0.015026 0.000000 0.000000 0.000000 0.015026 0.000000 0.000000 0.000000 0.012366 0.00000 0.00000 0.00000 CIS PROLINE - PRO 73 Bujacz, G. Jaskolski, M. Alexandratos, J. Wlodawer, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 66.550 66.550 80.870 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O3 S 165.211 n HYDROXYETHYLCYSTEINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 253 333 346 10.1006/jmbi.1995.0556 7563093 High-resolution structure of the catalytic domain of avian sarcoma virus integrase. 1995 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 295 1 IMAGE PLATE 1994-10-08 MARRESEARCH M x-ray 1 1.542 1.0 1.542 CRYSTALLIZED FROM 20% PEG 4000, SODIUM CITRATE PH 5.6 17939.555 AVIAN SARCOMA VIRUS INTEGRASE INS(PRO 48, LEU 49, ARG 50, GLU 51, ASN 208, LEU 209) 1 man polymer 18.015 water 117 nat water no yes PLREPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGS (OCY)FTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFE RGENTKTNL PLREPRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFT SKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKT NL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Alpharetrovirus SCHMIDT-RUPPIN B Escherichia sample 11876 Avian sarcoma virus 562 Escherichia coli PRC23IN(52-207) 2.50 50.81 5.6 pH 5.6 repository Initial release Version format compliance Version format compliance 1 0 1995-11-14 1 1 2008-03-03 1 2 2011-07-13 Y 1995-08-25 REL HOH water ORIGINAL VIRAL DNA CLONE: JU ET AL., J. VIROL. 33:1026-1033 (1980) ORIGINAL EXPRESSION CLONE: TERRY ET AL., J. VIROL. 62:2358-2365 (1988) EXPRESSION CLONE FOR CORE: KULKOSKY ET AL., J. VIROL. 206:448-456 (1995) HOH 301 2 HOH HOH 301 A HOH 302 2 HOH HOH 302 A HOH 303 2 HOH HOH 303 A HOH 304 2 HOH HOH 304 A HOH 305 2 HOH HOH 305 A HOH 306 2 HOH HOH 306 A HOH 307 2 HOH HOH 307 A HOH 308 2 HOH HOH 308 A HOH 309 2 HOH HOH 309 A HOH 310 2 HOH HOH 310 A HOH 311 2 HOH HOH 311 A HOH 312 2 HOH HOH 312 A HOH 313 2 HOH HOH 313 A HOH 314 2 HOH HOH 314 A HOH 315 2 HOH HOH 315 A HOH 316 2 HOH HOH 316 A HOH 317 2 HOH HOH 317 A HOH 320 2 HOH HOH 320 A HOH 321 2 HOH HOH 321 A HOH 322 2 HOH HOH 322 A HOH 323 2 HOH HOH 323 A HOH 324 2 HOH HOH 324 A HOH 325 2 HOH HOH 325 A HOH 326 2 HOH HOH 326 A HOH 327 2 HOH HOH 327 A HOH 328 2 HOH HOH 328 A HOH 329 2 HOH HOH 329 A HOH 330 2 HOH HOH 330 A HOH 331 2 HOH HOH 331 A HOH 332 2 HOH HOH 332 A HOH 335 2 HOH HOH 335 A HOH 336 2 HOH HOH 336 A HOH 337 2 HOH HOH 337 A HOH 338 2 HOH HOH 338 A HOH 339 2 HOH HOH 339 A HOH 340 2 HOH HOH 340 A HOH 341 2 HOH HOH 341 A HOH 343 2 HOH HOH 343 A HOH 345 2 HOH HOH 345 A HOH 346 2 HOH HOH 346 A HOH 347 2 HOH HOH 347 A HOH 348 2 HOH HOH 348 A HOH 349 2 HOH HOH 349 A HOH 350 2 HOH HOH 350 A HOH 351 2 HOH HOH 351 A HOH 352 2 HOH HOH 352 A HOH 354 2 HOH HOH 354 A HOH 357 2 HOH HOH 357 A HOH 359 2 HOH HOH 359 A HOH 362 2 HOH HOH 362 A HOH 363 2 HOH HOH 363 A HOH 364 2 HOH HOH 364 A HOH 367 2 HOH HOH 367 A HOH 368 2 HOH HOH 368 A HOH 373 2 HOH HOH 373 A HOH 377 2 HOH HOH 377 A HOH 379 2 HOH HOH 379 A HOH 384 2 HOH HOH 384 A HOH 389 2 HOH HOH 389 A HOH 390 2 HOH HOH 390 A HOH 392 2 HOH HOH 392 A HOH 394 2 HOH HOH 394 A HOH 395 2 HOH HOH 395 A HOH 398 2 HOH HOH 398 A HOH 403 2 HOH HOH 403 A HOH 404 2 HOH HOH 404 A HOH 405 2 HOH HOH 405 A HOH 414 2 HOH HOH 414 A HOH 416 2 HOH HOH 416 A HOH 424 2 HOH HOH 424 A HOH 432 2 HOH HOH 432 A HOH 439 2 HOH HOH 439 A HOH 457 2 HOH HOH 457 A HOH 462 2 HOH HOH 462 A HOH 464 2 HOH HOH 464 A HOH 469 2 HOH HOH 469 A HOH 471 2 HOH HOH 471 A HOH 501 2 HOH HOH 501 A HOH 502 2 HOH HOH 502 A HOH 503 2 HOH HOH 503 A HOH 506 2 HOH HOH 506 A HOH 507 2 HOH HOH 507 A HOH 508 2 HOH HOH 508 A HOH 509 2 HOH HOH 509 A HOH 510 2 HOH HOH 510 A HOH 511 2 HOH HOH 511 A HOH 512 2 HOH HOH 512 A HOH 513 2 HOH HOH 513 A HOH 514 2 HOH HOH 514 A HOH 520 2 HOH HOH 520 A HOH 523 2 HOH HOH 523 A HOH 525 2 HOH HOH 525 A HOH 530 2 HOH HOH 530 A HOH 531 2 HOH HOH 531 A HOH 532 2 HOH HOH 532 A HOH 533 2 HOH HOH 533 A HOH 534 2 HOH HOH 534 A HOH 535 2 HOH HOH 535 A HOH 536 2 HOH HOH 536 A HOH 537 2 HOH HOH 537 A HOH 538 2 HOH HOH 538 A HOH 630 2 HOH HOH 630 A HOH 635 2 HOH HOH 635 A HOH 655 2 HOH HOH 655 A HOH 658 2 HOH HOH 658 A HOH 662 2 HOH HOH 662 A HOH 671 2 HOH HOH 671 A HOH 672 2 HOH HOH 672 A HOH 673 2 HOH HOH 673 A HOH 674 2 HOH HOH 674 A HOH 675 2 HOH HOH 675 A HOH 676 2 HOH HOH 676 A HOH 677 2 HOH HOH 677 A HOH 678 2 HOH HOH 678 A HOH 679 2 HOH HOH 679 A HOH 680 2 HOH HOH 680 A HOH 681 2 HOH HOH 681 A n 1 48 A n 2 49 A n 3 50 A n 4 51 A n 5 52 A n 6 53 A GLY 54 n 7 GLY 54 A LEU 55 n 8 LEU 55 A GLY 56 n 9 GLY 56 A PRO 57 n 10 PRO 57 A LEU 58 n 11 LEU 58 A GLN 59 n 12 GLN 59 A ILE 60 n 13 ILE 60 A TRP 61 n 14 TRP 61 A GLN 62 n 15 GLN 62 A THR 63 n 16 THR 63 A ASP 64 n 17 ASP 64 A PHE 65 n 18 PHE 65 A THR 66 n 19 THR 66 A LEU 67 n 20 LEU 67 A GLU 68 n 21 GLU 68 A PRO 69 n 22 PRO 69 A ARG 70 n 23 ARG 70 A MET 71 n 24 MET 71 A ALA 72 n 25 ALA 72 A PRO 73 n 26 PRO 73 A ARG 74 n 27 ARG 74 A SER 75 n 28 SER 75 A TRP 76 n 29 TRP 76 A LEU 77 n 30 LEU 77 A ALA 78 n 31 ALA 78 A VAL 79 n 32 VAL 79 A THR 80 n 33 THR 80 A VAL 81 n 34 VAL 81 A ASP 82 n 35 ASP 82 A THR 83 n 36 THR 83 A ALA 84 n 37 ALA 84 A SER 85 n 38 SER 85 A SER 86 n 39 SER 86 A ALA 87 n 40 ALA 87 A ILE 88 n 41 ILE 88 A VAL 89 n 42 VAL 89 A VAL 90 n 43 VAL 90 A THR 91 n 44 THR 91 A GLN 92 n 45 GLN 92 A HIS 93 n 46 HIS 93 A GLY 94 n 47 GLY 94 A ARG 95 n 48 ARG 95 A VAL 96 n 49 VAL 96 A THR 97 n 50 THR 97 A SER 98 n 51 SER 98 A VAL 99 n 52 VAL 99 A ALA 100 n 53 ALA 100 A ALA 101 n 54 ALA 101 A GLN 102 n 55 GLN 102 A HIS 103 n 56 HIS 103 A HIS 104 n 57 HIS 104 A TRP 105 n 58 TRP 105 A ALA 106 n 59 ALA 106 A THR 107 n 60 THR 107 A ALA 108 n 61 ALA 108 A ILE 109 n 62 ILE 109 A ALA 110 n 63 ALA 110 A VAL 111 n 64 VAL 111 A LEU 112 n 65 LEU 112 A GLY 113 n 66 GLY 113 A ARG 114 n 67 ARG 114 A PRO 115 n 68 PRO 115 A LYS 116 n 69 LYS 116 A ALA 117 n 70 ALA 117 A ILE 118 n 71 ILE 118 A LYS 119 n 72 LYS 119 A THR 120 n 73 THR 120 A ASP 121 n 74 ASP 121 A ASN 122 n 75 ASN 122 A GLY 123 n 76 GLY 123 A SER 124 n 77 SER 124 A OCY 125 n 78 OCY 125 A PHE 126 n 79 PHE 126 A THR 127 n 80 THR 127 A SER 128 n 81 SER 128 A LYS 129 n 82 LYS 129 A SER 130 n 83 SER 130 A THR 131 n 84 THR 131 A ARG 132 n 85 ARG 132 A GLU 133 n 86 GLU 133 A TRP 134 n 87 TRP 134 A LEU 135 n 88 LEU 135 A ALA 136 n 89 ALA 136 A ARG 137 n 90 ARG 137 A TRP 138 n 91 TRP 138 A GLY 139 n 92 GLY 139 A ILE 140 n 93 ILE 140 A ALA 141 n 94 ALA 141 A HIS 142 n 95 HIS 142 A THR 143 n 96 THR 143 A THR 144 n 97 THR 144 A GLY 145 n 98 GLY 145 A ILE 146 n 99 ILE 146 A PRO 147 n 100 PRO 147 A GLY 148 n 101 GLY 148 A ASN 149 n 102 ASN 149 A SER 150 n 103 SER 150 A GLN 151 n 104 GLN 151 A GLY 152 n 105 GLY 152 A GLN 153 n 106 GLN 153 A ALA 154 n 107 ALA 154 A MET 155 n 108 MET 155 A VAL 156 n 109 VAL 156 A GLU 157 n 110 GLU 157 A ARG 158 n 111 ARG 158 A ALA 159 n 112 ALA 159 A ASN 160 n 113 ASN 160 A ARG 161 n 114 ARG 161 A LEU 162 n 115 LEU 162 A LEU 163 n 116 LEU 163 A LYS 164 n 117 LYS 164 A ASP 165 n 118 ASP 165 A LYS 166 n 119 LYS 166 A ILE 167 n 120 ILE 167 A ARG 168 n 121 ARG 168 A VAL 169 n 122 VAL 169 A LEU 170 n 123 LEU 170 A ALA 171 n 124 ALA 171 A GLU 172 n 125 GLU 172 A GLY 173 n 126 GLY 173 A ASP 174 n 127 ASP 174 A GLY 175 n 128 GLY 175 A PHE 176 n 129 PHE 176 A MET 177 n 130 MET 177 A LYS 178 n 131 LYS 178 A ARG 179 n 132 ARG 179 A ILE 180 n 133 ILE 180 A PRO 181 n 134 PRO 181 A THR 182 n 135 THR 182 A SER 183 n 136 SER 183 A LYS 184 n 137 LYS 184 A GLN 185 n 138 GLN 185 A GLY 186 n 139 GLY 186 A GLU 187 n 140 GLU 187 A LEU 188 n 141 LEU 188 A LEU 189 n 142 LEU 189 A ALA 190 n 143 ALA 190 A LYS 191 n 144 LYS 191 A ALA 192 n 145 ALA 192 A MET 193 n 146 MET 193 A TYR 194 n 147 TYR 194 A ALA 195 n 148 ALA 195 A LEU 196 n 149 LEU 196 A ASN 197 n 150 ASN 197 A HIS 198 n 151 HIS 198 A PHE 199 n 152 PHE 199 A n 153 200 A n 154 201 A n 155 202 A n 156 203 A n 157 204 A n 158 205 A n 159 206 A n 160 207 A n 161 208 A n 162 209 A author_and_software_defined_assembly PISA 2 dimeric 1900 -2.8 14610 A OCY 125 HYDROXYETHYLCYSTEINE A OCY 78 CYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_556 y,x,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 80.8700000000 1 A CG GLN 151 A CG GLN 104 1 Y 1 A CD GLN 151 A CD GLN 104 1 Y 1 A OE1 GLN 151 A OE1 GLN 104 1 Y 1 A NE2 GLN 151 A NE2 GLN 104 1 Y 1 A PRO 48 A PRO 1 1 Y 1 A LEU 49 A LEU 2 1 Y 1 A ARG 50 A ARG 3 1 Y 1 A GLU 51 A GLU 4 1 Y 1 A PRO 52 A PRO 5 1 Y 1 A ARG 53 A ARG 6 1 Y 1 A GLU 200 A GLU 153 1 Y 1 A ARG 201 A ARG 154 1 Y 1 A GLY 202 A GLY 155 1 Y 1 A GLU 203 A GLU 156 1 Y 1 A ASN 204 A ASN 157 1 Y 1 A THR 205 A THR 158 1 Y 1 A LYS 206 A LYS 159 1 Y 1 A THR 207 A THR 160 1 Y 1 A ASN 208 A ASN 161 1 Y 1 A LEU 209 A LEU 162 1 Y 1 -7.43 0.90 118.30 110.87 A A A CB CG OD2 ASP ASP ASP 64 64 64 N 1 -8.92 1.40 123.60 114.68 A A A CD NE CZ ARG ARG ARG 74 74 74 N 1 12.25 1.10 119.40 131.65 A A A NH1 CZ NH2 ARG ARG ARG 74 74 74 N 1 -6.19 0.50 120.30 114.11 A A A NE CZ NH1 ARG ARG ARG 74 74 74 N 1 -6.09 0.50 120.30 114.21 A A A NE CZ NH2 ARG ARG ARG 74 74 74 N 1 -11.51 1.90 110.10 98.59 A A A CB CA C SER SER SER 85 85 85 N 1 16.93 1.40 123.60 140.53 A A A CD NE CZ ARG ARG ARG 95 95 95 N 1 -3.13 0.50 120.30 117.17 A A A NE CZ NH1 ARG ARG ARG 95 95 95 N 1 -8.83 1.40 123.60 114.77 A A A CD NE CZ ARG ARG ARG 114 114 114 N 1 -5.73 0.50 120.30 114.57 A A A NE CZ NH2 ARG ARG ARG 114 114 114 N 1 7.37 0.90 118.30 125.67 A A A CB CG OD1 ASP ASP ASP 121 121 121 N 1 -9.64 0.90 118.30 108.66 A A A CB CG OD2 ASP ASP ASP 121 121 121 N 1 18.36 2.70 114.20 132.56 A A A CB CG CD GLU GLU GLU 133 133 133 N 1 3.13 0.50 120.30 123.43 A A A NE CZ NH1 ARG ARG ARG 158 158 158 N 1 15.93 1.40 123.60 139.53 A A A CD NE CZ ARG ARG ARG 161 161 161 N 1 3.52 0.50 120.30 123.82 A A A NE CZ NH1 ARG ARG ARG 161 161 161 N 1 8.74 0.50 120.30 129.04 A A A NE CZ NH1 ARG ARG ARG 179 179 179 N 1 -12.01 0.50 120.30 108.29 A A A NE CZ NH2 ARG ARG ARG 179 179 179 N 1 -13.58 2.20 113.40 99.82 A A A CA CB CG LYS LYS LYS 184 184 184 N 1 A ASN 149 36.60 -132.07 1 A SER 150 168.35 -4.56 1 A GLN 151 61.54 81.52 1 A GLN 153 -158.95 50.50 1 A LYS 178 -118.27 -120.89 29.84 0.234 0.142 2.20 8.0 7828 99.7 1 2. 2.20 8.0 117 1240 0 0 1123 0.013 0.020 0.045 0.040 0.049 0.053 2.366 2.500 3.897 3.500 5.559 3.800 8.454 6.600 0.015 0.025 0.161 0.180 0.207 0.400 0.203 0.400 0.219 0.400 2.7 3.6 17.5 10.0 38.6 10.0 2.20 25.0 1ASV 9620 0.0 0.062 1 3.93 99.0 refinement PROLSQ data reduction DENZO data scaling SCALEPACK AVIAN SARCOMA VIRUS INTEGRASE, HYDROXYETHYL GROUP Avian sarcoma virus integrase catalytic core domain 1 N N 2 N N A SER 98 A SER 51 HELX_P A VAL 111 A VAL 64 1 2 14 A SER 124 A SER 77 HELX_P A THR 127 A THR 80 1 3 4 A LYS 129 A LYS 82 HELX_P A TRP 138 A TRP 91 1 4 10 A ALA 154 A ALA 107 HELX_P A ASP 174 A ASP 127 1 5 21 A THR 182 A THR 135 HELX_P A LEU 196 A LEU 149 1 6 15 covale 1.317 A SER 124 A C SER 77 1_555 A OCY 125 A N OCY 78 1_555 covale 1.325 A OCY 125 A C OCY 78 1_555 A PHE 126 A N PHE 79 1_555 DNA INTEGRATION DNA INTEGRATION A ALA 72 A ALA 25 1 A PRO 73 A PRO 26 1.81 POL_RSVP UNP 1 1 P03354 TVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAK LVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLV VGQVLEPLRLKHPSLCMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKVQREPGVQYLGYKLGSTYVAPVGL VAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPFYEQLRGSDPNEAREWNLDMKMAWREIVRLSTTAALERWDPALPL EGAVARCEQGAIGVLGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPACFREDLPLP EGILLALKGFAGKIRSSDTPSIFDIARPLHVSLKVRVTDHPVPGPTVFTDASSSTHKGVVVWREGPRWEIKEIADLGASV QQLEARAVAMALLLWPTTPTNVVTDSAFVAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPGFFTEGN DVADSQATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIWQTDFTLE PRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPG NSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRI ETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKDEVTKKDEASPLFAGISDWIPWEDEQEGLQGETASN KQERPGEDTLAANES 624 779 1ASV 52 207 P03354 A 1 5 160 1 VAL CONFLICT ALA 101 1ASV A P03354 UNP 673 54 1 ARG CONFLICT LYS 166 1ASV A P03354 UNP 738 119 5 anti-parallel anti-parallel parallel parallel A ALA 87 A ALA 40 A HIS 93 A HIS 46 A TRP 76 A TRP 29 A THR 83 A THR 36 A ILE 60 A ILE 13 A PRO 69 A PRO 22 A ALA 117 A ALA 70 A THR 120 A THR 73 A ILE 140 A ILE 93 A THR 143 A THR 96 ACTIVE SITE Author 3 A ASP 64 A ASP 17 3 1_555 A ASP 121 A ASP 74 3 1_555 A GLU 157 A GLU 110 3 1_555 96 P 43 21 2