0.016534 0.000000 0.000000 0.000000 0.016534 0.000000 0.000000 0.000000 0.016753 0.00000 0.00000 0.00000 Hill, C.P. Gamble, T.R. Yoo, S. Vajdos, F.F. Von Schwedler, U.K. Worthylake, D.K. Wang, H. Mccutcheon, J.P. Sundquist, W.I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 60.480 60.480 59.690 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 S C N 142 N C N 143 N C N 144 N C N 145 N O N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N N N 160 S C N 161 N C N 162 N O N 163 N C N 164 N C N 165 N C N 166 N C N 167 N O N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N N N 182 S C N 183 N C N 184 N O N 185 N C N 186 N C N 187 N C N 188 N C N 189 N N N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N S N 213 N C N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C Y 231 N C Y 232 N C Y 233 N C Y 234 N C Y 235 N C Y 236 N C N 237 N O N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N N N 250 S C N 251 N C N 252 N O N 253 N C N 254 N C N 255 N C N 256 N O N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C N 271 N O N 272 N O N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 R C N 285 N O N 286 N C N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N N N 298 S C N 299 N C N 300 N O N 301 N C Y 302 N C Y 303 N C Y 304 N C Y 305 N N Y 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N N N 325 S C N 326 N C N 327 N O N 328 N C Y 329 N C Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N O N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N doub N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing Y 225 N doub Y 226 N sing Y 227 N sing N 228 N sing Y 229 N doub N 230 N sing Y 231 N doub N 232 N sing Y 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N doub N 290 N sing N 291 N sing N 292 N sing N 293 N sing Y 294 N doub Y 295 N sing Y 296 N sing N 297 N sing Y 298 N doub Y 299 N sing Y 300 N sing N 301 N sing Y 302 N sing Y 303 N doub N 304 N sing Y 305 N doub N 306 N sing Y 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing Y 322 N doub Y 323 N sing Y 324 N sing N 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing US Science SCIEAS 0038 0036-8075 278 849 853 10.1126/science.278.5339.849 9346481 Structure of the carboxyl-terminal dimerization domain of the HIV-1 capsid protein. 1997 10.2210/pdb1aum/pdb pdb_00001aum 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 COLLIMATOR CCD 1997-07 M x-ray 1 1.0 X12B NSLS SYNCHROTRON NSLS BEAMLINE X12B 7970.099 HIV CAPSID C-TERMINAL DOMAIN, RESIDUES 146 - 231 1 man polymer CAC146 no no LDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQG LDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia Escherichia coli sample BL21 11676 Human immunodeficiency virus 1 469008 Escherichia coli BL21(DE3) BL21 (DE3) PET11A WISP97-7 1 3.42 64.06 VAPOR DIFFUSION, SITTING DROP 8.0 CRYSTALS OF CAC(146-231) WERE GROWN AT 4C IN 8 MICROLITER SITTING DROPS CONTAINING A 1:1 MIXTURE OF PROTEIN SOLUTION (2.1 MM CA(151-231) IN 10 MM TRIS (PH 8.0) AND 2 MM 2-MERCAPTOETHANOL) AND RESERVOIR SOLUTION (2.0 M AMMONIUM SULFATE), vapor diffusion - sitting drop chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Refinement description 1 0 1998-01-14 1 1 2008-03-24 1 2 2011-07-13 1 3 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession Y BNL 1997-08-29 REL REL 1AM3 C-TERMINAL CAPSID (151 - 231) PDB experimental model LEU 151 n 1 LEU 151 A ASP 152 n 2 ASP 152 A ILE 153 n 3 ILE 153 A ARG 154 n 4 ARG 154 A GLN 155 n 5 GLN 155 A GLY 156 n 6 GLY 156 A PRO 157 n 7 PRO 157 A LYS 158 n 8 LYS 158 A GLU 159 n 9 GLU 159 A PRO 160 n 10 PRO 160 A PHE 161 n 11 PHE 161 A ARG 162 n 12 ARG 162 A ASP 163 n 13 ASP 163 A TYR 164 n 14 TYR 164 A VAL 165 n 15 VAL 165 A ASP 166 n 16 ASP 166 A ARG 167 n 17 ARG 167 A PHE 168 n 18 PHE 168 A TYR 169 n 19 TYR 169 A LYS 170 n 20 LYS 170 A THR 171 n 21 THR 171 A LEU 172 n 22 LEU 172 A ARG 173 n 23 ARG 173 A ALA 174 n 24 ALA 174 A GLU 175 n 25 GLU 175 A GLN 176 n 26 GLN 176 A ALA 177 n 27 ALA 177 A SER 178 n 28 SER 178 A GLN 179 n 29 GLN 179 A GLU 180 n 30 GLU 180 A VAL 181 n 31 VAL 181 A LYS 182 n 32 LYS 182 A ASN 183 n 33 ASN 183 A TRP 184 n 34 TRP 184 A MET 185 n 35 MET 185 A THR 186 n 36 THR 186 A GLU 187 n 37 GLU 187 A THR 188 n 38 THR 188 A LEU 189 n 39 LEU 189 A LEU 190 n 40 LEU 190 A VAL 191 n 41 VAL 191 A GLN 192 n 42 GLN 192 A ASN 193 n 43 ASN 193 A ALA 194 n 44 ALA 194 A ASN 195 n 45 ASN 195 A PRO 196 n 46 PRO 196 A ASP 197 n 47 ASP 197 A CYS 198 n 48 CYS 198 A LYS 199 n 49 LYS 199 A THR 200 n 50 THR 200 A ILE 201 n 51 ILE 201 A LEU 202 n 52 LEU 202 A LYS 203 n 53 LYS 203 A ALA 204 n 54 ALA 204 A LEU 205 n 55 LEU 205 A GLY 206 n 56 GLY 206 A PRO 207 n 57 PRO 207 A GLY 208 n 58 GLY 208 A ALA 209 n 59 ALA 209 A THR 210 n 60 THR 210 A LEU 211 n 61 LEU 211 A GLU 212 n 62 GLU 212 A GLU 213 n 63 GLU 213 A MET 214 n 64 MET 214 A MET 215 n 65 MET 215 A THR 216 n 66 THR 216 A ALA 217 n 67 ALA 217 A CYS 218 n 68 CYS 218 A GLN 219 n 69 GLN 219 A GLY 220 n 70 GLY 220 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 6_665 -x+1,-y+1,z crystal symmetry operation 60.4800000000 60.4800000000 0.0000000000 1 A CE LYS 170 A CE LYS 20 0 Y 1 A NZ LYS 170 A NZ LYS 20 0 Y 1 A CB GLN 176 A CB GLN 26 0 Y 1 A CG GLN 176 A CG GLN 26 0 Y 1 A CD GLN 176 A CD GLN 26 0 Y 1 A OE1 GLN 176 A OE1 GLN 26 0 Y 1 A NE2 GLN 176 A NE2 GLN 26 0 Y 1 A NZ LYS 182 A NZ LYS 32 0 Y 1 A CE LYS 199 A CE LYS 49 0 Y 1 A NZ LYS 199 A NZ LYS 49 0 Y 1 A CG LYS 203 A CG LYS 53 0 Y 1 A CD LYS 203 A CD LYS 53 0 Y 1 A CE LYS 203 A CE LYS 53 0 Y 1 A NZ LYS 203 A NZ LYS 53 0 Y 1 A A CD1 CD1 LEU LEU 151 189 1.98 1 A A CZ HG1 ARG THR 162 200 0.35 1_555 7_554 1 A A HH12 O ARG PRO 162 196 0.43 1_555 7_554 1 A A CZ OG1 ARG THR 162 200 0.78 1_555 7_554 1 A A NE OG1 ARG THR 162 200 0.84 1_555 7_554 1 A A NH1 HG1 ARG THR 162 200 1.04 1_555 7_554 1 A A NH1 O ARG PRO 162 196 1.11 1_555 7_554 1 A A HE CB ARG THR 162 200 1.13 1_555 7_554 1 A A HE CG2 ARG THR 162 200 1.13 1_555 7_554 1 A A HH22 H ARG THR 162 200 1.22 1_555 7_554 1 A A NE CB ARG THR 162 200 1.30 1_555 7_554 1 A A HE OG1 ARG THR 162 200 1.34 1_555 7_554 1 A A HH22 N ARG THR 162 200 1.35 1_555 7_554 1 A A HH21 CA ARG THR 162 200 1.37 1_555 7_554 1 A A NH2 H ARG THR 162 200 1.44 1_555 7_554 1 A A NH2 N ARG THR 162 200 1.46 1_555 7_554 1 A A NE HG1 ARG THR 162 200 1.48 1_555 7_554 1 A A NH2 HG1 ARG THR 162 200 1.55 1_555 7_554 1 A A NH2 OG1 ARG THR 162 200 1.58 1_555 7_554 1 A A CZ CB ARG THR 162 200 1.65 1_555 7_554 1 A A NH2 CA ARG THR 162 200 1.72 1_555 7_554 1 A A CG1 CE ILE MET 201 215 1.93 1_555 8_555 1 A A NH2 CB ARG THR 162 200 1.96 1_555 7_554 1 A A NH1 OG1 ARG THR 162 200 1.98 1_555 7_554 1 A A NE CG2 ARG THR 162 200 1.99 1_555 7_554 1 A A CG2 OE2 ILE GLU 201 212 2.07 1_555 8_555 1 A A CD2 OE1 LEU GLN 189 192 2.15 1_555 6_665 1 A A CD OG1 ARG THR 162 200 2.18 1_555 7_554 1 A THR 188 -99.45 -88.34 43.44 0.355 0.355 3.0 8.0 2677 99.1 1 0.0 MOLECULAR REPLACEMENT C-TERMINAL CAPSID (151 - 231) 3.0 8.0 0 556 0 0 556 2.8 20.0 1AUM 2681 0. 0.044 1 18.0 99.1 2.8 2.85 2.5 0.368 100.0 data reduction DENZO data scaling SCALEPACK model building X-PLOR 3.843 refinement X-PLOR 3.843 phasing X-PLOR 3.843 HIV CAPSID C-TERMINAL DOMAIN (CAC146) 1 N N A PHE 161 A PHE 11 HELX_P A GLU 175 A GLU 25 1 1 15 A GLN 179 A GLN 29 HELX_P A GLU 187 A GLU 37 1 2 9 A LEU 189 A LEU 39 HELX_P A GLN 192 A GLN 42 1 3 4 A PRO 196 A PRO 46 HELX_P A LEU 205 A LEU 55 1 4 10 A LEU 211 A LEU 61 HELX_P A ALA 217 A ALA 67 1 5 7 disulf 2.413 A CYS 198 A SG CYS 48 1_555 A CYS 218 A SG CYS 68 1_555 VIRAL PROTEIN CORE PROTEIN, HIV, CAPSID, C-TERMINAL DOMAIN, CAC146, Viral protein POL_HV1N5 UNP 1 1 P12497 GARASVLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNT IAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQAAADTGNNSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEE KAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTS TLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETL LVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNPATIMIQKGNFRNQRKTVKCFNCGKEGHI AKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQEPIDK ELYPLASLRSLFGSDPSSQ 282 351 1AUM 151 220 P12497 A 1 1 70 80 I 41