0.009848
0.000000
0.000000
0.000000
0.009848
0.000000
0.000000
0.000000
0.009848
0.00000
0.00000
0.00000
Hall, T.M.T.
Porter, J.A.
Young, K.E.
Koonin, E.V.
Beachy, P.A.
Leahy, D.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
90.00
101.540
101.540
101.540
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
91
85
97
10.1016/S0092-8674(01)80011-8
9335337
Crystal structure of a Hedgehog autoprocessing domain: homology between Hedgehog and self-splicing proteins.
1997
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRROR
IMAGE PLATE
1996-11-15
FUJI
SI(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9919
1.0
X4A
NSLS
0.9919
SYNCHROTRON
NSLS BEAMLINE X4A
15985.778
17-HEDGEHOG
17-KDA FRAGMENT OF C-TERMINAL DOMAIN
1
man
polymer
18.015
water
126
nat
water
no
yes
CFTPESTALLESGVRKPLGELSIGDRVLS(MSE)TANGQAVYSEVILF(MSE)DRNLEQ(MSE)QNFVQLHTDGGAVLTV
TPAHLVSVWQPESQKLTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSKGVVAPLTREGTIVVNSVAASCYA
CFTPESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTDGGAVLTVTPAHLVSVWQPE
SQKLTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSKGVVAPLTREGTIVVNSVAASCYA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
FRUIT FLY
sample
B834
Drosophila melanogaster
Escherichia coli
B834 (DE3) PLYSS
PRSET B
1
2.73
59.
DATA WERE COLLECTED AT 0.9919, 0.9793, 0.9791, AND 0.9686 ANGSTROM. VALUES FOR DATA COLLECTION AND DATA QUALITY ARE FOR 0.9919.
5.8
20% PEG 3350, 80 mM AMMONIUM SULFATE, 10 mM SODIUM CACODYLATE pH 5.8
pdbx_database_status
refine
repository
Initial release
Version format compliance
Version format compliance
Other
Refinement description
1
0
1997-11-12
1
1
2008-03-24
1
2
2011-07-13
1
3
2017-09-13
_pdbx_database_status.process_site
_refine.pdbx_method_to_determine_struct
Y
BNL
1997-08-15
REL
REL
HOH
water
HOH
501
2
HOH
HOH
501
A
HOH
502
2
HOH
HOH
502
A
HOH
503
2
HOH
HOH
503
A
HOH
504
2
HOH
HOH
504
A
HOH
505
2
HOH
HOH
505
A
HOH
506
2
HOH
HOH
506
A
HOH
507
2
HOH
HOH
507
A
HOH
508
2
HOH
HOH
508
A
HOH
509
2
HOH
HOH
509
A
HOH
510
2
HOH
HOH
510
A
HOH
511
2
HOH
HOH
511
A
HOH
512
2
HOH
HOH
512
A
HOH
513
2
HOH
HOH
513
A
HOH
514
2
HOH
HOH
514
A
HOH
515
2
HOH
HOH
515
A
HOH
516
2
HOH
HOH
516
A
HOH
517
2
HOH
HOH
517
A
HOH
518
2
HOH
HOH
518
A
HOH
519
2
HOH
HOH
519
A
HOH
520
2
HOH
HOH
520
A
HOH
521
2
HOH
HOH
521
A
HOH
522
2
HOH
HOH
522
A
HOH
523
2
HOH
HOH
523
A
HOH
524
2
HOH
HOH
524
A
HOH
525
2
HOH
HOH
525
A
HOH
526
2
HOH
HOH
526
A
HOH
527
2
HOH
HOH
527
A
HOH
528
2
HOH
HOH
528
A
HOH
529
2
HOH
HOH
529
A
HOH
530
2
HOH
HOH
530
A
HOH
531
2
HOH
HOH
531
A
HOH
532
2
HOH
HOH
532
A
HOH
533
2
HOH
HOH
533
A
HOH
534
2
HOH
HOH
534
A
HOH
535
2
HOH
HOH
535
A
HOH
537
2
HOH
HOH
537
A
HOH
538
2
HOH
HOH
538
A
HOH
539
2
HOH
HOH
539
A
HOH
540
2
HOH
HOH
540
A
HOH
541
2
HOH
HOH
541
A
HOH
542
2
HOH
HOH
542
A
HOH
543
2
HOH
HOH
543
A
HOH
544
2
HOH
HOH
544
A
HOH
545
2
HOH
HOH
545
A
HOH
546
2
HOH
HOH
546
A
HOH
547
2
HOH
HOH
547
A
HOH
548
2
HOH
HOH
548
A
HOH
549
2
HOH
HOH
549
A
HOH
550
2
HOH
HOH
550
A
HOH
551
2
HOH
HOH
551
A
HOH
552
2
HOH
HOH
552
A
HOH
553
2
HOH
HOH
553
A
HOH
554
2
HOH
HOH
554
A
HOH
555
2
HOH
HOH
555
A
HOH
556
2
HOH
HOH
556
A
HOH
557
2
HOH
HOH
557
A
HOH
558
2
HOH
HOH
558
A
HOH
559
2
HOH
HOH
559
A
HOH
560
2
HOH
HOH
560
A
HOH
561
2
HOH
HOH
561
A
HOH
562
2
HOH
HOH
562
A
HOH
563
2
HOH
HOH
563
A
HOH
564
2
HOH
HOH
564
A
HOH
565
2
HOH
HOH
565
A
HOH
566
2
HOH
HOH
566
A
HOH
567
2
HOH
HOH
567
A
HOH
568
2
HOH
HOH
568
A
HOH
569
2
HOH
HOH
569
A
HOH
570
2
HOH
HOH
570
A
HOH
571
2
HOH
HOH
571
A
HOH
572
2
HOH
HOH
572
A
HOH
573
2
HOH
HOH
573
A
HOH
574
2
HOH
HOH
574
A
HOH
575
2
HOH
HOH
575
A
HOH
576
2
HOH
HOH
576
A
HOH
577
2
HOH
HOH
577
A
HOH
578
2
HOH
HOH
578
A
HOH
579
2
HOH
HOH
579
A
HOH
580
2
HOH
HOH
580
A
HOH
581
2
HOH
HOH
581
A
HOH
582
2
HOH
HOH
582
A
HOH
583
2
HOH
HOH
583
A
HOH
584
2
HOH
HOH
584
A
HOH
585
2
HOH
HOH
585
A
HOH
586
2
HOH
HOH
586
A
HOH
587
2
HOH
HOH
587
A
HOH
588
2
HOH
HOH
588
A
HOH
589
2
HOH
HOH
589
A
HOH
590
2
HOH
HOH
590
A
HOH
591
2
HOH
HOH
591
A
HOH
593
2
HOH
HOH
593
A
HOH
594
2
HOH
HOH
594
A
HOH
595
2
HOH
HOH
595
A
HOH
597
2
HOH
HOH
597
A
HOH
598
2
HOH
HOH
598
A
HOH
599
2
HOH
HOH
599
A
HOH
601
2
HOH
HOH
601
A
HOH
602
2
HOH
HOH
602
A
HOH
604
2
HOH
HOH
604
A
HOH
605
2
HOH
HOH
605
A
HOH
606
2
HOH
HOH
606
A
HOH
607
2
HOH
HOH
607
A
HOH
608
2
HOH
HOH
608
A
HOH
609
2
HOH
HOH
609
A
HOH
610
2
HOH
HOH
610
A
HOH
611
2
HOH
HOH
611
A
HOH
612
2
HOH
HOH
612
A
HOH
613
2
HOH
HOH
613
A
HOH
614
2
HOH
HOH
614
A
HOH
615
2
HOH
HOH
615
A
HOH
616
2
HOH
HOH
616
A
HOH
617
2
HOH
HOH
617
A
HOH
618
2
HOH
HOH
618
A
HOH
619
2
HOH
HOH
619
A
HOH
620
2
HOH
HOH
620
A
HOH
621
2
HOH
HOH
621
A
HOH
622
2
HOH
HOH
622
A
HOH
623
2
HOH
HOH
623
A
HOH
624
2
HOH
HOH
624
A
HOH
625
2
HOH
HOH
625
A
HOH
626
2
HOH
HOH
626
A
HOH
627
2
HOH
HOH
627
A
HOH
628
2
HOH
HOH
628
A
HOH
629
2
HOH
HOH
629
A
HOH
630
2
HOH
HOH
630
A
HOH
631
2
HOH
HOH
631
A
CYS
258
n
1
CYS
258
A
PHE
259
n
2
PHE
259
A
THR
260
n
3
THR
260
A
PRO
261
n
4
PRO
261
A
GLU
262
n
5
GLU
262
A
SER
263
n
6
SER
263
A
THR
264
n
7
THR
264
A
ALA
265
n
8
ALA
265
A
LEU
266
n
9
LEU
266
A
LEU
267
n
10
LEU
267
A
GLU
268
n
11
GLU
268
A
SER
269
n
12
SER
269
A
GLY
270
n
13
GLY
270
A
VAL
271
n
14
VAL
271
A
ARG
272
n
15
ARG
272
A
LYS
273
n
16
LYS
273
A
PRO
274
n
17
PRO
274
A
LEU
275
n
18
LEU
275
A
GLY
276
n
19
GLY
276
A
GLU
277
n
20
GLU
277
A
LEU
278
n
21
LEU
278
A
SER
279
n
22
SER
279
A
ILE
280
n
23
ILE
280
A
GLY
281
n
24
GLY
281
A
ASP
282
n
25
ASP
282
A
ARG
283
n
26
ARG
283
A
VAL
284
n
27
VAL
284
A
LEU
285
n
28
LEU
285
A
SER
286
n
29
SER
286
A
MSE
287
n
30
MSE
287
A
THR
288
n
31
THR
288
A
ALA
289
n
32
ALA
289
A
ASN
290
n
33
ASN
290
A
GLY
291
n
34
GLY
291
A
GLN
292
n
35
GLN
292
A
ALA
293
n
36
ALA
293
A
VAL
294
n
37
VAL
294
A
TYR
295
n
38
TYR
295
A
SER
296
n
39
SER
296
A
GLU
297
n
40
GLU
297
A
VAL
298
n
41
VAL
298
A
ILE
299
n
42
ILE
299
A
LEU
300
n
43
LEU
300
A
PHE
301
n
44
PHE
301
A
MSE
302
n
45
MSE
302
A
ASP
303
n
46
ASP
303
A
ARG
304
n
47
ARG
304
A
ASN
305
n
48
ASN
305
A
LEU
306
n
49
LEU
306
A
GLU
307
n
50
GLU
307
A
GLN
308
n
51
GLN
308
A
MSE
309
n
52
MSE
309
A
GLN
310
n
53
GLN
310
A
ASN
311
n
54
ASN
311
A
PHE
312
n
55
PHE
312
A
VAL
313
n
56
VAL
313
A
GLN
314
n
57
GLN
314
A
LEU
315
n
58
LEU
315
A
HIS
316
n
59
HIS
316
A
THR
317
n
60
THR
317
A
ASP
318
n
61
ASP
318
A
GLY
319
n
62
GLY
319
A
GLY
320
n
63
GLY
320
A
ALA
321
n
64
ALA
321
A
VAL
322
n
65
VAL
322
A
LEU
323
n
66
LEU
323
A
THR
324
n
67
THR
324
A
VAL
325
n
68
VAL
325
A
THR
326
n
69
THR
326
A
PRO
327
n
70
PRO
327
A
ALA
328
n
71
ALA
328
A
HIS
329
n
72
HIS
329
A
LEU
330
n
73
LEU
330
A
VAL
331
n
74
VAL
331
A
SER
332
n
75
SER
332
A
VAL
333
n
76
VAL
333
A
TRP
334
n
77
TRP
334
A
GLN
335
n
78
GLN
335
A
PRO
336
n
79
PRO
336
A
GLU
337
n
80
GLU
337
A
SER
338
n
81
SER
338
A
GLN
339
n
82
GLN
339
A
LYS
340
n
83
LYS
340
A
LEU
341
n
84
LEU
341
A
THR
342
n
85
THR
342
A
PHE
343
n
86
PHE
343
A
VAL
344
n
87
VAL
344
A
PHE
345
n
88
PHE
345
A
ALA
346
n
89
ALA
346
A
ASP
347
n
90
ASP
347
A
ARG
348
n
91
ARG
348
A
ILE
349
n
92
ILE
349
A
GLU
350
n
93
GLU
350
A
GLU
351
n
94
GLU
351
A
LYS
352
n
95
LYS
352
A
ASN
353
n
96
ASN
353
A
GLN
354
n
97
GLN
354
A
VAL
355
n
98
VAL
355
A
LEU
356
n
99
LEU
356
A
VAL
357
n
100
VAL
357
A
ARG
358
n
101
ARG
358
A
ASP
359
n
102
ASP
359
A
VAL
360
n
103
VAL
360
A
GLU
361
n
104
GLU
361
A
THR
362
n
105
THR
362
A
GLY
363
n
106
GLY
363
A
GLU
364
n
107
GLU
364
A
LEU
365
n
108
LEU
365
A
ARG
366
n
109
ARG
366
A
PRO
367
n
110
PRO
367
A
GLN
368
n
111
GLN
368
A
ARG
369
n
112
ARG
369
A
VAL
370
n
113
VAL
370
A
VAL
371
n
114
VAL
371
A
LYS
372
n
115
LYS
372
A
VAL
373
n
116
VAL
373
A
GLY
374
n
117
GLY
374
A
SER
375
n
118
SER
375
A
VAL
376
n
119
VAL
376
A
ARG
377
n
120
ARG
377
A
SER
378
n
121
SER
378
A
LYS
379
n
122
LYS
379
A
GLY
380
n
123
GLY
380
A
VAL
381
n
124
VAL
381
A
VAL
382
n
125
VAL
382
A
ALA
383
n
126
ALA
383
A
PRO
384
n
127
PRO
384
A
LEU
385
n
128
LEU
385
A
THR
386
n
129
THR
386
A
ARG
387
n
130
ARG
387
A
GLU
388
n
131
GLU
388
A
GLY
389
n
132
GLY
389
A
THR
390
n
133
THR
390
A
ILE
391
n
134
ILE
391
A
VAL
392
n
135
VAL
392
A
VAL
393
n
136
VAL
393
A
ASN
394
n
137
ASN
394
A
SER
395
n
138
SER
395
A
VAL
396
n
139
VAL
396
A
ALA
397
n
140
ALA
397
A
ALA
398
n
141
ALA
398
A
SER
399
n
142
SER
399
A
CYS
400
n
143
CYS
400
A
TYR
401
n
144
TYR
401
A
ALA
402
n
145
ALA
402
A
author_defined_assembly
2
dimeric
A
MSE
287
SELENOMETHIONINE
A
MSE
30
MET
A
MSE
302
SELENOMETHIONINE
A
MSE
45
MET
A
MSE
309
SELENOMETHIONINE
A
MSE
52
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
15_556
-x+1/2,y,-z+1
crystal symmetry operation
50.7700000000
0.0000000000
101.5400000000
A
O
ALA
265
A
O
ALA
8
A
N
LYS
273
A
N
LYS
16
A
O
VAL
284
A
O
VAL
27
A
N
SER
296
A
N
SER
39
A
O
LEU
323
A
O
LEU
66
A
N
LEU
315
A
N
LEU
58
A
O
GLN
310
A
O
GLN
53
A
N
SER
378
A
N
SER
121
A
O
VAL
331
A
O
VAL
74
A
N
VAL
344
A
N
VAL
87
A
O
VAL
355
A
O
VAL
98
A
N
GLN
368
A
N
GLN
111
A
O
ILE
391
A
O
ILE
134
A
N
ALA
398
A
N
ALA
141
A
O
ILE
299
A
O
ILE
42
A
N
LEU
385
A
N
LEU
128
1
A
A
H3
HD1
CYS
HIS
258
329
1.35
1
A
A
HH21
O
ARG
HOH
358
591
1.57
1
A
A
O
H1
HOH
HOH
522
542
1.59
1
A
ARG
304
-164.26
89.24
1
A
LYS
352
84.77
-26.82
1
A
SER
395
70.95
-1.09
PARAMCSDX_MOD.PRO
TOPHCSDX_SE.PRO
PARAM19.SOL
TOPH19.ION
PARAM19.ION
TOPH19.SOL
PARAM19X.SE
21.5
The Friedel pairs were used in phasing
0.2750
0.0077
0.2176
0.2176
1.9
6.0
1289
13163
10.0
100.0
RANDOM
1
ALL BUT LAST ROUND
2.0
MAD
1.9
6.0
126
1870
0
0
1744
0.008
1.956
25.38
1.135
2.072
1.5
3.000
2.0
4.354
2.0
6.532
2.5
0.3155000
0.025
0.2932000
1.98
150
1277
8
9.915
96.75
1.9
100.0
1AT0
26790
2.0
0.092
1
19.9
10.3
100.0
1.9
1.98
4.2
0.529
99.9
model building
X-PLOR
3.8
refinement
X-PLOR
3.8
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
3.8
17-HEDGEHOG
17-kDA fragment of hedgehog C-terminal autoprocessing domain
1
N
N
2
N
N
A
LEU
275
A
LEU
18
HELX_P
A
GLU
277
A
GLU
20
5
1
3
A
ALA
346
A
ALA
89
HELX_P
A
ARG
348
A
ARG
91
5
2
3
covale
1.330
A
MSE
287
A
N
MSE
30
1_555
A
SER
286
A
C
SER
29
1_555
covale
1.325
A
MSE
287
A
C
MSE
30
1_555
A
THR
288
A
N
THR
31
1_555
covale
1.328
A
MSE
302
A
N
MSE
45
1_555
A
PHE
301
A
C
PHE
44
1_555
covale
1.326
A
MSE
302
A
C
MSE
45
1_555
A
ASP
303
A
N
ASP
46
1_555
covale
1.333
A
MSE
309
A
N
MSE
52
1_555
A
GLN
308
A
C
GLN
51
1_555
covale
1.332
A
MSE
309
A
C
MSE
52
1_555
A
GLN
310
A
N
GLN
53
1_555
SIGNALING PROTEIN
DEVELOPMENTAL SIGNALING MOLECULE, CHOLESTEROL TRANSFER, SIGNALING PROTEIN
HH_DROME
UNP
1
1
Q02936
MDNHSSVPWASAASVTCLSLDAKCHSSSSSSSSKSAASSISAIPQEETQTMRHIAHTQRCLSRLTSLVALLLIVLPMVFS
PAHSCGPGRGLGRHRARNLYPLVLKQTIPNLSEYTNSASGPLEGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLMSK
RCKEKLNVLAYSVMNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYVSRRH
IYCSVKSDSSISSHVHGCFTPESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTDGG
AVLTVTPAHLVSVWQPESQKLTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSKGVVAPLTREGTIVVNSVAASC
YAVINSQSLAHWGLAPMRLLSTLEAWLPAKEQLHSSPKVVSSAQQQNGIHWYANALYKVKDYVLPQSWRHD
258
402
1AT0
258
402
Q02936
A
1
1
145
2
2
3
2
2
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
264
A
THR
7
A
LEU
266
A
LEU
9
A
ARG
272
A
ARG
15
A
PRO
274
A
PRO
17
A
ARG
283
A
ARG
26
A
SER
286
A
SER
29
A
VAL
294
A
VAL
37
A
GLU
297
A
GLU
40
A
VAL
322
A
VAL
65
A
THR
326
A
THR
69
A
GLN
310
A
GLN
53
A
THR
317
A
THR
60
A
VAL
370
A
VAL
113
A
SER
378
A
SER
121
A
LEU
330
A
LEU
73
A
GLN
335
A
GLN
78
A
LYS
340
A
LYS
83
A
PHE
345
A
PHE
88
A
GLN
354
A
GLN
97
A
ARG
358
A
ARG
101
A
LEU
365
A
LEU
108
A
ARG
369
A
ARG
112
A
THR
390
A
THR
133
A
VAL
393
A
VAL
136
A
VAL
396
A
VAL
139
A
SER
399
A
SER
142
A
VAL
298
A
VAL
41
A
ASN
305
A
ASN
48
A
VAL
381
A
VAL
124
A
THR
386
A
THR
129
AUTOPROCESSING ACTIVE SITE.
Software
4
A
CYS
258
A
CYS
1
4
1_555
A
HIS
329
A
HIS
72
4
1_555
A
ASP
303
A
ASP
46
4
1_555
A
THR
326
A
THR
69
4
1_555
199
I 21 3