0.009242
0.005336
0.000000
0.000000
0.010672
0.000000
0.000000
0.000000
0.004470
0.00000
0.00000
0.00000
Arold, S.
Franken, P.
Dumas, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
120.00
108.200
108.200
223.700
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
5
1361
1372
10.1016/S0969-2126(97)00286-4
9351809
The crystal structure of HIV-1 Nef protein bound to the Fyn kinase SH3 domain suggests a role for this complex in altered T cell receptor signaling.
1997
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
85
931
Crystal Structure of the Conserved Core of HIV-1 Nef Complexed with a Src Family SH3 Domain
1996
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
3
340
The Solution Structure of HIV-1 Nef Reveals an Unexpected Fold and Permits Delineation of the Binding Surface for the SH3 Domain of HCK Tyrosine Protein Kinase
1996
10.2210/pdb1avz/pdb
pdb_00001avz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
TWO BENT MIRRORS
CCD
1996-10-04
PRINCETON 2K
SI(111)
M
x-ray
1
1.0373
1.0
BM02
ESRF
1.0373
SYNCHROTRON
ESRF BEAMLINE BM02
17568.723
NEGATIVE FACTOR
CONSERVED CORE DOMAIN
N-TERMINAL RESIDUES GS (PART OF A THROMBIN CLEAVAGE SITE)
2
man
polymer
6524.066
FYN TYROSINE KINASE
2.7.1.112
SRC-HOMOLOGY 3 DOMAIN
1
man
polymer
NEF, F-PROTEIN
SH3 DOMAIN
no
no
GSLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGVRY
PLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC
GSLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGVRY
PLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC
A,B
polypeptide(L)
no
no
TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV
TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
Escherichia
Escherichia coli
sample
BL21
HIV-1 NEF
11676
Human immunodeficiency virus 1
LAI ISOLATE
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PGEX-2T
human
Homo
Escherichia
Escherichia coli
sample
BL21
FYN TYROSINE KINASE
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PGEX-2T
1
4.2
70.
8.9
pH 8.9
diffrn_source
pdbx_database_status
diffrn_source
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Other
Data collection
Database references
Refinement description
1
0
1998-03-25
1
1
2008-03-24
1
2
2011-07-13
1
3
2018-04-04
1
4
2018-04-11
1
5
2023-08-02
_diffrn_source.type
_pdbx_database_status.process_site
_diffrn_source.pdbx_synchrotron_beamline
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Y
BNL
1997-09-23
REL
1EFN
PDB ENTRIES 1EFN AND 1SHF
PDB
experimental model
1SHF
PDB ENTRIES 1EFN AND 1SHF
PDB
experimental model
n
1
56
A
n
2
57
A
n
3
58
A
n
4
59
A
n
5
60
A
n
6
61
A
n
7
62
A
n
8
63
A
n
9
64
A
n
10
65
A
n
11
66
A
n
12
67
A
n
13
68
A
n
14
69
A
n
15
70
A
n
16
71
A
n
17
72
A
n
18
73
A
VAL
74
n
19
VAL
74
A
PRO
75
n
20
PRO
75
A
LEU
76
n
21
LEU
76
A
ARG
77
n
22
ARG
77
A
PRO
78
n
23
PRO
78
A
MET
79
n
24
MET
79
A
THR
80
n
25
THR
80
A
TYR
81
n
26
TYR
81
A
LYS
82
n
27
LYS
82
A
ALA
83
n
28
ALA
83
A
ALA
84
n
29
ALA
84
A
VAL
85
n
30
VAL
85
A
ASP
86
n
31
ASP
86
A
LEU
87
n
32
LEU
87
A
SER
88
n
33
SER
88
A
HIS
89
n
34
HIS
89
A
PHE
90
n
35
PHE
90
A
LEU
91
n
36
LEU
91
A
LYS
92
n
37
LYS
92
A
GLU
93
n
38
GLU
93
A
LYS
94
n
39
LYS
94
A
GLY
95
n
40
GLY
95
A
GLY
96
n
41
GLY
96
A
LEU
97
n
42
LEU
97
A
GLU
98
n
43
GLU
98
A
GLY
99
n
44
GLY
99
A
LEU
100
n
45
LEU
100
A
ILE
101
n
46
ILE
101
A
HIS
102
n
47
HIS
102
A
SER
103
n
48
SER
103
A
GLN
104
n
49
GLN
104
A
ARG
105
n
50
ARG
105
A
ARG
106
n
51
ARG
106
A
GLN
107
n
52
GLN
107
A
ASP
108
n
53
ASP
108
A
ILE
109
n
54
ILE
109
A
LEU
110
n
55
LEU
110
A
ASP
111
n
56
ASP
111
A
LEU
112
n
57
LEU
112
A
TRP
113
n
58
TRP
113
A
ILE
114
n
59
ILE
114
A
TYR
115
n
60
TYR
115
A
HIS
116
n
61
HIS
116
A
THR
117
n
62
THR
117
A
GLN
118
n
63
GLN
118
A
GLY
119
n
64
GLY
119
A
TYR
120
n
65
TYR
120
A
PHE
121
n
66
PHE
121
A
PRO
122
n
67
PRO
122
A
ASP
123
n
68
ASP
123
A
TRP
124
n
69
TRP
124
A
GLN
125
n
70
GLN
125
A
ASN
126
n
71
ASN
126
A
TYR
127
n
72
TYR
127
A
THR
128
n
73
THR
128
A
PRO
129
n
74
PRO
129
A
GLY
130
n
75
GLY
130
A
PRO
131
n
76
PRO
131
A
GLY
132
n
77
GLY
132
A
VAL
133
n
78
VAL
133
A
ARG
134
n
79
ARG
134
A
TYR
135
n
80
TYR
135
A
PRO
136
n
81
PRO
136
A
LEU
137
n
82
LEU
137
A
THR
138
n
83
THR
138
A
PHE
139
n
84
PHE
139
A
GLY
140
n
85
GLY
140
A
TRP
141
n
86
TRP
141
A
CYS
142
n
87
CYS
142
A
TYR
143
n
88
TYR
143
A
LYS
144
n
89
LYS
144
A
LEU
145
n
90
LEU
145
A
VAL
146
n
91
VAL
146
A
PRO
147
n
92
PRO
147
A
VAL
148
n
93
VAL
148
A
n
94
149
A
n
95
150
A
n
96
151
A
n
97
152
A
n
98
153
A
n
99
154
A
n
100
155
A
n
101
156
A
n
102
157
A
n
103
158
A
n
104
159
A
n
105
160
A
n
106
161
A
n
107
162
A
n
108
163
A
n
109
164
A
n
110
165
A
n
111
166
A
n
112
167
A
n
113
168
A
n
114
169
A
n
115
170
A
n
116
171
A
n
117
172
A
n
118
173
A
n
119
174
A
n
120
175
A
n
121
176
A
n
122
177
A
n
123
178
A
GLU
179
n
124
GLU
179
A
VAL
180
n
125
VAL
180
A
LEU
181
n
126
LEU
181
A
GLU
182
n
127
GLU
182
A
TRP
183
n
128
TRP
183
A
ARG
184
n
129
ARG
184
A
PHE
185
n
130
PHE
185
A
ASP
186
n
131
ASP
186
A
SER
187
n
132
SER
187
A
ARG
188
n
133
ARG
188
A
LEU
189
n
134
LEU
189
A
ALA
190
n
135
ALA
190
A
PHE
191
n
136
PHE
191
A
HIS
192
n
137
HIS
192
A
HIS
193
n
138
HIS
193
A
VAL
194
n
139
VAL
194
A
ALA
195
n
140
ALA
195
A
ARG
196
n
141
ARG
196
A
GLU
197
n
142
GLU
197
A
LEU
198
n
143
LEU
198
A
HIS
199
n
144
HIS
199
A
PRO
200
n
145
PRO
200
A
GLU
201
n
146
GLU
201
A
TYR
202
n
147
TYR
202
A
PHE
203
n
148
PHE
203
A
n
149
204
A
n
150
205
A
n
151
206
A
n
1
56
B
n
2
57
B
n
3
58
B
n
4
59
B
n
5
60
B
n
6
61
B
n
7
62
B
n
8
63
B
n
9
64
B
n
10
65
B
n
11
66
B
n
12
67
B
n
13
68
B
n
14
69
B
n
15
70
B
THR
71
n
16
THR
71
B
PRO
72
n
17
PRO
72
B
GLN
73
n
18
GLN
73
B
VAL
74
n
19
VAL
74
B
PRO
75
n
20
PRO
75
B
LEU
76
n
21
LEU
76
B
ARG
77
n
22
ARG
77
B
PRO
78
n
23
PRO
78
B
MET
79
n
24
MET
79
B
THR
80
n
25
THR
80
B
TYR
81
n
26
TYR
81
B
LYS
82
n
27
LYS
82
B
ALA
83
n
28
ALA
83
B
ALA
84
n
29
ALA
84
B
VAL
85
n
30
VAL
85
B
ASP
86
n
31
ASP
86
B
LEU
87
n
32
LEU
87
B
SER
88
n
33
SER
88
B
HIS
89
n
34
HIS
89
B
PHE
90
n
35
PHE
90
B
LEU
91
n
36
LEU
91
B
LYS
92
n
37
LYS
92
B
GLU
93
n
38
GLU
93
B
LYS
94
n
39
LYS
94
B
GLY
95
n
40
GLY
95
B
GLY
96
n
41
GLY
96
B
LEU
97
n
42
LEU
97
B
GLU
98
n
43
GLU
98
B
GLY
99
n
44
GLY
99
B
LEU
100
n
45
LEU
100
B
ILE
101
n
46
ILE
101
B
HIS
102
n
47
HIS
102
B
SER
103
n
48
SER
103
B
GLN
104
n
49
GLN
104
B
ARG
105
n
50
ARG
105
B
ARG
106
n
51
ARG
106
B
GLN
107
n
52
GLN
107
B
ASP
108
n
53
ASP
108
B
ILE
109
n
54
ILE
109
B
LEU
110
n
55
LEU
110
B
ASP
111
n
56
ASP
111
B
LEU
112
n
57
LEU
112
B
TRP
113
n
58
TRP
113
B
ILE
114
n
59
ILE
114
B
TYR
115
n
60
TYR
115
B
HIS
116
n
61
HIS
116
B
THR
117
n
62
THR
117
B
GLN
118
n
63
GLN
118
B
GLY
119
n
64
GLY
119
B
TYR
120
n
65
TYR
120
B
PHE
121
n
66
PHE
121
B
PRO
122
n
67
PRO
122
B
ASP
123
n
68
ASP
123
B
TRP
124
n
69
TRP
124
B
GLN
125
n
70
GLN
125
B
ASN
126
n
71
ASN
126
B
TYR
127
n
72
TYR
127
B
THR
128
n
73
THR
128
B
PRO
129
n
74
PRO
129
B
GLY
130
n
75
GLY
130
B
PRO
131
n
76
PRO
131
B
GLY
132
n
77
GLY
132
B
VAL
133
n
78
VAL
133
B
ARG
134
n
79
ARG
134
B
TYR
135
n
80
TYR
135
B
PRO
136
n
81
PRO
136
B
LEU
137
n
82
LEU
137
B
THR
138
n
83
THR
138
B
PHE
139
n
84
PHE
139
B
GLY
140
n
85
GLY
140
B
TRP
141
n
86
TRP
141
B
CYS
142
n
87
CYS
142
B
TYR
143
n
88
TYR
143
B
LYS
144
n
89
LYS
144
B
LEU
145
n
90
LEU
145
B
VAL
146
n
91
VAL
146
B
PRO
147
n
92
PRO
147
B
VAL
148
n
93
VAL
148
B
n
94
149
B
n
95
150
B
n
96
151
B
n
97
152
B
n
98
153
B
n
99
154
B
n
100
155
B
n
101
156
B
n
102
157
B
n
103
158
B
n
104
159
B
n
105
160
B
n
106
161
B
n
107
162
B
n
108
163
B
n
109
164
B
n
110
165
B
n
111
166
B
n
112
167
B
n
113
168
B
n
114
169
B
n
115
170
B
n
116
171
B
n
117
172
B
n
118
173
B
n
119
174
B
n
120
175
B
n
121
176
B
n
122
177
B
n
123
178
B
GLU
179
n
124
GLU
179
B
VAL
180
n
125
VAL
180
B
LEU
181
n
126
LEU
181
B
GLU
182
n
127
GLU
182
B
TRP
183
n
128
TRP
183
B
ARG
184
n
129
ARG
184
B
PHE
185
n
130
PHE
185
B
ASP
186
n
131
ASP
186
B
SER
187
n
132
SER
187
B
ARG
188
n
133
ARG
188
B
LEU
189
n
134
LEU
189
B
ALA
190
n
135
ALA
190
B
PHE
191
n
136
PHE
191
B
HIS
192
n
137
HIS
192
B
HIS
193
n
138
HIS
193
B
VAL
194
n
139
VAL
194
B
ALA
195
n
140
ALA
195
B
ARG
196
n
141
ARG
196
B
GLU
197
n
142
GLU
197
B
LEU
198
n
143
LEU
198
B
HIS
199
n
144
HIS
199
B
PRO
200
n
145
PRO
200
B
GLU
201
n
146
GLU
201
B
TYR
202
n
147
TYR
202
B
PHE
203
n
148
PHE
203
B
n
149
204
B
n
150
205
B
n
151
206
B
THR
85
n
1
THR
85
C
LEU
86
n
2
LEU
86
C
PHE
87
n
3
PHE
87
C
VAL
88
n
4
VAL
88
C
ALA
89
n
5
ALA
89
C
LEU
90
n
6
LEU
90
C
TYR
91
n
7
TYR
91
C
ASP
92
n
8
ASP
92
C
TYR
93
n
9
TYR
93
C
GLU
94
n
10
GLU
94
C
ALA
95
n
11
ALA
95
C
ARG
96
n
12
ARG
96
C
THR
97
n
13
THR
97
C
GLU
98
n
14
GLU
98
C
ASP
99
n
15
ASP
99
C
ASP
100
n
16
ASP
100
C
LEU
101
n
17
LEU
101
C
SER
102
n
18
SER
102
C
PHE
103
n
19
PHE
103
C
HIS
104
n
20
HIS
104
C
LYS
105
n
21
LYS
105
C
GLY
106
n
22
GLY
106
C
GLU
107
n
23
GLU
107
C
LYS
108
n
24
LYS
108
C
PHE
109
n
25
PHE
109
C
GLN
110
n
26
GLN
110
C
ILE
111
n
27
ILE
111
C
LEU
112
n
28
LEU
112
C
ASN
113
n
29
ASN
113
C
SER
114
n
30
SER
114
C
SER
115
n
31
SER
115
C
GLU
116
n
32
GLU
116
C
GLY
117
n
33
GLY
117
C
ASP
118
n
34
ASP
118
C
TRP
119
n
35
TRP
119
C
TRP
120
n
36
TRP
120
C
GLU
121
n
37
GLU
121
C
ALA
122
n
38
ALA
122
C
ARG
123
n
39
ARG
123
C
SER
124
n
40
SER
124
C
LEU
125
n
41
LEU
125
C
THR
126
n
42
THR
126
C
THR
127
n
43
THR
127
C
GLY
128
n
44
GLY
128
C
GLU
129
n
45
GLU
129
C
THR
130
n
46
THR
130
C
GLY
131
n
47
GLY
131
C
TYR
132
n
48
TYR
132
C
ILE
133
n
49
ILE
133
C
PRO
134
n
50
PRO
134
C
SER
135
n
51
SER
135
C
ASN
136
n
52
ASN
136
C
TYR
137
n
53
TYR
137
C
VAL
138
n
54
VAL
138
C
ALA
139
n
55
ALA
139
C
PRO
140
n
56
PRO
140
C
VAL
141
n
57
VAL
141
C
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
144
A
O
LYS
89
A
N
ARG
184
A
N
ARG
129
B
O
LYS
144
B
O
LYS
89
B
N
ARG
184
B
N
ARG
129
C
O
TRP
120
C
O
TRP
36
C
N
ILE
133
C
N
ILE
49
1
A
GLY
56
A
GLY
1
1
Y
1
A
SER
57
A
SER
2
1
Y
1
A
LEU
58
A
LEU
3
1
Y
1
A
GLU
59
A
GLU
4
1
Y
1
A
ALA
60
A
ALA
5
1
Y
1
A
GLN
61
A
GLN
6
1
Y
1
A
GLU
62
A
GLU
7
1
Y
1
A
GLU
63
A
GLU
8
1
Y
1
A
GLU
64
A
GLU
9
1
Y
1
A
GLU
65
A
GLU
10
1
Y
1
A
VAL
66
A
VAL
11
1
Y
1
A
GLY
67
A
GLY
12
1
Y
1
A
PHE
68
A
PHE
13
1
Y
1
A
PRO
69
A
PRO
14
1
Y
1
A
VAL
70
A
VAL
15
1
Y
1
A
THR
71
A
THR
16
1
Y
1
A
PRO
72
A
PRO
17
1
Y
1
A
GLN
73
A
GLN
18
1
Y
1
A
GLU
149
A
GLU
94
1
Y
1
A
PRO
150
A
PRO
95
1
Y
1
A
ASP
151
A
ASP
96
1
Y
1
A
LYS
152
A
LYS
97
1
Y
1
A
VAL
153
A
VAL
98
1
Y
1
A
GLU
154
A
GLU
99
1
Y
1
A
GLU
155
A
GLU
100
1
Y
1
A
ALA
156
A
ALA
101
1
Y
1
A
ASN
157
A
ASN
102
1
Y
1
A
LYS
158
A
LYS
103
1
Y
1
A
GLY
159
A
GLY
104
1
Y
1
A
GLU
160
A
GLU
105
1
Y
1
A
ASN
161
A
ASN
106
1
Y
1
A
THR
162
A
THR
107
1
Y
1
A
SER
163
A
SER
108
1
Y
1
A
LEU
164
A
LEU
109
1
Y
1
A
LEU
165
A
LEU
110
1
Y
1
A
HIS
166
A
HIS
111
1
Y
1
A
PRO
167
A
PRO
112
1
Y
1
A
VAL
168
A
VAL
113
1
Y
1
A
SER
169
A
SER
114
1
Y
1
A
LEU
170
A
LEU
115
1
Y
1
A
HIS
171
A
HIS
116
1
Y
1
A
GLY
172
A
GLY
117
1
Y
1
A
MET
173
A
MET
118
1
Y
1
A
ASP
174
A
ASP
119
1
Y
1
A
ASP
175
A
ASP
120
1
Y
1
A
PRO
176
A
PRO
121
1
Y
1
A
GLU
177
A
GLU
122
1
Y
1
A
ARG
178
A
ARG
123
1
Y
1
A
LYS
204
A
LYS
149
1
Y
1
A
ASN
205
A
ASN
150
1
Y
1
A
CYS
206
A
CYS
151
1
Y
1
B
GLY
56
B
GLY
1
1
Y
1
B
SER
57
B
SER
2
1
Y
1
B
LEU
58
B
LEU
3
1
Y
1
B
GLU
59
B
GLU
4
1
Y
1
B
ALA
60
B
ALA
5
1
Y
1
B
GLN
61
B
GLN
6
1
Y
1
B
GLU
62
B
GLU
7
1
Y
1
B
GLU
63
B
GLU
8
1
Y
1
B
GLU
64
B
GLU
9
1
Y
1
B
GLU
65
B
GLU
10
1
Y
1
B
VAL
66
B
VAL
11
1
Y
1
B
GLY
67
B
GLY
12
1
Y
1
B
PHE
68
B
PHE
13
1
Y
1
B
PRO
69
B
PRO
14
1
Y
1
B
VAL
70
B
VAL
15
1
Y
1
B
GLU
149
B
GLU
94
1
Y
1
B
PRO
150
B
PRO
95
1
Y
1
B
ASP
151
B
ASP
96
1
Y
1
B
LYS
152
B
LYS
97
1
Y
1
B
VAL
153
B
VAL
98
1
Y
1
B
GLU
154
B
GLU
99
1
Y
1
B
GLU
155
B
GLU
100
1
Y
1
B
ALA
156
B
ALA
101
1
Y
1
B
ASN
157
B
ASN
102
1
Y
1
B
LYS
158
B
LYS
103
1
Y
1
B
GLY
159
B
GLY
104
1
Y
1
B
GLU
160
B
GLU
105
1
Y
1
B
ASN
161
B
ASN
106
1
Y
1
B
THR
162
B
THR
107
1
Y
1
B
SER
163
B
SER
108
1
Y
1
B
LEU
164
B
LEU
109
1
Y
1
B
LEU
165
B
LEU
110
1
Y
1
B
HIS
166
B
HIS
111
1
Y
1
B
PRO
167
B
PRO
112
1
Y
1
B
VAL
168
B
VAL
113
1
Y
1
B
SER
169
B
SER
114
1
Y
1
B
LEU
170
B
LEU
115
1
Y
1
B
HIS
171
B
HIS
116
1
Y
1
B
GLY
172
B
GLY
117
1
Y
1
B
MET
173
B
MET
118
1
Y
1
B
ASP
174
B
ASP
119
1
Y
1
B
ASP
175
B
ASP
120
1
Y
1
B
PRO
176
B
PRO
121
1
Y
1
B
GLU
177
B
GLU
122
1
Y
1
B
ARG
178
B
ARG
123
1
Y
1
B
LYS
204
B
LYS
149
1
Y
1
B
ASN
205
B
ASN
150
1
Y
1
B
CYS
206
B
CYS
151
1
Y
1
11.65
1.50
119.30
130.95
A
A
A
C
N
CA
PHE
PRO
PRO
121
122
122
Y
1
A
MET
79
-68.12
97.24
1
A
PRO
122
-54.06
44.29
1
A
CYS
142
-87.92
36.00
1
A
ALA
195
-68.93
10.08
1
A
ARG
196
-132.38
-30.99
1
A
HIS
199
-117.88
68.55
1
A
TYR
202
-63.12
0.82
1
B
PRO
75
-49.28
162.08
1
B
LEU
110
-61.53
-73.62
1
B
PRO
122
-60.22
51.69
1
B
CYS
142
-76.01
25.50
1
B
LEU
198
-91.00
-70.49
1
B
TYR
202
-55.49
-0.77
1
C
LYS
105
-30.50
102.46
1
C
GLN
110
-169.51
112.76
1
C
ASN
113
-161.26
94.47
1
C
SER
115
-67.73
67.56
1
C
GLU
116
-170.69
-3.33
33.0
0.2700000
0.2200000
0.2200000
3.0
30.
11662
10.0
75.6
RANDOM
10000000.00
0.001
1
2.0
MOLECULAR REPLACEMENT
PDB ENTRIES 1EFN AND 1SHF
3.0
30.
0
2216
0
0
2216
0.010
1.4
24.1
1.21
3.0
25.0
1AVZ
14778
2.0
0.0670000
1
4.1
91.
model building
X-PLOR
3.8
refinement
X-PLOR
3.8
data reduction
XDS
data scaling
XSCALE
phasing
X-PLOR
3.8
V-1 NEF PROTEIN IN COMPLEX WITH WILD TYPE FYN SH3 DOMAIN
1
N
N
1
N
N
2
N
N
A
TYR
81
A
TYR
26
HELX_P
A
LYS
94
A
LYS
39
1
1
14
A
GLN
104
A
GLN
49
HELX_P
A
THR
117
A
THR
62
1
2
14
A
SER
187
A
SER
132
HELX_P
A
ALA
190
A
ALA
135
5
3
4
A
VAL
194
A
VAL
139
HELX_P
A
GLU
197
A
GLU
142
1
4
4
B
TYR
81
B
TYR
26
HELX_P
B
LYS
94
B
LYS
39
1
5
14
B
GLN
104
B
GLN
49
HELX_P
B
THR
117
B
THR
62
1
6
14
B
SER
187
B
SER
132
HELX_P
B
ALA
190
B
ALA
135
5
7
4
B
VAL
194
B
VAL
139
HELX_P
B
GLU
197
B
GLU
142
1
8
4
C
SER
135
C
SER
51
HELX_P
C
TYR
137
C
TYR
53
5
9
3
COMPLEX (MYRISTYLATION/TRANSFERASE)
COMPLEX (MYRISTYLATION-TRANSFERASE), GTP-BINDING, HIV-1, PHOSPHORYLATION, NEF, SH3 DOMAIN, FYN, TYROSINE KINASE, COMPLEX (MYRISTYLATION-TRANSFERASE) complex
A
GLY
130
A
GLY
75
1
A
PRO
131
A
PRO
76
0.11
B
GLY
130
B
GLY
75
1
B
PRO
131
B
PRO
76
-0.35
NEF_HV1BR
UNP
1
1
P03406
MGGKWSKSSVVGWPTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMT
YKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCYKLVPVEPDKVEEANKGE
NTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC
FYN_HUMAN
UNP
2
1
P06241
GCVQCKDKEATKLTEERDGSLNQSSGYRYGTDPTPQHYPSFGVTSIPNYNNFHAAGGQGLTVFGGVNSSSHTGTLRTRGG
TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAEEWYFGKLGRKDAER
QLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFETLQQLVQHYSERAAGLCCR
LVVPCHKGMPRLTDLSVKTKDVWEIPRESLQLIKRLGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSPESFLEEAQIMKKL
KHDKLVQLYAVVSEEPIYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGNG
LICKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVER
GYRMPCPQDCPISLHELMIHCWKKDPEERPTFEYLQSFLEDYFTATEPQYQPGENL
58
206
1AVZ
58
206
P03406
A
1
3
151
58
206
1AVZ
58
206
P03406
B
1
3
151
84
140
1AVZ
85
141
P06241
C
2
1
57
2
2
2
anti-parallel
anti-parallel
anti-parallel
A
TYR
143
A
TYR
88
A
PRO
147
A
PRO
92
A
LEU
181
A
LEU
126
A
PHE
185
A
PHE
130
B
TYR
143
B
TYR
88
B
PRO
147
B
PRO
92
B
LEU
181
B
LEU
126
B
PHE
185
B
PHE
130
C
TRP
119
C
TRP
35
C
ARG
123
C
ARG
39
C
THR
130
C
THR
46
C
PRO
134
C
PRO
50
179
P 65 2 2