0.009242 0.005336 0.000000 0.000000 0.010672 0.000000 0.000000 0.000000 0.004470 0.00000 0.00000 0.00000 Arold, S. Franken, P. Dumas, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 120.00 108.200 108.200 223.700 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 5 1361 1372 10.1016/S0969-2126(97)00286-4 9351809 The crystal structure of HIV-1 Nef protein bound to the Fyn kinase SH3 domain suggests a role for this complex in altered T cell receptor signaling. 1997 US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 85 931 Crystal Structure of the Conserved Core of HIV-1 Nef Complexed with a Src Family SH3 Domain 1996 US Nat.Struct.Biol. NSBIEW 2024 1072-8368 3 340 The Solution Structure of HIV-1 Nef Reveals an Unexpected Fold and Permits Delineation of the Binding Surface for the SH3 Domain of HCK Tyrosine Protein Kinase 1996 10.2210/pdb1avz/pdb pdb_00001avz 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 TWO BENT MIRRORS CCD 1996-10-04 PRINCETON 2K SI(111) M x-ray 1 1.0373 1.0 BM02 ESRF 1.0373 SYNCHROTRON ESRF BEAMLINE BM02 17568.723 NEGATIVE FACTOR CONSERVED CORE DOMAIN N-TERMINAL RESIDUES GS (PART OF A THROMBIN CLEAVAGE SITE) 2 man polymer 6524.066 FYN TYROSINE KINASE 2.7.1.112 SRC-HOMOLOGY 3 DOMAIN 1 man polymer NEF, F-PROTEIN SH3 DOMAIN no no GSLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGVRY PLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC GSLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGVRY PLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC A,B polypeptide(L) no no TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV TLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia Escherichia coli sample BL21 HIV-1 NEF 11676 Human immunodeficiency virus 1 LAI ISOLATE 469008 Escherichia coli BL21(DE3) BL21 (DE3) PGEX-2T human Homo Escherichia Escherichia coli sample BL21 FYN TYROSINE KINASE 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) BL21 (DE3) PGEX-2T 1 4.2 70. 8.9 pH 8.9 diffrn_source pdbx_database_status diffrn_source database_2 pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Other Data collection Database references Refinement description 1 0 1998-03-25 1 1 2008-03-24 1 2 2011-07-13 1 3 2018-04-04 1 4 2018-04-11 1 5 2023-08-02 _diffrn_source.type _pdbx_database_status.process_site _diffrn_source.pdbx_synchrotron_beamline _database_2.pdbx_DOI _database_2.pdbx_database_accession Y BNL 1997-09-23 REL 1EFN PDB ENTRIES 1EFN AND 1SHF PDB experimental model 1SHF PDB ENTRIES 1EFN AND 1SHF PDB experimental model n 1 56 A n 2 57 A n 3 58 A n 4 59 A n 5 60 A n 6 61 A n 7 62 A n 8 63 A n 9 64 A n 10 65 A n 11 66 A n 12 67 A n 13 68 A n 14 69 A n 15 70 A n 16 71 A n 17 72 A n 18 73 A VAL 74 n 19 VAL 74 A PRO 75 n 20 PRO 75 A LEU 76 n 21 LEU 76 A ARG 77 n 22 ARG 77 A PRO 78 n 23 PRO 78 A MET 79 n 24 MET 79 A THR 80 n 25 THR 80 A TYR 81 n 26 TYR 81 A LYS 82 n 27 LYS 82 A ALA 83 n 28 ALA 83 A ALA 84 n 29 ALA 84 A VAL 85 n 30 VAL 85 A ASP 86 n 31 ASP 86 A LEU 87 n 32 LEU 87 A SER 88 n 33 SER 88 A HIS 89 n 34 HIS 89 A PHE 90 n 35 PHE 90 A LEU 91 n 36 LEU 91 A LYS 92 n 37 LYS 92 A GLU 93 n 38 GLU 93 A LYS 94 n 39 LYS 94 A GLY 95 n 40 GLY 95 A GLY 96 n 41 GLY 96 A LEU 97 n 42 LEU 97 A GLU 98 n 43 GLU 98 A GLY 99 n 44 GLY 99 A LEU 100 n 45 LEU 100 A ILE 101 n 46 ILE 101 A HIS 102 n 47 HIS 102 A SER 103 n 48 SER 103 A GLN 104 n 49 GLN 104 A ARG 105 n 50 ARG 105 A ARG 106 n 51 ARG 106 A GLN 107 n 52 GLN 107 A ASP 108 n 53 ASP 108 A ILE 109 n 54 ILE 109 A LEU 110 n 55 LEU 110 A ASP 111 n 56 ASP 111 A LEU 112 n 57 LEU 112 A TRP 113 n 58 TRP 113 A ILE 114 n 59 ILE 114 A TYR 115 n 60 TYR 115 A HIS 116 n 61 HIS 116 A THR 117 n 62 THR 117 A GLN 118 n 63 GLN 118 A GLY 119 n 64 GLY 119 A TYR 120 n 65 TYR 120 A PHE 121 n 66 PHE 121 A PRO 122 n 67 PRO 122 A ASP 123 n 68 ASP 123 A TRP 124 n 69 TRP 124 A GLN 125 n 70 GLN 125 A ASN 126 n 71 ASN 126 A TYR 127 n 72 TYR 127 A THR 128 n 73 THR 128 A PRO 129 n 74 PRO 129 A GLY 130 n 75 GLY 130 A PRO 131 n 76 PRO 131 A GLY 132 n 77 GLY 132 A VAL 133 n 78 VAL 133 A ARG 134 n 79 ARG 134 A TYR 135 n 80 TYR 135 A PRO 136 n 81 PRO 136 A LEU 137 n 82 LEU 137 A THR 138 n 83 THR 138 A PHE 139 n 84 PHE 139 A GLY 140 n 85 GLY 140 A TRP 141 n 86 TRP 141 A CYS 142 n 87 CYS 142 A TYR 143 n 88 TYR 143 A LYS 144 n 89 LYS 144 A LEU 145 n 90 LEU 145 A VAL 146 n 91 VAL 146 A PRO 147 n 92 PRO 147 A VAL 148 n 93 VAL 148 A n 94 149 A n 95 150 A n 96 151 A n 97 152 A n 98 153 A n 99 154 A n 100 155 A n 101 156 A n 102 157 A n 103 158 A n 104 159 A n 105 160 A n 106 161 A n 107 162 A n 108 163 A n 109 164 A n 110 165 A n 111 166 A n 112 167 A n 113 168 A n 114 169 A n 115 170 A n 116 171 A n 117 172 A n 118 173 A n 119 174 A n 120 175 A n 121 176 A n 122 177 A n 123 178 A GLU 179 n 124 GLU 179 A VAL 180 n 125 VAL 180 A LEU 181 n 126 LEU 181 A GLU 182 n 127 GLU 182 A TRP 183 n 128 TRP 183 A ARG 184 n 129 ARG 184 A PHE 185 n 130 PHE 185 A ASP 186 n 131 ASP 186 A SER 187 n 132 SER 187 A ARG 188 n 133 ARG 188 A LEU 189 n 134 LEU 189 A ALA 190 n 135 ALA 190 A PHE 191 n 136 PHE 191 A HIS 192 n 137 HIS 192 A HIS 193 n 138 HIS 193 A VAL 194 n 139 VAL 194 A ALA 195 n 140 ALA 195 A ARG 196 n 141 ARG 196 A GLU 197 n 142 GLU 197 A LEU 198 n 143 LEU 198 A HIS 199 n 144 HIS 199 A PRO 200 n 145 PRO 200 A GLU 201 n 146 GLU 201 A TYR 202 n 147 TYR 202 A PHE 203 n 148 PHE 203 A n 149 204 A n 150 205 A n 151 206 A n 1 56 B n 2 57 B n 3 58 B n 4 59 B n 5 60 B n 6 61 B n 7 62 B n 8 63 B n 9 64 B n 10 65 B n 11 66 B n 12 67 B n 13 68 B n 14 69 B n 15 70 B THR 71 n 16 THR 71 B PRO 72 n 17 PRO 72 B GLN 73 n 18 GLN 73 B VAL 74 n 19 VAL 74 B PRO 75 n 20 PRO 75 B LEU 76 n 21 LEU 76 B ARG 77 n 22 ARG 77 B PRO 78 n 23 PRO 78 B MET 79 n 24 MET 79 B THR 80 n 25 THR 80 B TYR 81 n 26 TYR 81 B LYS 82 n 27 LYS 82 B ALA 83 n 28 ALA 83 B ALA 84 n 29 ALA 84 B VAL 85 n 30 VAL 85 B ASP 86 n 31 ASP 86 B LEU 87 n 32 LEU 87 B SER 88 n 33 SER 88 B HIS 89 n 34 HIS 89 B PHE 90 n 35 PHE 90 B LEU 91 n 36 LEU 91 B LYS 92 n 37 LYS 92 B GLU 93 n 38 GLU 93 B LYS 94 n 39 LYS 94 B GLY 95 n 40 GLY 95 B GLY 96 n 41 GLY 96 B LEU 97 n 42 LEU 97 B GLU 98 n 43 GLU 98 B GLY 99 n 44 GLY 99 B LEU 100 n 45 LEU 100 B ILE 101 n 46 ILE 101 B HIS 102 n 47 HIS 102 B SER 103 n 48 SER 103 B GLN 104 n 49 GLN 104 B ARG 105 n 50 ARG 105 B ARG 106 n 51 ARG 106 B GLN 107 n 52 GLN 107 B ASP 108 n 53 ASP 108 B ILE 109 n 54 ILE 109 B LEU 110 n 55 LEU 110 B ASP 111 n 56 ASP 111 B LEU 112 n 57 LEU 112 B TRP 113 n 58 TRP 113 B ILE 114 n 59 ILE 114 B TYR 115 n 60 TYR 115 B HIS 116 n 61 HIS 116 B THR 117 n 62 THR 117 B GLN 118 n 63 GLN 118 B GLY 119 n 64 GLY 119 B TYR 120 n 65 TYR 120 B PHE 121 n 66 PHE 121 B PRO 122 n 67 PRO 122 B ASP 123 n 68 ASP 123 B TRP 124 n 69 TRP 124 B GLN 125 n 70 GLN 125 B ASN 126 n 71 ASN 126 B TYR 127 n 72 TYR 127 B THR 128 n 73 THR 128 B PRO 129 n 74 PRO 129 B GLY 130 n 75 GLY 130 B PRO 131 n 76 PRO 131 B GLY 132 n 77 GLY 132 B VAL 133 n 78 VAL 133 B ARG 134 n 79 ARG 134 B TYR 135 n 80 TYR 135 B PRO 136 n 81 PRO 136 B LEU 137 n 82 LEU 137 B THR 138 n 83 THR 138 B PHE 139 n 84 PHE 139 B GLY 140 n 85 GLY 140 B TRP 141 n 86 TRP 141 B CYS 142 n 87 CYS 142 B TYR 143 n 88 TYR 143 B LYS 144 n 89 LYS 144 B LEU 145 n 90 LEU 145 B VAL 146 n 91 VAL 146 B PRO 147 n 92 PRO 147 B VAL 148 n 93 VAL 148 B n 94 149 B n 95 150 B n 96 151 B n 97 152 B n 98 153 B n 99 154 B n 100 155 B n 101 156 B n 102 157 B n 103 158 B n 104 159 B n 105 160 B n 106 161 B n 107 162 B n 108 163 B n 109 164 B n 110 165 B n 111 166 B n 112 167 B n 113 168 B n 114 169 B n 115 170 B n 116 171 B n 117 172 B n 118 173 B n 119 174 B n 120 175 B n 121 176 B n 122 177 B n 123 178 B GLU 179 n 124 GLU 179 B VAL 180 n 125 VAL 180 B LEU 181 n 126 LEU 181 B GLU 182 n 127 GLU 182 B TRP 183 n 128 TRP 183 B ARG 184 n 129 ARG 184 B PHE 185 n 130 PHE 185 B ASP 186 n 131 ASP 186 B SER 187 n 132 SER 187 B ARG 188 n 133 ARG 188 B LEU 189 n 134 LEU 189 B ALA 190 n 135 ALA 190 B PHE 191 n 136 PHE 191 B HIS 192 n 137 HIS 192 B HIS 193 n 138 HIS 193 B VAL 194 n 139 VAL 194 B ALA 195 n 140 ALA 195 B ARG 196 n 141 ARG 196 B GLU 197 n 142 GLU 197 B LEU 198 n 143 LEU 198 B HIS 199 n 144 HIS 199 B PRO 200 n 145 PRO 200 B GLU 201 n 146 GLU 201 B TYR 202 n 147 TYR 202 B PHE 203 n 148 PHE 203 B n 149 204 B n 150 205 B n 151 206 B THR 85 n 1 THR 85 C LEU 86 n 2 LEU 86 C PHE 87 n 3 PHE 87 C VAL 88 n 4 VAL 88 C ALA 89 n 5 ALA 89 C LEU 90 n 6 LEU 90 C TYR 91 n 7 TYR 91 C ASP 92 n 8 ASP 92 C TYR 93 n 9 TYR 93 C GLU 94 n 10 GLU 94 C ALA 95 n 11 ALA 95 C ARG 96 n 12 ARG 96 C THR 97 n 13 THR 97 C GLU 98 n 14 GLU 98 C ASP 99 n 15 ASP 99 C ASP 100 n 16 ASP 100 C LEU 101 n 17 LEU 101 C SER 102 n 18 SER 102 C PHE 103 n 19 PHE 103 C HIS 104 n 20 HIS 104 C LYS 105 n 21 LYS 105 C GLY 106 n 22 GLY 106 C GLU 107 n 23 GLU 107 C LYS 108 n 24 LYS 108 C PHE 109 n 25 PHE 109 C GLN 110 n 26 GLN 110 C ILE 111 n 27 ILE 111 C LEU 112 n 28 LEU 112 C ASN 113 n 29 ASN 113 C SER 114 n 30 SER 114 C SER 115 n 31 SER 115 C GLU 116 n 32 GLU 116 C GLY 117 n 33 GLY 117 C ASP 118 n 34 ASP 118 C TRP 119 n 35 TRP 119 C TRP 120 n 36 TRP 120 C GLU 121 n 37 GLU 121 C ALA 122 n 38 ALA 122 C ARG 123 n 39 ARG 123 C SER 124 n 40 SER 124 C LEU 125 n 41 LEU 125 C THR 126 n 42 THR 126 C THR 127 n 43 THR 127 C GLY 128 n 44 GLY 128 C GLU 129 n 45 GLU 129 C THR 130 n 46 THR 130 C GLY 131 n 47 GLY 131 C TYR 132 n 48 TYR 132 C ILE 133 n 49 ILE 133 C PRO 134 n 50 PRO 134 C SER 135 n 51 SER 135 C ASN 136 n 52 ASN 136 C TYR 137 n 53 TYR 137 C VAL 138 n 54 VAL 138 C ALA 139 n 55 ALA 139 C PRO 140 n 56 PRO 140 C VAL 141 n 57 VAL 141 C author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LYS 144 A O LYS 89 A N ARG 184 A N ARG 129 B O LYS 144 B O LYS 89 B N ARG 184 B N ARG 129 C O TRP 120 C O TRP 36 C N ILE 133 C N ILE 49 1 A GLY 56 A GLY 1 1 Y 1 A SER 57 A SER 2 1 Y 1 A LEU 58 A LEU 3 1 Y 1 A GLU 59 A GLU 4 1 Y 1 A ALA 60 A ALA 5 1 Y 1 A GLN 61 A GLN 6 1 Y 1 A GLU 62 A GLU 7 1 Y 1 A GLU 63 A GLU 8 1 Y 1 A GLU 64 A GLU 9 1 Y 1 A GLU 65 A GLU 10 1 Y 1 A VAL 66 A VAL 11 1 Y 1 A GLY 67 A GLY 12 1 Y 1 A PHE 68 A PHE 13 1 Y 1 A PRO 69 A PRO 14 1 Y 1 A VAL 70 A VAL 15 1 Y 1 A THR 71 A THR 16 1 Y 1 A PRO 72 A PRO 17 1 Y 1 A GLN 73 A GLN 18 1 Y 1 A GLU 149 A GLU 94 1 Y 1 A PRO 150 A PRO 95 1 Y 1 A ASP 151 A ASP 96 1 Y 1 A LYS 152 A LYS 97 1 Y 1 A VAL 153 A VAL 98 1 Y 1 A GLU 154 A GLU 99 1 Y 1 A GLU 155 A GLU 100 1 Y 1 A ALA 156 A ALA 101 1 Y 1 A ASN 157 A ASN 102 1 Y 1 A LYS 158 A LYS 103 1 Y 1 A GLY 159 A GLY 104 1 Y 1 A GLU 160 A GLU 105 1 Y 1 A ASN 161 A ASN 106 1 Y 1 A THR 162 A THR 107 1 Y 1 A SER 163 A SER 108 1 Y 1 A LEU 164 A LEU 109 1 Y 1 A LEU 165 A LEU 110 1 Y 1 A HIS 166 A HIS 111 1 Y 1 A PRO 167 A PRO 112 1 Y 1 A VAL 168 A VAL 113 1 Y 1 A SER 169 A SER 114 1 Y 1 A LEU 170 A LEU 115 1 Y 1 A HIS 171 A HIS 116 1 Y 1 A GLY 172 A GLY 117 1 Y 1 A MET 173 A MET 118 1 Y 1 A ASP 174 A ASP 119 1 Y 1 A ASP 175 A ASP 120 1 Y 1 A PRO 176 A PRO 121 1 Y 1 A GLU 177 A GLU 122 1 Y 1 A ARG 178 A ARG 123 1 Y 1 A LYS 204 A LYS 149 1 Y 1 A ASN 205 A ASN 150 1 Y 1 A CYS 206 A CYS 151 1 Y 1 B GLY 56 B GLY 1 1 Y 1 B SER 57 B SER 2 1 Y 1 B LEU 58 B LEU 3 1 Y 1 B GLU 59 B GLU 4 1 Y 1 B ALA 60 B ALA 5 1 Y 1 B GLN 61 B GLN 6 1 Y 1 B GLU 62 B GLU 7 1 Y 1 B GLU 63 B GLU 8 1 Y 1 B GLU 64 B GLU 9 1 Y 1 B GLU 65 B GLU 10 1 Y 1 B VAL 66 B VAL 11 1 Y 1 B GLY 67 B GLY 12 1 Y 1 B PHE 68 B PHE 13 1 Y 1 B PRO 69 B PRO 14 1 Y 1 B VAL 70 B VAL 15 1 Y 1 B GLU 149 B GLU 94 1 Y 1 B PRO 150 B PRO 95 1 Y 1 B ASP 151 B ASP 96 1 Y 1 B LYS 152 B LYS 97 1 Y 1 B VAL 153 B VAL 98 1 Y 1 B GLU 154 B GLU 99 1 Y 1 B GLU 155 B GLU 100 1 Y 1 B ALA 156 B ALA 101 1 Y 1 B ASN 157 B ASN 102 1 Y 1 B LYS 158 B LYS 103 1 Y 1 B GLY 159 B GLY 104 1 Y 1 B GLU 160 B GLU 105 1 Y 1 B ASN 161 B ASN 106 1 Y 1 B THR 162 B THR 107 1 Y 1 B SER 163 B SER 108 1 Y 1 B LEU 164 B LEU 109 1 Y 1 B LEU 165 B LEU 110 1 Y 1 B HIS 166 B HIS 111 1 Y 1 B PRO 167 B PRO 112 1 Y 1 B VAL 168 B VAL 113 1 Y 1 B SER 169 B SER 114 1 Y 1 B LEU 170 B LEU 115 1 Y 1 B HIS 171 B HIS 116 1 Y 1 B GLY 172 B GLY 117 1 Y 1 B MET 173 B MET 118 1 Y 1 B ASP 174 B ASP 119 1 Y 1 B ASP 175 B ASP 120 1 Y 1 B PRO 176 B PRO 121 1 Y 1 B GLU 177 B GLU 122 1 Y 1 B ARG 178 B ARG 123 1 Y 1 B LYS 204 B LYS 149 1 Y 1 B ASN 205 B ASN 150 1 Y 1 B CYS 206 B CYS 151 1 Y 1 11.65 1.50 119.30 130.95 A A A C N CA PHE PRO PRO 121 122 122 Y 1 A MET 79 -68.12 97.24 1 A PRO 122 -54.06 44.29 1 A CYS 142 -87.92 36.00 1 A ALA 195 -68.93 10.08 1 A ARG 196 -132.38 -30.99 1 A HIS 199 -117.88 68.55 1 A TYR 202 -63.12 0.82 1 B PRO 75 -49.28 162.08 1 B LEU 110 -61.53 -73.62 1 B PRO 122 -60.22 51.69 1 B CYS 142 -76.01 25.50 1 B LEU 198 -91.00 -70.49 1 B TYR 202 -55.49 -0.77 1 C LYS 105 -30.50 102.46 1 C GLN 110 -169.51 112.76 1 C ASN 113 -161.26 94.47 1 C SER 115 -67.73 67.56 1 C GLU 116 -170.69 -3.33 33.0 0.2700000 0.2200000 0.2200000 3.0 30. 11662 10.0 75.6 RANDOM 10000000.00 0.001 1 2.0 MOLECULAR REPLACEMENT PDB ENTRIES 1EFN AND 1SHF 3.0 30. 0 2216 0 0 2216 0.010 1.4 24.1 1.21 3.0 25.0 1AVZ 14778 2.0 0.0670000 1 4.1 91. model building X-PLOR 3.8 refinement X-PLOR 3.8 data reduction XDS data scaling XSCALE phasing X-PLOR 3.8 V-1 NEF PROTEIN IN COMPLEX WITH WILD TYPE FYN SH3 DOMAIN 1 N N 1 N N 2 N N A TYR 81 A TYR 26 HELX_P A LYS 94 A LYS 39 1 1 14 A GLN 104 A GLN 49 HELX_P A THR 117 A THR 62 1 2 14 A SER 187 A SER 132 HELX_P A ALA 190 A ALA 135 5 3 4 A VAL 194 A VAL 139 HELX_P A GLU 197 A GLU 142 1 4 4 B TYR 81 B TYR 26 HELX_P B LYS 94 B LYS 39 1 5 14 B GLN 104 B GLN 49 HELX_P B THR 117 B THR 62 1 6 14 B SER 187 B SER 132 HELX_P B ALA 190 B ALA 135 5 7 4 B VAL 194 B VAL 139 HELX_P B GLU 197 B GLU 142 1 8 4 C SER 135 C SER 51 HELX_P C TYR 137 C TYR 53 5 9 3 COMPLEX (MYRISTYLATION/TRANSFERASE) COMPLEX (MYRISTYLATION-TRANSFERASE), GTP-BINDING, HIV-1, PHOSPHORYLATION, NEF, SH3 DOMAIN, FYN, TYROSINE KINASE, COMPLEX (MYRISTYLATION-TRANSFERASE) complex A GLY 130 A GLY 75 1 A PRO 131 A PRO 76 0.11 B GLY 130 B GLY 75 1 B PRO 131 B PRO 76 -0.35 NEF_HV1BR UNP 1 1 P03406 MGGKWSKSSVVGWPTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMT YKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCYKLVPVEPDKVEEANKGE NTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC FYN_HUMAN UNP 2 1 P06241 GCVQCKDKEATKLTEERDGSLNQSSGYRYGTDPTPQHYPSFGVTSIPNYNNFHAAGGQGLTVFGGVNSSSHTGTLRTRGG TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQAEEWYFGKLGRKDAER QLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFETLQQLVQHYSERAAGLCCR LVVPCHKGMPRLTDLSVKTKDVWEIPRESLQLIKRLGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSPESFLEEAQIMKKL KHDKLVQLYAVVSEEPIYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGNG LICKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVER GYRMPCPQDCPISLHELMIHCWKKDPEERPTFEYLQSFLEDYFTATEPQYQPGENL 58 206 1AVZ 58 206 P03406 A 1 3 151 58 206 1AVZ 58 206 P03406 B 1 3 151 84 140 1AVZ 85 141 P06241 C 2 1 57 2 2 2 anti-parallel anti-parallel anti-parallel A TYR 143 A TYR 88 A PRO 147 A PRO 92 A LEU 181 A LEU 126 A PHE 185 A PHE 130 B TYR 143 B TYR 88 B PRO 147 B PRO 92 B LEU 181 B LEU 126 B PHE 185 B PHE 130 C TRP 119 C TRP 35 C ARG 123 C ARG 39 C THR 130 C THR 46 C PRO 134 C PRO 50 179 P 65 2 2