0.015044
0.000000
0.000000
0.000000
0.015044
0.000000
0.000000
0.000000
0.012347
0.00000
0.00000
0.00000
CIS PROLINE - PRO 52
CIS PROLINE - PRO 73
Bujacz, G.
Jaskolski, M.
Alexandratos, J.
Wlodawer, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
66.470
66.470
80.990
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C8 H18 N2 O4 S
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
N
C
N
90
N
C
N
91
N
N
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
C
N
98
N
C
N
99
N
S
N
100
N
O
N
101
N
O
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
S
C
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
C
N
127
N
C
N
128
N
O
N
129
N
N
N
130
N
O
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
Y
175
N
C
Y
176
N
N
Y
177
N
C
Y
178
N
C
Y
179
N
N
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
S
C
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
N
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
N
N
264
S
C
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
C
N
269
N
S
N
270
N
C
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
N
311
N
C
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
O
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
R
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
N
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
N
392
N
O
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
N
N
406
S
C
N
407
N
C
N
408
N
O
N
409
N
C
N
410
N
C
N
411
N
C
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
doub
Y
175
N
doub
N
176
N
sing
Y
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
Y
281
N
doub
Y
282
N
sing
Y
283
N
sing
N
284
N
sing
Y
285
N
doub
N
286
N
sing
Y
287
N
doub
N
288
N
sing
Y
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
doub
Y
355
N
sing
Y
356
N
sing
N
357
N
sing
Y
358
N
sing
Y
359
N
doub
N
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
Y
378
N
doub
Y
379
N
sing
Y
380
N
sing
N
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
253
333
346
10.1006/jmbi.1995.0556
7563093
High-resolution structure of the catalytic domain of avian sarcoma virus integrase.
1995
10.2210/pdb1asu/pdb
pdb_00001asu
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
295
1
IMAGE PLATE
1994-11-19
MAR scanner 300 mm plate
M
x-ray
1
1.542
1.0
1.542
CRYSTALLIZED FROM 2% PEG 400, 2M AMMONIUM SULFATE, HEPES PH 7.5
17895.502
AVIAN SARCOMA VIRUS INTEGRASE
INS(PRO 48, LEU 49, ARG 50, GLU 51, ASN 208, LEU 209)
1
man
polymer
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
1
syn
non-polymer
18.015
water
181
nat
water
no
no
PLREPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFT
SKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKT
NL
PLREPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFT
SKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKT
NL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Alpharetrovirus
SCHMIDT-RUPPIN B
Escherichia
sample
11876
Avian sarcoma virus
562
Escherichia coli
PRC23IN(52-207)
2.50
50.77
7.5
pH 7.5
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1995-11-14
1
1
2008-03-03
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1995-08-25
REL
EPE
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HOH
water
ORIGINAL VIRAL DNA CLONE: JU ET AL., J. VIROL.
33:1026-1033 (1980)
ORIGINAL EXPRESSION CLONE: TERRY ET AL., J. VIROL.
62:2358-2365 (1988)
EXPRESSION CLONE FOR CORE: KULKOSKY ET AL., J. VIROL.
206:448-456 (1995)
EPE
252
2
EPE
EPE
252
A
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
325
3
HOH
HOH
325
A
HOH
326
3
HOH
HOH
326
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
329
3
HOH
HOH
329
A
HOH
330
3
HOH
HOH
330
A
HOH
331
3
HOH
HOH
331
A
HOH
332
3
HOH
HOH
332
A
HOH
333
3
HOH
HOH
333
A
HOH
334
3
HOH
HOH
334
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
337
3
HOH
HOH
337
A
HOH
338
3
HOH
HOH
338
A
HOH
339
3
HOH
HOH
339
A
HOH
340
3
HOH
HOH
340
A
HOH
341
3
HOH
HOH
341
A
HOH
342
3
HOH
HOH
342
A
HOH
343
3
HOH
HOH
343
A
HOH
344
3
HOH
HOH
344
A
HOH
345
3
HOH
HOH
345
A
HOH
346
3
HOH
HOH
346
A
HOH
347
3
HOH
HOH
347
A
HOH
348
3
HOH
HOH
348
A
HOH
349
3
HOH
HOH
349
A
HOH
350
3
HOH
HOH
350
A
HOH
351
3
HOH
HOH
351
A
HOH
352
3
HOH
HOH
352
A
HOH
353
3
HOH
HOH
353
A
HOH
354
3
HOH
HOH
354
A
HOH
355
3
HOH
HOH
355
A
HOH
356
3
HOH
HOH
356
A
HOH
357
3
HOH
HOH
357
A
HOH
358
3
HOH
HOH
358
A
HOH
359
3
HOH
HOH
359
A
HOH
360
3
HOH
HOH
360
A
HOH
361
3
HOH
HOH
361
A
HOH
362
3
HOH
HOH
362
A
HOH
363
3
HOH
HOH
363
A
HOH
364
3
HOH
HOH
364
A
HOH
365
3
HOH
HOH
365
A
HOH
366
3
HOH
HOH
366
A
HOH
367
3
HOH
HOH
367
A
HOH
368
3
HOH
HOH
368
A
HOH
369
3
HOH
HOH
369
A
HOH
370
3
HOH
HOH
370
A
HOH
371
3
HOH
HOH
371
A
HOH
372
3
HOH
HOH
372
A
HOH
373
3
HOH
HOH
373
A
HOH
374
3
HOH
HOH
374
A
HOH
375
3
HOH
HOH
375
A
HOH
376
3
HOH
HOH
376
A
HOH
377
3
HOH
HOH
377
A
HOH
378
3
HOH
HOH
378
A
HOH
379
3
HOH
HOH
379
A
HOH
380
3
HOH
HOH
380
A
HOH
381
3
HOH
HOH
381
A
HOH
382
3
HOH
HOH
382
A
HOH
383
3
HOH
HOH
383
A
HOH
384
3
HOH
HOH
384
A
HOH
385
3
HOH
HOH
385
A
HOH
386
3
HOH
HOH
386
A
HOH
387
3
HOH
HOH
387
A
HOH
388
3
HOH
HOH
388
A
HOH
389
3
HOH
HOH
389
A
HOH
390
3
HOH
HOH
390
A
HOH
391
3
HOH
HOH
391
A
HOH
392
3
HOH
HOH
392
A
HOH
393
3
HOH
HOH
393
A
HOH
394
3
HOH
HOH
394
A
HOH
395
3
HOH
HOH
395
A
HOH
396
3
HOH
HOH
396
A
HOH
397
3
HOH
HOH
397
A
HOH
398
3
HOH
HOH
398
A
HOH
399
3
HOH
HOH
399
A
HOH
400
3
HOH
HOH
400
A
HOH
401
3
HOH
HOH
401
A
HOH
402
3
HOH
HOH
402
A
HOH
403
3
HOH
HOH
403
A
HOH
404
3
HOH
HOH
404
A
HOH
405
3
HOH
HOH
405
A
HOH
406
3
HOH
HOH
406
A
HOH
407
3
HOH
HOH
407
A
HOH
408
3
HOH
HOH
408
A
HOH
409
3
HOH
HOH
409
A
HOH
410
3
HOH
HOH
410
A
HOH
411
3
HOH
HOH
411
A
HOH
412
3
HOH
HOH
412
A
HOH
413
3
HOH
HOH
413
A
HOH
414
3
HOH
HOH
414
A
HOH
415
3
HOH
HOH
415
A
HOH
416
3
HOH
HOH
416
A
HOH
417
3
HOH
HOH
417
A
HOH
418
3
HOH
HOH
418
A
HOH
419
3
HOH
HOH
419
A
HOH
420
3
HOH
HOH
420
A
HOH
421
3
HOH
HOH
421
A
HOH
422
3
HOH
HOH
422
A
HOH
423
3
HOH
HOH
423
A
HOH
424
3
HOH
HOH
424
A
HOH
425
3
HOH
HOH
425
A
HOH
426
3
HOH
HOH
426
A
HOH
427
3
HOH
HOH
427
A
HOH
428
3
HOH
HOH
428
A
HOH
429
3
HOH
HOH
429
A
HOH
430
3
HOH
HOH
430
A
HOH
431
3
HOH
HOH
431
A
HOH
432
3
HOH
HOH
432
A
HOH
433
3
HOH
HOH
433
A
HOH
434
3
HOH
HOH
434
A
HOH
435
3
HOH
HOH
435
A
HOH
436
3
HOH
HOH
436
A
HOH
437
3
HOH
HOH
437
A
HOH
438
3
HOH
HOH
438
A
HOH
439
3
HOH
HOH
439
A
HOH
440
3
HOH
HOH
440
A
HOH
441
3
HOH
HOH
441
A
HOH
442
3
HOH
HOH
442
A
HOH
443
3
HOH
HOH
443
A
HOH
444
3
HOH
HOH
444
A
HOH
445
3
HOH
HOH
445
A
HOH
446
3
HOH
HOH
446
A
HOH
447
3
HOH
HOH
447
A
HOH
448
3
HOH
HOH
448
A
HOH
449
3
HOH
HOH
449
A
HOH
450
3
HOH
HOH
450
A
HOH
451
3
HOH
HOH
451
A
HOH
452
3
HOH
HOH
452
A
HOH
453
3
HOH
HOH
453
A
HOH
454
3
HOH
HOH
454
A
HOH
455
3
HOH
HOH
455
A
HOH
456
3
HOH
HOH
456
A
HOH
457
3
HOH
HOH
457
A
HOH
458
3
HOH
HOH
458
A
HOH
459
3
HOH
HOH
459
A
HOH
460
3
HOH
HOH
460
A
HOH
461
3
HOH
HOH
461
A
HOH
462
3
HOH
HOH
462
A
HOH
463
3
HOH
HOH
463
A
HOH
464
3
HOH
HOH
464
A
HOH
465
3
HOH
HOH
465
A
HOH
466
3
HOH
HOH
466
A
HOH
467
3
HOH
HOH
467
A
HOH
468
3
HOH
HOH
468
A
HOH
469
3
HOH
HOH
469
A
HOH
470
3
HOH
HOH
470
A
HOH
471
3
HOH
HOH
471
A
HOH
472
3
HOH
HOH
472
A
HOH
473
3
HOH
HOH
473
A
HOH
474
3
HOH
HOH
474
A
HOH
475
3
HOH
HOH
475
A
HOH
476
3
HOH
HOH
476
A
HOH
477
3
HOH
HOH
477
A
HOH
478
3
HOH
HOH
478
A
HOH
479
3
HOH
HOH
479
A
HOH
480
3
HOH
HOH
480
A
HOH
481
3
HOH
HOH
481
A
PRO
48
n
1
PRO
48
A
LEU
49
n
2
LEU
49
A
ARG
50
n
3
ARG
50
A
GLU
51
n
4
GLU
51
A
PRO
52
n
5
PRO
52
A
ARG
53
n
6
ARG
53
A
GLY
54
n
7
GLY
54
A
LEU
55
n
8
LEU
55
A
GLY
56
n
9
GLY
56
A
PRO
57
n
10
PRO
57
A
LEU
58
n
11
LEU
58
A
GLN
59
n
12
GLN
59
A
ILE
60
n
13
ILE
60
A
TRP
61
n
14
TRP
61
A
GLN
62
n
15
GLN
62
A
THR
63
n
16
THR
63
A
ASP
64
n
17
ASP
64
A
PHE
65
n
18
PHE
65
A
THR
66
n
19
THR
66
A
LEU
67
n
20
LEU
67
A
GLU
68
n
21
GLU
68
A
PRO
69
n
22
PRO
69
A
ARG
70
n
23
ARG
70
A
MET
71
n
24
MET
71
A
ALA
72
n
25
ALA
72
A
PRO
73
n
26
PRO
73
A
ARG
74
n
27
ARG
74
A
SER
75
n
28
SER
75
A
TRP
76
n
29
TRP
76
A
LEU
77
n
30
LEU
77
A
ALA
78
n
31
ALA
78
A
VAL
79
n
32
VAL
79
A
THR
80
n
33
THR
80
A
VAL
81
n
34
VAL
81
A
ASP
82
n
35
ASP
82
A
THR
83
n
36
THR
83
A
ALA
84
n
37
ALA
84
A
SER
85
n
38
SER
85
A
SER
86
n
39
SER
86
A
ALA
87
n
40
ALA
87
A
ILE
88
n
41
ILE
88
A
VAL
89
n
42
VAL
89
A
VAL
90
n
43
VAL
90
A
THR
91
n
44
THR
91
A
GLN
92
n
45
GLN
92
A
HIS
93
n
46
HIS
93
A
GLY
94
n
47
GLY
94
A
ARG
95
n
48
ARG
95
A
VAL
96
n
49
VAL
96
A
THR
97
n
50
THR
97
A
SER
98
n
51
SER
98
A
VAL
99
n
52
VAL
99
A
ALA
100
n
53
ALA
100
A
ALA
101
n
54
ALA
101
A
GLN
102
n
55
GLN
102
A
HIS
103
n
56
HIS
103
A
HIS
104
n
57
HIS
104
A
TRP
105
n
58
TRP
105
A
ALA
106
n
59
ALA
106
A
THR
107
n
60
THR
107
A
ALA
108
n
61
ALA
108
A
ILE
109
n
62
ILE
109
A
ALA
110
n
63
ALA
110
A
VAL
111
n
64
VAL
111
A
LEU
112
n
65
LEU
112
A
GLY
113
n
66
GLY
113
A
ARG
114
n
67
ARG
114
A
PRO
115
n
68
PRO
115
A
LYS
116
n
69
LYS
116
A
ALA
117
n
70
ALA
117
A
ILE
118
n
71
ILE
118
A
LYS
119
n
72
LYS
119
A
THR
120
n
73
THR
120
A
ASP
121
n
74
ASP
121
A
ASN
122
n
75
ASN
122
A
GLY
123
n
76
GLY
123
A
SER
124
n
77
SER
124
A
CYS
125
n
78
CYS
125
A
PHE
126
n
79
PHE
126
A
THR
127
n
80
THR
127
A
SER
128
n
81
SER
128
A
LYS
129
n
82
LYS
129
A
SER
130
n
83
SER
130
A
THR
131
n
84
THR
131
A
ARG
132
n
85
ARG
132
A
GLU
133
n
86
GLU
133
A
TRP
134
n
87
TRP
134
A
LEU
135
n
88
LEU
135
A
ALA
136
n
89
ALA
136
A
ARG
137
n
90
ARG
137
A
TRP
138
n
91
TRP
138
A
GLY
139
n
92
GLY
139
A
ILE
140
n
93
ILE
140
A
ALA
141
n
94
ALA
141
A
HIS
142
n
95
HIS
142
A
THR
143
n
96
THR
143
A
THR
144
n
97
THR
144
A
GLY
145
n
98
GLY
145
A
ILE
146
n
99
ILE
146
A
PRO
147
n
100
PRO
147
A
GLY
148
n
101
GLY
148
A
ASN
149
n
102
ASN
149
A
SER
150
n
103
SER
150
A
GLN
151
n
104
GLN
151
A
GLY
152
n
105
GLY
152
A
GLN
153
n
106
GLN
153
A
ALA
154
n
107
ALA
154
A
MET
155
n
108
MET
155
A
VAL
156
n
109
VAL
156
A
GLU
157
n
110
GLU
157
A
ARG
158
n
111
ARG
158
A
ALA
159
n
112
ALA
159
A
ASN
160
n
113
ASN
160
A
ARG
161
n
114
ARG
161
A
LEU
162
n
115
LEU
162
A
LEU
163
n
116
LEU
163
A
LYS
164
n
117
LYS
164
A
ASP
165
n
118
ASP
165
A
LYS
166
n
119
LYS
166
A
ILE
167
n
120
ILE
167
A
ARG
168
n
121
ARG
168
A
VAL
169
n
122
VAL
169
A
LEU
170
n
123
LEU
170
A
ALA
171
n
124
ALA
171
A
GLU
172
n
125
GLU
172
A
GLY
173
n
126
GLY
173
A
ASP
174
n
127
ASP
174
A
GLY
175
n
128
GLY
175
A
PHE
176
n
129
PHE
176
A
MET
177
n
130
MET
177
A
LYS
178
n
131
LYS
178
A
ARG
179
n
132
ARG
179
A
ILE
180
n
133
ILE
180
A
PRO
181
n
134
PRO
181
A
THR
182
n
135
THR
182
A
SER
183
n
136
SER
183
A
LYS
184
n
137
LYS
184
A
GLN
185
n
138
GLN
185
A
GLY
186
n
139
GLY
186
A
GLU
187
n
140
GLU
187
A
LEU
188
n
141
LEU
188
A
LEU
189
n
142
LEU
189
A
ALA
190
n
143
ALA
190
A
LYS
191
n
144
LYS
191
A
ALA
192
n
145
ALA
192
A
MET
193
n
146
MET
193
A
TYR
194
n
147
TYR
194
A
ALA
195
n
148
ALA
195
A
LEU
196
n
149
LEU
196
A
ASN
197
n
150
ASN
197
A
HIS
198
n
151
HIS
198
A
PHE
199
n
152
PHE
199
A
GLU
200
n
153
GLU
200
A
ARG
201
n
154
ARG
201
A
GLY
202
n
155
GLY
202
A
GLU
203
n
156
GLU
203
A
ASN
204
n
157
ASN
204
A
THR
205
n
158
THR
205
A
LYS
206
n
159
LYS
206
A
THR
207
n
160
THR
207
A
ASN
208
n
161
ASN
208
A
LEU
209
n
162
LEU
209
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
3230
-5
17510
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_666
-y+1,-x+1,-z+3/2
crystal symmetry operation
66.4700000000
66.4700000000
121.4850000000
1
A
A
O
O
GLU
HOH
200
453
2.02
1
A
A
O
O
HOH
HOH
336
450
2.07
1
A
A
O
O
HOH
HOH
320
432
2.09
1
A
A
NH1
O
ARG
HOH
70
427
2.17
1
A
A
O
O
HOH
HOH
445
449
2.18
1
-6.92
0.90
118.30
111.38
A
A
A
CB
CG
OD2
ASP
ASP
ASP
64
64
64
N
1
-4.11
0.50
120.30
116.19
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
70
70
70
N
1
-10.65
1.40
123.60
112.95
A
A
A
CD
NE
CZ
ARG
ARG
ARG
74
74
74
N
1
-3.71
0.50
120.30
116.59
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
74
74
74
N
1
5.80
0.90
118.30
124.10
A
A
A
CB
CG
OD1
ASP
ASP
ASP
82
82
82
N
1
3.28
0.50
120.30
123.58
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
114
114
114
N
1
4.14
0.50
120.30
124.44
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
132
132
132
N
1
3.35
0.50
120.30
123.65
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
158
158
158
N
1
11.97
1.40
123.60
135.57
A
A
A
CD
NE
CZ
ARG
ARG
ARG
168
168
168
N
1
5.38
0.50
120.30
125.68
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
179
179
179
N
1
-7.61
0.50
120.30
112.69
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
179
179
179
N
1
A
ARG
53
62.00
82.07
1
A
PRO
147
-73.29
39.24
1
A
LYS
178
-122.95
-123.91
1
A
PHE
199
-51.31
1.50
1
A
GLU
200
-10.63
101.62
1
A
GLU
203
-28.71
-20.78
1
A
ASN
204
-169.95
70.25
1
A
THR
207
-27.35
137.00
32.923
0.188
0.152
1.70
8.0
15966
88.7
1
2.0
1.70
8.0
181
1454
15
0
1258
0.009
0.017
0.035
0.041
0.040
0.057
1.802
2.400
2.974
3.300
3.867
3.700
6.058
6.400
0.011
0.022
0.133
0.180
0.198
0.500
0.277
0.500
0.282
0.500
2.1
3.4
18.7
13.0
40.1
10.0
1.7
25.0
1ASU
18249
0.0
0.092
1
2.99
88.5
refinement
PROLSQ
data reduction
DENZO
data scaling
SCALEPACK
AVIAN SARCOMA VIRUS INTEGRASE CATALYTIC CORE DOMAIN CRYSTALLIZED FROM 2% PEG 400, 2M AMMONIUM SULFATE, HEPES PH 7.5
1
N
N
2
N
N
3
N
N
A
SER
98
A
SER
51
HELX_P
A
LEU
112
A
LEU
65
1
2
15
A
SER
124
A
SER
77
HELX_P
A
THR
127
A
THR
80
1
3
4
A
LYS
129
A
LYS
82
HELX_P
A
TRP
138
A
TRP
91
1
4
10
A
ALA
154
A
ALA
107
HELX_P
A
ASP
174
A
ASP
127
1
5
21
A
THR
182
A
THR
135
HELX_P
A
LEU
196
A
LEU
149
1
6
15
DNA INTEGRATION
DNA INTEGRATION
A
GLU
51
A
GLU
4
1
A
PRO
52
A
PRO
5
1.45
A
ALA
72
A
ALA
25
1
A
PRO
73
A
PRO
26
1.65
POL_RSVP
UNP
1
1
P03354
TVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAK
LVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLV
VGQVLEPLRLKHPSLCMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKVQREPGVQYLGYKLGSTYVAPVGL
VAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPFYEQLRGSDPNEAREWNLDMKMAWREIVRLSTTAALERWDPALPL
EGAVARCEQGAIGVLGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPACFREDLPLP
EGILLALKGFAGKIRSSDTPSIFDIARPLHVSLKVRVTDHPVPGPTVFTDASSSTHKGVVVWREGPRWEIKEIADLGASV
QQLEARAVAMALLLWPTTPTNVVTDSAFVAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPGFFTEGN
DVADSQATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIWQTDFTLE
PRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPG
NSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRI
ETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKDEVTKKDEASPLFAGISDWIPWEDEQEGLQGETASN
KQERPGEDTLAANES
624
779
1ASU
52
207
P03354
A
1
5
160
1
VAL
conflict
ALA
101
1ASU
A
P03354
UNP
673
54
1
ARG
conflict
LYS
166
1ASU
A
P03354
UNP
738
119
5
anti-parallel
anti-parallel
parallel
parallel
A
ALA
87
A
ALA
40
A
HIS
93
A
HIS
46
A
TRP
76
A
TRP
29
A
THR
83
A
THR
36
A
ILE
60
A
ILE
13
A
PRO
69
A
PRO
22
A
ALA
117
A
ALA
70
A
THR
120
A
THR
73
A
ILE
140
A
ILE
93
A
THR
143
A
THR
96
ACTIVE SITE
Author
3
BINDING SITE FOR RESIDUE EPE A 252
A
EPE
252
Software
15
A
ASP
64
A
ASP
17
3
1_555
A
ASP
121
A
ASP
74
3
1_555
A
GLU
157
A
GLU
110
3
1_555
A
PRO
73
A
PRO
26
15
1_555
A
SER
75
A
SER
28
15
1_555
A
TRP
76
A
TRP
29
15
1_555
A
ARG
95
A
ARG
48
15
1_555
A
VAL
96
A
VAL
49
15
1_555
A
ARG
137
A
ARG
90
15
6_566
A
TRP
138
A
TRP
91
15
6_566
A
LYS
166
A
LYS
119
15
4_565
A
LYS
191
A
LYS
144
15
4_565
A
ALA
195
A
ALA
148
15
4_565
A
ARG
201
A
ARG
154
15
4_565
A
HOH
307
C
HOH
15
1_555
A
HOH
318
C
HOH
15
1_555
A
HOH
323
C
HOH
15
6_566
A
HOH
395
C
HOH
15
1_555
96
P 43 21 2