0.016181
0.000000
0.000000
0.000000
0.015480
0.000000
0.000000
0.000000
0.010050
0.00000
0.00000
0.00000
Hodel, A.E.
Gershon, P.D.
Quiocho, F.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
61.800
64.600
99.500
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C11 H20 N5 O14 P3
539.223
n
7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C14 H20 N6 O5 S
384.411
n
S-ADENOSYL-L-HOMOCYSTEINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Mol.Cell
MOCEFL
2168
1097-2765
1
443
447
10.1016/S1097-2765(00)80044-1
9660928
Structural basis for sequence-nonspecific recognition of 5'-capped mRNA by a cap-modifying enzyme.
1998
10.2210/pdb1av6/pdb
pdb_00001av6
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
103.00
1
GOBEL MIRROR
AREA DETECTOR
1997-08-15
SIEMENS
NI FILTER
M
x-ray
1
1.0
ROTATING ANODE
RIGAKU RU200
1946.277
RNA (5'-R(*GP*AP*AP*AP*AP*A)-3')
1
man
polymer
34573.008
Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase
2.1.1.57
C-TERMINAL DELETION OF 26 RESIDUES
1
man
polymer
539.223
7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE
1
syn
non-polymer
384.411
S-ADENOSYL-L-HOMOCYSTEINE
1
syn
non-polymer
MUTATION:C-TERMINAL DELETION OF 26 RESIDUES
5' CAPPED RNA HEXAMER
Poly(A) polymerase regulatory subunit, Poly(A) polymerase small subunit, PAP-S, VP39
no
no
GAAAAA
GAAAAA
B
polyribonucleotide
no
no
VVSLDKPFMYFEEIDNELDYEPESANEVAKKLPYQGQLKLLLGELFFLSKLQRHGILDGATVVYIGSAPGTHIRYLRDHF
YNLGVIIKWMLIDGRHHDPILNGLRDVTLVTRFVDEEYLRSIKKQLHPSKIILISDVRSKRGGNEPSTADLLSNYALQNV
MISILNPVASSLKWRCPFPDQWIKDFYIPHGNKMLQPFAPSYSAEMRLLSIYTGENMRLTRVTKSDAVNYEKKMYYLNKI
VRNKVVVNFDYPNQEYDYFHMYFMLRTVYCNKTFPTTKAKVLFLQQSIFRFLNIP
VVSLDKPFMYFEEIDNELDYEPESANEVAKKLPYQGQLKLLLGELFFLSKLQRHGILDGATVVYIGSAPGTHIRYLRDHF
YNLGVIIKWMLIDGRHHDPILNGLRDVTLVTRFVDEEYLRSIKKQLHPSKIILISDVRSKRGGNEPSTADLLSNYALQNV
MISILNPVASSLKWRCPFPDQWIKDFYIPHGNKMLQPFAPSYSAEMRLLSIYTGENMRLTRVTKSDAVNYEKKMYYLNKI
VRNKVVVNFDYPNQEYDYFHMYFMLRTVYCNKTFPTTKAKVLFLQQSIFRFLNIP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
VACV
Orthopoxvirus
Western Reserve
Escherichia
Escherichia coli
sample
PAPS, VACWR095, F9
10254
Vaccinia virus WR
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
1
2.77
56.0000
8.50
pH 8.50
reflns
reflns_shell
struct_conn
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Derived calculations
Database references
Derived calculations
Refinement description
1
0
1998-02-25
1
1
2008-05-22
1
2
2011-07-13
1
3
2020-02-26
1
4
2023-08-02
_reflns.pdbx_Rmerge_I_obs
_reflns_shell.Rmerge_I_obs
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
NDB
Y
NDB
1997-09-26
REL
REL
MGT
7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE
SAH
S-ADENOSYL-L-HOMOCYSTEINE
1VPT
PDB ENTRY 1VPT
PDB
experimental model
MGT
402
3
MGT
MGT
408
B
SAH
400
4
SAH
SAH
400
A
+G
402
n
1
G
402
B
A
403
n
2
A
403
B
A
404
n
3
A
404
B
A
405
n
4
A
405
B
A
406
n
5
A
406
B
A
407
n
6
A
407
B
VAL
3
n
1
VAL
3
A
VAL
4
n
2
VAL
4
A
SER
5
n
3
SER
5
A
LEU
6
n
4
LEU
6
A
ASP
7
n
5
ASP
7
A
LYS
8
n
6
LYS
8
A
PRO
9
n
7
PRO
9
A
PHE
10
n
8
PHE
10
A
MET
11
n
9
MET
11
A
TYR
12
n
10
TYR
12
A
PHE
13
n
11
PHE
13
A
GLU
14
n
12
GLU
14
A
GLU
15
n
13
GLU
15
A
ILE
16
n
14
ILE
16
A
ASP
17
n
15
ASP
17
A
ASN
18
n
16
ASN
18
A
GLU
19
n
17
GLU
19
A
LEU
20
n
18
LEU
20
A
ASP
21
n
19
ASP
21
A
TYR
22
n
20
TYR
22
A
GLU
23
n
21
GLU
23
A
PRO
24
n
22
PRO
24
A
GLU
25
n
23
GLU
25
A
SER
26
n
24
SER
26
A
ALA
27
n
25
ALA
27
A
ASN
28
n
26
ASN
28
A
GLU
29
n
27
GLU
29
A
VAL
30
n
28
VAL
30
A
ALA
31
n
29
ALA
31
A
LYS
32
n
30
LYS
32
A
LYS
33
n
31
LYS
33
A
LEU
34
n
32
LEU
34
A
PRO
35
n
33
PRO
35
A
TYR
36
n
34
TYR
36
A
GLN
37
n
35
GLN
37
A
GLY
38
n
36
GLY
38
A
GLN
39
n
37
GLN
39
A
LEU
40
n
38
LEU
40
A
LYS
41
n
39
LYS
41
A
LEU
42
n
40
LEU
42
A
LEU
43
n
41
LEU
43
A
LEU
44
n
42
LEU
44
A
GLY
45
n
43
GLY
45
A
GLU
46
n
44
GLU
46
A
LEU
47
n
45
LEU
47
A
PHE
48
n
46
PHE
48
A
PHE
49
n
47
PHE
49
A
LEU
50
n
48
LEU
50
A
SER
51
n
49
SER
51
A
LYS
52
n
50
LYS
52
A
LEU
53
n
51
LEU
53
A
GLN
54
n
52
GLN
54
A
ARG
55
n
53
ARG
55
A
HIS
56
n
54
HIS
56
A
GLY
57
n
55
GLY
57
A
ILE
58
n
56
ILE
58
A
LEU
59
n
57
LEU
59
A
ASP
60
n
58
ASP
60
A
GLY
61
n
59
GLY
61
A
ALA
62
n
60
ALA
62
A
THR
63
n
61
THR
63
A
VAL
64
n
62
VAL
64
A
VAL
65
n
63
VAL
65
A
TYR
66
n
64
TYR
66
A
ILE
67
n
65
ILE
67
A
GLY
68
n
66
GLY
68
A
SER
69
n
67
SER
69
A
ALA
70
n
68
ALA
70
A
PRO
71
n
69
PRO
71
A
GLY
72
n
70
GLY
72
A
THR
73
n
71
THR
73
A
HIS
74
n
72
HIS
74
A
ILE
75
n
73
ILE
75
A
ARG
76
n
74
ARG
76
A
TYR
77
n
75
TYR
77
A
LEU
78
n
76
LEU
78
A
ARG
79
n
77
ARG
79
A
ASP
80
n
78
ASP
80
A
HIS
81
n
79
HIS
81
A
PHE
82
n
80
PHE
82
A
TYR
83
n
81
TYR
83
A
ASN
84
n
82
ASN
84
A
LEU
85
n
83
LEU
85
A
GLY
86
n
84
GLY
86
A
VAL
87
n
85
VAL
87
A
ILE
88
n
86
ILE
88
A
ILE
89
n
87
ILE
89
A
LYS
90
n
88
LYS
90
A
TRP
91
n
89
TRP
91
A
MET
92
n
90
MET
92
A
LEU
93
n
91
LEU
93
A
ILE
94
n
92
ILE
94
A
ASP
95
n
93
ASP
95
A
GLY
96
n
94
GLY
96
A
ARG
97
n
95
ARG
97
A
HIS
98
n
96
HIS
98
A
HIS
99
n
97
HIS
99
A
ASP
100
n
98
ASP
100
A
PRO
101
n
99
PRO
101
A
ILE
102
n
100
ILE
102
A
LEU
103
n
101
LEU
103
A
ASN
104
n
102
ASN
104
A
GLY
105
n
103
GLY
105
A
LEU
106
n
104
LEU
106
A
ARG
107
n
105
ARG
107
A
ASP
108
n
106
ASP
108
A
VAL
109
n
107
VAL
109
A
THR
110
n
108
THR
110
A
LEU
111
n
109
LEU
111
A
VAL
112
n
110
VAL
112
A
THR
113
n
111
THR
113
A
ARG
114
n
112
ARG
114
A
PHE
115
n
113
PHE
115
A
VAL
116
n
114
VAL
116
A
ASP
117
n
115
ASP
117
A
GLU
118
n
116
GLU
118
A
GLU
119
n
117
GLU
119
A
TYR
120
n
118
TYR
120
A
LEU
121
n
119
LEU
121
A
ARG
122
n
120
ARG
122
A
SER
123
n
121
SER
123
A
ILE
124
n
122
ILE
124
A
LYS
125
n
123
LYS
125
A
LYS
126
n
124
LYS
126
A
GLN
127
n
125
GLN
127
A
LEU
128
n
126
LEU
128
A
HIS
129
n
127
HIS
129
A
PRO
130
n
128
PRO
130
A
SER
131
n
129
SER
131
A
LYS
132
n
130
LYS
132
A
ILE
133
n
131
ILE
133
A
ILE
134
n
132
ILE
134
A
LEU
135
n
133
LEU
135
A
ILE
136
n
134
ILE
136
A
SER
137
n
135
SER
137
A
ASP
138
n
136
ASP
138
A
VAL
139
n
137
VAL
139
A
ARG
140
n
138
ARG
140
A
SER
141
n
139
SER
141
A
n
140
142
A
n
141
143
A
n
142
144
A
n
143
145
A
n
144
146
A
n
145
147
A
PRO
148
n
146
PRO
148
A
SER
149
n
147
SER
149
A
THR
150
n
148
THR
150
A
ALA
151
n
149
ALA
151
A
ASP
152
n
150
ASP
152
A
LEU
153
n
151
LEU
153
A
LEU
154
n
152
LEU
154
A
SER
155
n
153
SER
155
A
ASN
156
n
154
ASN
156
A
TYR
157
n
155
TYR
157
A
ALA
158
n
156
ALA
158
A
LEU
159
n
157
LEU
159
A
GLN
160
n
158
GLN
160
A
ASN
161
n
159
ASN
161
A
VAL
162
n
160
VAL
162
A
MET
163
n
161
MET
163
A
ILE
164
n
162
ILE
164
A
SER
165
n
163
SER
165
A
ILE
166
n
164
ILE
166
A
LEU
167
n
165
LEU
167
A
ASN
168
n
166
ASN
168
A
PRO
169
n
167
PRO
169
A
VAL
170
n
168
VAL
170
A
ALA
171
n
169
ALA
171
A
SER
172
n
170
SER
172
A
SER
173
n
171
SER
173
A
LEU
174
n
172
LEU
174
A
LYS
175
n
173
LYS
175
A
TRP
176
n
174
TRP
176
A
ARG
177
n
175
ARG
177
A
CYS
178
n
176
CYS
178
A
PRO
179
n
177
PRO
179
A
PHE
180
n
178
PHE
180
A
PRO
181
n
179
PRO
181
A
ASP
182
n
180
ASP
182
A
GLN
183
n
181
GLN
183
A
TRP
184
n
182
TRP
184
A
ILE
185
n
183
ILE
185
A
LYS
186
n
184
LYS
186
A
ASP
187
n
185
ASP
187
A
PHE
188
n
186
PHE
188
A
TYR
189
n
187
TYR
189
A
ILE
190
n
188
ILE
190
A
PRO
191
n
189
PRO
191
A
HIS
192
n
190
HIS
192
A
GLY
193
n
191
GLY
193
A
ASN
194
n
192
ASN
194
A
LYS
195
n
193
LYS
195
A
MET
196
n
194
MET
196
A
LEU
197
n
195
LEU
197
A
GLN
198
n
196
GLN
198
A
PRO
199
n
197
PRO
199
A
PHE
200
n
198
PHE
200
A
ALA
201
n
199
ALA
201
A
PRO
202
n
200
PRO
202
A
SER
203
n
201
SER
203
A
TYR
204
n
202
TYR
204
A
SER
205
n
203
SER
205
A
ALA
206
n
204
ALA
206
A
GLU
207
n
205
GLU
207
A
MET
208
n
206
MET
208
A
ARG
209
n
207
ARG
209
A
LEU
210
n
208
LEU
210
A
LEU
211
n
209
LEU
211
A
SER
212
n
210
SER
212
A
ILE
213
n
211
ILE
213
A
TYR
214
n
212
TYR
214
A
THR
215
n
213
THR
215
A
GLY
216
n
214
GLY
216
A
GLU
217
n
215
GLU
217
A
ASN
218
n
216
ASN
218
A
MET
219
n
217
MET
219
A
ARG
220
n
218
ARG
220
A
LEU
221
n
219
LEU
221
A
THR
222
n
220
THR
222
A
ARG
223
n
221
ARG
223
A
VAL
224
n
222
VAL
224
A
THR
225
n
223
THR
225
A
LYS
226
n
224
LYS
226
A
SER
227
n
225
SER
227
A
ASP
228
n
226
ASP
228
A
ALA
229
n
227
ALA
229
A
VAL
230
n
228
VAL
230
A
ASN
231
n
229
ASN
231
A
TYR
232
n
230
TYR
232
A
GLU
233
n
231
GLU
233
A
LYS
234
n
232
LYS
234
A
LYS
235
n
233
LYS
235
A
MET
236
n
234
MET
236
A
TYR
237
n
235
TYR
237
A
TYR
238
n
236
TYR
238
A
LEU
239
n
237
LEU
239
A
ASN
240
n
238
ASN
240
A
LYS
241
n
239
LYS
241
A
ILE
242
n
240
ILE
242
A
VAL
243
n
241
VAL
243
A
ARG
244
n
242
ARG
244
A
ASN
245
n
243
ASN
245
A
LYS
246
n
244
LYS
246
A
VAL
247
n
245
VAL
247
A
VAL
248
n
246
VAL
248
A
VAL
249
n
247
VAL
249
A
ASN
250
n
248
ASN
250
A
PHE
251
n
249
PHE
251
A
ASP
252
n
250
ASP
252
A
TYR
253
n
251
TYR
253
A
PRO
254
n
252
PRO
254
A
ASN
255
n
253
ASN
255
A
GLN
256
n
254
GLN
256
A
GLU
257
n
255
GLU
257
A
TYR
258
n
256
TYR
258
A
ASP
259
n
257
ASP
259
A
TYR
260
n
258
TYR
260
A
PHE
261
n
259
PHE
261
A
HIS
262
n
260
HIS
262
A
MET
263
n
261
MET
263
A
TYR
264
n
262
TYR
264
A
PHE
265
n
263
PHE
265
A
MET
266
n
264
MET
266
A
LEU
267
n
265
LEU
267
A
ARG
268
n
266
ARG
268
A
THR
269
n
267
THR
269
A
VAL
270
n
268
VAL
270
A
TYR
271
n
269
TYR
271
A
CYS
272
n
270
CYS
272
A
ASN
273
n
271
ASN
273
A
LYS
274
n
272
LYS
274
A
THR
275
n
273
THR
275
A
PHE
276
n
274
PHE
276
A
PRO
277
n
275
PRO
277
A
THR
278
n
276
THR
278
A
THR
279
n
277
THR
279
A
LYS
280
n
278
LYS
280
A
ALA
281
n
279
ALA
281
A
LYS
282
n
280
LYS
282
A
VAL
283
n
281
VAL
283
A
LEU
284
n
282
LEU
284
A
PHE
285
n
283
PHE
285
A
LEU
286
n
284
LEU
286
A
GLN
287
n
285
GLN
287
A
GLN
288
n
286
GLN
288
A
SER
289
n
287
SER
289
A
ILE
290
n
288
ILE
290
A
PHE
291
n
289
PHE
291
A
ARG
292
n
290
ARG
292
A
PHE
293
n
291
PHE
293
A
LEU
294
n
292
LEU
294
A
ASN
295
n
293
ASN
295
A
ILE
296
n
294
ILE
296
A
PRO
297
n
295
PRO
297
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASN
194
B
O
ASN
192
A
N
LEU
211
B
N
LEU
209
A
O
MET
208
B
O
MET
206
A
N
TRP
176
B
N
TRP
174
A
O
ALA
171
B
O
ALA
169
A
N
LEU
135
B
N
LEU
133
A
O
ILE
134
B
O
ILE
132
A
N
THR
63
B
N
THR
61
A
O
ALA
62
B
O
ALA
60
A
N
LYS
90
B
N
LYS
88
A
O
TRP
91
B
O
TRP
89
A
N
THR
110
B
N
THR
108
A
O
PHE
188
B
O
PHE
186
A
N
VAL
224
B
N
VAL
222
1
A
CG
ARG
97
B
CG
ARG
95
1
Y
1
A
CD
ARG
97
B
CD
ARG
95
1
Y
1
A
NE
ARG
97
B
NE
ARG
95
1
Y
1
A
CZ
ARG
97
B
CZ
ARG
95
1
Y
1
A
NH1
ARG
97
B
NH1
ARG
95
1
Y
1
A
NH2
ARG
97
B
NH2
ARG
95
1
Y
1
A
LYS
142
B
LYS
140
1
Y
1
A
ARG
143
B
ARG
141
1
Y
1
A
GLY
144
B
GLY
142
1
Y
1
A
GLY
145
B
GLY
143
1
Y
1
A
ASN
146
B
ASN
144
1
Y
1
A
GLU
147
B
GLU
145
1
Y
1
B
A
405
0.051
SIDE CHAIN
1
-14.39
1.40
115.20
100.81
B
B
B
C5'
C4'
C3'
G
G
G
402
402
402
N
1
7.69
0.90
109.80
117.49
B
B
B
C5'
C4'
O4'
G
G
G
402
402
402
N
1
4.21
0.70
108.50
112.71
B
B
B
O4'
C1'
N9
G
G
G
402
402
402
N
1
4.42
0.50
113.10
117.52
B
B
B
N7
C8
N9
G
G
G
402
402
402
N
1
-4.52
0.40
106.40
101.88
B
B
B
C8
N9
C4
G
G
G
402
402
402
N
1
-5.17
0.80
123.70
118.53
B
B
B
C5
C6
N6
A
A
A
403
403
403
N
1
-5.48
0.70
101.30
95.82
B
B
B
C3'
C2'
C1'
A
A
A
405
405
405
N
1
-3.06
0.50
129.30
126.24
B
B
B
N1
C2
N3
A
A
A
405
405
405
N
1
4.62
0.70
108.50
113.12
B
B
B
O4'
C1'
N9
A
A
A
406
406
406
N
1
-3.30
0.40
105.80
102.50
B
B
B
C8
N9
C4
A
A
A
406
406
406
N
1
B
B
P
O5'
A
A
407
407
0.074
0.010
1.593
1.667
N
1
A
ASP
95
-173.10
148.18
1
A
ILE
102
-68.39
1.14
1
A
ARG
114
176.75
143.87
1
A
ASP
138
-167.11
25.09
1
A
SER
203
-33.00
-37.58
1
A
MET
219
171.32
-156.90
1
A
ARG
220
167.38
131.56
1
A
ILE
242
-93.85
-84.60
1
A
TYR
253
-173.37
145.87
13.00
SINGLE PHOSPHATE LINKS BETWEEN RESIDUES ARE
PHOSPHOROTHIOATE, I.E., M7GPPPG-PS-A-PS-A-PS-A-PS-A-PS-A.
PHOSPHOROTHIOLATES ARE LEFT AS PHOSPHATE IN THIS INITIAL
DEPOSITION.
0.2850000
0.2150000
0.2150000
2.800
8.000
9284
5.000
92.000
RANDOM
100000.000
0.0001
1
GROUP
FREE-R
2.000
MOLECULAR
PDB ENTRY 1VPT
2.800
8.000
0
2575
58
130
2387
0.010
1.70
1.500
2.000
2.000
2.000
27.00
2.700
20.000
1AV6
9755
2.000
0.095000000
1
20.0000
3.000
92.000
0.210000000
2.700
2.800
6.000
2.000
phasing
AMoRE
refinement
X-PLOR
3.851
data reduction
SMART
data scaling
SAINT
VACCINIA METHYLTRANSFERASE VP39 COMPLEXED WITH M7G CAPPED RNA HEXAMER AND S-ADENOSYLHOMOCYSTEINE
1
N
N
2
N
N
3
N
N
4
N
N
A
PHE
13
B
PHE
11
HELX_P
A
GLU
15
B
GLU
13
5
1
3
A
PRO
24
B
PRO
22
HELX_P
A
ASN
28
B
ASN
26
5
2
5
A
GLN
37
B
GLN
35
HELX_P
A
HIS
56
B
HIS
54
1
3
20
A
THR
73
B
THR
71
HELX_P
A
LEU
85
B
LEU
83
1
4
13
A
PRO
101
B
PRO
99
HELX_P
A
LEU
103
B
LEU
101
5
5
3
A
GLU
118
B
GLU
116
HELX_P
A
LEU
128
B
LEU
126
1
6
11
A
THR
150
B
THR
148
HELX_P
A
LEU
167
B
LEU
165
1
7
18
A
LYS
226
B
LYS
224
HELX_P
A
LYS
241
B
LYS
239
1
8
16
A
VAL
243
B
VAL
241
HELX_P
A
ASN
245
B
ASN
243
5
9
3
A
TYR
258
B
TYR
256
HELX_P
A
THR
269
B
THR
267
1
10
12
A
THR
279
B
THR
277
HELX_P
A
PHE
293
B
PHE
291
1
11
15
covale
1.620
one
B
G
402
A
O5'
G
1
1_555
B
MGT
408
C
PG
MGT
1_555
TRANSFERASE/RNA
SINGLE-STRANDED RNA, METHYLTRANSFERASE, RNA CAP, POLY(A) POLYMERASE, VACCINIA, MRNA PROCESSING, TRANSCRIPTION, COMPLEX (TRANSFERASE-RNA), TRANSFERASE-RNA complex
A
ALA
70
B
ALA
68
1
A
PRO
71
B
PRO
69
0.52
A
HIS
129
B
HIS
127
1
A
PRO
130
B
PRO
128
-0.89
PAP2_VACCW
UNP
2
3
P07617
VVSLDKPFMYFEEIDNELDYEPESANEVAKKLPYQGQLKLLLGELFFLSKLQRHGILDGATVVYIGSAPGTHIRYLRDHF
YNLGVIIKWMLIDGRHHDPILNGLRDVTLVTRFVDEEYLRSIKKQLHPSKIILISDVRSKRGGNEPSTADLLSNYALQNV
MISILNPVASSLKWRCPFPDQWIKDFYIPHGNKMLQPFAPSYSAEMRLLSIYTGENMRLTRVTKSDAVNYEKKMYYLNKI
VRNKVVVNFDYPNQEYDYFHMYFMLRTVYCNKTFPTTKAKVLFLQQSIFRFLNIP
1AV6
PDB
1
1AV6
3
297
1AV6
3
297
P07617
A
1
1
295
402
407
1AV6
402
407
1AV6
B
2
1
6
7
2
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
A
ASN
194
B
ASN
192
A
MET
196
B
MET
194
A
MET
208
B
MET
206
A
ILE
213
B
ILE
211
A
ALA
171
B
ALA
169
A
TRP
176
B
TRP
174
A
ILE
133
B
ILE
131
A
SER
137
B
SER
135
A
ALA
62
B
ALA
60
A
ILE
67
B
ILE
65
A
ILE
89
B
ILE
87
A
ASP
95
B
ASP
93
A
VAL
109
B
VAL
107
A
THR
113
B
THR
111
A
PHE
188
B
PHE
186
A
PRO
191
B
PRO
189
A
LEU
221
B
LEU
219
A
VAL
224
B
VAL
222
BINDING SITE FOR RESIDUE MGT B 408
B
MGT
408
Software
11
BINDING SITE FOR RESIDUE SAH A 400
A
SAH
400
Software
16
A
TYR
22
B
TYR
20
11
1_555
A
ALA
27
B
ALA
25
11
1_555
A
PRO
148
B
PRO
146
11
1_555
A
ARG
177
B
ARG
175
11
1_555
A
PHE
180
B
PHE
178
11
1_555
A
ASP
182
B
ASP
180
11
1_555
A
TYR
204
B
TYR
202
11
1_555
A
SER
205
B
SER
203
11
1_555
A
GLU
207
B
GLU
205
11
1_555
A
GLU
233
B
GLU
231
11
1_555
B
G
402
A
G
1
11
1_555
A
GLN
39
B
GLN
37
16
1_555
A
LEU
42
B
LEU
40
16
1_555
A
TYR
66
B
TYR
64
16
1_555
A
ILE
67
B
ILE
65
16
1_555
A
GLY
68
B
GLY
66
16
1_555
A
ALA
70
B
ALA
68
16
1_555
A
PRO
71
B
PRO
69
16
1_555
A
GLY
72
B
GLY
70
16
1_555
A
HIS
74
B
HIS
72
16
1_555
A
ASP
95
B
ASP
93
16
1_555
A
PHE
115
B
PHE
113
16
1_555
A
VAL
116
B
VAL
114
16
1_555
A
ASP
138
B
ASP
136
16
1_555
A
VAL
139
B
VAL
137
16
1_555
A
LEU
159
B
LEU
157
16
1_555
B
G
402
A
G
1
16
1_555
19
P 21 21 21