0.010242 0.000000 0.005022 0.000000 0.021468 0.000000 0.000000 0.000000 0.016763 0.00000 0.00000 0.00000 RESIDUES PRO E 134 AND PRO E 315 ARE CIS PROLINES. THE REGION FROM SER E 277 TO SER E 281 IS POORLY ORDERED. THE FOLLOWING WATER MOLECULES ARE SITTING ON A SPECIAL POSITION: HOH 563, HOH 584 AND HOH 585. Sielecki, A.R. James, M.N.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 116.12 90.00 97.640 46.580 66.440 C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C8 H15 F2 N O3 211.206 2,2-DIFLUOROSTATINE L-peptide linking C3 H7 N O 73.094 DIMETHYLFORMAMIDE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C5 H10 O5 150.130 alpha-L-xylopyranose L-saccharide, alpha linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C5 H10 O2 102.132 ISOVALERIC ACID non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H12 O6 180.156 alpha-D-mannopyranose D-saccharide, alpha linking C H5 N 31.057 METHYLAMINE non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 31 3872 3886 10.1021/bi00130a019 1567842 Crystallographic analysis of transition state mimics bound to penicillopepsin: difluorostatine- and difluorostatone-containing peptides. 1992 John Wiley and Sons,New York US Biological Macromolecules and Assemblies 0879 0-471-85142-6 3 414 Aspartic Proteinases and Their Catalytic Pathway 1987 US Biochemistry BICHAW 0033 0006-2960 24 3701 Stereochemical Analysis of Peptide Bond Hydrolysis Catalyzed by the Aspartic Proteinase Penicillopepsin 1985 Walter De Gruyter & Co.,Berlin and New York Aspartic Proteinases and Their Inhibitors 0785 0899250785 163 X-Ray Diffraction Studies on Penicillopepsin and its Complexes: The Hydrolytic Mechanism 1985 US Biochemistry BICHAW 0033 0006-2960 23 635 Effect of Ph on the Activities of Penicillopepsin and Rhizopus Pepsin and a Proposal for the Productive Substrate Binding Mode in Penicillopepsin 1984 Pierce Chemical Company,Rockford,Il Peptides: Structure and Function, Proceedings of the of the Eighth American Peptide Symposium 817 0-935940-02-2 521 Crystallographic Analysis of a Pepstatin Analogue Binding to the Aspartyl Proteinase Penicillopepsin at 1.8 Angstroms Resolution 1983 UK J.Mol.Biol. JMOBAK 0070 0022-2836 163 299 Structure and Refinement of Penicillopepsin at 1.8 Angstroms Resolution 1983 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 79 6137 Conformational Flexibility in the Active Sites of Aspartyl Proteinases Revealed by a Pepstatin Fragment Binding to Penicillopepsin 1982 1 2 3 4 5 HSY E 399 HAS WRONG CHIRALITY AT ATOM C2 HSY E 399 HAS WRONG CHIRALITY AT ATOM C3 HSY E 399 HAS WRONG CHIRALITY AT ATOM C4 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 33468.809 PENICILLOPEPSIN 3.4.23.20 1 man polymer TRANSITION STATE MIMIC 506.626 INHIBITOR ISOVALERYL (IVA)-VAL-VAL-DIFLUOROSTATINE-N-METHYLAMINE 1 man polymer 180.156 alpha-D-mannopyranose 1 man non-polymer 150.130 alpha-L-xylopyranose 1 man non-polymer 96.063 SULFATE ION 1 syn non-polymer 73.094 DIMETHYLFORMAMIDE 1 syn non-polymer 18.015 water 295 nat water no no AASGVATNTPTANDEEYITPVTIGGTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELSGYTWSISYGDGSS ASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSSLAQPLFAVALKHQ QPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDS NAGGYVFDCSTNLPDFSVSISGYTATVPGSLINYGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFA PQA AASGVATNTPTANDEEYITPVTIGGTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELSGYTWSISYGDGSS ASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSSLAQPLFAVALKHQ QPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDS NAGGYVFDCSTNLPDFSVSISGYTATVPGSLINYGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFA PQA E polypeptide(L) no yes (IVA)VV(DFI)(NME) XVVXX I polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Penicillium vitale sample 5079 Penicillium janthinellum 2.00 38.37 atom_site chem_comp database_PDB_caveat entity pdbx_chem_comp_identifier pdbx_database_status pdbx_entity_nonpoly pdbx_unobs_or_zero_occ_atoms pdbx_validate_chiral struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Advisory Atomic model Data collection Derived calculations Other Structure summary 1 0 1994-01-31 1 1 2008-03-24 1 2 2011-07-13 2 0 2020-07-29 _atom_site.auth_atom_id _atom_site.label_atom_id _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_database_status.process_site _pdbx_entity_nonpoly.name _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id _pdbx_validate_chiral.auth_atom_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr2_label_atom_id LXylpa a-L-xylopyranose a-L-Xylp Xyl DManpa a-D-mannopyranose a-D-Manp Man Y BNL 1991-12-16 REL MAN alpha-D-mannopyranose HSY alpha-L-xylopyranose SO4 SULFATE ION DMF DIMETHYLFORMAMIDE HOH water MAN 328 3 MAN MAN 328 E HSY 399 4 HSY HSY 399 E SO4 365 5 SO4 SO4 365 E DMF 587 6 DMF DMF 587 I HOH 329 7 HOH HOH 329 E HOH 330 7 HOH HOH 330 E HOH 331 7 HOH HOH 331 E HOH 332 7 HOH HOH 332 E HOH 333 7 HOH HOH 333 E HOH 334 7 HOH HOH 334 E HOH 335 7 HOH HOH 335 E HOH 336 7 HOH HOH 336 E HOH 337 7 HOH HOH 337 E HOH 339 7 HOH HOH 339 E HOH 340 7 HOH HOH 340 E HOH 341 7 HOH HOH 341 E HOH 342 7 HOH HOH 342 E HOH 343 7 HOH HOH 343 E HOH 344 7 HOH HOH 344 E HOH 345 7 HOH HOH 345 E HOH 346 7 HOH HOH 346 E HOH 347 7 HOH HOH 347 E HOH 348 7 HOH HOH 348 E HOH 349 7 HOH HOH 349 E HOH 350 7 HOH HOH 350 E HOH 351 7 HOH HOH 351 E HOH 352 7 HOH HOH 352 E HOH 353 7 HOH HOH 353 E HOH 354 7 HOH HOH 354 E HOH 355 7 HOH HOH 355 E HOH 356 7 HOH HOH 356 E HOH 357 7 HOH HOH 357 E HOH 358 7 HOH HOH 358 E HOH 359 7 HOH HOH 359 E HOH 360 7 HOH HOH 360 E HOH 361 7 HOH HOH 361 E HOH 362 7 HOH HOH 362 E HOH 363 7 HOH HOH 363 E HOH 364 7 HOH HOH 364 E HOH 366 7 HOH HOH 366 E HOH 367 7 HOH HOH 367 E HOH 368 7 HOH HOH 368 E HOH 369 7 HOH HOH 369 E HOH 370 7 HOH HOH 370 E HOH 371 7 HOH HOH 371 E HOH 372 7 HOH HOH 372 E HOH 373 7 HOH HOH 373 E HOH 374 7 HOH HOH 374 E HOH 376 7 HOH HOH 376 E HOH 377 7 HOH HOH 377 E HOH 378 7 HOH HOH 378 E HOH 379 7 HOH HOH 379 E HOH 380 7 HOH HOH 380 E HOH 381 7 HOH HOH 381 E HOH 382 7 HOH HOH 382 E HOH 383 7 HOH HOH 383 E HOH 384 7 HOH HOH 384 E HOH 385 7 HOH HOH 385 E HOH 386 7 HOH HOH 386 E HOH 387 7 HOH HOH 387 E HOH 388 7 HOH HOH 388 E HOH 389 7 HOH HOH 389 E HOH 390 7 HOH HOH 390 E HOH 391 7 HOH HOH 391 E HOH 392 7 HOH HOH 392 E HOH 393 7 HOH HOH 393 E HOH 394 7 HOH HOH 394 E HOH 395 7 HOH HOH 395 E HOH 396 7 HOH HOH 396 E HOH 397 7 HOH HOH 397 E HOH 398 7 HOH HOH 398 E HOH 400 7 HOH HOH 400 E HOH 401 7 HOH HOH 401 E HOH 402 7 HOH HOH 402 E HOH 403 7 HOH HOH 403 E HOH 404 7 HOH HOH 404 E HOH 405 7 HOH HOH 405 E HOH 406 7 HOH HOH 406 E HOH 407 7 HOH HOH 407 E HOH 408 7 HOH HOH 408 E HOH 409 7 HOH HOH 409 E HOH 410 7 HOH HOH 410 E HOH 411 7 HOH HOH 411 E HOH 412 7 HOH HOH 412 E HOH 413 7 HOH HOH 413 E HOH 414 7 HOH HOH 414 E HOH 415 7 HOH HOH 415 E HOH 416 7 HOH HOH 416 E HOH 417 7 HOH HOH 417 E HOH 418 7 HOH HOH 418 E HOH 419 7 HOH HOH 419 E HOH 420 7 HOH HOH 420 E HOH 421 7 HOH HOH 421 E HOH 422 7 HOH HOH 422 E HOH 423 7 HOH HOH 423 E HOH 424 7 HOH HOH 424 E HOH 425 7 HOH HOH 425 E HOH 426 7 HOH HOH 426 E HOH 427 7 HOH HOH 427 E HOH 428 7 HOH HOH 428 E HOH 429 7 HOH HOH 429 E HOH 430 7 HOH HOH 430 E HOH 431 7 HOH HOH 431 E HOH 432 7 HOH HOH 432 E HOH 433 7 HOH HOH 433 E HOH 434 7 HOH HOH 434 E HOH 435 7 HOH HOH 435 E HOH 437 7 HOH HOH 437 E HOH 438 7 HOH HOH 438 E HOH 439 7 HOH HOH 439 E HOH 440 7 HOH HOH 440 E HOH 441 7 HOH HOH 441 E HOH 442 7 HOH HOH 442 E HOH 443 7 HOH HOH 443 E HOH 444 7 HOH HOH 444 E HOH 445 7 HOH HOH 445 E HOH 446 7 HOH HOH 446 E HOH 447 7 HOH HOH 447 E HOH 448 7 HOH HOH 448 E HOH 450 7 HOH HOH 450 E HOH 451 7 HOH HOH 451 E HOH 452 7 HOH HOH 452 E HOH 453 7 HOH HOH 453 E HOH 454 7 HOH HOH 454 E HOH 455 7 HOH HOH 455 E HOH 456 7 HOH HOH 456 E HOH 457 7 HOH HOH 457 E HOH 458 7 HOH HOH 458 E HOH 459 7 HOH HOH 459 E HOH 460 7 HOH HOH 460 E HOH 461 7 HOH HOH 461 E HOH 462 7 HOH HOH 462 E HOH 463 7 HOH HOH 463 E HOH 464 7 HOH HOH 464 E HOH 465 7 HOH HOH 465 E HOH 466 7 HOH HOH 466 E HOH 467 7 HOH HOH 467 E HOH 468 7 HOH HOH 468 E HOH 469 7 HOH HOH 469 E HOH 470 7 HOH HOH 470 E HOH 471 7 HOH HOH 471 E HOH 472 7 HOH HOH 472 E HOH 473 7 HOH HOH 473 E HOH 474 7 HOH HOH 474 E HOH 475 7 HOH HOH 475 E HOH 476 7 HOH HOH 476 E HOH 477 7 HOH HOH 477 E HOH 478 7 HOH HOH 478 E HOH 479 7 HOH HOH 479 E HOH 480 7 HOH HOH 480 E HOH 481 7 HOH HOH 481 E HOH 482 7 HOH HOH 482 E HOH 483 7 HOH HOH 483 E HOH 484 7 HOH HOH 484 E HOH 485 7 HOH HOH 485 E HOH 486 7 HOH HOH 486 E HOH 487 7 HOH HOH 487 E HOH 488 7 HOH HOH 488 E HOH 489 7 HOH HOH 489 E HOH 490 7 HOH HOH 490 E HOH 491 7 HOH HOH 491 E HOH 492 7 HOH HOH 492 E HOH 493 7 HOH HOH 493 E HOH 494 7 HOH HOH 494 E HOH 495 7 HOH HOH 495 E HOH 496 7 HOH HOH 496 E HOH 497 7 HOH HOH 497 E HOH 498 7 HOH HOH 498 E HOH 499 7 HOH HOH 499 E HOH 500 7 HOH HOH 500 E HOH 501 7 HOH HOH 501 E HOH 503 7 HOH HOH 503 E HOH 504 7 HOH HOH 504 E HOH 505 7 HOH HOH 505 E HOH 506 7 HOH HOH 506 E HOH 507 7 HOH HOH 507 E HOH 508 7 HOH HOH 508 E HOH 509 7 HOH HOH 509 E HOH 510 7 HOH HOH 510 E HOH 511 7 HOH HOH 511 E HOH 512 7 HOH HOH 512 E HOH 513 7 HOH HOH 513 E HOH 514 7 HOH HOH 514 E HOH 515 7 HOH HOH 515 E HOH 516 7 HOH HOH 516 E HOH 517 7 HOH HOH 517 E HOH 518 7 HOH HOH 518 E HOH 519 7 HOH HOH 519 E HOH 520 7 HOH HOH 520 E HOH 521 7 HOH HOH 521 E HOH 522 7 HOH HOH 522 E HOH 523 7 HOH HOH 523 E HOH 524 7 HOH HOH 524 E HOH 525 7 HOH HOH 525 E HOH 526 7 HOH HOH 526 E HOH 527 7 HOH HOH 527 E HOH 528 7 HOH HOH 528 E HOH 529 7 HOH HOH 529 E HOH 530 7 HOH HOH 530 E HOH 531 7 HOH HOH 531 E HOH 532 7 HOH HOH 532 E HOH 533 7 HOH HOH 533 E HOH 534 7 HOH HOH 534 E HOH 535 7 HOH HOH 535 E HOH 536 7 HOH HOH 536 E HOH 537 7 HOH HOH 537 E HOH 538 7 HOH HOH 538 E HOH 539 7 HOH HOH 539 E HOH 540 7 HOH HOH 540 E HOH 541 7 HOH HOH 541 E HOH 542 7 HOH HOH 542 E HOH 543 7 HOH HOH 543 E HOH 544 7 HOH HOH 544 E HOH 545 7 HOH HOH 545 E HOH 546 7 HOH HOH 546 E HOH 547 7 HOH HOH 547 E HOH 548 7 HOH HOH 548 E HOH 549 7 HOH HOH 549 E HOH 550 7 HOH HOH 550 E HOH 551 7 HOH HOH 551 E HOH 553 7 HOH HOH 553 E HOH 554 7 HOH HOH 554 E HOH 555 7 HOH HOH 555 E HOH 556 7 HOH HOH 556 E HOH 557 7 HOH HOH 557 E HOH 558 7 HOH HOH 558 E HOH 559 7 HOH HOH 559 E HOH 560 7 HOH HOH 560 E HOH 561 7 HOH HOH 561 E HOH 562 7 HOH HOH 562 E HOH 563 7 HOH HOH 563 E HOH 564 7 HOH HOH 564 E HOH 565 7 HOH HOH 565 E HOH 566 7 HOH HOH 566 E HOH 567 7 HOH HOH 567 E HOH 568 7 HOH HOH 568 E HOH 569 7 HOH HOH 569 E HOH 570 7 HOH HOH 570 E HOH 572 7 HOH HOH 572 E HOH 573 7 HOH HOH 573 E HOH 574 7 HOH HOH 574 E HOH 575 7 HOH HOH 575 E HOH 577 7 HOH HOH 577 E HOH 578 7 HOH HOH 578 E HOH 579 7 HOH HOH 579 E HOH 580 7 HOH HOH 580 E HOH 581 7 HOH HOH 581 E HOH 582 7 HOH HOH 582 E HOH 584 7 HOH HOH 584 E HOH 585 7 HOH HOH 585 E HOH 586 7 HOH HOH 586 E HOH 588 7 HOH HOH 588 E HOH 589 7 HOH HOH 589 E HOH 590 7 HOH HOH 590 E HOH 591 7 HOH HOH 591 E HOH 592 7 HOH HOH 592 E HOH 593 7 HOH HOH 593 E HOH 594 7 HOH HOH 594 E HOH 595 7 HOH HOH 595 E HOH 596 7 HOH HOH 596 E HOH 597 7 HOH HOH 597 E HOH 598 7 HOH HOH 598 E HOH 599 7 HOH HOH 599 E HOH 600 7 HOH HOH 600 E HOH 601 7 HOH HOH 601 E HOH 602 7 HOH HOH 602 E HOH 603 7 HOH HOH 603 E HOH 604 7 HOH HOH 604 E HOH 605 7 HOH HOH 605 E HOH 606 7 HOH HOH 606 E HOH 607 7 HOH HOH 607 E HOH 608 7 HOH HOH 608 E HOH 609 7 HOH HOH 609 E HOH 610 7 HOH HOH 610 E HOH 611 7 HOH HOH 611 E HOH 612 7 HOH HOH 612 E HOH 613 7 HOH HOH 613 E HOH 614 7 HOH HOH 614 E HOH 615 7 HOH HOH 615 E HOH 616 7 HOH HOH 616 E HOH 617 7 HOH HOH 617 E HOH 618 7 HOH HOH 618 E HOH 619 7 HOH HOH 619 E HOH 620 7 HOH HOH 620 E HOH 621 7 HOH HOH 621 E HOH 622 7 HOH HOH 622 E HOH 623 7 HOH HOH 623 E HOH 624 7 HOH HOH 624 E HOH 625 7 HOH HOH 625 E HOH 626 7 HOH HOH 626 E HOH 627 7 HOH HOH 627 E HOH 629 7 HOH HOH 629 E HOH 630 7 HOH HOH 630 E HOH 631 7 HOH HOH 631 E HOH 632 7 HOH HOH 632 E HOH 338 7 HOH HOH 338 I HOH 375 7 HOH HOH 375 I HOH 436 7 HOH HOH 436 I HOH 628 7 HOH HOH 628 I ALA 1 n 1 ALA 1 E ALA 2 n 2 ALA 2 E SER 3 n 3 SER 3 E GLY 4 n 4 GLY 4 E VAL 5 n 5 VAL 5 E ALA 6 n 6 ALA 6 E THR 7 n 7 THR 7 E ASN 8 n 8 ASN 8 E THR 9 n 9 THR 9 E PRO 10 n 10 PRO 10 E THR 11 n 11 THR 11 E ALA 12 n 12 ALA 12 E ASN 13 n 13 ASN 13 E ASP 14 n 14 ASP 14 E GLU 15 n 15 GLU 15 E GLU 16 n 16 GLU 16 E TYR 17 n 17 TYR 17 E ILE 18 n 18 ILE 18 E THR 19 n 19 THR 19 E PRO 20 n 20 PRO 20 E VAL 21 n 21 VAL 21 E THR 22 n 22 THR 22 E ILE 23 n 23 ILE 23 E GLY 24 n 24 GLY 24 E GLY 25 n 25 GLY 25 E THR 26 n 26 THR 26 E THR 27 n 27 THR 27 E LEU 28 n 28 LEU 28 E ASN 29 n 29 ASN 29 E LEU 30 n 30 LEU 30 E ASN 31 n 31 ASN 31 E PHE 32 n 32 PHE 32 E ASP 33 n 33 ASP 33 E THR 34 n 34 THR 34 E GLY 35 n 35 GLY 35 E SER 36 n 36 SER 36 E ALA 37 n 37 ALA 37 E ASP 38 n 38 ASP 38 E LEU 39 n 39 LEU 39 E TRP 40 n 40 TRP 40 E VAL 41 n 41 VAL 41 E PHE 42 n 42 PHE 42 E SER 43 n 43 SER 43 E THR 44 n 44 THR 44 E GLU 45 n 45 GLU 45 E LEU 46 n 46 LEU 46 E PRO 47 n 47 PRO 47 E ALA 48 n 48 ALA 48 E SER 49 n 49 SER 49 E GLN 50 n 50 GLN 50 E GLN 51 n 51 GLN 51 E SER 52 n 52 SER 52 E GLY 53 n 53 GLY 53 E HIS 54 n 54 HIS 54 E SER 55 n 55 SER 55 E VAL 56 n 56 VAL 56 E TYR 57 n 57 TYR 57 E ASN 58 n 58 ASN 58 E PRO 59 n 59 PRO 59 E SER 60 n 60 SER 60 E ALA 61 n 61 ALA 61 E THR 62 n 62 THR 62 E GLY 63 n 63 GLY 63 E LYS 64 n 64 LYS 64 E GLU 65 n 65 GLU 65 E LEU 66 n 66 LEU 66 E SER 67 n 67 SER 67 E GLY 68 n 68 GLY 68 E TYR 69 n 69 TYR 69 E THR 70 n 70 THR 70 E TRP 71 n 71 TRP 71 E SER 72 n 72 SER 72 E ILE 73 n 73 ILE 73 E SER 74 n 74 SER 74 E TYR 75 n 75 TYR 75 E GLY 76 n 76 GLY 76 E ASP 77 n 77 ASP 77 E GLY 78 n 78 GLY 78 E SER 79 n 79 SER 79 E SER 80 n 80 SER 80 E ALA 81 n 81 ALA 81 E SER 82 n 82 SER 82 E GLY 83 n 83 GLY 83 E ASN 84 n 84 ASN 84 E VAL 85 n 85 VAL 85 E PHE 86 n 86 PHE 86 E THR 87 n 87 THR 87 E ASP 88 n 88 ASP 88 E SER 89 n 89 SER 89 E VAL 90 n 90 VAL 90 E THR 91 n 91 THR 91 E VAL 92 n 92 VAL 92 E GLY 93 n 93 GLY 93 E GLY 94 n 94 GLY 94 E VAL 95 n 95 VAL 95 E THR 96 n 96 THR 96 E ALA 97 n 97 ALA 97 E HIS 98 n 98 HIS 98 E GLY 99 n 99 GLY 99 E GLN 100 n 100 GLN 100 E ALA 101 n 101 ALA 101 E VAL 102 n 102 VAL 102 E GLN 103 n 103 GLN 103 E ALA 104 n 104 ALA 104 E ALA 105 n 105 ALA 105 E GLN 106 n 106 GLN 106 E GLN 107 n 107 GLN 107 E ILE 108 n 108 ILE 108 E SER 109 n 109 SER 109 E ALA 110 n 110 ALA 110 E GLN 111 n 111 GLN 111 E PHE 112 n 112 PHE 112 E GLN 113 n 113 GLN 113 E GLN 114 n 114 GLN 114 E ASP 115 n 115 ASP 115 E THR 116 n 116 THR 116 E ASN 117 n 117 ASN 117 E ASN 118 n 118 ASN 118 E ASP 119 n 119 ASP 119 E GLY 120 n 120 GLY 120 E LEU 121 n 121 LEU 121 E LEU 122 n 122 LEU 122 E GLY 123 n 123 GLY 123 E LEU 124 n 124 LEU 124 E ALA 125 n 125 ALA 125 E PHE 126 n 126 PHE 126 E SER 127 n 127 SER 127 E SER 128 n 128 SER 128 E ILE 129 n 129 ILE 129 E ASN 130 n 130 ASN 130 E THR 131 n 131 THR 131 E VAL 132 n 132 VAL 132 E GLN 133 n 133 GLN 133 E PRO 134 n 134 PRO 134 E GLN 135 n 135 GLN 135 E SER 136 n 136 SER 136 E GLN 137 n 137 GLN 137 E THR 138 n 138 THR 138 E THR 139 n 139 THR 139 E PHE 140 n 140 PHE 140 E PHE 141 n 141 PHE 141 E ASP 142 n 142 ASP 142 E THR 143 n 143 THR 143 E VAL 144 n 144 VAL 144 E LYS 145 n 145 LYS 145 E SER 146 n 146 SER 146 E SER 147 n 147 SER 147 E LEU 148 n 148 LEU 148 E ALA 149 n 149 ALA 149 E GLN 150 n 150 GLN 150 E PRO 151 n 151 PRO 151 E LEU 152 n 152 LEU 152 E PHE 153 n 153 PHE 153 E ALA 154 n 154 ALA 154 E VAL 155 n 155 VAL 155 E ALA 156 n 156 ALA 156 E LEU 157 n 157 LEU 157 E LYS 158 n 158 LYS 158 E HIS 159 n 159 HIS 159 E GLN 160 n 160 GLN 160 E GLN 161 n 161 GLN 161 E PRO 162 n 162 PRO 162 E GLY 163 n 163 GLY 163 E VAL 164 n 164 VAL 164 E TYR 165 n 165 TYR 165 E ASP 166 n 166 ASP 166 E PHE 167 n 167 PHE 167 E GLY 168 n 168 GLY 168 E PHE 169 n 169 PHE 169 E ILE 170 n 170 ILE 170 E ASP 171 n 171 ASP 171 E SER 172 n 172 SER 172 E SER 173 n 173 SER 173 E LYS 174 n 174 LYS 174 E TYR 175 n 175 TYR 175 E THR 176 n 176 THR 176 E GLY 177 n 177 GLY 177 E SER 178 n 178 SER 178 E LEU 179 n 179 LEU 179 E THR 180 n 180 THR 180 E TYR 181 n 181 TYR 181 E THR 182 n 182 THR 182 E GLY 183 n 183 GLY 183 E VAL 184 n 184 VAL 184 E ASP 185 n 185 ASP 185 E ASN 186 n 186 ASN 186 E SER 187 n 187 SER 187 E GLN 188 n 188 GLN 188 E GLY 189 n 189 GLY 189 E PHE 190 n 190 PHE 190 E TRP 191 n 191 TRP 191 E SER 192 n 192 SER 192 E PHE 193 n 193 PHE 193 E ASN 194 n 194 ASN 194 E VAL 195 n 195 VAL 195 E ASP 196 n 196 ASP 196 E SER 197 n 197 SER 197 E TYR 198 n 198 TYR 198 E THR 199 n 199 THR 199 E ALA 200 n 200 ALA 200 E GLY 201 n 201 GLY 201 E SER 202 n 202 SER 202 E GLN 203 n 203 GLN 203 E SER 204 n 204 SER 204 E GLY 205 n 205 GLY 205 E ASP 206 n 206 ASP 206 E GLY 207 n 207 GLY 207 E PHE 208 n 208 PHE 208 E SER 209 n 209 SER 209 E GLY 210 n 210 GLY 210 E ILE 211 n 211 ILE 211 E ALA 212 n 212 ALA 212 E ASP 213 n 213 ASP 213 E THR 214 n 214 THR 214 E GLY 215 n 215 GLY 215 E THR 216 n 216 THR 216 E THR 217 n 217 THR 217 E LEU 218 n 218 LEU 218 E LEU 219 n 219 LEU 219 E LEU 220 n 220 LEU 220 E LEU 221 n 221 LEU 221 E ASP 222 n 222 ASP 222 E ASP 223 n 223 ASP 223 E SER 224 n 224 SER 224 E VAL 225 n 225 VAL 225 E VAL 226 n 226 VAL 226 E SER 227 n 227 SER 227 E GLN 228 n 228 GLN 228 E TYR 229 n 229 TYR 229 E TYR 230 n 230 TYR 230 E SER 231 n 231 SER 231 E GLN 232 n 232 GLN 232 E VAL 233 n 233 VAL 233 E SER 234 n 234 SER 234 E GLY 235 n 235 GLY 235 E ALA 236 n 236 ALA 236 E GLN 237 n 237 GLN 237 E GLN 238 n 238 GLN 238 E ASP 239 n 239 ASP 239 E SER 240 n 240 SER 240 E ASN 241 n 241 ASN 241 E ALA 242 n 242 ALA 242 E GLY 243 n 243 GLY 243 E GLY 244 n 244 GLY 244 E TYR 245 n 245 TYR 245 E VAL 246 n 246 VAL 246 E PHE 247 n 247 PHE 247 E ASP 248 n 248 ASP 248 E CYS 249 n 249 CYS 249 E SER 250 n 250 SER 250 E THR 251 n 251 THR 251 E ASN 252 n 252 ASN 252 E LEU 253 n 253 LEU 253 E PRO 254 n 254 PRO 254 E ASP 255 n 255 ASP 255 E PHE 256 n 256 PHE 256 E SER 257 n 257 SER 257 E VAL 258 n 258 VAL 258 E SER 259 n 259 SER 259 E ILE 260 n 260 ILE 260 E SER 261 n 261 SER 261 E GLY 262 n 262 GLY 262 E TYR 263 n 263 TYR 263 E THR 264 n 264 THR 264 E ALA 265 n 265 ALA 265 E THR 266 n 266 THR 266 E VAL 267 n 267 VAL 267 E PRO 268 n 268 PRO 268 E GLY 269 n 269 GLY 269 E SER 270 n 270 SER 270 E LEU 271 n 271 LEU 271 E ILE 272 n 272 ILE 272 E ASN 273 n 273 ASN 273 E TYR 274 n 274 TYR 274 E GLY 275 n 275 GLY 275 E PRO 276 n 276 PRO 276 E SER 277 n 277 SER 277 E GLY 278 n 278 GLY 278 E ASP 279 n 279 ASP 279 E GLY 280 n 280 GLY 280 E SER 281 n 281 SER 281 E THR 282 n 282 THR 282 E CYS 283 n 283 CYS 283 E LEU 284 n 284 LEU 284 E GLY 285 n 285 GLY 285 E GLY 286 n 286 GLY 286 E ILE 287 n 287 ILE 287 E GLN 288 n 288 GLN 288 E SER 289 n 289 SER 289 E ASN 290 n 290 ASN 290 E SER 291 n 291 SER 291 E GLY 292 n 292 GLY 292 E ILE 293 n 293 ILE 293 E GLY 294 n 294 GLY 294 E PHE 295 n 295 PHE 295 E SER 296 n 296 SER 296 E ILE 297 n 297 ILE 297 E PHE 298 n 298 PHE 298 E GLY 299 n 299 GLY 299 E ASP 300 n 300 ASP 300 E ILE 301 n 301 ILE 301 E PHE 302 n 302 PHE 302 E LEU 303 n 303 LEU 303 E LYS 304 n 304 LYS 304 E SER 305 n 305 SER 305 E GLN 306 n 306 GLN 306 E TYR 307 n 307 TYR 307 E VAL 308 n 308 VAL 308 E VAL 309 n 309 VAL 309 E PHE 310 n 310 PHE 310 E ASP 311 n 311 ASP 311 E SER 312 n 312 SER 312 E ASP 313 n 313 ASP 313 E GLY 314 n 314 GLY 314 E PRO 315 n 315 PRO 315 E GLN 316 n 316 GLN 316 E LEU 317 n 317 LEU 317 E GLY 318 n 318 GLY 318 E PHE 319 n 319 PHE 319 E ALA 320 n 320 ALA 320 E PRO 321 n 321 PRO 321 E GLN 322 n 322 GLN 322 E ALA 323 n 323 ALA 323 E IVA 4 n 1 IVA 4 I VAL 3 n 2 VAL 3 I VAL 2 n 3 VAL 2 I DFI 1 n 4 DFI 1 I NME 1 n 5 A NME 1 I author_and_software_defined_assembly PISA 2 dimeric 1770 -13 12660 E SER 3 GLYCOSYLATION SITE A SER 3 SER E THR 7 GLYCOSYLATION SITE A THR 7 THR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 E N VAL 267 A N VAL 267 E O PHE 256 A O PHE 256 E O SER 259 A O SER 259 E N ASP 196 A N ASP 196 E N ALA 200 A N ALA 200 E O GLN 203 A O GLN 203 E O SER 209 A O SER 209 E N SER 296 A N SER 296 E N ILE 297 A N ILE 297 E O LEU 220 A O LEU 220 E O LEU 219 A O LEU 219 E N GLN 288 A N GLN 288 E N ASP 239 A N ASP 239 E O GLY 244 A O GLY 244 E O PHE 247 A O PHE 247 E N CYS 283 A N CYS 283 E O LEU 284 A O LEU 284 E N TYR 274 A N TYR 274 1 E HOH 563 G HOH 1 E HOH 584 G HOH 1 E HOH 585 G HOH 1 E O1 HSY 399 D O1 HSY 1 1 N 1 E C2 HSY 399 WRONG HAND 1 E C3 HSY 399 WRONG HAND 1 E C4 HSY 399 WRONG HAND 1 E E OH O4 TYR SO4 175 365 2.11 1 I DFI 1 29.99 1 13.29 1.70 123.20 136.49 E E E O C N SER SER GLY 52 52 53 Y 1 5.57 0.90 118.30 123.87 E E E CB CG OD2 ASP ASP ASP 119 119 119 N 1 -4.96 0.70 120.80 115.84 E E E CB CG CD1 PHE PHE PHE 141 141 141 N 1 -9.66 1.60 110.90 101.24 E E E CG1 CB CG2 VAL VAL VAL 155 155 155 N 1 6.19 0.90 118.30 124.49 E E E CB CG OD1 ASP ASP ASP 206 206 206 N 1 7.14 0.90 118.30 125.44 E E E CB CG OD1 ASP ASP ASP 222 222 222 N 1 -6.23 0.90 118.30 112.07 E E E CB CG OD2 ASP ASP ASP 222 222 222 N A 1 17.25 2.20 117.20 134.45 I I I CA C N DFI DFI NME 1 1 1 Y 1 E PHE 208 -171.10 -177.89 1 E ASP 279 -155.33 86.10 1 I DFI 1 -69.92 -146.42 0.131 1.8 8.0 22464 1 1.0 1.8 8.0 295 2726 30 0 2401 0.016 refinement PROLSQ ACID PROTEINASE (PENICILLOPEPSIN) (E.C.3.4.23.20) COMPLEX WITH A TETRAHEDRAL TRANSITION STATE MIMIC INHIBITOR: ISOVALERYL (IVA)-VAL-VAL-DIFLUOROSTATINE-N-METHYLAMINE CRYSTALLOGRAPHIC ANALYSIS OF TRANSITION STATE MIMICS BOUND TO PENICILLOPEPSIN: DIFLUOROSTATINE-AND DIFLUOROSTATONE-CONTAINING PEPTIDES 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 7 N N 7 N N E ALA 12 A ALA 12 HELX_P E GLU 15 A GLU 15 5 1 4 E PRO 47 A PRO 47 HELX_P E GLN 51 A GLN 51 5 2 5 E ASN 58 A ASN 58 HELX_P E GLY 63 A GLY 63 1 3 6 E SER 109 A SER 109 HELX_P E ASP 115 A ASP 115 1 4 7 E PHE 126 A PHE 126 HELX_P E ASN 130 A ASN 130 5 5 5 E THR 139 A THR 139 HELX_P E LYS 145 A LYS 145 1 6 7 E ASP 171 A ASP 171 HELX_P E LYS 174 A LYS 174 5 7 4 E ASP 222 A ASP 222 HELX_P E SER 231 A SER 231 1 8 10 E PRO 268 A PRO 268 HELX_P E LEU 271 A LEU 271 5 9 4 E GLY 299 A GLY 299 HELX_P E LYS 304 A LYS 304 1 10 6 disulf 2.067 E CYS 249 A SG CYS 249 1_555 E CYS 283 A SG CYS 283 1_555 covale 1.432 one O-Glycosylation E SER 3 A OG SER 3 1_555 E MAN 328 C C1 MAN 1_555 covale 1.405 one E THR 7 A OG1 THR 7 1_555 E HSY 399 D C5 HSY 1_555 covale 1.316 both A I NME 1 B N NME 5 1_555 I DFI 1 B C DFI 4 1_555 covale 1.344 both I DFI 1 B N DFI 4 1_555 I VAL 2 B C VAL 3 1_555 covale 1.306 both I VAL 3 B N VAL 2 1_555 I IVA 4 B C IVA 1 1_555 HYDROLASE/HYDROLASE INHIBITOR ACID PROTEINASE, HYDROLASE-HYDROLASE INHIBITOR complex E GLN 133 A GLN 133 1 E PRO 134 A PRO 134 1.43 E GLY 314 A GLY 314 1 E PRO 315 A PRO 315 -2.26 PENP_PENJA UNP 1 1 P00798 AASGVATNTPTANDEEYITPVTIGGTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELSGYTWSISYGDGSS ASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSSLAQPLFAVALKHQ QPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDS NAGGYVFDCSTNLPDFSVSISGYTATVPGSLINYGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFA PQA 1APW PDB 2 1APW 1 323 1APW 1 323 P00798 E 1 1 323 4 1 1APW 4 1 1APW A I 2 1 5 7 4 anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel E TYR 263 A TYR 263 E VAL 267 A VAL 267 E PHE 256 A PHE 256 E ILE 260 A ILE 260 E SER 192 A SER 192 E ALA 200 A ALA 200 E GLN 203 A GLN 203 E ALA 212 A ALA 212 E SER 296 A SER 296 E PHE 298 A PHE 298 E LEU 219 A LEU 219 E LEU 221 A LEU 221 E ILE 287 A ILE 287 E SER 289 A SER 289 E GLN 237 A GLN 237 E ASP 239 A ASP 239 E GLY 244 A GLY 244 E ASP 248 A ASP 248 E THR 282 A THR 282 E GLY 285 A GLY 285 E ASN 273 A ASN 273 E PRO 276 A PRO 276 5 C 1 2 1