1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Politou, A.S. Pastore, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 276 189 202 10.1006/jmbi.1997.1521 9514727 SH3 in muscles: solution structure of the SH3 domain from nebulin. 1998 10.2210/pdb1ark/pdb pdb_00001ark 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 6614.411 NEBULIN SH3 DOMAIN, RESIDUES 6610 - 6669 1 man polymer no no TAGKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI TAGKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia Escherichia coli sample BL21 (DE3) PLYSS 9606 Homo sapiens BL21 (DE3) PLYSS 469008 Escherichia coli BL21(DE3) BL21 (DE3) PET BL21 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1998-01-28 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site Y BNL 1997-08-07 REL LEAST RESTRAINT VIOLATION 100 15 NOESY TOCSY DQF-COSY 6.9 300 K DISTANCE GEOMETRY, SIMULATED ANNEALING BRUNGER refinement X-PLOR 3.1 structure solution BRUKER UXNMR UXNMR 500 Bruker AMX 600 Bruker AMX THR 1 n 1 THR 1 A ALA 2 n 2 ALA 2 A GLY 3 n 3 GLY 3 A LYS 4 n 4 LYS 4 A ILE 5 n 5 ILE 5 A PHE 6 n 6 PHE 6 A ARG 7 n 7 ARG 7 A ALA 8 n 8 ALA 8 A MET 9 n 9 MET 9 A TYR 10 n 10 TYR 10 A ASP 11 n 11 ASP 11 A TYR 12 n 12 TYR 12 A MET 13 n 13 MET 13 A ALA 14 n 14 ALA 14 A ALA 15 n 15 ALA 15 A ASP 16 n 16 ASP 16 A ALA 17 n 17 ALA 17 A ASP 18 n 18 ASP 18 A GLU 19 n 19 GLU 19 A VAL 20 n 20 VAL 20 A SER 21 n 21 SER 21 A PHE 22 n 22 PHE 22 A LYS 23 n 23 LYS 23 A ASP 24 n 24 ASP 24 A GLY 25 n 25 GLY 25 A ASP 26 n 26 ASP 26 A ALA 27 n 27 ALA 27 A ILE 28 n 28 ILE 28 A ILE 29 n 29 ILE 29 A ASN 30 n 30 ASN 30 A VAL 31 n 31 VAL 31 A GLN 32 n 32 GLN 32 A ALA 33 n 33 ALA 33 A ILE 34 n 34 ILE 34 A ASP 35 n 35 ASP 35 A GLU 36 n 36 GLU 36 A GLY 37 n 37 GLY 37 A TRP 38 n 38 TRP 38 A MET 39 n 39 MET 39 A TYR 40 n 40 TYR 40 A GLY 41 n 41 GLY 41 A THR 42 n 42 THR 42 A VAL 43 n 43 VAL 43 A GLN 44 n 44 GLN 44 A ARG 45 n 45 ARG 45 A THR 46 n 46 THR 46 A GLY 47 n 47 GLY 47 A ARG 48 n 48 ARG 48 A THR 49 n 49 THR 49 A GLY 50 n 50 GLY 50 A MET 51 n 51 MET 51 A LEU 52 n 52 LEU 52 A PRO 53 n 53 PRO 53 A ALA 54 n 54 ALA 54 A ASN 55 n 55 ASN 55 A TYR 56 n 56 TYR 56 A VAL 57 n 57 VAL 57 A GLU 58 n 58 GLU 58 A ALA 59 n 59 ALA 59 A ILE 60 n 60 ILE 60 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 15 A A HG1 OG1 THR THR 42 49 1.59 1 A ARG 7 0.317 SIDE CHAIN 1 A ARG 45 0.168 SIDE CHAIN 1 A ARG 48 0.303 SIDE CHAIN 2 A ARG 7 0.287 SIDE CHAIN 2 A ARG 45 0.312 SIDE CHAIN 2 A ARG 48 0.293 SIDE CHAIN 3 A ARG 7 0.304 SIDE CHAIN 3 A ARG 45 0.250 SIDE CHAIN 3 A ARG 48 0.231 SIDE CHAIN 4 A ARG 7 0.248 SIDE CHAIN 4 A ARG 45 0.283 SIDE CHAIN 4 A ARG 48 0.144 SIDE CHAIN 5 A ARG 7 0.304 SIDE CHAIN 5 A ARG 45 0.199 SIDE CHAIN 5 A ARG 48 0.298 SIDE CHAIN 6 A ARG 7 0.277 SIDE CHAIN 6 A ARG 45 0.084 SIDE CHAIN 6 A ARG 48 0.260 SIDE CHAIN 7 A ARG 7 0.317 SIDE CHAIN 7 A ARG 45 0.158 SIDE CHAIN 7 A ARG 48 0.182 SIDE CHAIN 8 A ARG 7 0.309 SIDE CHAIN 8 A ARG 45 0.241 SIDE CHAIN 8 A ARG 48 0.296 SIDE CHAIN 9 A ARG 7 0.234 SIDE CHAIN 9 A ARG 45 0.228 SIDE CHAIN 9 A ARG 48 0.287 SIDE CHAIN 10 A ARG 7 0.156 SIDE CHAIN 10 A ARG 45 0.304 SIDE CHAIN 10 A ARG 48 0.315 SIDE CHAIN 11 A ARG 7 0.174 SIDE CHAIN 11 A ARG 45 0.196 SIDE CHAIN 11 A ARG 48 0.313 SIDE CHAIN 12 A ARG 7 0.182 SIDE CHAIN 12 A ARG 45 0.304 SIDE CHAIN 12 A ARG 48 0.315 SIDE CHAIN 13 A ARG 7 0.280 SIDE CHAIN 13 A ARG 45 0.317 SIDE CHAIN 13 A ARG 48 0.304 SIDE CHAIN 14 A ARG 7 0.239 SIDE CHAIN 14 A ARG 45 0.306 SIDE CHAIN 14 A ARG 48 0.316 SIDE CHAIN 15 A ARG 7 0.281 SIDE CHAIN 15 A ARG 45 0.281 SIDE CHAIN 15 A ARG 48 0.265 SIDE CHAIN 1 A ILE 5 54.91 169.56 1 A ASP 16 -147.69 -155.86 1 A GLU 19 -103.35 -168.62 1 A ILE 29 -106.62 -135.24 1 A ASN 30 -169.03 79.29 1 A ALA 33 -172.22 103.70 1 A ASP 35 59.99 155.53 1 A GLU 36 38.28 38.85 1 A VAL 43 -55.84 107.68 1 A THR 46 -140.05 -47.30 2 A ALA 2 53.27 -150.20 2 A ILE 29 -126.98 -143.12 2 A ASN 30 -157.15 76.82 2 A GLN 32 -133.45 -72.25 2 A ALA 33 59.86 116.18 2 A ASP 35 -177.81 -177.43 2 A TRP 38 59.67 140.07 2 A TYR 56 -95.27 -62.60 3 A ALA 2 -105.55 -82.42 3 A LYS 4 45.14 -170.45 3 A VAL 20 -120.11 -151.81 3 A ILE 29 -64.74 -156.53 3 A ILE 34 -59.80 -72.05 3 A ASP 35 -176.37 -63.74 3 A TRP 38 55.25 170.99 3 A THR 46 -92.11 -68.16 4 A LYS 4 -77.83 -169.43 4 A ILE 29 -73.71 -159.19 4 A VAL 31 -73.43 -80.96 4 A ILE 34 -73.16 -80.38 4 A ASP 35 -169.53 18.07 4 A TYR 56 -131.78 -40.15 5 A ILE 5 61.25 141.59 5 A GLU 19 -118.14 -165.46 5 A ALA 33 53.31 80.76 5 A ASP 35 65.42 -69.92 5 A TRP 38 52.56 179.04 5 A VAL 43 -61.98 97.45 5 A ARG 48 -70.54 -168.93 6 A LYS 4 -69.58 -171.59 6 A ASP 11 60.36 71.63 6 A ASP 16 -95.77 -151.03 6 A ILE 29 -58.88 -169.84 6 A VAL 31 -80.84 -158.42 6 A GLN 32 -160.49 -156.89 6 A ALA 33 -137.23 -152.46 6 A ILE 34 -128.45 -85.79 6 A ASP 35 -108.81 -64.20 6 A MET 39 -146.30 -152.13 6 A ARG 45 -75.85 -71.56 7 A ASP 16 -175.64 -35.02 7 A ALA 17 -176.64 -32.36 7 A ASP 24 -70.00 83.51 7 A ILE 29 -131.01 -145.59 7 A MET 39 -123.44 -163.12 8 A ILE 5 47.75 175.65 8 A ASP 11 -59.13 92.01 8 A ASP 16 -109.21 -82.04 8 A ALA 17 -170.36 -54.25 8 A VAL 20 -113.46 -156.75 8 A ILE 29 -112.93 -142.32 8 A THR 46 -131.77 -59.57 9 A ILE 5 57.59 160.91 9 A ARG 7 -170.03 138.12 9 A ASP 16 -154.33 -69.73 9 A ALA 17 -163.63 -34.11 9 A VAL 20 -110.36 -152.72 9 A ILE 29 -117.96 -140.03 9 A ASN 30 -172.19 69.83 9 A GLN 32 -144.53 -65.61 9 A ALA 33 61.58 133.91 9 A ASP 35 66.71 -66.54 9 A TRP 38 52.90 176.69 9 A ARG 45 -66.91 -70.31 10 A LYS 4 -78.17 -168.99 10 A ASP 11 58.68 90.59 10 A ALA 14 57.23 158.57 10 A ASP 16 -141.02 -155.66 10 A ASP 35 -171.73 -161.99 10 A TRP 38 55.07 169.97 10 A MET 39 -149.61 -147.96 11 A ILE 5 54.94 171.74 11 A ALA 14 55.15 166.87 11 A ASP 16 -149.86 -157.86 11 A VAL 20 -105.24 -162.62 11 A ASP 24 -69.83 81.73 11 A VAL 31 56.28 -86.64 11 A GLN 32 -171.09 139.93 11 A TYR 56 -88.29 -73.66 12 A ILE 34 -78.81 -70.12 12 A ASP 35 -178.85 -47.59 12 A GLU 36 -59.29 -82.47 12 A VAL 43 -57.14 109.83 12 A ARG 45 -75.83 -74.07 12 A TYR 56 -98.52 -60.95 13 A ALA 2 -175.30 72.42 13 A ILE 5 58.10 159.66 13 A ASP 16 -130.72 -154.85 13 A VAL 20 -113.70 -165.27 13 A ILE 29 -60.70 -160.23 13 A ASN 30 -160.79 79.10 13 A ASP 35 65.41 -72.19 13 A GLU 36 -88.11 47.05 13 A TRP 38 52.99 178.52 13 A VAL 57 -56.30 170.33 14 A LYS 4 -56.05 -168.77 14 A VAL 20 -115.79 -169.95 14 A ASP 24 -65.96 93.06 14 A ILE 29 -171.61 -35.58 14 A ASN 30 -46.66 -78.64 14 A VAL 31 -95.13 -109.21 14 A GLN 32 -176.26 -152.76 14 A ASP 35 61.75 146.08 14 A GLU 36 54.49 98.33 14 A TRP 38 54.80 171.30 14 A MET 39 -122.56 -167.84 14 A TYR 56 -98.94 -60.69 15 A ALA 2 -152.88 30.38 15 A ASP 24 -46.73 94.64 15 A ILE 29 -69.07 -152.77 15 A VAL 31 -100.98 -83.49 15 A ALA 33 -165.92 -166.59 15 A ILE 34 65.96 -60.63 15 A ASP 35 -56.09 171.49 15 A GLU 36 54.25 -168.80 15 A TYR 56 -106.20 -66.99 model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 SH3 DOMAIN FROM HUMAN NEBULIN, NMR, 15 STRUCTURES 1 Y N A ALA 54 A ALA 54 HELX_P ONE TURN A TYR 56 A TYR 56 5 H 3 TRANSFERASE TRANSFERASE, SH3 DOMAIN, NEBULIN, Z-DISK ASSEMBLY, ACTIN-BINDING NEBU_HUMAN UNP 1 1 P20929 VAYRKDAKENLHYTTVADRPDIKKATQAAKQASEVEYRAKHRKEGSHGLSMLGRPDIEMAKKAAKLSSQVKYRENFDKEK GKTPKYNPKDSQLYKVMKDANNLASEVKYKADLKKLHKPVTDMKESLIMNHVLNTSQLASSYQYKKKYEKSKGHYHTIPD NLEQLHLKEATELQSIVKYKEKYEKERGKPMLDFETPTYITAKESQQMQSGKEYRKDYEESIKGRNLTGLEVTPALLHVK YATKIASEKEYRKDLEESIRGKGLTEMEDTPDMLRAKNATQILNEKEYKRDLELEVKGRGLNAMANETPDFMRARNATDI ASQIKYKQSAEMEKANFTSVVDTPEIIHAQQVKNLSSQKKYKEDAEKSMSYYETVLDTPEIQRVRENQKNFSLLQYQCDL KNSKGKITVVQDTPEILRVKENQKNFSSVLYKEDVSPGTAIGKTPEMMRVKQTQDHISSVKYKEAIGQGTPIPDLPEVKR VKETQKHISSVMYKENLGTGIPTTVTPEIERVKRNQENFSSVLYKENLGKGIPTPITPEMERVKRNQENFSSVLYKENMG KGTPLPVTPEMERVKHNQENISSVLYKENMGKGTPLPVTPEMERVKHNQENISSVLYKENVGKATATPVTPEMQRVKRNQ ENISSVLYKENLGKATPTPFTPEMERVKRNQENFSSVLYKENMRKATPTPVTPEMERAKRNQENISSVLYSDSFRKQIQG KAAYVLDTPEMRRVRETQRHISTVKYHEDFEKHKGCFTPVVTDPITERVKKNMQDFSDINYRGIQRKVVEMEQKRNDQDQ ETITGLRVWRTNPGSVFDYDPAEDNIQSRSLHMINVQAQRRSREQSRSASALSISGGEEKSEHSEAPDHHLSTYSDGGVF AVSTAYKHAKTTELPQQRSSSVATQQTTVSSIPSHPSTAGKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTV QRTGRTGMLPANYVEAI 918 977 1ARK 1 60 P20929 A 1 1 60 1 1 1 1 1 1 2 A PHE 6 A PHE 6 A MET 9 A MET 9 A GLN 32 A GLN 32 A ILE 34 A ILE 34 A ALA 27 A ALA 27 A ILE 29 A ILE 29 A TRP 38 A TRP 38 A VAL 43 A VAL 43 A VAL 57 A VAL 57 A ILE 60 A ILE 60 A ARG 48 A ARG 48 A PRO 53 A PRO 53 A ASP 11 A ASP 11 A ALA 14 A ALA 14 A SER 21 A SER 21 A ASP 24 A ASP 24 1 P 1