1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Yang, D.
Van Boom, S.S.G.E.
Reedijk, J.
Van Boom, J.H.
Farrell, N.
Wang, A.H.-J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C4 H24 Cl2 N6 Pt2
617.336
BIS(TRANS-PLATINUM ETHYLENEDIAMINE DIAMINE CHLORO)COMPLEX
1,1/T,T
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
2
577
586
10.1038/nsb0795-577
7664126
A novel DNA structure induced by the anticancer bisplatinum compound crosslinked to a GpC site in DNA.
1995
UK
Prog.Biophys.Mol.Biol.
PBIMAC
0918
0079-6107
66
81
Structural Studies of Interactions between Anticancer Platinum Drugs and DNA
1996
Urbana : University of Illinois at Urbana-Champaign (Thesis)
US
Thesis
2157
1996
10.2210/pdb1au6/pdb
pdb_00001au6
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
BISPLATINUM COMPOUND (1,1/T,T) INTERSTRAND-CROSSLINKED DNA OCTAMER
2426.617
DNA (5'-D(*CP*AP*TP*GP*CP*AP*TP*G)-3')
2
syn
polymer
617.336
BIS(TRANS-PLATINUM ETHYLENEDIAMINE DIAMINE CHLORO)COMPLEX
1
syn
non-polymer
no
no
(DC)(DA)(DT)(DG)(DC)(DA)(DT)(DG)
CATGCATG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
-25.551
1
20
A
6
A
3
6.401
A_DA6:DT3_A
1
-7.312
-0.401
-0.848
-0.382
-1.867
1
20
A
7
A
2
-1.323
A_DT7:DA2_A
2
-17.962
-0.776
-0.642
-0.196
-5.324
1
19
A
8
A
1
9.922
A_DG8:DC1_A
3
-13.669
-0.085
0.383
0.153
5.316
1
19
B
9
B
16
9.912
B_DC9:DG16_B
4
-13.707
0.084
0.386
0.153
1.853
1
20
B
10
B
15
-1.329
B_DA10:DT15_B
5
-17.954
0.776
-0.642
-0.196
25.562
1
20
B
11
B
14
6.412
B_DT11:DA14_B
6
-7.305
0.402
-0.849
-0.382
2.429
26.905
A
A
6
7
-17.535
A
A
3
2
2.453
-8.036
-1.049
-0.458
AA_DA6DT7:DA2DT3_AA
1
1.229
-2.682
25.670
0.591
2.496
2.872
26.653
A
A
7
8
18.320
A
A
2
1
3.258
8.297
0.754
-0.471
AA_DT7DG8:DC1DA2_AA
2
-2.504
5.529
25.229
-3.112
-2.267
2.242
51.110
A
B
8
9
-38.838
A
B
1
16
3.506
-31.391
0.022
1.011
AB_DG8DC9:DG16DC1_BA
3
-0.523
0.646
40.852
3.336
-0.061
2.869
26.681
B
B
9
10
18.410
B
B
16
15
3.257
8.345
-0.752
-0.472
BB_DC9DA10:DT15DG16_BB
4
2.525
-5.570
25.240
-3.120
2.265
2.429
26.905
B
B
10
11
-17.544
B
B
15
14
2.452
-8.040
1.049
-0.458
BB_DA10DT11:DA14DT15_BB
5
-1.228
2.679
25.668
0.591
-2.496
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1998-02-25
1
1
2008-03-03
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1997-09-11
REL
REL
BPT
BIS(TRANS-PLATINUM ETHYLENEDIAMINE DIAMINE CHLORO)COMPLEX
1
1
2D1HNOESY
TOCSY
150 mM NACL
7
1 ATM SOLVENT SYSTEM : H2O/D2O
275
K
NOE-RESTRAINED REFINEMENT SPEDREF
BRUNGER
refinement
X-PLOR
structure solution
X-PLOR
structure solution
QUANTA
500
Varian
VXR500
BPT
17
2
BPT
BPT
17
A
C
1
n
1
DC
1
A
A
2
n
2
DA
2
A
T
3
n
3
DT
3
A
G
4
n
4
DG
4
A
C
5
n
5
DC
5
A
A
6
n
6
DA
6
A
T
7
n
7
DT
7
A
G
8
n
8
DG
8
A
C
9
n
1
DC
9
B
A
10
n
2
DA
10
B
T
11
n
3
DT
11
B
G
12
n
4
DG
12
B
C
13
n
5
DC
13
B
A
14
n
6
DA
14
B
T
15
n
7
DT
15
B
G
16
n
8
DG
16
B
author_defined_assembly
2
dimeric
A
DG
4
A
N7
DG
4
1_555
A
BPT
17
C
PT1
BPT
1_555
A
BPT
17
C
N1
BPT
1_555
179.3
A
DG
4
A
N7
DG
4
1_555
A
BPT
17
C
PT1
BPT
1_555
A
BPT
17
C
N3
BPT
1_555
89.2
A
BPT
17
C
N1
BPT
1_555
A
BPT
17
C
PT1
BPT
1_555
A
BPT
17
C
N3
BPT
1_555
90.2
A
DG
4
A
N7
DG
4
1_555
A
BPT
17
C
PT1
BPT
1_555
A
BPT
17
C
N4
BPT
1_555
90.9
A
BPT
17
C
N1
BPT
1_555
A
BPT
17
C
PT1
BPT
1_555
A
BPT
17
C
N4
BPT
1_555
89.8
A
BPT
17
C
N3
BPT
1_555
A
BPT
17
C
PT1
BPT
1_555
A
BPT
17
C
N4
BPT
1_555
179.8
B
DG
12
B
N7
DG
4
1_555
A
BPT
17
C
PT2
BPT
1_555
A
BPT
17
C
N2
BPT
1_555
179.2
B
DG
12
B
N7
DG
4
1_555
A
BPT
17
C
PT2
BPT
1_555
A
BPT
17
C
N5
BPT
1_555
89.1
A
BPT
17
C
N2
BPT
1_555
A
BPT
17
C
PT2
BPT
1_555
A
BPT
17
C
N5
BPT
1_555
90.1
B
DG
12
B
N7
DG
4
1_555
A
BPT
17
C
PT2
BPT
1_555
A
BPT
17
C
N6
BPT
1_555
90.9
A
BPT
17
C
N2
BPT
1_555
A
BPT
17
C
PT2
BPT
1_555
A
BPT
17
C
N6
BPT
1_555
89.8
A
BPT
17
C
N5
BPT
1_555
A
BPT
17
C
PT2
BPT
1_555
A
BPT
17
C
N6
BPT
1_555
179.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
H2''
O4'
DA
DT
2
3
1.56
1
B
B
H2''
O4'
DA
DT
10
11
1.56
1
A
DG
4
0.099
SIDE CHAIN
1
A
DA
6
0.067
SIDE CHAIN
1
B
DG
12
0.099
SIDE CHAIN
1
B
DA
14
0.067
SIDE CHAIN
1
7.67
1.10
109.80
117.47
A
A
A
C5'
C4'
O4'
DC
DC
DC
1
1
1
N
1
-4.94
0.80
105.90
100.96
A
A
A
O4'
C1'
C2'
DC
DC
DC
1
1
1
N
1
13.00
1.10
109.80
122.80
A
A
A
C5'
C4'
O4'
DA
DA
DA
2
2
2
N
1
2.31
0.30
108.30
110.61
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
1
-12.43
1.90
104.00
91.57
A
A
A
O3'
P
O5'
DA
DT
DT
2
3
3
Y
1
7.85
1.10
109.80
117.65
A
A
A
C5'
C4'
O4'
DT
DT
DT
3
3
3
N
1
4.52
0.30
108.30
112.82
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
1
5.03
0.60
119.00
124.03
A
A
A
C4
C5
C7
DT
DT
DT
3
3
3
N
1
-6.13
0.60
122.90
116.77
A
A
A
C6
C5
C7
DT
DT
DT
3
3
3
N
1
3.10
0.30
108.30
111.40
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
3.99
0.50
113.10
117.09
A
A
A
N7
C8
N9
DG
DG
DG
4
4
4
N
1
8.45
1.20
119.70
128.15
A
A
A
C3'
O3'
P
DG
DG
DC
4
4
5
Y
1
7.42
1.20
115.70
123.12
A
A
A
C5'
C4'
C3'
DC
DC
DC
5
5
5
N
1
-4.95
0.80
105.90
100.95
A
A
A
O4'
C1'
C2'
DC
DC
DC
5
5
5
N
1
3.45
0.50
119.90
123.35
A
A
A
C2
N3
C4
DC
DC
DC
5
5
5
N
1
4.47
0.60
106.00
110.47
A
A
A
O4'
C4'
C3'
DA
DA
DA
6
6
6
N
1
-6.58
0.70
102.20
95.62
A
A
A
C4'
C3'
C2'
DA
DA
DA
6
6
6
N
1
9.93
0.30
108.30
118.23
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
1
-3.28
0.50
103.90
100.62
A
A
A
C5
N7
C8
DA
DA
DA
6
6
6
N
1
3.45
0.50
113.80
117.25
A
A
A
N7
C8
N9
DA
DA
DA
6
6
6
N
1
5.37
0.30
108.30
113.67
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
8.46
1.20
119.70
128.16
A
A
A
C3'
O3'
P
DT
DT
DG
7
7
8
Y
1
-8.30
0.80
105.90
97.60
A
A
A
O4'
C1'
C2'
DG
DG
DG
8
8
8
N
1
9.66
0.30
108.30
117.96
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
1
7.58
1.10
109.80
117.38
B
B
B
C5'
C4'
O4'
DC
DC
DC
9
9
9
N
1
-5.01
0.80
105.90
100.89
B
B
B
O4'
C1'
C2'
DC
DC
DC
9
9
9
N
1
12.97
1.10
109.80
122.77
B
B
B
C5'
C4'
O4'
DA
DA
DA
10
10
10
N
1
2.32
0.30
108.30
110.62
B
B
B
O4'
C1'
N9
DA
DA
DA
10
10
10
N
1
-12.42
1.90
104.00
91.58
B
B
B
O3'
P
O5'
DA
DT
DT
10
11
11
Y
1
7.83
1.10
109.80
117.63
B
B
B
C5'
C4'
O4'
DT
DT
DT
11
11
11
N
1
4.56
0.30
108.30
112.86
B
B
B
O4'
C1'
N1
DT
DT
DT
11
11
11
N
1
4.99
0.60
119.00
123.99
B
B
B
C4
C5
C7
DT
DT
DT
11
11
11
N
1
-6.15
0.60
122.90
116.75
B
B
B
C6
C5
C7
DT
DT
DT
11
11
11
N
1
3.06
0.30
108.30
111.36
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
3.92
0.50
113.10
117.02
B
B
B
N7
C8
N9
DG
DG
DG
12
12
12
N
1
8.44
1.20
119.70
128.14
B
B
B
C3'
O3'
P
DG
DG
DC
12
12
13
Y
1
7.42
1.20
115.70
123.12
B
B
B
C5'
C4'
C3'
DC
DC
DC
13
13
13
N
1
-4.91
0.80
105.90
100.99
B
B
B
O4'
C1'
C2'
DC
DC
DC
13
13
13
N
1
3.43
0.50
119.90
123.33
B
B
B
C2
N3
C4
DC
DC
DC
13
13
13
N
1
4.53
0.60
106.00
110.53
B
B
B
O4'
C4'
C3'
DA
DA
DA
14
14
14
N
1
-6.59
0.70
102.20
95.61
B
B
B
C4'
C3'
C2'
DA
DA
DA
14
14
14
N
1
9.97
0.30
108.30
118.27
B
B
B
O4'
C1'
N9
DA
DA
DA
14
14
14
N
1
-3.19
0.50
103.90
100.71
B
B
B
C5
N7
C8
DA
DA
DA
14
14
14
N
1
3.39
0.50
113.80
117.19
B
B
B
N7
C8
N9
DA
DA
DA
14
14
14
N
1
5.35
0.30
108.30
113.65
B
B
B
O4'
C1'
N1
DT
DT
DT
15
15
15
N
1
8.45
1.20
119.70
128.15
B
B
B
C3'
O3'
P
DT
DT
DG
15
15
16
Y
1
-8.28
0.80
105.90
97.62
B
B
B
O4'
C1'
C2'
DG
DG
DG
16
16
16
N
1
9.71
0.30
108.30
118.01
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
1
A
A
C5
C7
DT
DT
3
3
0.041
0.006
1.496
1.537
N
1
A
A
C8
N9
DG
DG
4
4
-0.053
0.007
1.374
1.321
N
1
A
A
C5'
C4'
DC
DC
5
5
0.100
0.007
1.512
1.612
N
1
A
A
C5
C6
DC
DC
5
5
0.053
0.008
1.339
1.392
N
1
A
A
C3'
C2'
DA
DA
6
6
-0.052
0.008
1.516
1.464
N
1
A
A
N9
C4
DA
DA
6
6
-0.040
0.006
1.374
1.334
N
1
A
A
C5
C7
DT
DT
7
7
0.044
0.006
1.496
1.540
N
1
B
B
C5
C7
DT
DT
11
11
0.042
0.006
1.496
1.538
N
1
B
B
C8
N9
DG
DG
12
12
-0.053
0.007
1.374
1.321
N
1
B
B
C5'
C4'
DC
DC
13
13
0.100
0.007
1.512
1.612
N
1
B
B
C5
C6
DC
DC
13
13
0.053
0.008
1.339
1.392
N
1
B
B
C3'
C2'
DA
DA
14
14
-0.052
0.008
1.516
1.464
N
1
B
B
N9
C4
DA
DA
14
14
-0.040
0.006
1.374
1.334
N
1
B
B
C5
C7
DT
DT
15
15
0.043
0.006
1.496
1.539
N
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
SOLUTION STRUCTURE OF DNA D(CATGCATG) INTERSTRAND-CROSSLINKED BY BISPLATIN COMPOUND (1,1/T,T), NMR, MINIMIZED AVERAGE STRUCTURE
1
N
N
1
N
N
2
N
N
metalc
1.987
A
DG
4
A
N7
DG
4
1_555
A
BPT
17
C
PT1
BPT
1_555
metalc
1.987
A
BPT
17
C
PT2
BPT
1_555
B
DG
12
B
N7
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
A
DG
8
A
N1
DG
8
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
A
DG
8
A
O6
DG
8
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
A
DG
8
A
N2
DG
8
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N1
DA
2
1_555
A
DT
7
A
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N6
DA
2
1_555
A
DT
7
A
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DT
3
A
N3
DT
3
1_555
A
DA
6
A
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
3
A
O4
DT
3
1_555
A
DA
6
A
N6
DA
6
1_555
hydrog
DG-DG MISPAIR
A
DG
4
A
N1
DG
4
1_555
A
DG
8
A
N3
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
9
B
N3
DC
1
1_555
B
DG
16
B
N1
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
9
B
N4
DC
1
1_555
B
DG
16
B
O6
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
9
B
O2
DC
1
1_555
B
DG
16
B
N2
DG
8
1_555
hydrog
WATSON-CRICK
B
DA
10
B
N1
DA
2
1_555
B
DT
15
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
B
DA
10
B
N6
DA
2
1_555
B
DT
15
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
B
DT
11
B
N3
DT
3
1_555
B
DA
14
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
B
DT
11
B
O4
DT
3
1_555
B
DA
14
B
N6
DA
6
1_555
hydrog
DG-DG MISPAIR
B
DG
12
B
N1
DG
4
1_555
B
DG
16
B
N3
DG
8
1_555
DNA
BISPLATINUM COMPOUND (1, 1/T, T), DNA, INTERSTRAND CROSSLINK, DUMBBELL STRUCTURE, DEOXYRIBONUCLEIC ACID
1AU6
PDB
1
1AU6
1
8
1AU6
1
8
1AU6
A
1
1
8
9
16
1AU6
9
16
1AU6
B
1
1
8
BINDING SITE FOR RESIDUE BPT A 17
A
BPT
17
Software
6
A
DA
2
A
DA
2
6
1_555
A
DT
3
A
DT
3
6
1_555
A
DG
4
A
DG
4
6
1_555
B
DA
10
B
DA
2
6
1_555
B
DT
11
B
DT
3
6
1_555
B
DG
12
B
DG
4
6
1_555
1
P 1