1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Setayesh, F.R. Stone, M.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C18 H22 N5 O8 P 467.370 n 2'-DEOXY-N2-(S)STYRENE OXIDE GUANOSINE MONOPHOSPHATE DNA linking US Chem.Res.Toxicol. CRTOEC 2140 0893-228X 11 766 777 10.1021/tx9800147 9671539 Styrene oxide adducts in an oligodeoxynucleotide containing the human N-ras codon 12: minor groove structures of the R(12,1)- and S(12,1)-alpha-(N2-guanyl) stereoisomers determined by 1H nuclear magnetic resonance. 1998 10.2210/pdb1ap1/pdb pdb_00001ap1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 HUMAN N-RAS PROTOONCOGENE 3590.406 DNA (5'-D(*GP*GP*CP*AP*GSSP*GP*TP*GP*GP*TP*G)-3') 1 syn polymer HUMAN N-RAS PROTOONCOGENE 3239.127 DNA (5'-D(*CP*AP*CP*CP*AP*CP*CP*TP*GP*CP*C)-3') 1 syn polymer no yes (DG)(DG)(DC)(DA)(GSS)(DG)(DT)(DG)(DG)(DT)(DG) GGCAGGTGGTG A polydeoxyribonucleotide no no (DC)(DA)(DC)(DC)(DA)(DC)(DC)(DT)(DG)(DC)(DC) CACCACCTGCC B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n -8.098 1 19 A 1 B 22 -1.861 A_DG1:DC22_B 1 -14.521 -0.517 -0.112 -0.364 -0.788 1 19 A 2 B 21 -0.247 A_DG2:DC21_B 2 -4.618 -0.520 0.149 -0.189 -0.650 1 19 A 3 B 20 -0.793 A_DC3:DG20_B 3 -8.975 0.484 0.121 -0.209 2.117 1 20 A 4 B 19 -6.330 A_DA4:DT19_B 4 -2.778 0.235 0.287 -0.167 10.432 1 19 A 5 B 18 -2.430 A_GSS5:DC18_B 5 5.340 -0.671 0.548 -0.177 2.519 1 19 A 6 B 17 4.552 A_DG6:DC17_B 6 -16.987 -0.938 -0.155 -0.315 8.220 1 20 A 7 B 16 2.628 A_DT7:DA16_B 7 -19.636 -0.415 -0.362 -0.201 2.770 1 19 A 8 B 15 -0.341 A_DG8:DC15_B 8 -10.940 -0.559 0.088 -0.263 1.386 1 19 A 9 B 14 -2.536 A_DG9:DC14_B 9 -5.141 -0.549 0.216 -0.243 4.529 1 20 A 10 B 13 -1.729 A_DT10:DA13_B 10 -8.317 -0.315 0.171 -0.155 12.665 1 19 A 11 B 12 -2.813 A_DG11:DC12_B 11 -3.134 -0.657 0.421 -0.377 2.969 36.010 A A 1 2 0.104 B B 22 21 2.971 0.064 0.067 -0.128 AA_DG1DG2:DC21DC22_BB 1 -0.455 0.736 36.007 -0.216 -0.168 3.231 38.855 A A 2 3 -3.999 B B 21 20 3.224 -2.657 0.110 -0.194 AA_DG2DC3:DG20DC21_BB 2 2.122 -3.194 38.712 0.028 0.090 3.204 38.513 A A 3 4 -1.505 B B 20 19 3.117 -0.990 -0.950 0.130 AA_DC3DA4:DT19DG20_BB 3 -4.754 7.225 38.218 0.315 0.869 3.160 28.973 A A 4 5 10.835 B B 19 18 3.260 5.390 0.432 -0.178 AA_DA4GSS5:DC18DT19_BB 4 -0.757 1.521 28.468 -1.536 -1.029 3.554 34.387 A A 5 6 9.253 B B 18 17 3.630 5.446 0.175 -0.239 AA_GSS5DG6:DC17DC18_BB 5 1.906 -3.238 33.914 -1.345 0.032 2.999 38.364 A A 6 7 0.076 B B 17 16 3.002 0.050 0.081 0.263 AA_DG6DT7:DA16DC17_BB 6 3.041 -4.633 38.248 0.395 0.226 3.535 37.816 A A 7 8 13.862 B B 16 15 3.517 8.900 -0.100 0.486 AA_DT7DG8:DC15DA16_BB 7 -2.314 3.605 36.721 -0.504 -0.172 3.148 36.354 A A 8 9 3.427 B B 15 14 3.163 2.137 -0.043 -0.172 AA_DG8DG9:DC14DC15_BB 8 -1.181 1.894 36.274 -0.563 -0.090 3.131 36.530 A A 9 10 -7.172 B B 14 13 3.130 -4.484 0.161 -0.167 AA_DG9DT10:DA13DC14_BB 9 1.219 -1.949 36.243 0.328 -0.096 2.929 35.410 A A 10 11 -4.482 B B 13 12 2.935 -2.722 -0.056 -0.053 AA_DT10DG11:DC12DA13_BB 10 -2.326 3.830 35.235 0.272 -0.215 database_2 pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_conn repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other 1 0 1998-07-22 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_nmr_software.name _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id Y BNL 1997-07-22 REL THIS STRUCTURE PROVIDED THE BEST-FIT FOR THE NOE DATA BASED ON THE RELAXATION MATRIX ANALYSIS USING CORMA 1 1 NOESY 2QF-COSY TOCSY 6.9 303 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. NOE-RESTRAINED MOLECULAR DYNAMICS/SIMULATED ANNEALING BRUNGER refinement X-PLOR 3.1 structure solution Felix structure solution X-PLOR structure solution MARDIGRAS structure solution CORMA 500 Bruker AMX500 G 1 n 1 DG 1 A G 2 n 2 DG 2 A C 3 n 3 DC 3 A A 4 n 4 DA 4 A GSS 5 n 5 GSS 5 A G 6 n 6 DG 6 A T 7 n 7 DT 7 A G 8 n 8 DG 8 A G 9 n 9 DG 9 A T 10 n 10 DT 10 A G 11 n 11 DG 11 A C 12 n 1 DC 12 B A 13 n 2 DA 13 B C 14 n 3 DC 14 B C 15 n 4 DC 15 B A 16 n 5 DA 16 B C 17 n 6 DC 17 B C 18 n 7 DC 18 B T 19 n 8 DT 19 B G 20 n 9 DG 20 B C 21 n 10 DC 21 B C 22 n 11 DC 22 B author_defined_assembly 2 dimeric A GSS 5 A GSS 5 DG 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 2.66 0.30 108.30 110.96 A A A O4' C1' N9 DG DG DG 1 1 1 N 1 4.51 0.50 113.10 117.61 A A A N7 C8 N9 DG DG DG 1 1 1 N 1 -2.79 0.40 106.40 103.61 A A A C8 N9 C4 DG DG DG 1 1 1 N 1 3.16 0.30 108.30 111.46 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 4.50 0.50 113.10 117.60 A A A N7 C8 N9 DG DG DG 2 2 2 N 1 -2.79 0.40 106.40 103.61 A A A C8 N9 C4 DG DG DG 2 2 2 N 1 2.97 0.30 108.30 111.27 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 2.33 0.30 108.30 110.63 A A A O4' C1' N9 DA DA DA 4 4 4 N 1 3.83 0.50 113.80 117.63 A A A N7 C8 N9 DA DA DA 4 4 4 N 1 2.89 0.30 108.30 111.19 A A A O4' C1' N9 DG DG DG 6 6 6 N 1 4.50 0.50 113.10 117.60 A A A N7 C8 N9 DG DG DG 6 6 6 N 1 -2.69 0.40 106.40 103.71 A A A C8 N9 C4 DG DG DG 6 6 6 N 1 2.63 0.30 108.30 110.93 A A A O4' C1' N1 DT DT DT 7 7 7 N 1 2.74 0.30 108.30 111.04 A A A O4' C1' N9 DG DG DG 8 8 8 N 1 4.46 0.50 113.10 117.56 A A A N7 C8 N9 DG DG DG 8 8 8 N 1 -2.77 0.40 106.40 103.63 A A A C8 N9 C4 DG DG DG 8 8 8 N 1 2.66 0.30 108.30 110.96 A A A O4' C1' N9 DG DG DG 9 9 9 N 1 4.51 0.50 113.10 117.61 A A A N7 C8 N9 DG DG DG 9 9 9 N 1 -2.77 0.40 106.40 103.63 A A A C8 N9 C4 DG DG DG 9 9 9 N 1 2.94 0.30 108.30 111.24 A A A O4' C1' N1 DT DT DT 10 10 10 N 1 2.39 0.30 108.30 110.69 A A A O4' C1' N9 DG DG DG 11 11 11 N 1 4.56 0.50 113.10 117.66 A A A N7 C8 N9 DG DG DG 11 11 11 N 1 -2.79 0.40 106.40 103.61 A A A C8 N9 C4 DG DG DG 11 11 11 N 1 2.48 0.30 108.30 110.78 B B B O4' C1' N1 DC DC DC 12 12 12 N 1 2.48 0.30 108.30 110.78 B B B O4' C1' N9 DA DA DA 13 13 13 N 1 3.64 0.50 113.80 117.44 B B B N7 C8 N9 DA DA DA 13 13 13 N 1 2.18 0.30 108.30 110.48 B B B O4' C1' N1 DC DC DC 14 14 14 N 1 2.50 0.30 108.30 110.80 B B B O4' C1' N9 DA DA DA 16 16 16 N 1 3.60 0.50 113.80 117.40 B B B N7 C8 N9 DA DA DA 16 16 16 N 1 2.79 0.30 108.30 111.09 B B B O4' C1' N1 DC DC DC 17 17 17 N 1 3.37 0.30 108.30 111.67 B B B O4' C1' N1 DC DC DC 18 18 18 N 1 -36.54 1.90 104.00 67.46 B B B O3' P O5' DC DT DT 18 19 19 Y 1 17.10 1.10 110.50 127.60 B B B O3' P OP2 DC DT DT 18 19 19 Y 1 -30.25 2.20 105.20 74.95 B B B O3' P OP1 DC DT DT 18 19 19 Y 1 -20.39 1.50 119.60 99.21 B B B OP1 P OP2 DT DT DT 19 19 19 N 1 23.80 1.20 110.70 134.50 B B B O5' P OP1 DT DT DT 19 19 19 N 1 -20.89 0.90 105.70 84.81 B B B O5' P OP2 DT DT DT 19 19 19 N 1 2.39 0.30 108.30 110.69 B B B O4' C1' N1 DT DT DT 19 19 19 N 1 2.52 0.30 108.30 110.82 B B B O4' C1' N9 DG DG DG 20 20 20 N 1 4.42 0.50 113.10 117.52 B B B N7 C8 N9 DG DG DG 20 20 20 N 1 -2.45 0.40 106.40 103.95 B B B C8 N9 C4 DG DG DG 20 20 20 N 1 2.55 0.30 108.30 110.85 B B B O4' C1' N1 DC DC DC 21 21 21 N 1 -35.99 1.90 104.00 68.01 B B B O3' P O5' DC DC DC 21 22 22 Y 1 -22.33 2.20 105.20 82.87 B B B O3' P OP2 DC DC DC 21 22 22 Y 1 20.56 1.10 110.50 131.06 B B B O3' P OP1 DC DC DC 21 22 22 Y 1 -21.33 1.50 119.60 98.27 B B B OP1 P OP2 DC DC DC 22 22 22 N 1 -29.51 0.90 105.70 76.19 B B B O5' P OP1 DC DC DC 22 22 22 N 1 21.19 1.20 110.70 131.89 B B B O5' P OP2 DC DC DC 22 22 22 N 1 2.28 0.30 108.30 110.58 B B B O4' C1' N1 DC DC DC 22 22 22 N model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 THE SOLUTION NMR STRUCTURE OF AN S-STYRENE OXIDE ADDUCT AT THE N2 POSITION OF GUANINE OF AN 11 BASE-PAIR OLIGONUCLEOTIDE SEQUENCE CODING FOR AMINO ACIDS 11-13 OF THE PRODUCT OF THE N-RAS PROTOONCOGENE, MINIMIZED AVERAGE STRUCTURE 1 N N 2 N N covale 1.610 both A DA 4 A O3' DA 4 1_555 A GSS 5 A P GSS 5 1_555 covale 1.614 both A GSS 5 A O3' GSS 5 1_555 A DG 6 A P DG 6 1_555 hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 B DC 22 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 B DC 22 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 B DC 22 B N4 DC 11 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 21 B N3 DC 10 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 21 B O2 DC 10 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 21 B N4 DC 10 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 20 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 20 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 20 B N2 DG 9 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 B DT 19 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 B DT 19 B O4 DT 8 1_555 hydrog WATSON-CRICK A GSS 5 A N1 GSS 5 1_555 B DC 18 B N3 DC 7 1_555 hydrog WATSON-CRICK A GSS 5 A N2 GSS 5 1_555 B DC 18 B O2 DC 7 1_555 hydrog WATSON-CRICK A GSS 5 A O6 GSS 5 1_555 B DC 18 B N4 DC 7 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 B DC 17 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 B DC 17 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 B DC 17 B N4 DC 6 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 16 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 16 B N6 DA 5 1_555 hydrog WATSON-CRICK A DG 8 A N1 DG 8 1_555 B DC 15 B N3 DC 4 1_555 hydrog WATSON-CRICK A DG 8 A N2 DG 8 1_555 B DC 15 B O2 DC 4 1_555 hydrog WATSON-CRICK A DG 8 A O6 DG 8 1_555 B DC 15 B N4 DC 4 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 B DC 14 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 B DC 14 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 B DC 14 B N4 DC 3 1_555 hydrog WATSON-CRICK A DT 10 A N3 DT 10 1_555 B DA 13 B N1 DA 2 1_555 hydrog WATSON-CRICK A DT 10 A O4 DT 10 1_555 B DA 13 B N6 DA 2 1_555 hydrog WATSON-CRICK A DG 11 A N1 DG 11 1_555 B DC 12 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 11 A N2 DG 11 1_555 B DC 12 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 11 A O6 DG 11 1_555 B DC 12 B N4 DC 1 1_555 DNA DNA DUPLEX, HUMAN N-RAS GENE, CODON 12 SEQUENCE, S-STYRENE OXIDE, MINOR GROOVE ADDUCT, DEOXYRIBONUCLEIC ACID, DNA 1AP1 PDB 1 1AP1 1AP1 PDB 2 1AP1 1 11 1AP1 1 11 1AP1 A 1 1 11 12 22 1AP1 12 22 1AP1 B 2 1 11 1 P 1