0.012514
0.007225
0.000000
0.000000
0.014450
0.000000
0.000000
0.000000
0.014235
0.00000
0.00000
0.00000
Klumpp, M.
Baumeister, W.
Essen, L.-O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
79.910
79.910
70.250
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
91
263
270
10.1016/S0092-8674(00)80408-0
9346243
Structure of the substrate binding domain of the thermosome, an archaeal group II chaperonin.
1997
10.2210/pdb1asx/pdb
pdb_00001asx
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1997-03
MARRESEARCH
GRAPHITE(002)
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH2R
17822.625
THERMOSOME
ALPHA SUBUNIT, APICAL DOMAIN, SUBSTRATE-BINDING DOMAIN
1
man
polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
18.015
water
6
nat
water
no
no
MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQK
GIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNHHHHHH
MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQK
GIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Thermoplasma
Escherichia
Escherichia coli
sample
25905
BL21
CYTOPLASM
THSA
2303
Thermoplasma acidophilum
THSA
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PLASMID
PRSET6A
1
3.63
70.
3.5
pH 3.5
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Database references
Derived calculations
Refinement description
1
0
1997-12-03
1
1
2008-03-24
1
2
2011-07-13
1
3
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1ASX CRYSTAL FORM EXHIBITS SEGMENTAL MOVEMENT OF A REGION, CALLED HELICAL PROTRUSION, IN COMPARISON TO PDB ENTRY 1ASS
Y
BNL
1997-08-11
REL
REL
PO4
PHOSPHATE ION
HOH
water
1ASS
GLOBULAR DOMAIN PORTION OF CRYSTAL FORM A (PDB ENTRY 1ASS)
PDB
experimental model
PO4
7
2
PO4
PO4
160
A
HOH
1
3
HOH
HOH
161
A
HOH
2
3
HOH
HOH
162
A
HOH
3
3
HOH
HOH
163
A
HOH
4
3
HOH
HOH
164
A
HOH
5
3
HOH
HOH
165
A
HOH
6
3
HOH
HOH
166
A
MET
1
n
1
MET
1
A
SER
2
n
2
SER
2
A
GLY
3
n
3
GLY
3
A
ILE
4
n
4
ILE
4
A
VAL
5
n
5
VAL
5
A
ILE
6
n
6
ILE
6
A
ASP
7
n
7
ASP
7
A
LYS
8
n
8
LYS
8
A
GLU
9
n
9
GLU
9
A
LYS
10
n
10
LYS
10
A
VAL
11
n
11
VAL
11
A
HIS
12
n
12
HIS
12
A
SER
13
n
13
SER
13
A
LYS
14
n
14
LYS
14
A
MET
15
n
15
MET
15
A
PRO
16
n
16
PRO
16
A
ASP
17
n
17
ASP
17
A
VAL
18
n
18
VAL
18
A
VAL
19
n
19
VAL
19
A
LYS
20
n
20
LYS
20
A
ASN
21
n
21
ASN
21
A
ALA
22
n
22
ALA
22
A
LYS
23
n
23
LYS
23
A
ILE
24
n
24
ILE
24
A
ALA
25
n
25
ALA
25
A
LEU
26
n
26
LEU
26
A
ILE
27
n
27
ILE
27
A
ASP
28
n
28
ASP
28
A
SER
29
n
29
SER
29
A
ALA
30
n
30
ALA
30
A
LEU
31
n
31
LEU
31
A
GLU
32
n
32
GLU
32
A
ILE
33
n
33
ILE
33
A
LYS
34
n
34
LYS
34
A
LYS
35
n
35
LYS
35
A
THR
36
n
36
THR
36
A
GLU
37
n
37
GLU
37
A
ILE
38
n
38
ILE
38
A
GLU
39
n
39
GLU
39
A
ALA
40
n
40
ALA
40
A
LYS
41
n
41
LYS
41
A
VAL
42
n
42
VAL
42
A
GLN
43
n
43
GLN
43
A
ILE
44
n
44
ILE
44
A
SER
45
n
45
SER
45
A
ASP
46
n
46
ASP
46
A
PRO
47
n
47
PRO
47
A
SER
48
n
48
SER
48
A
LYS
49
n
49
LYS
49
A
ILE
50
n
50
ILE
50
A
GLN
51
n
51
GLN
51
A
ASP
52
n
52
ASP
52
A
PHE
53
n
53
PHE
53
A
LEU
54
n
54
LEU
54
A
ASN
55
n
55
ASN
55
A
GLN
56
n
56
GLN
56
A
GLU
57
n
57
GLU
57
A
THR
58
n
58
THR
58
A
ASN
59
n
59
ASN
59
A
THR
60
n
60
THR
60
A
PHE
61
n
61
PHE
61
A
LYS
62
n
62
LYS
62
A
GLN
63
n
63
GLN
63
A
MET
64
n
64
MET
64
A
VAL
65
n
65
VAL
65
A
GLU
66
n
66
GLU
66
A
LYS
67
n
67
LYS
67
A
ILE
68
n
68
ILE
68
A
LYS
69
n
69
LYS
69
A
LYS
70
n
70
LYS
70
A
SER
71
n
71
SER
71
A
GLY
72
n
72
GLY
72
A
ALA
73
n
73
ALA
73
A
ASN
74
n
74
ASN
74
A
VAL
75
n
75
VAL
75
A
VAL
76
n
76
VAL
76
A
LEU
77
n
77
LEU
77
A
CYS
78
n
78
CYS
78
A
GLN
79
n
79
GLN
79
A
LYS
80
n
80
LYS
80
A
GLY
81
n
81
GLY
81
A
ILE
82
n
82
ILE
82
A
ASP
83
n
83
ASP
83
A
ASP
84
n
84
ASP
84
A
VAL
85
n
85
VAL
85
A
ALA
86
n
86
ALA
86
A
GLN
87
n
87
GLN
87
A
HIS
88
n
88
HIS
88
A
TYR
89
n
89
TYR
89
A
LEU
90
n
90
LEU
90
A
ALA
91
n
91
ALA
91
A
LYS
92
n
92
LYS
92
A
GLU
93
n
93
GLU
93
A
GLY
94
n
94
GLY
94
A
ILE
95
n
95
ILE
95
A
TYR
96
n
96
TYR
96
A
ALA
97
n
97
ALA
97
A
VAL
98
n
98
VAL
98
A
ARG
99
n
99
ARG
99
A
ARG
100
n
100
ARG
100
A
VAL
101
n
101
VAL
101
A
LYS
102
n
102
LYS
102
A
LYS
103
n
103
LYS
103
A
SER
104
n
104
SER
104
A
ASP
105
n
105
ASP
105
A
MET
106
n
106
MET
106
A
GLU
107
n
107
GLU
107
A
LYS
108
n
108
LYS
108
A
LEU
109
n
109
LEU
109
A
ALA
110
n
110
ALA
110
A
LYS
111
n
111
LYS
111
A
ALA
112
n
112
ALA
112
A
THR
113
n
113
THR
113
A
GLY
114
n
114
GLY
114
A
ALA
115
n
115
ALA
115
A
LYS
116
n
116
LYS
116
A
ILE
117
n
117
ILE
117
A
VAL
118
n
118
VAL
118
A
THR
119
n
119
THR
119
A
ASP
120
n
120
ASP
120
A
LEU
121
n
121
LEU
121
A
ASP
122
n
122
ASP
122
A
ASP
123
n
123
ASP
123
A
LEU
124
n
124
LEU
124
A
THR
125
n
125
THR
125
A
PRO
126
n
126
PRO
126
A
SER
127
n
127
SER
127
A
VAL
128
n
128
VAL
128
A
LEU
129
n
129
LEU
129
A
GLY
130
n
130
GLY
130
A
GLU
131
n
131
GLU
131
A
ALA
132
n
132
ALA
132
A
GLU
133
n
133
GLU
133
A
THR
134
n
134
THR
134
A
VAL
135
n
135
VAL
135
A
GLU
136
n
136
GLU
136
A
GLU
137
n
137
GLU
137
A
ARG
138
n
138
ARG
138
A
LYS
139
n
139
LYS
139
A
ILE
140
n
140
ILE
140
A
GLY
141
n
141
GLY
141
A
ASP
142
n
142
ASP
142
A
ASP
143
n
143
ASP
143
A
ARG
144
n
144
ARG
144
A
MET
145
n
145
MET
145
A
THR
146
n
146
THR
146
A
PHE
147
n
147
PHE
147
A
VAL
148
n
148
VAL
148
A
MET
149
n
149
MET
149
A
GLY
150
n
150
GLY
150
A
CYS
151
n
151
CYS
151
A
LYS
152
n
152
LYS
152
A
n
153
153
A
n
154
154
A
n
155
155
A
n
156
156
A
n
157
157
A
n
158
158
A
n
159
159
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
2610
-27
15140
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_556
y,x,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
70.2500000000
A
O
ILE
4
A
O
ILE
4
A
N
VAL
148
A
N
VAL
148
A
O
ASP
143
A
O
ASP
143
A
N
ILE
140
A
N
ILE
140
A
O
VAL
135
A
O
VAL
135
A
N
VAL
19
A
N
VAL
19
A
O
GLY
130
A
O
GLY
130
A
N
ILE
24
A
N
ILE
24
A
O
ALA
25
A
O
ALA
25
A
N
VAL
75
A
N
VAL
75
A
O
VAL
76
A
O
VAL
76
A
N
TYR
96
A
N
TYR
96
1
A
CD
LYS
34
A
CD
LYS
34
0
Y
1
A
CE
LYS
34
A
CE
LYS
34
0
Y
1
A
NZ
LYS
34
A
NZ
LYS
34
0
Y
1
A
CD
GLN
56
A
CD
GLN
56
0
Y
1
A
OE1
GLN
56
A
OE1
GLN
56
0
Y
1
A
NE2
GLN
56
A
NE2
GLN
56
0
Y
1
A
CD
LYS
69
A
CD
LYS
69
0
Y
1
A
CE
LYS
69
A
CE
LYS
69
0
Y
1
A
NZ
LYS
69
A
NZ
LYS
69
0
Y
1
A
CG
LYS
70
A
CG
LYS
70
0
Y
1
A
CD
LYS
70
A
CD
LYS
70
0
Y
1
A
CE
LYS
70
A
CE
LYS
70
0
Y
1
A
NZ
LYS
70
A
NZ
LYS
70
0
Y
1
A
CD
LYS
103
A
CD
LYS
103
0
Y
1
A
CE
LYS
103
A
CE
LYS
103
0
Y
1
A
NZ
LYS
103
A
NZ
LYS
103
0
Y
1
A
CD
LYS
116
A
CD
LYS
116
0
Y
1
A
CE
LYS
116
A
CE
LYS
116
0
Y
1
A
NZ
LYS
116
A
NZ
LYS
116
0
Y
1
A
CD
LYS
139
A
CD
LYS
139
0
Y
1
A
CE
LYS
139
A
CE
LYS
139
0
Y
1
A
NZ
LYS
139
A
NZ
LYS
139
0
Y
1
A
ASN
153
A
ASN
153
1
Y
1
A
HIS
154
A
HIS
154
1
Y
1
A
HIS
155
A
HIS
155
1
Y
1
A
HIS
156
A
HIS
156
1
Y
1
A
HIS
157
A
HIS
157
1
Y
1
A
HIS
158
A
HIS
158
1
Y
1
A
HIS
159
A
HIS
159
1
Y
1
17.39
2.50
113.10
130.49
A
A
A
N
CA
C
GLY
GLY
GLY
3
3
3
N
1
A
ASP
7
-71.69
26.10
1
A
SER
13
-56.95
-90.05
1
A
LYS
14
-65.96
27.25
1
A
ASN
21
62.54
62.43
1
A
LEU
31
-97.76
52.66
1
A
LYS
80
-106.19
-166.91
1
A
CYS
151
-59.82
106.27
PARHCSDX.PRO
TOPHCSDX.PRO
36.0
20.55
14.18
0.0
20.55
0.0
34.00
0.2720000
0.2220000
0.2220000
2.8
10.
390
6205
6.3
94.8
CONCENTRIC SHELLS
1000000.
0.001
1
RESTRAINED
RFREE
0.0
MOLECULAR REPLACEMENT
GLOBULAR DOMAIN PORTION OF CRYSTAL FORM A (PDB ENTRY 1ASS)
0.44
0.35
5.0
0.41
0.39
2.8
10.
6
1186
5
0
1175
0.011
1.575
23.93
1.351
2.90
71.8
39.9
2.8
19.
1ASX
6335
-3.
0.0640000
1
20.6
2.7
94.8
0.1450000
2.8
6.9
1
71.8
phasing
SOLOMON
model building
X-PLOR
3.851
refinement
X-PLOR
3.851
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
3.851
APICAL DOMAIN OF THE CHAPERONIN FROM THERMOPLASMA ACIDOPHILUM
1
N
N
2
N
N
3
N
N
A
LYS
35
A
LYS
35
HELX_P
A
GLN
43
A
GLN
43
1
1
9
A
PRO
47
A
PRO
47
HELX_P
A
LYS
67
A
LYS
67
5
2
21
A
LYS
69
A
LYS
69
HELX_P
A
SER
71
A
SER
71
5
3
3
A
ASP
84
A
ASP
84
HELX_P
A
LYS
92
A
LYS
92
1
4
9
A
LYS
103
A
LYS
103
HELX_P
A
THR
113
A
THR
113
1
5
11
A
LEU
121
A
LEU
121
HELX_P
A
ASP
123
A
ASP
123
5
6
3
A
PRO
126
A
PRO
126
HELX_P
A
VAL
128
A
VAL
128
5
7
3
CHAPERONIN
CHAPERONIN, HSP60, THERMOSOME, TCP1, GROEL, THERMOPLASMA ACIDOPHILUM, ATP-BINDING
THSA_THEAC
UNP
1
1
P48424
MMTGQVPILVLKEGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKM
IVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTDDATLRKIALTALS
GKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALID
SALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEK
LAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKE
DGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKAEHEKGRISVGVDLDN
NGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKSTPPSGQGGQGQGMPGGGMPEY
214
365
1ASX
2
153
P48424
A
1
2
153
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
A
ILE
4
A
ILE
4
A
ILE
6
A
ILE
6
A
ASP
143
A
ASP
143
A
MET
149
A
MET
149
A
THR
134
A
THR
134
A
ILE
140
A
ILE
140
A
VAL
18
A
VAL
18
A
LYS
20
A
LYS
20
A
GLY
130
A
GLY
130
A
ALA
132
A
ALA
132
A
ALA
22
A
ALA
22
A
ILE
27
A
ILE
27
A
VAL
75
A
VAL
75
A
CYS
78
A
CYS
78
A
TYR
96
A
TYR
96
A
VAL
98
A
VAL
98
BINDING SITE FOR RESIDUE PO4 A 160
A
PO4
160
Software
7
A
GLU
32
A
GLU
32
7
1_555
A
ILE
33
A
ILE
33
7
1_555
A
PRO
47
A
PRO
47
7
4_556
A
SER
48
A
SER
48
7
4_556
A
ILE
50
A
ILE
50
7
4_556
A
GLN
51
A
GLN
51
7
4_556
A
ASP
83
A
ASP
83
7
1_555
152
P 31 2 1