0.013943
0.000000
0.000000
0.000000
0.011438
0.000000
0.000000
0.000000
0.012940
0.00000
0.00000
0.00000
Hoog, S.
Smith, W.W.
Qiu, X.
Abdel-Meguid, S.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
71.720
87.430
77.280
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H15 O3 P
166.155
DIISOPROPYL PHOSPHONATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
36
14023
14029
10.1021/bi9712697
9369473
Active site cavity of herpesvirus proteases revealed by the crystal structure of herpes simplex virus protease/inhibitor complex.
1997
10.2210/pdb1at3/pdb
pdb_00001at3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
COLLIMATOR
AREA DETECTOR
1996-05
SIEMENS
GRAPHITE(002)
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
SIEMENS
DIISOPROPYL PHOSPHATE COVALENTLY BOUND TO ACTIVE SITE SER 129
27055.979
HERPES SIMPLEX VIRUS TYPE II PROTEASE
2
man
polymer
166.155
DIISOPROPYL PHOSPHONATE
2
syn
non-polymer
18.015
water
43
nat
water
no
no
MASAEMRERLEAPLPDRAVPIYVAGFLALYDSGDPGELALDPDTVRAALPPENPLPINVDHRARCEVGRVLAVVNDPRGP
FFVGLIACVQLERVLETAASAAIFERRGPALSREERLLYLITNYLPSVSLSTKRRGDEVPPDRTLFAHVALCAIGRRLGT
IVTYDTSLDAAIAPFRHLDPATREGVRREAAEAELALAGRTWAPGVEALTHTLLSTAVNNMMLRDRWSLVAERRRQAGIA
GHTYLQA
MASAEMRERLEAPLPDRAVPIYVAGFLALYDSGDPGELALDPDTVRAALPPENPLPINVDHRARCEVGRVLAVVNDPRGP
FFVGLIACVQLERVLETAASAAIFERRGPALSREERLLYLITNYLPSVSLSTKRRGDEVPPDRTLFAHVALCAIGRRLGT
IVTYDTSLDAAIAPFRHLDPATREGVRREAAEAELALAGRTWAPGVEALTHTLLSTAVNNMMLRDRWSLVAERRRQAGIA
GHTYLQA
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Herpes simplex virus type 2
Simplexvirus
Escherichia
sample
10310
Human herpesvirus 2
562
Escherichia coli
1
2.57
52
5.0
10% PEG4000, PH 5.0
diffrn_source
pdbx_database_status
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Other
Database references
Derived calculations
Refinement description
1
0
1998-10-14
1
1
2008-03-24
1
2
2011-07-13
1
3
2018-03-07
1
4
2023-08-02
_diffrn_source.source
_pdbx_database_status.process_site
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1997-08-16
REL
DFP
DIISOPROPYL PHOSPHONATE
HOH
water
1VZV
PDB
experimental model
DFP
300
2
DFP
DFP
300
A
DFP
300
2
DFP
DFP
300
B
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
313
3
HOH
HOH
313
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
324
3
HOH
HOH
324
A
HOH
325
3
HOH
HOH
325
A
HOH
326
3
HOH
HOH
326
A
HOH
327
3
HOH
HOH
327
A
HOH
332
3
HOH
HOH
332
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
338
3
HOH
HOH
338
A
HOH
340
3
HOH
HOH
340
A
HOH
341
3
HOH
HOH
341
A
HOH
342
3
HOH
HOH
342
A
HOH
311
3
HOH
HOH
311
B
HOH
312
3
HOH
HOH
312
B
HOH
314
3
HOH
HOH
314
B
HOH
315
3
HOH
HOH
315
B
HOH
322
3
HOH
HOH
322
B
HOH
323
3
HOH
HOH
323
B
HOH
328
3
HOH
HOH
328
B
HOH
329
3
HOH
HOH
329
B
HOH
330
3
HOH
HOH
330
B
HOH
331
3
HOH
HOH
331
B
HOH
333
3
HOH
HOH
333
B
HOH
334
3
HOH
HOH
334
B
HOH
337
3
HOH
HOH
337
B
HOH
339
3
HOH
HOH
339
B
HOH
343
3
HOH
HOH
343
B
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
n
16
16
A
ARG
17
n
17
ARG
17
A
ALA
18
n
18
ALA
18
A
VAL
19
n
19
VAL
19
A
PRO
20
n
20
PRO
20
A
ILE
21
n
21
ILE
21
A
TYR
22
n
22
TYR
22
A
VAL
23
n
23
VAL
23
A
ALA
24
n
24
ALA
24
A
GLY
25
n
25
GLY
25
A
PHE
26
n
26
PHE
26
A
LEU
27
n
27
LEU
27
A
ALA
28
n
28
ALA
28
A
LEU
29
n
29
LEU
29
A
TYR
30
n
30
TYR
30
A
ASP
31
n
31
ASP
31
A
SER
32
n
32
SER
32
A
GLY
33
n
33
GLY
33
A
ASP
34
n
34
ASP
34
A
PRO
35
n
35
PRO
35
A
GLY
36
n
36
GLY
36
A
GLU
37
n
37
GLU
37
A
LEU
38
n
38
LEU
38
A
ALA
39
n
39
ALA
39
A
LEU
40
n
40
LEU
40
A
ASP
41
n
41
ASP
41
A
PRO
42
n
42
PRO
42
A
ASP
43
n
43
ASP
43
A
THR
44
n
44
THR
44
A
VAL
45
n
45
VAL
45
A
ARG
46
n
46
ARG
46
A
ALA
47
n
47
ALA
47
A
ALA
48
n
48
ALA
48
A
LEU
49
n
49
LEU
49
A
PRO
50
n
50
PRO
50
A
PRO
51
n
51
PRO
51
A
GLU
52
n
52
GLU
52
A
ASN
53
n
53
ASN
53
A
PRO
54
n
54
PRO
54
A
LEU
55
n
55
LEU
55
A
PRO
56
n
56
PRO
56
A
ILE
57
n
57
ILE
57
A
ASN
58
n
58
ASN
58
A
VAL
59
n
59
VAL
59
A
ASP
60
n
60
ASP
60
A
HIS
61
n
61
HIS
61
A
ARG
62
n
62
ARG
62
A
ALA
63
n
63
ALA
63
A
ARG
64
n
64
ARG
64
A
CYS
65
n
65
CYS
65
A
GLU
66
n
66
GLU
66
A
VAL
67
n
67
VAL
67
A
GLY
68
n
68
GLY
68
A
ARG
69
n
69
ARG
69
A
VAL
70
n
70
VAL
70
A
LEU
71
n
71
LEU
71
A
ALA
72
n
72
ALA
72
A
VAL
73
n
73
VAL
73
A
VAL
74
n
74
VAL
74
A
ASN
75
n
75
ASN
75
A
ASP
76
n
76
ASP
76
A
PRO
77
n
77
PRO
77
A
ARG
78
n
78
ARG
78
A
GLY
79
n
79
GLY
79
A
PRO
80
n
80
PRO
80
A
PHE
81
n
81
PHE
81
A
PHE
82
n
82
PHE
82
A
VAL
83
n
83
VAL
83
A
GLY
84
n
84
GLY
84
A
LEU
85
n
85
LEU
85
A
ILE
86
n
86
ILE
86
A
ALA
87
n
87
ALA
87
A
CYS
88
n
88
CYS
88
A
VAL
89
n
89
VAL
89
A
GLN
90
n
90
GLN
90
A
LEU
91
n
91
LEU
91
A
GLU
92
n
92
GLU
92
A
ARG
93
n
93
ARG
93
A
VAL
94
n
94
VAL
94
A
LEU
95
n
95
LEU
95
A
GLU
96
n
96
GLU
96
A
THR
97
n
97
THR
97
A
ALA
98
n
98
ALA
98
A
ALA
99
n
99
ALA
99
A
SER
100
n
100
SER
100
A
ALA
101
n
101
ALA
101
A
ALA
102
n
102
ALA
102
A
ILE
103
n
103
ILE
103
A
n
104
104
A
n
105
105
A
n
106
106
A
n
107
107
A
n
108
108
A
n
109
109
A
n
110
110
A
LEU
111
n
111
LEU
111
A
SER
112
n
112
SER
112
A
ARG
113
n
113
ARG
113
A
GLU
114
n
114
GLU
114
A
GLU
115
n
115
GLU
115
A
ARG
116
n
116
ARG
116
A
LEU
117
n
117
LEU
117
A
LEU
118
n
118
LEU
118
A
TYR
119
n
119
TYR
119
A
LEU
120
n
120
LEU
120
A
ILE
121
n
121
ILE
121
A
THR
122
n
122
THR
122
A
ASN
123
n
123
ASN
123
A
TYR
124
n
124
TYR
124
A
LEU
125
n
125
LEU
125
A
PRO
126
n
126
PRO
126
A
SER
127
n
127
SER
127
A
VAL
128
n
128
VAL
128
A
SER
129
n
129
SER
129
A
LEU
130
n
130
LEU
130
A
SER
131
n
131
SER
131
A
THR
132
n
132
THR
132
A
LYS
133
n
133
LYS
133
A
n
134
134
A
n
135
135
A
n
136
136
A
n
137
137
A
n
138
138
A
n
139
139
A
n
140
140
A
PRO
141
n
141
PRO
141
A
ASP
142
n
142
ASP
142
A
ARG
143
n
143
ARG
143
A
THR
144
n
144
THR
144
A
LEU
145
n
145
LEU
145
A
PHE
146
n
146
PHE
146
A
ALA
147
n
147
ALA
147
A
HIS
148
n
148
HIS
148
A
VAL
149
n
149
VAL
149
A
ALA
150
n
150
ALA
150
A
LEU
151
n
151
LEU
151
A
CYS
152
n
152
CYS
152
A
ALA
153
n
153
ALA
153
A
ILE
154
n
154
ILE
154
A
GLY
155
n
155
GLY
155
A
ARG
156
n
156
ARG
156
A
ARG
157
n
157
ARG
157
A
LEU
158
n
158
LEU
158
A
GLY
159
n
159
GLY
159
A
THR
160
n
160
THR
160
A
ILE
161
n
161
ILE
161
A
VAL
162
n
162
VAL
162
A
THR
163
n
163
THR
163
A
TYR
164
n
164
TYR
164
A
ASP
165
n
165
ASP
165
A
THR
166
n
166
THR
166
A
SER
167
n
167
SER
167
A
LEU
168
n
168
LEU
168
A
ASP
169
n
169
ASP
169
A
ALA
170
n
170
ALA
170
A
ALA
171
n
171
ALA
171
A
ILE
172
n
172
ILE
172
A
ALA
173
n
173
ALA
173
A
PRO
174
n
174
PRO
174
A
PHE
175
n
175
PHE
175
A
ARG
176
n
176
ARG
176
A
HIS
177
n
177
HIS
177
A
LEU
178
n
178
LEU
178
A
ASP
179
n
179
ASP
179
A
PRO
180
n
180
PRO
180
A
ALA
181
n
181
ALA
181
A
THR
182
n
182
THR
182
A
ARG
183
n
183
ARG
183
A
GLU
184
n
184
GLU
184
A
GLY
185
n
185
GLY
185
A
VAL
186
n
186
VAL
186
A
ARG
187
n
187
ARG
187
A
ARG
188
n
188
ARG
188
A
GLU
189
n
189
GLU
189
A
ALA
190
n
190
ALA
190
A
ALA
191
n
191
ALA
191
A
GLU
192
n
192
GLU
192
A
ALA
193
n
193
ALA
193
A
GLU
194
n
194
GLU
194
A
LEU
195
n
195
LEU
195
A
ALA
196
n
196
ALA
196
A
LEU
197
n
197
LEU
197
A
ALA
198
n
198
ALA
198
A
GLY
199
n
199
GLY
199
A
ARG
200
n
200
ARG
200
A
THR
201
n
201
THR
201
A
TRP
202
n
202
TRP
202
A
ALA
203
n
203
ALA
203
A
PRO
204
n
204
PRO
204
A
GLY
205
n
205
GLY
205
A
VAL
206
n
206
VAL
206
A
GLU
207
n
207
GLU
207
A
ALA
208
n
208
ALA
208
A
LEU
209
n
209
LEU
209
A
THR
210
n
210
THR
210
A
HIS
211
n
211
HIS
211
A
THR
212
n
212
THR
212
A
LEU
213
n
213
LEU
213
A
LEU
214
n
214
LEU
214
A
SER
215
n
215
SER
215
A
THR
216
n
216
THR
216
A
ALA
217
n
217
ALA
217
A
VAL
218
n
218
VAL
218
A
ASN
219
n
219
ASN
219
A
ASN
220
n
220
ASN
220
A
MET
221
n
221
MET
221
A
MET
222
n
222
MET
222
A
LEU
223
n
223
LEU
223
A
ARG
224
n
224
ARG
224
A
ASP
225
n
225
ASP
225
A
ARG
226
n
226
ARG
226
A
TRP
227
n
227
TRP
227
A
SER
228
n
228
SER
228
A
LEU
229
n
229
LEU
229
A
VAL
230
n
230
VAL
230
A
ALA
231
n
231
ALA
231
A
GLU
232
n
232
GLU
232
A
ARG
233
n
233
ARG
233
A
ARG
234
n
234
ARG
234
A
ARG
235
n
235
ARG
235
A
GLN
236
n
236
GLN
236
A
ALA
237
n
237
ALA
237
A
GLY
238
n
238
GLY
238
A
ILE
239
n
239
ILE
239
A
ALA
240
n
240
ALA
240
A
GLY
241
n
241
GLY
241
A
HIS
242
n
242
HIS
242
A
THR
243
n
243
THR
243
A
TYR
244
n
244
TYR
244
A
LEU
245
n
245
LEU
245
A
GLN
246
n
246
GLN
246
A
ALA
247
n
247
ALA
247
A
n
1
1
B
n
2
2
B
n
3
3
B
n
4
4
B
n
5
5
B
n
6
6
B
n
7
7
B
n
8
8
B
n
9
9
B
n
10
10
B
n
11
11
B
n
12
12
B
n
13
13
B
n
14
14
B
n
15
15
B
n
16
16
B
ARG
17
n
17
ARG
17
B
ALA
18
n
18
ALA
18
B
VAL
19
n
19
VAL
19
B
PRO
20
n
20
PRO
20
B
ILE
21
n
21
ILE
21
B
TYR
22
n
22
TYR
22
B
VAL
23
n
23
VAL
23
B
ALA
24
n
24
ALA
24
B
GLY
25
n
25
GLY
25
B
PHE
26
n
26
PHE
26
B
LEU
27
n
27
LEU
27
B
ALA
28
n
28
ALA
28
B
LEU
29
n
29
LEU
29
B
TYR
30
n
30
TYR
30
B
ASP
31
n
31
ASP
31
B
SER
32
n
32
SER
32
B
GLY
33
n
33
GLY
33
B
ASP
34
n
34
ASP
34
B
PRO
35
n
35
PRO
35
B
GLY
36
n
36
GLY
36
B
GLU
37
n
37
GLU
37
B
LEU
38
n
38
LEU
38
B
ALA
39
n
39
ALA
39
B
LEU
40
n
40
LEU
40
B
ASP
41
n
41
ASP
41
B
PRO
42
n
42
PRO
42
B
ASP
43
n
43
ASP
43
B
THR
44
n
44
THR
44
B
VAL
45
n
45
VAL
45
B
ARG
46
n
46
ARG
46
B
ALA
47
n
47
ALA
47
B
ALA
48
n
48
ALA
48
B
LEU
49
n
49
LEU
49
B
PRO
50
n
50
PRO
50
B
PRO
51
n
51
PRO
51
B
GLU
52
n
52
GLU
52
B
ASN
53
n
53
ASN
53
B
PRO
54
n
54
PRO
54
B
LEU
55
n
55
LEU
55
B
PRO
56
n
56
PRO
56
B
ILE
57
n
57
ILE
57
B
ASN
58
n
58
ASN
58
B
VAL
59
n
59
VAL
59
B
ASP
60
n
60
ASP
60
B
HIS
61
n
61
HIS
61
B
ARG
62
n
62
ARG
62
B
ALA
63
n
63
ALA
63
B
ARG
64
n
64
ARG
64
B
CYS
65
n
65
CYS
65
B
GLU
66
n
66
GLU
66
B
VAL
67
n
67
VAL
67
B
GLY
68
n
68
GLY
68
B
ARG
69
n
69
ARG
69
B
VAL
70
n
70
VAL
70
B
LEU
71
n
71
LEU
71
B
ALA
72
n
72
ALA
72
B
VAL
73
n
73
VAL
73
B
VAL
74
n
74
VAL
74
B
ASN
75
n
75
ASN
75
B
ASP
76
n
76
ASP
76
B
PRO
77
n
77
PRO
77
B
ARG
78
n
78
ARG
78
B
GLY
79
n
79
GLY
79
B
PRO
80
n
80
PRO
80
B
PHE
81
n
81
PHE
81
B
PHE
82
n
82
PHE
82
B
VAL
83
n
83
VAL
83
B
GLY
84
n
84
GLY
84
B
LEU
85
n
85
LEU
85
B
ILE
86
n
86
ILE
86
B
ALA
87
n
87
ALA
87
B
CYS
88
n
88
CYS
88
B
VAL
89
n
89
VAL
89
B
GLN
90
n
90
GLN
90
B
LEU
91
n
91
LEU
91
B
GLU
92
n
92
GLU
92
B
ARG
93
n
93
ARG
93
B
VAL
94
n
94
VAL
94
B
LEU
95
n
95
LEU
95
B
GLU
96
n
96
GLU
96
B
THR
97
n
97
THR
97
B
ALA
98
n
98
ALA
98
B
ALA
99
n
99
ALA
99
B
SER
100
n
100
SER
100
B
ALA
101
n
101
ALA
101
B
ALA
102
n
102
ALA
102
B
ILE
103
n
103
ILE
103
B
n
104
104
B
n
105
105
B
n
106
106
B
n
107
107
B
n
108
108
B
n
109
109
B
n
110
110
B
LEU
111
n
111
LEU
111
B
SER
112
n
112
SER
112
B
ARG
113
n
113
ARG
113
B
GLU
114
n
114
GLU
114
B
GLU
115
n
115
GLU
115
B
ARG
116
n
116
ARG
116
B
LEU
117
n
117
LEU
117
B
LEU
118
n
118
LEU
118
B
TYR
119
n
119
TYR
119
B
LEU
120
n
120
LEU
120
B
ILE
121
n
121
ILE
121
B
THR
122
n
122
THR
122
B
ASN
123
n
123
ASN
123
B
TYR
124
n
124
TYR
124
B
LEU
125
n
125
LEU
125
B
PRO
126
n
126
PRO
126
B
SER
127
n
127
SER
127
B
VAL
128
n
128
VAL
128
B
SER
129
n
129
SER
129
B
LEU
130
n
130
LEU
130
B
SER
131
n
131
SER
131
B
THR
132
n
132
THR
132
B
LYS
133
n
133
LYS
133
B
n
134
134
B
n
135
135
B
n
136
136
B
n
137
137
B
n
138
138
B
n
139
139
B
n
140
140
B
PRO
141
n
141
PRO
141
B
ASP
142
n
142
ASP
142
B
ARG
143
n
143
ARG
143
B
THR
144
n
144
THR
144
B
LEU
145
n
145
LEU
145
B
PHE
146
n
146
PHE
146
B
ALA
147
n
147
ALA
147
B
HIS
148
n
148
HIS
148
B
VAL
149
n
149
VAL
149
B
ALA
150
n
150
ALA
150
B
LEU
151
n
151
LEU
151
B
CYS
152
n
152
CYS
152
B
ALA
153
n
153
ALA
153
B
ILE
154
n
154
ILE
154
B
GLY
155
n
155
GLY
155
B
ARG
156
n
156
ARG
156
B
ARG
157
n
157
ARG
157
B
LEU
158
n
158
LEU
158
B
GLY
159
n
159
GLY
159
B
THR
160
n
160
THR
160
B
ILE
161
n
161
ILE
161
B
VAL
162
n
162
VAL
162
B
THR
163
n
163
THR
163
B
TYR
164
n
164
TYR
164
B
ASP
165
n
165
ASP
165
B
THR
166
n
166
THR
166
B
SER
167
n
167
SER
167
B
LEU
168
n
168
LEU
168
B
ASP
169
n
169
ASP
169
B
ALA
170
n
170
ALA
170
B
ALA
171
n
171
ALA
171
B
ILE
172
n
172
ILE
172
B
ALA
173
n
173
ALA
173
B
PRO
174
n
174
PRO
174
B
PHE
175
n
175
PHE
175
B
ARG
176
n
176
ARG
176
B
HIS
177
n
177
HIS
177
B
LEU
178
n
178
LEU
178
B
ASP
179
n
179
ASP
179
B
PRO
180
n
180
PRO
180
B
ALA
181
n
181
ALA
181
B
THR
182
n
182
THR
182
B
ARG
183
n
183
ARG
183
B
GLU
184
n
184
GLU
184
B
GLY
185
n
185
GLY
185
B
VAL
186
n
186
VAL
186
B
ARG
187
n
187
ARG
187
B
ARG
188
n
188
ARG
188
B
GLU
189
n
189
GLU
189
B
ALA
190
n
190
ALA
190
B
ALA
191
n
191
ALA
191
B
GLU
192
n
192
GLU
192
B
ALA
193
n
193
ALA
193
B
GLU
194
n
194
GLU
194
B
LEU
195
n
195
LEU
195
B
ALA
196
n
196
ALA
196
B
LEU
197
n
197
LEU
197
B
ALA
198
n
198
ALA
198
B
GLY
199
n
199
GLY
199
B
ARG
200
n
200
ARG
200
B
THR
201
n
201
THR
201
B
TRP
202
n
202
TRP
202
B
ALA
203
n
203
ALA
203
B
PRO
204
n
204
PRO
204
B
GLY
205
n
205
GLY
205
B
VAL
206
n
206
VAL
206
B
GLU
207
n
207
GLU
207
B
ALA
208
n
208
ALA
208
B
LEU
209
n
209
LEU
209
B
THR
210
n
210
THR
210
B
HIS
211
n
211
HIS
211
B
THR
212
n
212
THR
212
B
LEU
213
n
213
LEU
213
B
LEU
214
n
214
LEU
214
B
SER
215
n
215
SER
215
B
THR
216
n
216
THR
216
B
ALA
217
n
217
ALA
217
B
VAL
218
n
218
VAL
218
B
ASN
219
n
219
ASN
219
B
ASN
220
n
220
ASN
220
B
MET
221
n
221
MET
221
B
MET
222
n
222
MET
222
B
LEU
223
n
223
LEU
223
B
ARG
224
n
224
ARG
224
B
ASP
225
n
225
ASP
225
B
ARG
226
n
226
ARG
226
B
TRP
227
n
227
TRP
227
B
SER
228
n
228
SER
228
B
LEU
229
n
229
LEU
229
B
VAL
230
n
230
VAL
230
B
ALA
231
n
231
ALA
231
B
GLU
232
n
232
GLU
232
B
ARG
233
n
233
ARG
233
B
ARG
234
n
234
ARG
234
B
ARG
235
n
235
ARG
235
B
GLN
236
n
236
GLN
236
B
ALA
237
n
237
ALA
237
B
GLY
238
n
238
GLY
238
B
ILE
239
n
239
ILE
239
B
ALA
240
n
240
ALA
240
B
GLY
241
n
241
GLY
241
B
HIS
242
n
242
HIS
242
B
THR
243
n
243
THR
243
B
TYR
244
n
244
TYR
244
B
LEU
245
n
245
LEU
245
B
GLN
246
n
246
GLN
246
B
ALA
247
n
247
ALA
247
B
author_and_software_defined_assembly
PQS
4
tetrameric
software_defined_assembly
PISA
2
dimeric
3300
-11
18070
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-x+1,-y+1,z
crystal symmetry operation
71.7200000000
87.4300000000
0.0000000000
A
O
THR
163
A
O
THR
163
A
N
ALA
24
A
N
ALA
24
A
O
ILE
21
A
O
ILE
21
A
N
ILE
86
A
N
ILE
86
A
O
GLY
79
A
O
GLY
79
A
N
ASP
76
A
N
ASP
76
A
O
VAL
67
A
O
VAL
67
A
N
ILE
57
A
N
ILE
57
A
O
ASN
58
A
O
ASN
58
A
N
VAL
149
A
N
VAL
149
A
O
ALA
147
A
O
ALA
147
A
N
SER
131
A
N
SER
131
B
O
THR
163
B
O
THR
163
B
N
ALA
24
B
N
ALA
24
B
O
ILE
21
B
O
ILE
21
B
N
ILE
86
B
N
ILE
86
B
O
GLY
79
B
O
GLY
79
B
N
ASP
76
B
N
ASP
76
B
O
VAL
67
B
O
VAL
67
B
N
ILE
57
B
N
ILE
57
B
O
PRO
56
B
O
PRO
56
B
N
VAL
149
B
N
VAL
149
B
O
ALA
147
B
O
ALA
147
B
N
SER
131
B
N
SER
131
1
A
CG
ARG
17
A
CG
ARG
17
1
Y
1
A
CD
ARG
17
A
CD
ARG
17
1
Y
1
A
NE
ARG
17
A
NE
ARG
17
1
Y
1
A
CZ
ARG
17
A
CZ
ARG
17
1
Y
1
A
NH1
ARG
17
A
NH1
ARG
17
1
Y
1
A
NH2
ARG
17
A
NH2
ARG
17
1
Y
1
A
CG1
ILE
103
A
CG1
ILE
103
1
Y
1
A
CG2
ILE
103
A
CG2
ILE
103
1
Y
1
A
CD1
ILE
103
A
CD1
ILE
103
1
Y
1
A
CG
LYS
133
A
CG
LYS
133
1
Y
1
A
CD
LYS
133
A
CD
LYS
133
1
Y
1
A
CE
LYS
133
A
CE
LYS
133
1
Y
1
A
NZ
LYS
133
A
NZ
LYS
133
1
Y
1
A
CG
PRO
141
A
CG
PRO
141
1
Y
1
A
CD
PRO
141
A
CD
PRO
141
1
Y
1
B
CG
ARG
17
B
CG
ARG
17
1
Y
1
B
CD
ARG
17
B
CD
ARG
17
1
Y
1
B
NE
ARG
17
B
NE
ARG
17
1
Y
1
B
CZ
ARG
17
B
CZ
ARG
17
1
Y
1
B
NH1
ARG
17
B
NH1
ARG
17
1
Y
1
B
NH2
ARG
17
B
NH2
ARG
17
1
Y
1
B
CG1
ILE
103
B
CG1
ILE
103
1
Y
1
B
CG2
ILE
103
B
CG2
ILE
103
1
Y
1
B
CD1
ILE
103
B
CD1
ILE
103
1
Y
1
B
CG
LEU
111
B
CG
LEU
111
1
Y
1
B
CD1
LEU
111
B
CD1
LEU
111
1
Y
1
B
CD2
LEU
111
B
CD2
LEU
111
1
Y
1
B
CG
LYS
133
B
CG
LYS
133
1
Y
1
B
CD
LYS
133
B
CD
LYS
133
1
Y
1
B
CE
LYS
133
B
CE
LYS
133
1
Y
1
B
NZ
LYS
133
B
NZ
LYS
133
1
Y
1
B
CG
PRO
141
B
CG
PRO
141
1
Y
1
B
CD
PRO
141
B
CD
PRO
141
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
SER
3
A
SER
3
1
Y
1
A
ALA
4
A
ALA
4
1
Y
1
A
GLU
5
A
GLU
5
1
Y
1
A
MET
6
A
MET
6
1
Y
1
A
ARG
7
A
ARG
7
1
Y
1
A
GLU
8
A
GLU
8
1
Y
1
A
ARG
9
A
ARG
9
1
Y
1
A
LEU
10
A
LEU
10
1
Y
1
A
GLU
11
A
GLU
11
1
Y
1
A
ALA
12
A
ALA
12
1
Y
1
A
PRO
13
A
PRO
13
1
Y
1
A
LEU
14
A
LEU
14
1
Y
1
A
PRO
15
A
PRO
15
1
Y
1
A
ASP
16
A
ASP
16
1
Y
1
A
PHE
104
A
PHE
104
1
Y
1
A
GLU
105
A
GLU
105
1
Y
1
A
ARG
106
A
ARG
106
1
Y
1
A
ARG
107
A
ARG
107
1
Y
1
A
GLY
108
A
GLY
108
1
Y
1
A
PRO
109
A
PRO
109
1
Y
1
A
ALA
110
A
ALA
110
1
Y
1
A
ARG
134
A
ARG
134
1
Y
1
A
ARG
135
A
ARG
135
1
Y
1
A
GLY
136
A
GLY
136
1
Y
1
A
ASP
137
A
ASP
137
1
Y
1
A
GLU
138
A
GLU
138
1
Y
1
A
VAL
139
A
VAL
139
1
Y
1
A
PRO
140
A
PRO
140
1
Y
1
B
MET
1
B
MET
1
1
Y
1
B
ALA
2
B
ALA
2
1
Y
1
B
SER
3
B
SER
3
1
Y
1
B
ALA
4
B
ALA
4
1
Y
1
B
GLU
5
B
GLU
5
1
Y
1
B
MET
6
B
MET
6
1
Y
1
B
ARG
7
B
ARG
7
1
Y
1
B
GLU
8
B
GLU
8
1
Y
1
B
ARG
9
B
ARG
9
1
Y
1
B
LEU
10
B
LEU
10
1
Y
1
B
GLU
11
B
GLU
11
1
Y
1
B
ALA
12
B
ALA
12
1
Y
1
B
PRO
13
B
PRO
13
1
Y
1
B
LEU
14
B
LEU
14
1
Y
1
B
PRO
15
B
PRO
15
1
Y
1
B
ASP
16
B
ASP
16
1
Y
1
B
PHE
104
B
PHE
104
1
Y
1
B
GLU
105
B
GLU
105
1
Y
1
B
ARG
106
B
ARG
106
1
Y
1
B
ARG
107
B
ARG
107
1
Y
1
B
GLY
108
B
GLY
108
1
Y
1
B
PRO
109
B
PRO
109
1
Y
1
B
ALA
110
B
ALA
110
1
Y
1
B
ARG
134
B
ARG
134
1
Y
1
B
ARG
135
B
ARG
135
1
Y
1
B
GLY
136
B
GLY
136
1
Y
1
B
ASP
137
B
ASP
137
1
Y
1
B
GLU
138
B
GLU
138
1
Y
1
B
VAL
139
B
VAL
139
1
Y
1
B
PRO
140
B
PRO
140
1
Y
1
A
ARG
157
0.132
SIDE CHAIN
1
6.16
0.50
120.30
126.46
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
157
157
157
N
1
-5.30
0.50
120.30
115.00
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
157
157
157
N
1
A
A
CB
SG
CYS
CYS
65
65
-0.127
0.016
1.812
1.685
N
1
A
PRO
35
-52.73
171.46
1
A
HIS
61
46.38
-0.41
1
A
ARG
62
-69.20
93.42
1
A
ALA
99
-66.18
97.70
1
A
SER
100
-90.38
55.37
1
A
ALA
102
-97.31
-64.54
1
A
SER
112
-141.90
-75.55
1
A
ARG
113
-167.96
-101.59
1
A
LEU
125
-119.24
69.15
1
A
ARG
143
-56.70
-8.50
1
A
HIS
177
-100.09
62.09
1
A
ALA
196
-65.19
-75.60
1
A
LEU
197
-71.16
30.93
1
A
ALA
203
-154.92
75.10
1
A
ASP
225
44.77
84.82
1
A
GLN
246
-83.72
36.53
1
B
ALA
28
-176.73
149.66
1
B
PRO
35
-49.83
169.41
1
B
ASP
60
38.89
55.02
1
B
HIS
61
53.16
-2.61
1
B
SER
100
-90.21
52.31
1
B
SER
112
-128.38
-52.62
1
B
ARG
113
-169.87
-100.28
1
B
ARG
143
-56.27
-7.66
1
B
HIS
177
-91.20
58.75
1
B
ALA
196
-63.29
-75.03
1
B
LEU
197
-71.97
30.91
1
B
ASP
225
67.55
-49.24
1
B
ARG
226
59.38
-50.73
1
B
GLN
246
-77.88
42.40
PAHCSDX.PRO
TOPHCSDX.PRO
21.3
0
0
0
0
0
0
0.2910000
0.008
0.2050000
0.2050000
2.5
10
1475
14605
10.1
85.6
RANDOM
10000000.00
0.00100
1
RESTRAINED
THROUGHOUT
2
MR, MIR
1VZV
0.40
0.27
5.00
0.40
0.27
2.5
10
43
3356
20
0
3293
0.015
1.9
24.7
1.49
3.11
1.50
4.90
2.00
4.79
2.00
7.34
2.50
1
RESTRAINED
1
X-RAY DIFFRACTION
0.227
2
50
2
2
X-RAY DIFFRACTION
0
0
3
3
X-RAY DIFFRACTION
0
0
4
4
X-RAY DIFFRACTION
0
0
0.2680000
0.024
0.2280000
2.61
124
1064
8
10.4
57.2
37.4
2.5
25.
1AT3
78502
2
0.0950000
0.0950000
1
12
5.0
91
0.2400000
2.50
2.61
3
0.2400000
1
2.2
88
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
data reduction
XDS
data scaling
XDS
phasing
X-PLOR
3.1
HERPES SIMPLEX VIRUS TYPE II PROTEASE
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
PRO
42
A
PRO
42
HELX_P
A
ALA
48
A
ALA
48
1
1
7
A
VAL
89
A
VAL
89
HELX_P
A
ALA
98
A
ALA
98
1
2
10
A
GLU
114
A
GLU
114
HELX_P
A
TYR
124
A
TYR
124
1
3
11
A
LEU
168
A
LEU
168
HELX_P
A
ILE
172
A
ILE
172
1
4
5
A
PRO
180
A
PRO
180
HELX_P
A
ALA
196
A
ALA
196
1
5
17
A
VAL
206
A
VAL
206
HELX_P
A
ASN
220
A
ASN
220
1
6
15
A
ARG
226
A
ARG
226
HELX_P
A
GLN
236
A
GLN
236
1
7
11
B
PRO
42
B
PRO
42
HELX_P
B
ALA
48
B
ALA
48
1
8
7
B
VAL
89
B
VAL
89
HELX_P
B
ALA
98
B
ALA
98
1
9
10
B
GLU
114
B
GLU
114
HELX_P
B
TYR
124
B
TYR
124
1
10
11
B
LEU
168
B
LEU
168
HELX_P
B
ALA
173
B
ALA
173
1
11
6
B
PRO
180
B
PRO
180
HELX_P
B
ALA
196
B
ALA
196
1
12
17
B
VAL
206
B
VAL
206
HELX_P
B
ASN
219
B
ASN
219
1
13
14
B
TRP
227
B
TRP
227
HELX_P
B
ALA
237
B
ALA
237
1
14
11
covale
1.584
one
A
SER
129
A
OG
SER
129
1_555
A
DFP
300
C
P
DFP
1_555
covale
1.629
one
B
SER
129
B
OG
SER
129
1_555
B
DFP
300
D
P
DFP
1_555
SERINE PROTEASE
SERINE PROTEASE, VIRAL PROTEASE, HSV2 PROTEASE
A
LEU
49
A
LEU
49
1
A
PRO
50
A
PRO
50
-0.49
B
LEU
49
B
LEU
49
1
B
PRO
50
B
PRO
50
-0.42
given
0.931609
0.050040
0.360000
0.064230
-0.997555
-0.027556
0.357741
0.048794
-0.932545
-8.01720
46.20170
34.65840
Q69527_HHV2
UNP
1
1
Q69527
MASAEMRERLEAPLPDRAVPIYVAGFLALYDSGDPGELALDPDTVRAALPPENPLPINVDHRARCEVGRVLAVVNDPRGP
FFVGLIACVQLERVLETAASAAIFERRGPALSREERLLYLITNYLPSVSLSTKRRGDEVPPDRTLFAHVALCAIGRRLGT
IVTYDTSLDAAIAPFRHLDPATREGVRREAAEAELALAGRTWAPGVEALTHTLLSTAVNNMMLRDRWSLVAERRRQAGIA
GHTYLQASEKFKIWGAESAPAPERGYKTGAPGAMDTSPAASVPAPQVAVRARQVASSSSSSSSFPAPADMNPVSASGAPA
PPPPGDGSYLWIPASHYNQLVTGQSAPRHPPLTACGLPAAGTVAYGHPGAGPSPHYPPPPAHPYPGMLFAGPSPLEAQIA
ALVGAIAADRQAGGLPAAAGDHGIRGSAKRRRHEVEQPEYDCGRDEPDRDFPYYPGEARPEPRPVDSRRAARQASGPHET
ITALVGAVTSLQQELAHMRARTHAPYGPYPPVGPYHHPHADTETPAQPPRYPAEAVYLPPPHIAPPGPPLSGAVPPPSYP
PVAVTPGPAPPLHQPSPAHAHPPPPPPGPTPPPAASLPQPEAPGAEAGALVNASSAAHVNVDTARAADLFVSQMMGSR
1
247
1AT3
1
247
Q69527
A
1
1
247
1
247
1AT3
1
247
Q69527
B
1
1
247
7
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
A
THR
163
A
THR
163
A
ASP
165
A
ASP
165
A
ILE
21
A
ILE
21
A
PHE
26
A
PHE
26
A
GLY
79
A
GLY
79
A
ILE
86
A
ILE
86
A
GLU
66
A
GLU
66
A
ASP
76
A
ASP
76
A
LEU
55
A
LEU
55
A
VAL
59
A
VAL
59
A
PHE
146
A
PHE
146
A
CYS
152
A
CYS
152
A
SER
127
A
SER
127
A
THR
132
A
THR
132
B
VAL
162
B
VAL
162
B
ASP
165
B
ASP
165
B
ILE
21
B
ILE
21
B
PHE
26
B
PHE
26
B
GLY
79
B
GLY
79
B
ILE
86
B
ILE
86
B
GLU
66
B
GLU
66
B
ASP
76
B
ASP
76
B
LEU
55
B
LEU
55
B
VAL
59
B
VAL
59
B
PHE
146
B
PHE
146
B
CYS
152
B
CYS
152
B
SER
127
B
SER
127
B
THR
132
B
THR
132
NOVEL ACTIVE SITE TRIAD SER 129, HIS 61 AND HIS 148.
Unknown
3
BINDING SITE FOR RESIDUE DFP A 300
A
DFP
300
Software
5
BINDING SITE FOR RESIDUE DFP B 300
B
DFP
300
Software
6
A
SER
129
A
SER
129
3
1_555
A
HIS
61
A
HIS
61
3
1_555
A
HIS
148
A
HIS
148
3
1_555
A
LEU
38
A
LEU
38
5
1_555
A
SER
129
A
SER
129
5
1_555
A
LEU
130
A
LEU
130
5
1_555
A
ARG
156
A
ARG
156
5
1_555
A
HOH
303
E
HOH
5
1_555
B
LEU
38
B
LEU
38
6
1_555
B
HIS
61
B
HIS
61
6
1_555
B
SER
129
B
SER
129
6
1_555
B
LEU
130
B
LEU
130
6
1_555
B
ARG
156
B
ARG
156
6
1_555
B
HOH
330
F
HOH
6
1_555
18
P 21 21 2