1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Politou, A.S.
Pastore, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
276
189
202
10.1006/jmbi.1997.1521
9514727
SH3 in muscles: solution structure of the SH3 domain from nebulin.
1998
10.2210/pdb1ark/pdb
pdb_00001ark
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
6614.411
NEBULIN
SH3 DOMAIN, RESIDUES 6610 - 6669
1
man
polymer
no
no
TAGKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI
TAGKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
BL21 (DE3) PLYSS
9606
Homo sapiens
BL21 (DE3) PLYSS
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PET
BL21
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1998-01-28
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1997-08-07
REL
LEAST RESTRAINT VIOLATION
100
15
NOESY
TOCSY
DQF-COSY
6.9
300
K
DISTANCE GEOMETRY, SIMULATED ANNEALING
BRUNGER
refinement
X-PLOR
3.1
structure solution
BRUKER UXNMR
UXNMR
500
Bruker
AMX
600
Bruker
AMX
THR
1
n
1
THR
1
A
ALA
2
n
2
ALA
2
A
GLY
3
n
3
GLY
3
A
LYS
4
n
4
LYS
4
A
ILE
5
n
5
ILE
5
A
PHE
6
n
6
PHE
6
A
ARG
7
n
7
ARG
7
A
ALA
8
n
8
ALA
8
A
MET
9
n
9
MET
9
A
TYR
10
n
10
TYR
10
A
ASP
11
n
11
ASP
11
A
TYR
12
n
12
TYR
12
A
MET
13
n
13
MET
13
A
ALA
14
n
14
ALA
14
A
ALA
15
n
15
ALA
15
A
ASP
16
n
16
ASP
16
A
ALA
17
n
17
ALA
17
A
ASP
18
n
18
ASP
18
A
GLU
19
n
19
GLU
19
A
VAL
20
n
20
VAL
20
A
SER
21
n
21
SER
21
A
PHE
22
n
22
PHE
22
A
LYS
23
n
23
LYS
23
A
ASP
24
n
24
ASP
24
A
GLY
25
n
25
GLY
25
A
ASP
26
n
26
ASP
26
A
ALA
27
n
27
ALA
27
A
ILE
28
n
28
ILE
28
A
ILE
29
n
29
ILE
29
A
ASN
30
n
30
ASN
30
A
VAL
31
n
31
VAL
31
A
GLN
32
n
32
GLN
32
A
ALA
33
n
33
ALA
33
A
ILE
34
n
34
ILE
34
A
ASP
35
n
35
ASP
35
A
GLU
36
n
36
GLU
36
A
GLY
37
n
37
GLY
37
A
TRP
38
n
38
TRP
38
A
MET
39
n
39
MET
39
A
TYR
40
n
40
TYR
40
A
GLY
41
n
41
GLY
41
A
THR
42
n
42
THR
42
A
VAL
43
n
43
VAL
43
A
GLN
44
n
44
GLN
44
A
ARG
45
n
45
ARG
45
A
THR
46
n
46
THR
46
A
GLY
47
n
47
GLY
47
A
ARG
48
n
48
ARG
48
A
THR
49
n
49
THR
49
A
GLY
50
n
50
GLY
50
A
MET
51
n
51
MET
51
A
LEU
52
n
52
LEU
52
A
PRO
53
n
53
PRO
53
A
ALA
54
n
54
ALA
54
A
ASN
55
n
55
ASN
55
A
TYR
56
n
56
TYR
56
A
VAL
57
n
57
VAL
57
A
GLU
58
n
58
GLU
58
A
ALA
59
n
59
ALA
59
A
ILE
60
n
60
ILE
60
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
15
A
A
HG1
OG1
THR
THR
42
49
1.59
1
A
ARG
7
0.317
SIDE CHAIN
1
A
ARG
45
0.168
SIDE CHAIN
1
A
ARG
48
0.303
SIDE CHAIN
2
A
ARG
7
0.287
SIDE CHAIN
2
A
ARG
45
0.312
SIDE CHAIN
2
A
ARG
48
0.293
SIDE CHAIN
3
A
ARG
7
0.304
SIDE CHAIN
3
A
ARG
45
0.250
SIDE CHAIN
3
A
ARG
48
0.231
SIDE CHAIN
4
A
ARG
7
0.248
SIDE CHAIN
4
A
ARG
45
0.283
SIDE CHAIN
4
A
ARG
48
0.144
SIDE CHAIN
5
A
ARG
7
0.304
SIDE CHAIN
5
A
ARG
45
0.199
SIDE CHAIN
5
A
ARG
48
0.298
SIDE CHAIN
6
A
ARG
7
0.277
SIDE CHAIN
6
A
ARG
45
0.084
SIDE CHAIN
6
A
ARG
48
0.260
SIDE CHAIN
7
A
ARG
7
0.317
SIDE CHAIN
7
A
ARG
45
0.158
SIDE CHAIN
7
A
ARG
48
0.182
SIDE CHAIN
8
A
ARG
7
0.309
SIDE CHAIN
8
A
ARG
45
0.241
SIDE CHAIN
8
A
ARG
48
0.296
SIDE CHAIN
9
A
ARG
7
0.234
SIDE CHAIN
9
A
ARG
45
0.228
SIDE CHAIN
9
A
ARG
48
0.287
SIDE CHAIN
10
A
ARG
7
0.156
SIDE CHAIN
10
A
ARG
45
0.304
SIDE CHAIN
10
A
ARG
48
0.315
SIDE CHAIN
11
A
ARG
7
0.174
SIDE CHAIN
11
A
ARG
45
0.196
SIDE CHAIN
11
A
ARG
48
0.313
SIDE CHAIN
12
A
ARG
7
0.182
SIDE CHAIN
12
A
ARG
45
0.304
SIDE CHAIN
12
A
ARG
48
0.315
SIDE CHAIN
13
A
ARG
7
0.280
SIDE CHAIN
13
A
ARG
45
0.317
SIDE CHAIN
13
A
ARG
48
0.304
SIDE CHAIN
14
A
ARG
7
0.239
SIDE CHAIN
14
A
ARG
45
0.306
SIDE CHAIN
14
A
ARG
48
0.316
SIDE CHAIN
15
A
ARG
7
0.281
SIDE CHAIN
15
A
ARG
45
0.281
SIDE CHAIN
15
A
ARG
48
0.265
SIDE CHAIN
1
A
ILE
5
54.91
169.56
1
A
ASP
16
-147.69
-155.86
1
A
GLU
19
-103.35
-168.62
1
A
ILE
29
-106.62
-135.24
1
A
ASN
30
-169.03
79.29
1
A
ALA
33
-172.22
103.70
1
A
ASP
35
59.99
155.53
1
A
GLU
36
38.28
38.85
1
A
VAL
43
-55.84
107.68
1
A
THR
46
-140.05
-47.30
2
A
ALA
2
53.27
-150.20
2
A
ILE
29
-126.98
-143.12
2
A
ASN
30
-157.15
76.82
2
A
GLN
32
-133.45
-72.25
2
A
ALA
33
59.86
116.18
2
A
ASP
35
-177.81
-177.43
2
A
TRP
38
59.67
140.07
2
A
TYR
56
-95.27
-62.60
3
A
ALA
2
-105.55
-82.42
3
A
LYS
4
45.14
-170.45
3
A
VAL
20
-120.11
-151.81
3
A
ILE
29
-64.74
-156.53
3
A
ILE
34
-59.80
-72.05
3
A
ASP
35
-176.37
-63.74
3
A
TRP
38
55.25
170.99
3
A
THR
46
-92.11
-68.16
4
A
LYS
4
-77.83
-169.43
4
A
ILE
29
-73.71
-159.19
4
A
VAL
31
-73.43
-80.96
4
A
ILE
34
-73.16
-80.38
4
A
ASP
35
-169.53
18.07
4
A
TYR
56
-131.78
-40.15
5
A
ILE
5
61.25
141.59
5
A
GLU
19
-118.14
-165.46
5
A
ALA
33
53.31
80.76
5
A
ASP
35
65.42
-69.92
5
A
TRP
38
52.56
179.04
5
A
VAL
43
-61.98
97.45
5
A
ARG
48
-70.54
-168.93
6
A
LYS
4
-69.58
-171.59
6
A
ASP
11
60.36
71.63
6
A
ASP
16
-95.77
-151.03
6
A
ILE
29
-58.88
-169.84
6
A
VAL
31
-80.84
-158.42
6
A
GLN
32
-160.49
-156.89
6
A
ALA
33
-137.23
-152.46
6
A
ILE
34
-128.45
-85.79
6
A
ASP
35
-108.81
-64.20
6
A
MET
39
-146.30
-152.13
6
A
ARG
45
-75.85
-71.56
7
A
ASP
16
-175.64
-35.02
7
A
ALA
17
-176.64
-32.36
7
A
ASP
24
-70.00
83.51
7
A
ILE
29
-131.01
-145.59
7
A
MET
39
-123.44
-163.12
8
A
ILE
5
47.75
175.65
8
A
ASP
11
-59.13
92.01
8
A
ASP
16
-109.21
-82.04
8
A
ALA
17
-170.36
-54.25
8
A
VAL
20
-113.46
-156.75
8
A
ILE
29
-112.93
-142.32
8
A
THR
46
-131.77
-59.57
9
A
ILE
5
57.59
160.91
9
A
ARG
7
-170.03
138.12
9
A
ASP
16
-154.33
-69.73
9
A
ALA
17
-163.63
-34.11
9
A
VAL
20
-110.36
-152.72
9
A
ILE
29
-117.96
-140.03
9
A
ASN
30
-172.19
69.83
9
A
GLN
32
-144.53
-65.61
9
A
ALA
33
61.58
133.91
9
A
ASP
35
66.71
-66.54
9
A
TRP
38
52.90
176.69
9
A
ARG
45
-66.91
-70.31
10
A
LYS
4
-78.17
-168.99
10
A
ASP
11
58.68
90.59
10
A
ALA
14
57.23
158.57
10
A
ASP
16
-141.02
-155.66
10
A
ASP
35
-171.73
-161.99
10
A
TRP
38
55.07
169.97
10
A
MET
39
-149.61
-147.96
11
A
ILE
5
54.94
171.74
11
A
ALA
14
55.15
166.87
11
A
ASP
16
-149.86
-157.86
11
A
VAL
20
-105.24
-162.62
11
A
ASP
24
-69.83
81.73
11
A
VAL
31
56.28
-86.64
11
A
GLN
32
-171.09
139.93
11
A
TYR
56
-88.29
-73.66
12
A
ILE
34
-78.81
-70.12
12
A
ASP
35
-178.85
-47.59
12
A
GLU
36
-59.29
-82.47
12
A
VAL
43
-57.14
109.83
12
A
ARG
45
-75.83
-74.07
12
A
TYR
56
-98.52
-60.95
13
A
ALA
2
-175.30
72.42
13
A
ILE
5
58.10
159.66
13
A
ASP
16
-130.72
-154.85
13
A
VAL
20
-113.70
-165.27
13
A
ILE
29
-60.70
-160.23
13
A
ASN
30
-160.79
79.10
13
A
ASP
35
65.41
-72.19
13
A
GLU
36
-88.11
47.05
13
A
TRP
38
52.99
178.52
13
A
VAL
57
-56.30
170.33
14
A
LYS
4
-56.05
-168.77
14
A
VAL
20
-115.79
-169.95
14
A
ASP
24
-65.96
93.06
14
A
ILE
29
-171.61
-35.58
14
A
ASN
30
-46.66
-78.64
14
A
VAL
31
-95.13
-109.21
14
A
GLN
32
-176.26
-152.76
14
A
ASP
35
61.75
146.08
14
A
GLU
36
54.49
98.33
14
A
TRP
38
54.80
171.30
14
A
MET
39
-122.56
-167.84
14
A
TYR
56
-98.94
-60.69
15
A
ALA
2
-152.88
30.38
15
A
ASP
24
-46.73
94.64
15
A
ILE
29
-69.07
-152.77
15
A
VAL
31
-100.98
-83.49
15
A
ALA
33
-165.92
-166.59
15
A
ILE
34
65.96
-60.63
15
A
ASP
35
-56.09
171.49
15
A
GLU
36
54.25
-168.80
15
A
TYR
56
-106.20
-66.99
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
SH3 DOMAIN FROM HUMAN NEBULIN, NMR, 15 STRUCTURES
1
Y
N
A
ALA
54
A
ALA
54
HELX_P
ONE TURN
A
TYR
56
A
TYR
56
5
H
3
TRANSFERASE
TRANSFERASE, SH3 DOMAIN, NEBULIN, Z-DISK ASSEMBLY, ACTIN-BINDING
NEBU_HUMAN
UNP
1
1
P20929
VAYRKDAKENLHYTTVADRPDIKKATQAAKQASEVEYRAKHRKEGSHGLSMLGRPDIEMAKKAAKLSSQVKYRENFDKEK
GKTPKYNPKDSQLYKVMKDANNLASEVKYKADLKKLHKPVTDMKESLIMNHVLNTSQLASSYQYKKKYEKSKGHYHTIPD
NLEQLHLKEATELQSIVKYKEKYEKERGKPMLDFETPTYITAKESQQMQSGKEYRKDYEESIKGRNLTGLEVTPALLHVK
YATKIASEKEYRKDLEESIRGKGLTEMEDTPDMLRAKNATQILNEKEYKRDLELEVKGRGLNAMANETPDFMRARNATDI
ASQIKYKQSAEMEKANFTSVVDTPEIIHAQQVKNLSSQKKYKEDAEKSMSYYETVLDTPEIQRVRENQKNFSLLQYQCDL
KNSKGKITVVQDTPEILRVKENQKNFSSVLYKEDVSPGTAIGKTPEMMRVKQTQDHISSVKYKEAIGQGTPIPDLPEVKR
VKETQKHISSVMYKENLGTGIPTTVTPEIERVKRNQENFSSVLYKENLGKGIPTPITPEMERVKRNQENFSSVLYKENMG
KGTPLPVTPEMERVKHNQENISSVLYKENMGKGTPLPVTPEMERVKHNQENISSVLYKENVGKATATPVTPEMQRVKRNQ
ENISSVLYKENLGKATPTPFTPEMERVKRNQENFSSVLYKENMRKATPTPVTPEMERAKRNQENISSVLYSDSFRKQIQG
KAAYVLDTPEMRRVRETQRHISTVKYHEDFEKHKGCFTPVVTDPITERVKKNMQDFSDINYRGIQRKVVEMEQKRNDQDQ
ETITGLRVWRTNPGSVFDYDPAEDNIQSRSLHMINVQAQRRSREQSRSASALSISGGEEKSEHSEAPDHHLSTYSDGGVF
AVSTAYKHAKTTELPQQRSSSVATQQTTVSSIPSHPSTAGKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTV
QRTGRTGMLPANYVEAI
918
977
1ARK
1
60
P20929
A
1
1
60
1
1
1
1
1
1
2
A
PHE
6
A
PHE
6
A
MET
9
A
MET
9
A
GLN
32
A
GLN
32
A
ILE
34
A
ILE
34
A
ALA
27
A
ALA
27
A
ILE
29
A
ILE
29
A
TRP
38
A
TRP
38
A
VAL
43
A
VAL
43
A
VAL
57
A
VAL
57
A
ILE
60
A
ILE
60
A
ARG
48
A
ARG
48
A
PRO
53
A
PRO
53
A
ASP
11
A
ASP
11
A
ALA
14
A
ALA
14
A
SER
21
A
SER
21
A
ASP
24
A
ASP
24
1
P 1