl-D-mannose; 3-O-carbamoyl-mannose
D-saccharide, alpha linking
C6 H12 O6
180.156
alpha-L-gulopyranose
alpha-L-gulose; L-gulose; gulose; ALPHA-L-GULOPYRANOSIDE
L-saccharide, alpha linking
H2 O2
34.015
HYDROGEN PEROXIDE
non-polymer
C48 H67 N17 O10 S2
1106.283
AGLYCON OF PEPLOMYCIN
AGLYCON OF (S)-N1-[3-[(1-PHENYLETHYL)AMINO]-PROPYL]BLEOMYCINAMIDE
non-polymer
N
1
N
CO
N
2
N
O
N
3
S
C
N
4
N
O
N
5
S
C
N
6
N
O
N
7
S
C
N
8
N
O
N
9
N
C
N
10
N
O
N
11
N
N
N
12
R
C
N
13
N
O
N
14
R
C
N
15
N
C
N
16
N
O
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
O
N
31
R
C
N
32
N
O
N
33
S
C
N
34
N
O
N
35
S
C
N
36
N
O
N
37
S
C
N
38
N
O
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
O
N
55
N
O
N
56
N
H
N
57
N
H
N
58
N
N
N
59
N
C
N
60
N
O
N
61
S
C
N
62
N
N
N
63
N
C
N
64
N
N
N
65
N
N
N
66
N
C
N
67
N
O
N
68
N
C
N
69
S
C
Y
70
N
C
Y
71
N
N
Y
72
N
C
Y
73
N
N
Y
74
N
C
Y
75
N
C
N
76
N
N
N
77
N
C
N
78
N
C
N
79
N
O
N
80
N
N
N
81
S
C
N
82
R
C
N
83
N
O
Y
84
N
C
Y
85
N
N
Y
86
N
C
Y
87
N
C
Y
88
N
N
N
89
N
C
N
90
N
O
N
91
N
N
N
92
R
C
N
93
N
C
N
94
S
C
N
95
N
O
N
96
S
C
N
97
N
C
N
98
N
C
N
99
N
O
N
100
N
N
N
101
S
C
N
102
R
C
N
103
N
O
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
N
N
108
N
C
N
109
N
C
Y
110
N
C
Y
111
N
S
Y
112
N
C
Y
113
N
N
Y
114
N
C
Y
115
N
C
Y
116
N
S
Y
117
N
C
Y
118
N
N
Y
119
N
C
N
120
N
C
N
121
N
O
N
122
N
N
N
123
N
C
N
124
N
C
N
125
N
C
N
126
N
N
N
127
N
C
N
128
S
C
Y
129
N
C
Y
130
N
C
Y
131
N
C
Y
132
N
C
Y
133
N
C
Y
134
N
C
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
doub
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
doub
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
Y
81
N
doub
Y
82
N
sing
Y
83
N
sing
Y
84
N
doub
N
85
N
sing
Y
86
N
doub
Y
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
doub
Y
108
N
doub
Y
109
N
sing
N
110
N
sing
Y
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
Y
158
N
sing
Y
159
N
doub
Y
160
N
sing
Y
161
N
doub
N
162
N
sing
Y
163
N
sing
Y
164
N
sing
Y
165
N
sing
Y
166
N
doub
Y
167
N
sing
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
Y
193
N
doub
Y
194
N
sing
Y
195
N
sing
N
196
N
sing
Y
197
N
doub
N
198
N
sing
Y
199
N
sing
N
200
N
sing
Y
201
N
doub
N
202
N
sing
N
203
N
sing
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
244
818
828
10.1111/j.1432-1033.1997.00818.x
9108252
Structures of cobalt(III)-pepleomycin and cobalt(III)-deglycopepleomycin (green forms) determined by NMR studies.
1997
10.2210/pdb1ao4/pdb
pdb_00001ao4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
385.322
3-O-carbamoyl-alpha-D-mannopyranose-(1-2)-alpha-L-gulopyranose
1
man
branched
1106.283
AGLYCON OF PEPLOMYCIN
1
syn
non-polymer
58.933
COBALT (III) ION
1
syn
non-polymer
34.015
HYDROGEN PEROXIDE
1
syn
non-polymer
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_struct_conn_angle
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Version format compliance
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Structure summary
1
0
1999-07-30
1
1
2008-04-26
1
2
2011-07-13
2
0
2020-07-29
2
1
2023-12-27
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_value_order
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
A
GUP
1
n
A
GUP
1
A
3FM
2
n
A
3FM
2
LGulpa
a-L-gulopyranose
a-L-Gulp
Gul
BNL
Y
RCSB
1997-07-16
REL
REL
oligosaccharide
WURCS=2.0/2,2,1/[a1121h-1a_1-5][a1122h-1a_1-5_3*OCN/3=O]/1-2/a2-b1
1
PDB2Glycan
1.1.0
WURCS
[][L-1-deoxy-Gulp]{[(2+1)][a-D-Manp]{[(3+1)][<C1N1O1>]{}}}
1
PDB-CARE
LINUCS
C1
O2
3FM
GUP
2
1
1
O1
HO2
sing
n
n
PMY
AGLYCON OF PEPLOMYCIN
3CO
COBALT (III) ION
PEO
HYDROGEN PEROXIDE
method used to determine the structure : NOE-RMD
minimal energy
1
1
2D NOESY
TOCSY
DQF-COSY
6.4
1
atm
275
K
Refinement details can be found in the JRNL citation
1
minimized average
50mM sodium phosphate, 0.15 M NaCl
H2O
A.T.Brunger
refinement
X-PLOR
3.1
refinement
SPEDREF
500
Varian
VXR 500
PMY
3
2
PMY
PMY
3
A
3CO
4
3
3CO
3CO
4
A
PEO
5
4
PEO
PEO
5
A
author_defined_assembly
1
monomeric
A
3FM
2
A
NCA
3FM
1_555
A
3CO
4
C
CO
3CO
1_555
A
PMY
3
B
NJ
PMY
1_555
90.3
A
3FM
2
A
NCA
3FM
1_555
A
3CO
4
C
CO
3CO
1_555
A
PMY
3
B
NH
PMY
1_555
80.2
A
PMY
3
B
NJ
PMY
1_555
A
3CO
4
C
CO
3CO
1_555
A
PMY
3
B
NH
PMY
1_555
94.2
A
3FM
2
A
NCA
3FM
1_555
A
3CO
4
C
CO
3CO
1_555
A
PMY
3
B
NG
PMY
1_555
98.3
A
PMY
3
B
NJ
PMY
1_555
A
3CO
4
C
CO
3CO
1_555
A
PMY
3
B
NG
PMY
1_555
171.3
A
PMY
3
B
NH
PMY
1_555
A
3CO
4
C
CO
3CO
1_555
A
PMY
3
B
NG
PMY
1_555
86.1
A
3FM
2
A
NCA
3FM
1_555
A
3CO
4
C
CO
3CO
1_555
A
PMY
3
B
NC
PMY
1_555
95.4
A
PMY
3
B
NJ
PMY
1_555
A
3CO
4
C
CO
3CO
1_555
A
PMY
3
B
NC
PMY
1_555
96.6
A
PMY
3
B
NH
PMY
1_555
A
3CO
4
C
CO
3CO
1_555
A
PMY
3
B
NC
PMY
1_555
168.4
A
PMY
3
B
NG
PMY
1_555
A
3CO
4
C
CO
3CO
1_555
A
PMY
3
B
NC
PMY
1_555
83.9
A
3FM
2
A
NCA
3FM
1_555
A
3CO
4
C
CO
3CO
1_555
A
PEO
5
D
O1
PEO
1_555
173.2
A
PMY
3
B
NJ
PMY
1_555
A
3CO
4
C
CO
3CO
1_555
A
PEO
5
D
O1
PEO
1_555
87.4
A
PMY
3
B
NH
PMY
1_555
A
3CO
4
C
CO
3CO
1_555
A
PEO
5
D
O1
PEO
1_555
93.6
A
PMY
3
B
NG
PMY
1_555
A
3CO
4
C
CO
3CO
1_555
A
PEO
5
D
O1
PEO
1_555
84.0
A
PMY
3
B
NC
PMY
1_555
A
3CO
4
C
CO
3CO
1_555
A
PEO
5
D
O1
PEO
1_555
91.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
COBALT(III)-PEPLOMYCIN COMPLEX DETERMINED BY NMR STUDIES
1
N
N
2
N
N
3
N
N
4
N
N
covale
1.387
both
sing
A
GUP
1
A
O2
GUP
1_555
A
3FM
2
A
C1
3FM
1_555
covale
1.432
one
A
GUP
1
A
C1
GUP
1_555
A
PMY
3
B
OH1
PMY
1_555
metalc
1.998
A
3FM
2
A
NCA
3FM
1_555
A
3CO
4
C
CO
3CO
1_555
metalc
1.965
A
PMY
3
B
NJ
PMY
1_555
A
3CO
4
C
CO
3CO
1_555
metalc
2.000
A
PMY
3
B
NH
PMY
1_555
A
3CO
4
C
CO
3CO
1_555
metalc
1.870
A
PMY
3
B
NG
PMY
1_555
A
3CO
4
C
CO
3CO
1_555
metalc
2.042
A
PMY
3
B
NC
PMY
1_555
A
3CO
4
C
CO
3CO
1_555
metalc
1.992
A
3CO
4
C
CO
3CO
1_555
A
PEO
5
D
O1
PEO
1_555
INHIBITOR
ANTICANCER DRUGS, PEPLOMYCIN, PEPLEOMYCIN, BLEOMYCIN, DNA, TWO-DIMENSIONAL NMR, SOLUTION STRUCTURES, INHIBITOR
1
P 1