1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kang, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking To be Published 0353 Primary Sequence at the Junction of Stem and Loop in RNA Hairpins Affects the Three-Dimensional Conformation in Solution 10.2210/pdb1atv/pdb pdb_00001atv 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 5520.380 RNA (5'-R(*GP*GP*GP*AP*CP*CP*AP*GP*AP*AP*GP*GP*UP*CP*CP*CP*G)-3') 1 syn polymer no no GGGACCAGAAGGUCCCG GGGACCAGAAGGUCCCG A polyribonucleotide n n n n n n n n n n n n n n n n n -21.979 1 19 A 1 A 16 -4.078 A_G1:C16_A 1 -16.669 -0.521 -0.116 -0.314 -10.990 1 19 A 2 A 15 -6.758 A_G2:C15_A 2 -20.024 -0.478 0.206 -0.472 -8.604 1 19 A 3 A 14 -4.147 A_G3:C14_A 3 -26.716 -0.510 0.206 -0.430 -4.452 1 20 A 4 A 13 -4.080 A_A4:U13_A 4 -21.933 0.139 -0.361 -0.232 9.819 1 19 A 5 A 12 0.256 A_C5:G12_A 5 -17.926 0.575 -0.386 -0.350 9.086 1 19 A 6 A 11 -2.039 A_C6:G11_A 6 15.939 0.474 -0.124 -0.388 1.662 A 7 A 10 81.028 A_A7:A10_A 7 30.635 5.844 0.671 -0.819 3.060 38.814 A A 1 2 -1.822 A A 16 15 2.904 -1.208 -1.314 -0.721 AA_G1G2:C15C16_AA 1 -4.836 7.296 38.505 -0.949 1.437 2.937 35.593 A A 2 3 9.853 A A 15 14 3.129 5.995 0.464 -0.813 AA_G2G3:C14C15_AA 2 -1.241 2.039 35.080 -2.145 -0.927 3.078 37.754 A A 3 4 6.805 A A 14 13 3.192 4.392 -0.240 -0.681 AA_G3A4:U13C14_AA 3 2.092 -3.242 37.451 -1.597 0.631 2.681 38.367 A A 4 5 5.083 A A 13 12 2.750 3.336 0.801 -0.794 AA_A4C5:G12U13_AA 4 0.363 -0.553 38.226 -1.554 -1.181 2.234 33.301 A A 5 6 34.827 A A 12 11 3.422 18.832 -1.107 -1.170 AA_C5C6:G11G12_AA 5 -1.153 2.132 27.566 -5.031 1.748 2.106 55.754 A A 6 7 27.084 A A 11 10 3.092 24.408 4.329 0.509 AA_C6A7:A10G11_AA 6 -11.753 13.041 49.198 -0.662 -5.211 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1998-02-25 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-03-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site ENSEMBLE OF 3 STRUCTURES Y BNL 1997-08-14 REL REL LEAST RESTRAINT VIOLATION 12 4 NOESY COSY TOCSY 50 mM NACL 6.2 1 ATM SOLVENT SYSTEM : D2O 298 K DETAILS CAN BE FOUND IN THE CITATION, NAR, ABOVE. molecular dynamics BRUNGER refinement X-PLOR structure solution X-PLOR 500 GE -500 600 Bruker BRUKER AMX-600 G 1 n 1 G 1 A G 2 n 2 G 2 A G 3 n 3 G 3 A A 4 n 4 A 4 A C 5 n 5 C 5 A C 6 n 6 C 6 A A 7 n 7 A 7 A G 8 n 8 G 8 A A 9 n 9 A 9 A A 10 n 10 A 10 A G 11 n 11 G 11 A G 12 n 12 G 12 A U 13 n 13 U 13 A C 14 n 14 C 14 A C 15 n 15 C 15 A C 16 n 16 C 16 A G 17 n 17 G 17 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A HO2' O4' A A 9 10 1.52 2 A A O6 H41 G C 2 15 1.59 3 A A HO2' O5' A G 10 11 1.48 3 A A O2' H62 A A 7 9 1.51 3 A A H41 O6 C G 6 11 1.58 3 A A O6 H41 G C 2 15 1.60 4 A A HO2' O4' A A 9 10 1.52 model building X-PLOR refinement X-PLOR phasing X-PLOR HAIRPIN WITH AGAA TETRALOOP, NMR, 4 STRUCTURES 1 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 16 A N3 C 16 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 16 A O2 C 16 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 16 A N4 C 16 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 15 A N3 C 15 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 15 A O2 C 15 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 15 A N4 C 15 1_555 hydrog WATSON-CRICK A G 3 A N1 G 3 1_555 A C 14 A N3 C 14 1_555 hydrog WATSON-CRICK A G 3 A N2 G 3 1_555 A C 14 A O2 C 14 1_555 hydrog WATSON-CRICK A G 3 A O6 G 3 1_555 A C 14 A N4 C 14 1_555 hydrog WATSON-CRICK A A 4 A N1 A 4 1_555 A U 13 A N3 U 13 1_555 hydrog WATSON-CRICK A A 4 A N6 A 4 1_555 A U 13 A O4 U 13 1_555 hydrog WATSON-CRICK A C 5 A N3 C 5 1_555 A G 12 A N1 G 12 1_555 hydrog WATSON-CRICK A C 5 A N4 C 5 1_555 A G 12 A O6 G 12 1_555 hydrog WATSON-CRICK A C 5 A O2 C 5 1_555 A G 12 A N2 G 12 1_555 hydrog WATSON-CRICK A C 6 A N3 C 6 1_555 A G 11 A N1 G 11 1_555 hydrog WATSON-CRICK A C 6 A N4 C 6 1_555 A G 11 A O6 G 11 1_555 hydrog WATSON-CRICK A C 6 A O2 C 6 1_555 A G 11 A N2 G 11 1_555 hydrog A-A MISPAIR A A 7 A N3 A 7 1_555 A A 10 A N6 A 10 1_555 RNA RIBONUCLEIC ACID, RNA, HAIRPIN 1ATV PDB 1 1ATV 1 17 1ATV 1 17 1ATV A 1 1 17 1 P 1