0.013943 0.000000 0.000000 0.000000 0.011438 0.000000 0.000000 0.000000 0.012940 0.00000 0.00000 0.00000 Hoog, S. Smith, W.W. Qiu, X. Abdel-Meguid, S.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 71.720 87.430 77.280 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H15 O3 P 166.155 DIISOPROPYL PHOSPHONATE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 36 14023 14029 10.1021/bi9712697 9369473 Active site cavity of herpesvirus proteases revealed by the crystal structure of herpes simplex virus protease/inhibitor complex. 1997 10.2210/pdb1at3/pdb pdb_00001at3 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293 1 COLLIMATOR AREA DETECTOR 1996-05 SIEMENS GRAPHITE(002) M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE SIEMENS DIISOPROPYL PHOSPHATE COVALENTLY BOUND TO ACTIVE SITE SER 129 27055.979 HERPES SIMPLEX VIRUS TYPE II PROTEASE 2 man polymer 166.155 DIISOPROPYL PHOSPHONATE 2 syn non-polymer 18.015 water 43 nat water no no MASAEMRERLEAPLPDRAVPIYVAGFLALYDSGDPGELALDPDTVRAALPPENPLPINVDHRARCEVGRVLAVVNDPRGP FFVGLIACVQLERVLETAASAAIFERRGPALSREERLLYLITNYLPSVSLSTKRRGDEVPPDRTLFAHVALCAIGRRLGT IVTYDTSLDAAIAPFRHLDPATREGVRREAAEAELALAGRTWAPGVEALTHTLLSTAVNNMMLRDRWSLVAERRRQAGIA GHTYLQA MASAEMRERLEAPLPDRAVPIYVAGFLALYDSGDPGELALDPDTVRAALPPENPLPINVDHRARCEVGRVLAVVNDPRGP FFVGLIACVQLERVLETAASAAIFERRGPALSREERLLYLITNYLPSVSLSTKRRGDEVPPDRTLFAHVALCAIGRRLGT IVTYDTSLDAAIAPFRHLDPATREGVRREAAEAELALAGRTWAPGVEALTHTLLSTAVNNMMLRDRWSLVAERRRQAGIA GHTYLQA A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Herpes simplex virus type 2 Simplexvirus Escherichia sample 10310 Human herpesvirus 2 562 Escherichia coli 1 2.57 52 5.0 10% PEG4000, PH 5.0 diffrn_source pdbx_database_status database_2 pdbx_initial_refinement_model struct_conn struct_site repository Initial release Version format compliance Derived calculations Version format compliance Data collection Other Database references Derived calculations Refinement description 1 0 1998-10-14 1 1 2008-03-24 1 2 2011-07-13 1 3 2018-03-07 1 4 2023-08-02 _diffrn_source.source _pdbx_database_status.process_site _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1997-08-16 REL DFP DIISOPROPYL PHOSPHONATE HOH water 1VZV PDB experimental model DFP 300 2 DFP DFP 300 A DFP 300 2 DFP DFP 300 B HOH 301 3 HOH HOH 301 A HOH 302 3 HOH HOH 302 A HOH 303 3 HOH HOH 303 A HOH 304 3 HOH HOH 304 A HOH 305 3 HOH HOH 305 A HOH 306 3 HOH HOH 306 A HOH 307 3 HOH HOH 307 A HOH 308 3 HOH HOH 308 A HOH 309 3 HOH HOH 309 A HOH 310 3 HOH HOH 310 A HOH 313 3 HOH HOH 313 A HOH 316 3 HOH HOH 316 A HOH 317 3 HOH HOH 317 A HOH 318 3 HOH HOH 318 A HOH 319 3 HOH HOH 319 A HOH 320 3 HOH HOH 320 A HOH 321 3 HOH HOH 321 A HOH 324 3 HOH HOH 324 A HOH 325 3 HOH HOH 325 A HOH 326 3 HOH HOH 326 A HOH 327 3 HOH HOH 327 A HOH 332 3 HOH HOH 332 A HOH 335 3 HOH HOH 335 A HOH 336 3 HOH HOH 336 A HOH 338 3 HOH HOH 338 A HOH 340 3 HOH HOH 340 A HOH 341 3 HOH HOH 341 A HOH 342 3 HOH HOH 342 A HOH 311 3 HOH HOH 311 B HOH 312 3 HOH HOH 312 B HOH 314 3 HOH HOH 314 B HOH 315 3 HOH HOH 315 B HOH 322 3 HOH HOH 322 B HOH 323 3 HOH HOH 323 B HOH 328 3 HOH HOH 328 B HOH 329 3 HOH HOH 329 B HOH 330 3 HOH HOH 330 B HOH 331 3 HOH HOH 331 B HOH 333 3 HOH HOH 333 B HOH 334 3 HOH HOH 334 B HOH 337 3 HOH HOH 337 B HOH 339 3 HOH HOH 339 B HOH 343 3 HOH HOH 343 B n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A n 9 9 A n 10 10 A n 11 11 A n 12 12 A n 13 13 A n 14 14 A n 15 15 A n 16 16 A ARG 17 n 17 ARG 17 A ALA 18 n 18 ALA 18 A VAL 19 n 19 VAL 19 A PRO 20 n 20 PRO 20 A ILE 21 n 21 ILE 21 A TYR 22 n 22 TYR 22 A VAL 23 n 23 VAL 23 A ALA 24 n 24 ALA 24 A GLY 25 n 25 GLY 25 A PHE 26 n 26 PHE 26 A LEU 27 n 27 LEU 27 A ALA 28 n 28 ALA 28 A LEU 29 n 29 LEU 29 A TYR 30 n 30 TYR 30 A ASP 31 n 31 ASP 31 A SER 32 n 32 SER 32 A GLY 33 n 33 GLY 33 A ASP 34 n 34 ASP 34 A PRO 35 n 35 PRO 35 A GLY 36 n 36 GLY 36 A GLU 37 n 37 GLU 37 A LEU 38 n 38 LEU 38 A ALA 39 n 39 ALA 39 A LEU 40 n 40 LEU 40 A ASP 41 n 41 ASP 41 A PRO 42 n 42 PRO 42 A ASP 43 n 43 ASP 43 A THR 44 n 44 THR 44 A VAL 45 n 45 VAL 45 A ARG 46 n 46 ARG 46 A ALA 47 n 47 ALA 47 A ALA 48 n 48 ALA 48 A LEU 49 n 49 LEU 49 A PRO 50 n 50 PRO 50 A PRO 51 n 51 PRO 51 A GLU 52 n 52 GLU 52 A ASN 53 n 53 ASN 53 A PRO 54 n 54 PRO 54 A LEU 55 n 55 LEU 55 A PRO 56 n 56 PRO 56 A ILE 57 n 57 ILE 57 A ASN 58 n 58 ASN 58 A VAL 59 n 59 VAL 59 A ASP 60 n 60 ASP 60 A HIS 61 n 61 HIS 61 A ARG 62 n 62 ARG 62 A ALA 63 n 63 ALA 63 A ARG 64 n 64 ARG 64 A CYS 65 n 65 CYS 65 A GLU 66 n 66 GLU 66 A VAL 67 n 67 VAL 67 A GLY 68 n 68 GLY 68 A ARG 69 n 69 ARG 69 A VAL 70 n 70 VAL 70 A LEU 71 n 71 LEU 71 A ALA 72 n 72 ALA 72 A VAL 73 n 73 VAL 73 A VAL 74 n 74 VAL 74 A ASN 75 n 75 ASN 75 A ASP 76 n 76 ASP 76 A PRO 77 n 77 PRO 77 A ARG 78 n 78 ARG 78 A GLY 79 n 79 GLY 79 A PRO 80 n 80 PRO 80 A PHE 81 n 81 PHE 81 A PHE 82 n 82 PHE 82 A VAL 83 n 83 VAL 83 A GLY 84 n 84 GLY 84 A LEU 85 n 85 LEU 85 A ILE 86 n 86 ILE 86 A ALA 87 n 87 ALA 87 A CYS 88 n 88 CYS 88 A VAL 89 n 89 VAL 89 A GLN 90 n 90 GLN 90 A LEU 91 n 91 LEU 91 A GLU 92 n 92 GLU 92 A ARG 93 n 93 ARG 93 A VAL 94 n 94 VAL 94 A LEU 95 n 95 LEU 95 A GLU 96 n 96 GLU 96 A THR 97 n 97 THR 97 A ALA 98 n 98 ALA 98 A ALA 99 n 99 ALA 99 A SER 100 n 100 SER 100 A ALA 101 n 101 ALA 101 A ALA 102 n 102 ALA 102 A ILE 103 n 103 ILE 103 A n 104 104 A n 105 105 A n 106 106 A n 107 107 A n 108 108 A n 109 109 A n 110 110 A LEU 111 n 111 LEU 111 A SER 112 n 112 SER 112 A ARG 113 n 113 ARG 113 A GLU 114 n 114 GLU 114 A GLU 115 n 115 GLU 115 A ARG 116 n 116 ARG 116 A LEU 117 n 117 LEU 117 A LEU 118 n 118 LEU 118 A TYR 119 n 119 TYR 119 A LEU 120 n 120 LEU 120 A ILE 121 n 121 ILE 121 A THR 122 n 122 THR 122 A ASN 123 n 123 ASN 123 A TYR 124 n 124 TYR 124 A LEU 125 n 125 LEU 125 A PRO 126 n 126 PRO 126 A SER 127 n 127 SER 127 A VAL 128 n 128 VAL 128 A SER 129 n 129 SER 129 A LEU 130 n 130 LEU 130 A SER 131 n 131 SER 131 A THR 132 n 132 THR 132 A LYS 133 n 133 LYS 133 A n 134 134 A n 135 135 A n 136 136 A n 137 137 A n 138 138 A n 139 139 A n 140 140 A PRO 141 n 141 PRO 141 A ASP 142 n 142 ASP 142 A ARG 143 n 143 ARG 143 A THR 144 n 144 THR 144 A LEU 145 n 145 LEU 145 A PHE 146 n 146 PHE 146 A ALA 147 n 147 ALA 147 A HIS 148 n 148 HIS 148 A VAL 149 n 149 VAL 149 A ALA 150 n 150 ALA 150 A LEU 151 n 151 LEU 151 A CYS 152 n 152 CYS 152 A ALA 153 n 153 ALA 153 A ILE 154 n 154 ILE 154 A GLY 155 n 155 GLY 155 A ARG 156 n 156 ARG 156 A ARG 157 n 157 ARG 157 A LEU 158 n 158 LEU 158 A GLY 159 n 159 GLY 159 A THR 160 n 160 THR 160 A ILE 161 n 161 ILE 161 A VAL 162 n 162 VAL 162 A THR 163 n 163 THR 163 A TYR 164 n 164 TYR 164 A ASP 165 n 165 ASP 165 A THR 166 n 166 THR 166 A SER 167 n 167 SER 167 A LEU 168 n 168 LEU 168 A ASP 169 n 169 ASP 169 A ALA 170 n 170 ALA 170 A ALA 171 n 171 ALA 171 A ILE 172 n 172 ILE 172 A ALA 173 n 173 ALA 173 A PRO 174 n 174 PRO 174 A PHE 175 n 175 PHE 175 A ARG 176 n 176 ARG 176 A HIS 177 n 177 HIS 177 A LEU 178 n 178 LEU 178 A ASP 179 n 179 ASP 179 A PRO 180 n 180 PRO 180 A ALA 181 n 181 ALA 181 A THR 182 n 182 THR 182 A ARG 183 n 183 ARG 183 A GLU 184 n 184 GLU 184 A GLY 185 n 185 GLY 185 A VAL 186 n 186 VAL 186 A ARG 187 n 187 ARG 187 A ARG 188 n 188 ARG 188 A GLU 189 n 189 GLU 189 A ALA 190 n 190 ALA 190 A ALA 191 n 191 ALA 191 A GLU 192 n 192 GLU 192 A ALA 193 n 193 ALA 193 A GLU 194 n 194 GLU 194 A LEU 195 n 195 LEU 195 A ALA 196 n 196 ALA 196 A LEU 197 n 197 LEU 197 A ALA 198 n 198 ALA 198 A GLY 199 n 199 GLY 199 A ARG 200 n 200 ARG 200 A THR 201 n 201 THR 201 A TRP 202 n 202 TRP 202 A ALA 203 n 203 ALA 203 A PRO 204 n 204 PRO 204 A GLY 205 n 205 GLY 205 A VAL 206 n 206 VAL 206 A GLU 207 n 207 GLU 207 A ALA 208 n 208 ALA 208 A LEU 209 n 209 LEU 209 A THR 210 n 210 THR 210 A HIS 211 n 211 HIS 211 A THR 212 n 212 THR 212 A LEU 213 n 213 LEU 213 A LEU 214 n 214 LEU 214 A SER 215 n 215 SER 215 A THR 216 n 216 THR 216 A ALA 217 n 217 ALA 217 A VAL 218 n 218 VAL 218 A ASN 219 n 219 ASN 219 A ASN 220 n 220 ASN 220 A MET 221 n 221 MET 221 A MET 222 n 222 MET 222 A LEU 223 n 223 LEU 223 A ARG 224 n 224 ARG 224 A ASP 225 n 225 ASP 225 A ARG 226 n 226 ARG 226 A TRP 227 n 227 TRP 227 A SER 228 n 228 SER 228 A LEU 229 n 229 LEU 229 A VAL 230 n 230 VAL 230 A ALA 231 n 231 ALA 231 A GLU 232 n 232 GLU 232 A ARG 233 n 233 ARG 233 A ARG 234 n 234 ARG 234 A ARG 235 n 235 ARG 235 A GLN 236 n 236 GLN 236 A ALA 237 n 237 ALA 237 A GLY 238 n 238 GLY 238 A ILE 239 n 239 ILE 239 A ALA 240 n 240 ALA 240 A GLY 241 n 241 GLY 241 A HIS 242 n 242 HIS 242 A THR 243 n 243 THR 243 A TYR 244 n 244 TYR 244 A LEU 245 n 245 LEU 245 A GLN 246 n 246 GLN 246 A ALA 247 n 247 ALA 247 A n 1 1 B n 2 2 B n 3 3 B n 4 4 B n 5 5 B n 6 6 B n 7 7 B n 8 8 B n 9 9 B n 10 10 B n 11 11 B n 12 12 B n 13 13 B n 14 14 B n 15 15 B n 16 16 B ARG 17 n 17 ARG 17 B ALA 18 n 18 ALA 18 B VAL 19 n 19 VAL 19 B PRO 20 n 20 PRO 20 B ILE 21 n 21 ILE 21 B TYR 22 n 22 TYR 22 B VAL 23 n 23 VAL 23 B ALA 24 n 24 ALA 24 B GLY 25 n 25 GLY 25 B PHE 26 n 26 PHE 26 B LEU 27 n 27 LEU 27 B ALA 28 n 28 ALA 28 B LEU 29 n 29 LEU 29 B TYR 30 n 30 TYR 30 B ASP 31 n 31 ASP 31 B SER 32 n 32 SER 32 B GLY 33 n 33 GLY 33 B ASP 34 n 34 ASP 34 B PRO 35 n 35 PRO 35 B GLY 36 n 36 GLY 36 B GLU 37 n 37 GLU 37 B LEU 38 n 38 LEU 38 B ALA 39 n 39 ALA 39 B LEU 40 n 40 LEU 40 B ASP 41 n 41 ASP 41 B PRO 42 n 42 PRO 42 B ASP 43 n 43 ASP 43 B THR 44 n 44 THR 44 B VAL 45 n 45 VAL 45 B ARG 46 n 46 ARG 46 B ALA 47 n 47 ALA 47 B ALA 48 n 48 ALA 48 B LEU 49 n 49 LEU 49 B PRO 50 n 50 PRO 50 B PRO 51 n 51 PRO 51 B GLU 52 n 52 GLU 52 B ASN 53 n 53 ASN 53 B PRO 54 n 54 PRO 54 B LEU 55 n 55 LEU 55 B PRO 56 n 56 PRO 56 B ILE 57 n 57 ILE 57 B ASN 58 n 58 ASN 58 B VAL 59 n 59 VAL 59 B ASP 60 n 60 ASP 60 B HIS 61 n 61 HIS 61 B ARG 62 n 62 ARG 62 B ALA 63 n 63 ALA 63 B ARG 64 n 64 ARG 64 B CYS 65 n 65 CYS 65 B GLU 66 n 66 GLU 66 B VAL 67 n 67 VAL 67 B GLY 68 n 68 GLY 68 B ARG 69 n 69 ARG 69 B VAL 70 n 70 VAL 70 B LEU 71 n 71 LEU 71 B ALA 72 n 72 ALA 72 B VAL 73 n 73 VAL 73 B VAL 74 n 74 VAL 74 B ASN 75 n 75 ASN 75 B ASP 76 n 76 ASP 76 B PRO 77 n 77 PRO 77 B ARG 78 n 78 ARG 78 B GLY 79 n 79 GLY 79 B PRO 80 n 80 PRO 80 B PHE 81 n 81 PHE 81 B PHE 82 n 82 PHE 82 B VAL 83 n 83 VAL 83 B GLY 84 n 84 GLY 84 B LEU 85 n 85 LEU 85 B ILE 86 n 86 ILE 86 B ALA 87 n 87 ALA 87 B CYS 88 n 88 CYS 88 B VAL 89 n 89 VAL 89 B GLN 90 n 90 GLN 90 B LEU 91 n 91 LEU 91 B GLU 92 n 92 GLU 92 B ARG 93 n 93 ARG 93 B VAL 94 n 94 VAL 94 B LEU 95 n 95 LEU 95 B GLU 96 n 96 GLU 96 B THR 97 n 97 THR 97 B ALA 98 n 98 ALA 98 B ALA 99 n 99 ALA 99 B SER 100 n 100 SER 100 B ALA 101 n 101 ALA 101 B ALA 102 n 102 ALA 102 B ILE 103 n 103 ILE 103 B n 104 104 B n 105 105 B n 106 106 B n 107 107 B n 108 108 B n 109 109 B n 110 110 B LEU 111 n 111 LEU 111 B SER 112 n 112 SER 112 B ARG 113 n 113 ARG 113 B GLU 114 n 114 GLU 114 B GLU 115 n 115 GLU 115 B ARG 116 n 116 ARG 116 B LEU 117 n 117 LEU 117 B LEU 118 n 118 LEU 118 B TYR 119 n 119 TYR 119 B LEU 120 n 120 LEU 120 B ILE 121 n 121 ILE 121 B THR 122 n 122 THR 122 B ASN 123 n 123 ASN 123 B TYR 124 n 124 TYR 124 B LEU 125 n 125 LEU 125 B PRO 126 n 126 PRO 126 B SER 127 n 127 SER 127 B VAL 128 n 128 VAL 128 B SER 129 n 129 SER 129 B LEU 130 n 130 LEU 130 B SER 131 n 131 SER 131 B THR 132 n 132 THR 132 B LYS 133 n 133 LYS 133 B n 134 134 B n 135 135 B n 136 136 B n 137 137 B n 138 138 B n 139 139 B n 140 140 B PRO 141 n 141 PRO 141 B ASP 142 n 142 ASP 142 B ARG 143 n 143 ARG 143 B THR 144 n 144 THR 144 B LEU 145 n 145 LEU 145 B PHE 146 n 146 PHE 146 B ALA 147 n 147 ALA 147 B HIS 148 n 148 HIS 148 B VAL 149 n 149 VAL 149 B ALA 150 n 150 ALA 150 B LEU 151 n 151 LEU 151 B CYS 152 n 152 CYS 152 B ALA 153 n 153 ALA 153 B ILE 154 n 154 ILE 154 B GLY 155 n 155 GLY 155 B ARG 156 n 156 ARG 156 B ARG 157 n 157 ARG 157 B LEU 158 n 158 LEU 158 B GLY 159 n 159 GLY 159 B THR 160 n 160 THR 160 B ILE 161 n 161 ILE 161 B VAL 162 n 162 VAL 162 B THR 163 n 163 THR 163 B TYR 164 n 164 TYR 164 B ASP 165 n 165 ASP 165 B THR 166 n 166 THR 166 B SER 167 n 167 SER 167 B LEU 168 n 168 LEU 168 B ASP 169 n 169 ASP 169 B ALA 170 n 170 ALA 170 B ALA 171 n 171 ALA 171 B ILE 172 n 172 ILE 172 B ALA 173 n 173 ALA 173 B PRO 174 n 174 PRO 174 B PHE 175 n 175 PHE 175 B ARG 176 n 176 ARG 176 B HIS 177 n 177 HIS 177 B LEU 178 n 178 LEU 178 B ASP 179 n 179 ASP 179 B PRO 180 n 180 PRO 180 B ALA 181 n 181 ALA 181 B THR 182 n 182 THR 182 B ARG 183 n 183 ARG 183 B GLU 184 n 184 GLU 184 B GLY 185 n 185 GLY 185 B VAL 186 n 186 VAL 186 B ARG 187 n 187 ARG 187 B ARG 188 n 188 ARG 188 B GLU 189 n 189 GLU 189 B ALA 190 n 190 ALA 190 B ALA 191 n 191 ALA 191 B GLU 192 n 192 GLU 192 B ALA 193 n 193 ALA 193 B GLU 194 n 194 GLU 194 B LEU 195 n 195 LEU 195 B ALA 196 n 196 ALA 196 B LEU 197 n 197 LEU 197 B ALA 198 n 198 ALA 198 B GLY 199 n 199 GLY 199 B ARG 200 n 200 ARG 200 B THR 201 n 201 THR 201 B TRP 202 n 202 TRP 202 B ALA 203 n 203 ALA 203 B PRO 204 n 204 PRO 204 B GLY 205 n 205 GLY 205 B VAL 206 n 206 VAL 206 B GLU 207 n 207 GLU 207 B ALA 208 n 208 ALA 208 B LEU 209 n 209 LEU 209 B THR 210 n 210 THR 210 B HIS 211 n 211 HIS 211 B THR 212 n 212 THR 212 B LEU 213 n 213 LEU 213 B LEU 214 n 214 LEU 214 B SER 215 n 215 SER 215 B THR 216 n 216 THR 216 B ALA 217 n 217 ALA 217 B VAL 218 n 218 VAL 218 B ASN 219 n 219 ASN 219 B ASN 220 n 220 ASN 220 B MET 221 n 221 MET 221 B MET 222 n 222 MET 222 B LEU 223 n 223 LEU 223 B ARG 224 n 224 ARG 224 B ASP 225 n 225 ASP 225 B ARG 226 n 226 ARG 226 B TRP 227 n 227 TRP 227 B SER 228 n 228 SER 228 B LEU 229 n 229 LEU 229 B VAL 230 n 230 VAL 230 B ALA 231 n 231 ALA 231 B GLU 232 n 232 GLU 232 B ARG 233 n 233 ARG 233 B ARG 234 n 234 ARG 234 B ARG 235 n 235 ARG 235 B GLN 236 n 236 GLN 236 B ALA 237 n 237 ALA 237 B GLY 238 n 238 GLY 238 B ILE 239 n 239 ILE 239 B ALA 240 n 240 ALA 240 B GLY 241 n 241 GLY 241 B HIS 242 n 242 HIS 242 B THR 243 n 243 THR 243 B TYR 244 n 244 TYR 244 B LEU 245 n 245 LEU 245 B GLN 246 n 246 GLN 246 B ALA 247 n 247 ALA 247 B author_and_software_defined_assembly PQS 4 tetrameric software_defined_assembly PISA 2 dimeric 3300 -11 18070 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_665 -x+1,-y+1,z crystal symmetry operation 71.7200000000 87.4300000000 0.0000000000 A O THR 163 A O THR 163 A N ALA 24 A N ALA 24 A O ILE 21 A O ILE 21 A N ILE 86 A N ILE 86 A O GLY 79 A O GLY 79 A N ASP 76 A N ASP 76 A O VAL 67 A O VAL 67 A N ILE 57 A N ILE 57 A O ASN 58 A O ASN 58 A N VAL 149 A N VAL 149 A O ALA 147 A O ALA 147 A N SER 131 A N SER 131 B O THR 163 B O THR 163 B N ALA 24 B N ALA 24 B O ILE 21 B O ILE 21 B N ILE 86 B N ILE 86 B O GLY 79 B O GLY 79 B N ASP 76 B N ASP 76 B O VAL 67 B O VAL 67 B N ILE 57 B N ILE 57 B O PRO 56 B O PRO 56 B N VAL 149 B N VAL 149 B O ALA 147 B O ALA 147 B N SER 131 B N SER 131 1 A CG ARG 17 A CG ARG 17 1 Y 1 A CD ARG 17 A CD ARG 17 1 Y 1 A NE ARG 17 A NE ARG 17 1 Y 1 A CZ ARG 17 A CZ ARG 17 1 Y 1 A NH1 ARG 17 A NH1 ARG 17 1 Y 1 A NH2 ARG 17 A NH2 ARG 17 1 Y 1 A CG1 ILE 103 A CG1 ILE 103 1 Y 1 A CG2 ILE 103 A CG2 ILE 103 1 Y 1 A CD1 ILE 103 A CD1 ILE 103 1 Y 1 A CG LYS 133 A CG LYS 133 1 Y 1 A CD LYS 133 A CD LYS 133 1 Y 1 A CE LYS 133 A CE LYS 133 1 Y 1 A NZ LYS 133 A NZ LYS 133 1 Y 1 A CG PRO 141 A CG PRO 141 1 Y 1 A CD PRO 141 A CD PRO 141 1 Y 1 B CG ARG 17 B CG ARG 17 1 Y 1 B CD ARG 17 B CD ARG 17 1 Y 1 B NE ARG 17 B NE ARG 17 1 Y 1 B CZ ARG 17 B CZ ARG 17 1 Y 1 B NH1 ARG 17 B NH1 ARG 17 1 Y 1 B NH2 ARG 17 B NH2 ARG 17 1 Y 1 B CG1 ILE 103 B CG1 ILE 103 1 Y 1 B CG2 ILE 103 B CG2 ILE 103 1 Y 1 B CD1 ILE 103 B CD1 ILE 103 1 Y 1 B CG LEU 111 B CG LEU 111 1 Y 1 B CD1 LEU 111 B CD1 LEU 111 1 Y 1 B CD2 LEU 111 B CD2 LEU 111 1 Y 1 B CG LYS 133 B CG LYS 133 1 Y 1 B CD LYS 133 B CD LYS 133 1 Y 1 B CE LYS 133 B CE LYS 133 1 Y 1 B NZ LYS 133 B NZ LYS 133 1 Y 1 B CG PRO 141 B CG PRO 141 1 Y 1 B CD PRO 141 B CD PRO 141 1 Y 1 A MET 1 A MET 1 1 Y 1 A ALA 2 A ALA 2 1 Y 1 A SER 3 A SER 3 1 Y 1 A ALA 4 A ALA 4 1 Y 1 A GLU 5 A GLU 5 1 Y 1 A MET 6 A MET 6 1 Y 1 A ARG 7 A ARG 7 1 Y 1 A GLU 8 A GLU 8 1 Y 1 A ARG 9 A ARG 9 1 Y 1 A LEU 10 A LEU 10 1 Y 1 A GLU 11 A GLU 11 1 Y 1 A ALA 12 A ALA 12 1 Y 1 A PRO 13 A PRO 13 1 Y 1 A LEU 14 A LEU 14 1 Y 1 A PRO 15 A PRO 15 1 Y 1 A ASP 16 A ASP 16 1 Y 1 A PHE 104 A PHE 104 1 Y 1 A GLU 105 A GLU 105 1 Y 1 A ARG 106 A ARG 106 1 Y 1 A ARG 107 A ARG 107 1 Y 1 A GLY 108 A GLY 108 1 Y 1 A PRO 109 A PRO 109 1 Y 1 A ALA 110 A ALA 110 1 Y 1 A ARG 134 A ARG 134 1 Y 1 A ARG 135 A ARG 135 1 Y 1 A GLY 136 A GLY 136 1 Y 1 A ASP 137 A ASP 137 1 Y 1 A GLU 138 A GLU 138 1 Y 1 A VAL 139 A VAL 139 1 Y 1 A PRO 140 A PRO 140 1 Y 1 B MET 1 B MET 1 1 Y 1 B ALA 2 B ALA 2 1 Y 1 B SER 3 B SER 3 1 Y 1 B ALA 4 B ALA 4 1 Y 1 B GLU 5 B GLU 5 1 Y 1 B MET 6 B MET 6 1 Y 1 B ARG 7 B ARG 7 1 Y 1 B GLU 8 B GLU 8 1 Y 1 B ARG 9 B ARG 9 1 Y 1 B LEU 10 B LEU 10 1 Y 1 B GLU 11 B GLU 11 1 Y 1 B ALA 12 B ALA 12 1 Y 1 B PRO 13 B PRO 13 1 Y 1 B LEU 14 B LEU 14 1 Y 1 B PRO 15 B PRO 15 1 Y 1 B ASP 16 B ASP 16 1 Y 1 B PHE 104 B PHE 104 1 Y 1 B GLU 105 B GLU 105 1 Y 1 B ARG 106 B ARG 106 1 Y 1 B ARG 107 B ARG 107 1 Y 1 B GLY 108 B GLY 108 1 Y 1 B PRO 109 B PRO 109 1 Y 1 B ALA 110 B ALA 110 1 Y 1 B ARG 134 B ARG 134 1 Y 1 B ARG 135 B ARG 135 1 Y 1 B GLY 136 B GLY 136 1 Y 1 B ASP 137 B ASP 137 1 Y 1 B GLU 138 B GLU 138 1 Y 1 B VAL 139 B VAL 139 1 Y 1 B PRO 140 B PRO 140 1 Y 1 A ARG 157 0.132 SIDE CHAIN 1 6.16 0.50 120.30 126.46 A A A NE CZ NH1 ARG ARG ARG 157 157 157 N 1 -5.30 0.50 120.30 115.00 A A A NE CZ NH2 ARG ARG ARG 157 157 157 N 1 A A CB SG CYS CYS 65 65 -0.127 0.016 1.812 1.685 N 1 A PRO 35 -52.73 171.46 1 A HIS 61 46.38 -0.41 1 A ARG 62 -69.20 93.42 1 A ALA 99 -66.18 97.70 1 A SER 100 -90.38 55.37 1 A ALA 102 -97.31 -64.54 1 A SER 112 -141.90 -75.55 1 A ARG 113 -167.96 -101.59 1 A LEU 125 -119.24 69.15 1 A ARG 143 -56.70 -8.50 1 A HIS 177 -100.09 62.09 1 A ALA 196 -65.19 -75.60 1 A LEU 197 -71.16 30.93 1 A ALA 203 -154.92 75.10 1 A ASP 225 44.77 84.82 1 A GLN 246 -83.72 36.53 1 B ALA 28 -176.73 149.66 1 B PRO 35 -49.83 169.41 1 B ASP 60 38.89 55.02 1 B HIS 61 53.16 -2.61 1 B SER 100 -90.21 52.31 1 B SER 112 -128.38 -52.62 1 B ARG 113 -169.87 -100.28 1 B ARG 143 -56.27 -7.66 1 B HIS 177 -91.20 58.75 1 B ALA 196 -63.29 -75.03 1 B LEU 197 -71.97 30.91 1 B ASP 225 67.55 -49.24 1 B ARG 226 59.38 -50.73 1 B GLN 246 -77.88 42.40 PAHCSDX.PRO TOPHCSDX.PRO 21.3 0 0 0 0 0 0 0.2910000 0.008 0.2050000 0.2050000 2.5 10 1475 14605 10.1 85.6 RANDOM 10000000.00 0.00100 1 RESTRAINED THROUGHOUT 2 MR, MIR 1VZV 0.40 0.27 5.00 0.40 0.27 2.5 10 43 3356 20 0 3293 0.015 1.9 24.7 1.49 3.11 1.50 4.90 2.00 4.79 2.00 7.34 2.50 1 RESTRAINED 1 X-RAY DIFFRACTION 0.227 2 50 2 2 X-RAY DIFFRACTION 0 0 3 3 X-RAY DIFFRACTION 0 0 4 4 X-RAY DIFFRACTION 0 0 0.2680000 0.024 0.2280000 2.61 124 1064 8 10.4 57.2 37.4 2.5 25. 1AT3 78502 2 0.0950000 0.0950000 1 12 5.0 91 0.2400000 2.50 2.61 3 0.2400000 1 2.2 88 model building X-PLOR 3.1 refinement X-PLOR 3.1 data reduction XDS data scaling XDS phasing X-PLOR 3.1 HERPES SIMPLEX VIRUS TYPE II PROTEASE 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A PRO 42 A PRO 42 HELX_P A ALA 48 A ALA 48 1 1 7 A VAL 89 A VAL 89 HELX_P A ALA 98 A ALA 98 1 2 10 A GLU 114 A GLU 114 HELX_P A TYR 124 A TYR 124 1 3 11 A LEU 168 A LEU 168 HELX_P A ILE 172 A ILE 172 1 4 5 A PRO 180 A PRO 180 HELX_P A ALA 196 A ALA 196 1 5 17 A VAL 206 A VAL 206 HELX_P A ASN 220 A ASN 220 1 6 15 A ARG 226 A ARG 226 HELX_P A GLN 236 A GLN 236 1 7 11 B PRO 42 B PRO 42 HELX_P B ALA 48 B ALA 48 1 8 7 B VAL 89 B VAL 89 HELX_P B ALA 98 B ALA 98 1 9 10 B GLU 114 B GLU 114 HELX_P B TYR 124 B TYR 124 1 10 11 B LEU 168 B LEU 168 HELX_P B ALA 173 B ALA 173 1 11 6 B PRO 180 B PRO 180 HELX_P B ALA 196 B ALA 196 1 12 17 B VAL 206 B VAL 206 HELX_P B ASN 219 B ASN 219 1 13 14 B TRP 227 B TRP 227 HELX_P B ALA 237 B ALA 237 1 14 11 covale 1.584 one A SER 129 A OG SER 129 1_555 A DFP 300 C P DFP 1_555 covale 1.629 one B SER 129 B OG SER 129 1_555 B DFP 300 D P DFP 1_555 SERINE PROTEASE SERINE PROTEASE, VIRAL PROTEASE, HSV2 PROTEASE A LEU 49 A LEU 49 1 A PRO 50 A PRO 50 -0.49 B LEU 49 B LEU 49 1 B PRO 50 B PRO 50 -0.42 given 0.931609 0.050040 0.360000 0.064230 -0.997555 -0.027556 0.357741 0.048794 -0.932545 -8.01720 46.20170 34.65840 Q69527_HHV2 UNP 1 1 Q69527 MASAEMRERLEAPLPDRAVPIYVAGFLALYDSGDPGELALDPDTVRAALPPENPLPINVDHRARCEVGRVLAVVNDPRGP FFVGLIACVQLERVLETAASAAIFERRGPALSREERLLYLITNYLPSVSLSTKRRGDEVPPDRTLFAHVALCAIGRRLGT IVTYDTSLDAAIAPFRHLDPATREGVRREAAEAELALAGRTWAPGVEALTHTLLSTAVNNMMLRDRWSLVAERRRQAGIA GHTYLQASEKFKIWGAESAPAPERGYKTGAPGAMDTSPAASVPAPQVAVRARQVASSSSSSSSFPAPADMNPVSASGAPA PPPPGDGSYLWIPASHYNQLVTGQSAPRHPPLTACGLPAAGTVAYGHPGAGPSPHYPPPPAHPYPGMLFAGPSPLEAQIA ALVGAIAADRQAGGLPAAAGDHGIRGSAKRRRHEVEQPEYDCGRDEPDRDFPYYPGEARPEPRPVDSRRAARQASGPHET ITALVGAVTSLQQELAHMRARTHAPYGPYPPVGPYHHPHADTETPAQPPRYPAEAVYLPPPHIAPPGPPLSGAVPPPSYP PVAVTPGPAPPLHQPSPAHAHPPPPPPGPTPPPAASLPQPEAPGAEAGALVNASSAAHVNVDTARAADLFVSQMMGSR 1 247 1AT3 1 247 Q69527 A 1 1 247 1 247 1AT3 1 247 Q69527 B 1 1 247 7 7 anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A THR 163 A THR 163 A ASP 165 A ASP 165 A ILE 21 A ILE 21 A PHE 26 A PHE 26 A GLY 79 A GLY 79 A ILE 86 A ILE 86 A GLU 66 A GLU 66 A ASP 76 A ASP 76 A LEU 55 A LEU 55 A VAL 59 A VAL 59 A PHE 146 A PHE 146 A CYS 152 A CYS 152 A SER 127 A SER 127 A THR 132 A THR 132 B VAL 162 B VAL 162 B ASP 165 B ASP 165 B ILE 21 B ILE 21 B PHE 26 B PHE 26 B GLY 79 B GLY 79 B ILE 86 B ILE 86 B GLU 66 B GLU 66 B ASP 76 B ASP 76 B LEU 55 B LEU 55 B VAL 59 B VAL 59 B PHE 146 B PHE 146 B CYS 152 B CYS 152 B SER 127 B SER 127 B THR 132 B THR 132 NOVEL ACTIVE SITE TRIAD SER 129, HIS 61 AND HIS 148. Unknown 3 BINDING SITE FOR RESIDUE DFP A 300 A DFP 300 Software 5 BINDING SITE FOR RESIDUE DFP B 300 B DFP 300 Software 6 A SER 129 A SER 129 3 1_555 A HIS 61 A HIS 61 3 1_555 A HIS 148 A HIS 148 3 1_555 A LEU 38 A LEU 38 5 1_555 A SER 129 A SER 129 5 1_555 A LEU 130 A LEU 130 5 1_555 A ARG 156 A ARG 156 5 1_555 A HOH 303 E HOH 5 1_555 B LEU 38 B LEU 38 6 1_555 B HIS 61 B HIS 61 6 1_555 B SER 129 B SER 129 6 1_555 B LEU 130 B LEU 130 6 1_555 B ARG 156 B ARG 156 6 1_555 B HOH 330 F HOH 6 1_555 18 P 21 21 2