1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Lin, C.H.
Patel, D.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
ADENOSINE MONOPHOSPHATE
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
UK
Chem.Biol.
CBOLE2
2050
1074-5521
4
817
832
10.1016/S1074-5521(97)90115-0
9384529
Structural basis of DNA folding and recognition in an AMP-DNA aptamer complex: distinct architectures but common recognition motifs for DNA and RNA aptamers complexed to AMP.
1997
10.2210/pdb1aw4/pdb
pdb_00001aw4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
8502.469
ATP-BINDING DNA APTAMER
1
syn
polymer
347.221
ADENOSINE MONOPHOSPHATE
2
syn
non-polymer
no
no
(DA)(DC)(DC)(DT)(DG)(DG)(DG)(DG)(DG)(DA)(DG)(DT)(DA)(DT)(DT)(DG)(DC)(DG)(DG)(DA)
(DG)(DG)(DA)(DA)(DG)(DG)(DT)
ACCTGGGGGAGTATTGCGGAGGAAGGT
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
3.572
1
20
A
1
A
27
-5.927
A_DA1:DT27_A
1
-2.964
-0.332
0.143
-0.163
-1.144
1
19
A
2
A
26
-3.612
A_DC2:DG26_A
2
-5.347
0.641
0.164
-0.386
-1.952
1
19
A
3
A
25
0.329
A_DC3:DG25_A
3
0.329
0.334
0.194
-0.242
-2.422
1
20
A
4
A
24
-2.008
A_DT4:DA24_A
4
-4.073
0.104
-0.132
-0.149
6.078
9
11
A
5
A
23
3.007
A_DG5:DA23_A
5
-10.927
6.478
0.121
-3.972
-15.202
7
A
6
A
21
-119.519
A_DG6:DG21_A
6
-7.275
-4.531
0.481
0.592
10.482
7
A
8
A
19
-123.909
A_DG8:DG19_A
7
-2.653
5.136
0.360
0.166
-0.142
10
11
A
10
A
18
-0.409
A_DA10:DG18_A
8
-12.699
-6.428
-0.160
-4.591
5.288
1
19
A
11
A
17
4.674
A_DG11:DC17_A
9
-1.832
-1.129
-0.062
-0.399
10.786
1
28
A
12
A
16
-2.753
A_DT12:DG16_A
10
-0.540
1.755
0.186
-0.501
3.130
35.540
A
A
1
2
-4.685
A
A
27
26
3.118
-2.857
-0.385
-0.174
AA_DA1DC2:DG26DT27_AA
1
-0.856
1.405
35.418
0.114
0.511
2.993
42.332
A
A
2
3
-1.240
A
A
26
25
2.998
-0.895
0.635
-0.572
AA_DC2DC3:DG25DG26_AA
2
-1.106
1.532
42.309
-0.708
-0.983
2.978
29.518
A
A
3
4
7.738
A
A
25
24
3.013
3.915
0.611
-0.518
AA_DC3DT4:DA24DG25_AA
3
4.707
-9.304
28.890
-1.788
-0.272
3.176
55.868
A
A
4
5
5.685
A
A
24
23
3.146
5.320
0.721
0.539
AA_DT4DG5:DA23DA24_AA
4
-0.473
0.506
55.633
0.279
-0.796
1.303
51.285
A
A
6
8
-29.586
A
A
21
19
3.235
-24.605
-1.745
2.935
AA_DG6DG8:DG19DG21_AA
5
6.678
-8.030
44.876
4.659
2.360
3.166
51.413
A
A
10
11
0.930
A
A
18
17
3.163
0.807
0.134
0.163
AA_DA10DG11:DC17DG18_AA
6
0.337
-0.388
51.406
0.134
-0.132
2.947
45.442
A
A
11
12
3.727
A
A
17
16
2.953
2.878
0.201
-0.011
AA_DG11DT12:DG16DC17_AA
7
0.175
-0.226
45.356
-0.244
-0.247
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1998-04-15
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1997-10-09
REL
AMP
ADENOSINE MONOPHOSPHATE
LEAST TOTAL ENERGY, NOE VIOLATION, VDW
21
7
NOESY
TOCSY
COSY
1H-13C HMQC
6.35
278
K
REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.
DISTANCE GEOMETRY AND DISTANCE RESTRAINED MD
BRUNGER
refinement
X-PLOR
3.1
structure solution
XVNMR
structure solution
X-PLOR
600
Varian
VARIAN INOVA 600
AMP
1
2
AMP
AMP
28
A
AMP
2
2
AMP
AMP
29
A
A
1
n
1
DA
1
A
C
2
n
2
DC
2
A
C
3
n
3
DC
3
A
T
4
n
4
DT
4
A
G
5
n
5
DG
5
A
G
6
n
6
DG
6
A
G
7
n
7
DG
7
A
G
8
n
8
DG
8
A
G
9
n
9
DG
9
A
A
10
n
10
DA
10
A
G
11
n
11
DG
11
A
T
12
n
12
DT
12
A
A
13
n
13
DA
13
A
T
14
n
14
DT
14
A
T
15
n
15
DT
15
A
G
16
n
16
DG
16
A
C
17
n
17
DC
17
A
G
18
n
18
DG
18
A
G
19
n
19
DG
19
A
A
20
n
20
DA
20
A
G
21
n
21
DG
21
A
G
22
n
22
DG
22
A
A
23
n
23
DA
23
A
A
24
n
24
DA
24
A
G
25
n
25
DG
25
A
G
26
n
26
DG
26
A
T
27
n
27
DT
27
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
H22
OP1
DG
DG
7
9
1.51
2
A
A
HO2'
O2P
AMP
AMP
28
29
1.46
2
A
A
HO3'
O2P
AMP
AMP
28
29
1.48
2
A
A
H61
OP2
DA
DG
10
19
1.52
2
A
A
OP2
H1
DG
DG
6
22
1.54
3
A
A
H22
OP1
DG
DG
7
9
1.51
5
A
A
O4'
H72
DT
DT
14
15
1.45
5
A
A
OP2
H1
DG
DG
6
22
1.59
6
A
A
O3P
HO2'
AMP
AMP
28
29
1.42
6
A
A
HO2'
O2P
AMP
AMP
28
29
1.49
6
A
A
O3P
HO3'
AMP
AMP
28
29
1.55
7
A
A
OP2
H1
DG
DG
6
22
1.54
1
-4.63
0.70
102.20
97.57
A
A
A
C4'
C3'
C2'
DA
DA
DA
1
1
1
N
1
-4.39
0.70
102.20
97.81
A
A
A
C4'
C3'
C2'
DC
DC
DC
2
2
2
N
1
4.08
0.30
108.30
112.38
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
5.44
0.60
106.00
111.44
A
A
A
O4'
C4'
C3'
DC
DC
DC
3
3
3
N
1
7.37
1.20
102.50
109.87
A
A
A
C3'
C2'
C1'
DC
DC
DC
3
3
3
N
1
2.69
0.30
108.30
110.99
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
-5.71
0.60
122.90
117.19
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
1
-5.76
0.80
105.90
100.14
A
A
A
O4'
C1'
C2'
DG
DG
DG
5
5
5
N
1
3.20
0.30
108.30
111.50
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
1
-5.16
0.70
108.00
102.84
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
2.99
0.30
108.30
111.29
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
1
8.30
1.20
119.70
128.00
A
A
A
C3'
O3'
P
DG
DG
DG
8
8
9
Y
1
5.79
0.30
108.30
114.09
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
2.93
0.40
105.40
108.33
A
A
A
N9
C4
C5
DG
DG
DG
9
9
9
N
1
-7.25
0.80
105.90
98.65
A
A
A
O4'
C1'
C2'
DA
DA
DA
10
10
10
N
1
8.25
1.20
119.70
127.95
A
A
A
C3'
O3'
P
DA
DA
DG
10
10
11
Y
1
-6.42
1.00
110.10
103.68
A
A
A
C1'
O4'
C4'
DG
DG
DG
11
11
11
N
1
2.42
0.30
108.30
110.72
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
1
-8.09
0.70
102.20
94.11
A
A
A
C4'
C3'
C2'
DT
DT
DT
12
12
12
N
1
7.08
0.30
108.30
115.38
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
1
-4.87
0.60
122.90
118.03
A
A
A
C6
C5
C7
DT
DT
DT
12
12
12
N
1
10.52
1.60
120.90
131.42
A
A
A
P
O5'
C5'
DA
DA
DA
13
13
13
N
1
-3.10
0.40
104.50
101.40
A
A
A
O4'
C4'
C3'
DA
DA
DA
13
13
13
N
1
8.28
1.10
109.80
118.08
A
A
A
C5'
C4'
O4'
DA
DA
DA
13
13
13
N
1
-4.75
0.70
102.20
97.45
A
A
A
C4'
C3'
C2'
DA
DA
DA
13
13
13
N
1
-5.64
0.70
108.00
102.36
A
A
A
O4'
C1'
N9
DA
DA
DA
13
13
13
N
1
3.24
0.40
105.80
109.04
A
A
A
N9
C4
C5
DA
DA
DA
13
13
13
N
1
-4.95
0.80
127.40
122.45
A
A
A
N3
C4
N9
DA
DA
DA
13
13
13
N
1
11.59
1.10
109.80
121.39
A
A
A
C5'
C4'
O4'
DT
DT
DT
14
14
14
N
1
-5.74
0.80
105.90
100.16
A
A
A
O4'
C1'
C2'
DT
DT
DT
14
14
14
N
1
8.14
0.60
119.00
127.14
A
A
A
C4
C5
C7
DT
DT
DT
14
14
14
N
1
-11.51
0.60
122.90
111.39
A
A
A
C6
C5
C7
DT
DT
DT
14
14
14
N
1
2.32
0.30
108.30
110.62
A
A
A
O4'
C1'
N1
DT
DT
DT
15
15
15
N
1
-5.18
0.60
122.90
117.72
A
A
A
C6
C5
C7
DT
DT
DT
15
15
15
N
1
-4.63
0.70
102.20
97.57
A
A
A
C4'
C3'
C2'
DG
DG
DG
16
16
16
N
1
-4.86
0.70
108.00
103.14
A
A
A
O4'
C1'
N9
DG
DG
DG
16
16
16
N
1
-8.83
0.80
105.90
97.07
A
A
A
O4'
C1'
C2'
DG
DG
DG
18
18
18
N
1
5.05
0.30
108.30
113.35
A
A
A
O4'
C1'
N9
DG
DG
DG
18
18
18
N
1
7.52
1.20
119.70
127.22
A
A
A
C3'
O3'
P
DG
DG
DG
18
18
19
Y
1
-9.05
1.00
110.10
101.05
A
A
A
C1'
O4'
C4'
DG
DG
DG
19
19
19
N
1
-6.46
0.80
105.90
99.44
A
A
A
O4'
C1'
C2'
DG
DG
DG
19
19
19
N
1
-5.53
0.70
108.00
102.47
A
A
A
O4'
C1'
N9
DG
DG
DG
19
19
19
N
1
4.37
0.30
108.30
112.67
A
A
A
O4'
C1'
N9
DG
DG
DG
22
22
22
N
1
6.99
0.60
118.60
125.59
A
A
A
N1
C6
N6
DA
DA
DA
23
23
23
N
1
-9.29
0.80
123.70
114.41
A
A
A
C5
C6
N6
DA
DA
DA
23
23
23
N
1
7.33
1.20
119.70
127.03
A
A
A
C3'
O3'
P
DA
DA
DG
24
24
25
Y
1
1.84
0.30
108.30
110.14
A
A
A
O4'
C1'
N9
DG
DG
DG
25
25
25
N
1
4.40
0.60
106.00
110.40
A
A
A
O4'
C4'
C3'
DG
DG
DG
26
26
26
N
1
-4.73
0.70
102.20
97.47
A
A
A
C4'
C3'
C2'
DG
DG
DG
26
26
26
N
1
-4.31
0.70
108.00
103.69
A
A
A
O4'
C1'
N9
DG
DG
DG
26
26
26
N
1
4.12
0.60
119.00
123.12
A
A
A
C4
C5
C7
DT
DT
DT
27
27
27
N
1
-6.64
0.60
122.90
116.26
A
A
A
C6
C5
C7
DT
DT
DT
27
27
27
N
2
-4.59
0.70
102.20
97.61
A
A
A
C4'
C3'
C2'
DA
DA
DA
1
1
1
N
2
-4.24
0.70
102.20
97.96
A
A
A
C4'
C3'
C2'
DC
DC
DC
2
2
2
N
2
3.79
0.30
108.30
112.09
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
2
5.42
0.60
106.00
111.42
A
A
A
O4'
C4'
C3'
DC
DC
DC
3
3
3
N
2
7.25
1.20
102.50
109.75
A
A
A
C3'
C2'
C1'
DC
DC
DC
3
3
3
N
2
2.64
0.30
108.30
110.94
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
2
3.63
0.60
106.00
109.63
A
A
A
O4'
C4'
C3'
DT
DT
DT
4
4
4
N
2
-5.75
0.60
122.90
117.15
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
2
-5.63
0.80
105.90
100.27
A
A
A
O4'
C1'
C2'
DG
DG
DG
5
5
5
N
2
2.53
0.30
108.30
110.83
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
2
-7.02
0.70
108.00
100.98
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
2
-3.01
0.50
104.30
101.29
A
A
A
C5
N7
C8
DG
DG
DG
6
6
6
N
2
7.96
1.20
119.70
127.66
A
A
A
C3'
O3'
P
DG
DG
DG
7
7
8
Y
2
3.09
0.30
108.30
111.39
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
2
6.05
0.30
108.30
114.35
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
2
-6.10
0.80
105.90
99.80
A
A
A
O4'
C1'
C2'
DA
DA
DA
10
10
10
N
2
1.80
0.30
108.30
110.10
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
2
-5.82
0.80
105.90
100.08
A
A
A
O4'
C1'
C2'
DG
DG
DG
11
11
11
N
2
-8.60
0.70
102.20
93.60
A
A
A
C4'
C3'
C2'
DT
DT
DT
12
12
12
N
2
7.33
0.30
108.30
115.63
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
2
-4.68
0.60
122.90
118.22
A
A
A
C6
C5
C7
DT
DT
DT
12
12
12
N
2
9.75
1.60
120.90
130.65
A
A
A
P
O5'
C5'
DA
DA
DA
13
13
13
N
2
-2.60
0.40
104.50
101.90
A
A
A
O4'
C4'
C3'
DA
DA
DA
13
13
13
N
2
8.05
1.10
109.80
117.85
A
A
A
C5'
C4'
O4'
DA
DA
DA
13
13
13
N
2
-4.78
0.70
102.20
97.42
A
A
A
C4'
C3'
C2'
DA
DA
DA
13
13
13
N
2
-4.66
0.70
108.00
103.34
A
A
A
O4'
C1'
N9
DA
DA
DA
13
13
13
N
2
3.29
0.40
105.80
109.09
A
A
A
N9
C4
C5
DA
DA
DA
13
13
13
N
2
-5.16
0.80
127.40
122.24
A
A
A
N3
C4
N9
DA
DA
DA
13
13
13
N
2
8.27
1.10
109.80
118.07
A
A
A
C5'
C4'
O4'
DT
DT
DT
14
14
14
N
2
8.09
0.60
119.00
127.09
A
A
A
C4
C5
C7
DT
DT
DT
14
14
14
N
2
-11.16
0.60
122.90
111.74
A
A
A
C6
C5
C7
DT
DT
DT
14
14
14
N
2
-4.37
0.70
102.20
97.83
A
A
A
C4'
C3'
C2'
DT
DT
DT
15
15
15
N
2
-6.48
0.60
122.90
116.42
A
A
A
C6
C5
C7
DT
DT
DT
15
15
15
N
2
-7.00
0.80
105.90
98.90
A
A
A
O4'
C1'
C2'
DG
DG
DG
16
16
16
N
2
-4.84
0.70
108.00
103.16
A
A
A
O4'
C1'
N9
DG
DG
DG
16
16
16
N
2
-8.29
0.80
105.90
97.61
A
A
A
O4'
C1'
C2'
DG
DG
DG
18
18
18
N
2
2.51
0.30
108.30
110.81
A
A
A
O4'
C1'
N9
DG
DG
DG
18
18
18
N
2
14.14
1.60
120.90
135.04
A
A
A
P
O5'
C5'
DG
DG
DG
19
19
19
N
2
-9.48
1.00
110.10
100.62
A
A
A
C1'
O4'
C4'
DG
DG
DG
19
19
19
N
2
-6.67
0.80
105.90
99.23
A
A
A
O4'
C1'
C2'
DG
DG
DG
19
19
19
N
2
9.13
1.40
114.30
123.43
A
A
A
N9
C1'
C2'
DG
DG
DG
19
19
19
N
2
-7.68
0.70
108.00
100.32
A
A
A
O4'
C1'
N9
DG
DG
DG
19
19
19
N
2
8.08
1.20
119.70
127.78
A
A
A
C3'
O3'
P
DA
DA
DG
20
20
21
Y
2
3.93
0.30
108.30
112.23
A
A
A
O4'
C1'
N9
DG
DG
DG
22
22
22
N
2
7.64
0.60
118.60
126.24
A
A
A
N1
C6
N6
DA
DA
DA
23
23
23
N
2
-9.66
0.80
123.70
114.04
A
A
A
C5
C6
N6
DA
DA
DA
23
23
23
N
2
-4.95
0.80
105.90
100.95
A
A
A
O4'
C1'
C2'
DA
DA
DA
24
24
24
N
2
4.22
0.60
106.00
110.22
A
A
A
O4'
C4'
C3'
DG
DG
DG
26
26
26
N
2
-4.67
0.70
102.20
97.53
A
A
A
C4'
C3'
C2'
DG
DG
DG
26
26
26
N
2
-4.63
0.70
108.00
103.37
A
A
A
O4'
C1'
N9
DG
DG
DG
26
26
26
N
2
4.15
0.60
119.00
123.15
A
A
A
C4
C5
C7
DT
DT
DT
27
27
27
N
2
-6.61
0.60
122.90
116.29
A
A
A
C6
C5
C7
DT
DT
DT
27
27
27
N
3
-4.63
0.70
102.20
97.57
A
A
A
C4'
C3'
C2'
DA
DA
DA
1
1
1
N
3
-4.39
0.70
102.20
97.81
A
A
A
C4'
C3'
C2'
DC
DC
DC
2
2
2
N
3
4.08
0.30
108.30
112.38
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
3
5.44
0.60
106.00
111.44
A
A
A
O4'
C4'
C3'
DC
DC
DC
3
3
3
N
3
7.37
1.20
102.50
109.87
A
A
A
C3'
C2'
C1'
DC
DC
DC
3
3
3
N
3
2.69
0.30
108.30
110.99
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
3
-5.71
0.60
122.90
117.19
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
3
-5.76
0.80
105.90
100.14
A
A
A
O4'
C1'
C2'
DG
DG
DG
5
5
5
N
3
3.20
0.30
108.30
111.50
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
3
-5.16
0.70
108.00
102.84
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
3
2.99
0.30
108.30
111.29
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
3
8.30
1.20
119.70
128.00
A
A
A
C3'
O3'
P
DG
DG
DG
8
8
9
Y
3
5.79
0.30
108.30
114.09
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
3
2.93
0.40
105.40
108.33
A
A
A
N9
C4
C5
DG
DG
DG
9
9
9
N
3
-7.25
0.80
105.90
98.65
A
A
A
O4'
C1'
C2'
DA
DA
DA
10
10
10
N
3
8.25
1.20
119.70
127.95
A
A
A
C3'
O3'
P
DA
DA
DG
10
10
11
Y
3
-6.42
1.00
110.10
103.68
A
A
A
C1'
O4'
C4'
DG
DG
DG
11
11
11
N
3
2.42
0.30
108.30
110.72
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
3
-8.09
0.70
102.20
94.11
A
A
A
C4'
C3'
C2'
DT
DT
DT
12
12
12
N
3
7.08
0.30
108.30
115.38
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
3
-4.87
0.60
122.90
118.03
A
A
A
C6
C5
C7
DT
DT
DT
12
12
12
N
3
10.52
1.60
120.90
131.42
A
A
A
P
O5'
C5'
DA
DA
DA
13
13
13
N
3
-3.10
0.40
104.50
101.40
A
A
A
O4'
C4'
C3'
DA
DA
DA
13
13
13
N
3
8.28
1.10
109.80
118.08
A
A
A
C5'
C4'
O4'
DA
DA
DA
13
13
13
N
3
-4.75
0.70
102.20
97.45
A
A
A
C4'
C3'
C2'
DA
DA
DA
13
13
13
N
3
-5.64
0.70
108.00
102.36
A
A
A
O4'
C1'
N9
DA
DA
DA
13
13
13
N
3
3.24
0.40
105.80
109.04
A
A
A
N9
C4
C5
DA
DA
DA
13
13
13
N
3
-4.95
0.80
127.40
122.45
A
A
A
N3
C4
N9
DA
DA
DA
13
13
13
N
3
11.59
1.10
109.80
121.39
A
A
A
C5'
C4'
O4'
DT
DT
DT
14
14
14
N
3
-5.74
0.80
105.90
100.16
A
A
A
O4'
C1'
C2'
DT
DT
DT
14
14
14
N
3
8.14
0.60
119.00
127.14
A
A
A
C4
C5
C7
DT
DT
DT
14
14
14
N
3
-11.51
0.60
122.90
111.39
A
A
A
C6
C5
C7
DT
DT
DT
14
14
14
N
3
2.32
0.30
108.30
110.62
A
A
A
O4'
C1'
N1
DT
DT
DT
15
15
15
N
3
-5.18
0.60
122.90
117.72
A
A
A
C6
C5
C7
DT
DT
DT
15
15
15
N
3
-4.63
0.70
102.20
97.57
A
A
A
C4'
C3'
C2'
DG
DG
DG
16
16
16
N
3
-4.86
0.70
108.00
103.14
A
A
A
O4'
C1'
N9
DG
DG
DG
16
16
16
N
3
-8.83
0.80
105.90
97.07
A
A
A
O4'
C1'
C2'
DG
DG
DG
18
18
18
N
3
5.05
0.30
108.30
113.35
A
A
A
O4'
C1'
N9
DG
DG
DG
18
18
18
N
3
7.52
1.20
119.70
127.22
A
A
A
C3'
O3'
P
DG
DG
DG
18
18
19
Y
3
-9.05
1.00
110.10
101.05
A
A
A
C1'
O4'
C4'
DG
DG
DG
19
19
19
N
3
-6.46
0.80
105.90
99.44
A
A
A
O4'
C1'
C2'
DG
DG
DG
19
19
19
N
3
-5.53
0.70
108.00
102.47
A
A
A
O4'
C1'
N9
DG
DG
DG
19
19
19
N
3
4.37
0.30
108.30
112.67
A
A
A
O4'
C1'
N9
DG
DG
DG
22
22
22
N
3
6.99
0.60
118.60
125.59
A
A
A
N1
C6
N6
DA
DA
DA
23
23
23
N
3
-9.29
0.80
123.70
114.41
A
A
A
C5
C6
N6
DA
DA
DA
23
23
23
N
3
7.33
1.20
119.70
127.03
A
A
A
C3'
O3'
P
DA
DA
DG
24
24
25
Y
3
1.84
0.30
108.30
110.14
A
A
A
O4'
C1'
N9
DG
DG
DG
25
25
25
N
3
4.40
0.60
106.00
110.40
A
A
A
O4'
C4'
C3'
DG
DG
DG
26
26
26
N
3
-4.73
0.70
102.20
97.47
A
A
A
C4'
C3'
C2'
DG
DG
DG
26
26
26
N
3
-4.31
0.70
108.00
103.69
A
A
A
O4'
C1'
N9
DG
DG
DG
26
26
26
N
3
4.12
0.60
119.00
123.12
A
A
A
C4
C5
C7
DT
DT
DT
27
27
27
N
3
-6.64
0.60
122.90
116.26
A
A
A
C6
C5
C7
DT
DT
DT
27
27
27
N
4
-4.51
0.70
102.20
97.69
A
A
A
C4'
C3'
C2'
DA
DA
DA
1
1
1
N
4
-4.42
0.70
102.20
97.78
A
A
A
C4'
C3'
C2'
DC
DC
DC
2
2
2
N
4
4.58
0.30
108.30
112.88
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
4
5.37
0.60
106.00
111.37
A
A
A
O4'
C4'
C3'
DC
DC
DC
3
3
3
N
4
7.63
1.20
102.50
110.13
A
A
A
C3'
C2'
C1'
DC
DC
DC
3
3
3
N
4
2.61
0.30
108.30
110.91
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
4
4.23
0.60
106.00
110.23
A
A
A
O4'
C4'
C3'
DT
DT
DT
4
4
4
N
4
-5.41
0.60
122.90
117.49
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
4
-7.79
0.80
105.90
98.11
A
A
A
O4'
C1'
C2'
DG
DG
DG
5
5
5
N
4
7.57
0.30
108.30
115.87
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
4
-5.16
0.80
105.90
100.74
A
A
A
O4'
C1'
C2'
DG
DG
DG
6
6
6
N
4
-9.10
0.70
108.00
98.90
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
4
2.35
0.30
108.30
110.65
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
4
4.96
0.30
108.30
113.26
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
4
-7.58
0.80
105.90
98.32
A
A
A
O4'
C1'
C2'
DA
DA
DA
10
10
10
N
4
-5.21
0.80
105.90
100.69
A
A
A
O4'
C1'
C2'
DG
DG
DG
11
11
11
N
4
-4.36
0.70
119.90
115.54
A
A
A
N3
C2
N2
DG
DG
DG
11
11
11
N
4
-8.23
0.70
102.20
93.97
A
A
A
C4'
C3'
C2'
DT
DT
DT
12
12
12
N
4
7.79
0.30
108.30
116.09
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
4
-4.08
0.60
122.90
118.82
A
A
A
C6
C5
C7
DT
DT
DT
12
12
12
N
4
10.36
1.60
120.90
131.26
A
A
A
P
O5'
C5'
DA
DA
DA
13
13
13
N
4
7.98
1.10
109.80
117.78
A
A
A
C5'
C4'
O4'
DA
DA
DA
13
13
13
N
4
-4.48
0.70
102.20
97.72
A
A
A
C4'
C3'
C2'
DA
DA
DA
13
13
13
N
4
2.99
0.40
105.80
108.79
A
A
A
N9
C4
C5
DA
DA
DA
13
13
13
N
4
8.43
1.10
109.80
118.23
A
A
A
C5'
C4'
O4'
DT
DT
DT
14
14
14
N
4
8.19
0.60
119.00
127.19
A
A
A
C4
C5
C7
DT
DT
DT
14
14
14
N
4
-11.27
0.60
122.90
111.63
A
A
A
C6
C5
C7
DT
DT
DT
14
14
14
N
4
-5.61
0.60
122.90
117.29
A
A
A
C6
C5
C7
DT
DT
DT
15
15
15
N
4
-6.77
0.80
105.90
99.13
A
A
A
O4'
C1'
C2'
DG
DG
DG
16
16
16
N
4
7.51
1.20
119.70
127.21
A
A
A
C3'
O3'
P
DG
DG
DC
16
16
17
Y
4
-6.96
0.80
105.90
98.94
A
A
A
O4'
C1'
C2'
DG
DG
DG
18
18
18
N
4
3.18
0.30
108.30
111.48
A
A
A
O4'
C1'
N9
DG
DG
DG
18
18
18
N
4
-9.12
1.00
110.10
100.98
A
A
A
C1'
O4'
C4'
DG
DG
DG
19
19
19
N
4
-6.82
0.80
105.90
99.08
A
A
A
O4'
C1'
C2'
DG
DG
DG
19
19
19
N
4
-5.95
0.70
108.00
102.05
A
A
A
O4'
C1'
N9
DG
DG
DG
19
19
19
N
4
11.96
1.60
120.90
132.86
A
A
A
P
O5'
C5'
DA
DA
DA
20
20
20
N
4
2.03
0.30
108.30
110.33
A
A
A
O4'
C1'
N9
DA
DA
DA
20
20
20
N
4
10.29
1.20
119.70
129.99
A
A
A
C3'
O3'
P
DG
DG
DG
21
21
22
Y
4
3.78
0.30
108.30
112.08
A
A
A
O4'
C1'
N9
DG
DG
DG
22
22
22
N
4
3.91
0.60
106.00
109.91
A
A
A
O4'
C4'
C3'
DA
DA
DA
24
24
24
N
4
7.20
1.20
119.70
126.90
A
A
A
C3'
O3'
P
DA
DA
DG
24
24
25
Y
4
2.20
0.30
108.30
110.50
A
A
A
O4'
C1'
N9
DG
DG
DG
25
25
25
N
4
4.16
0.60
106.00
110.16
A
A
A
O4'
C4'
C3'
DG
DG
DG
26
26
26
N
4
-4.43
0.70
102.20
97.77
A
A
A
C4'
C3'
C2'
DG
DG
DG
26
26
26
N
4
-4.39
0.70
108.00
103.61
A
A
A
O4'
C1'
N9
DG
DG
DG
26
26
26
N
4
4.41
0.60
119.00
123.41
A
A
A
C4
C5
C7
DT
DT
DT
27
27
27
N
4
-6.80
0.60
122.90
116.10
A
A
A
C6
C5
C7
DT
DT
DT
27
27
27
N
5
-4.79
0.70
102.20
97.41
A
A
A
C4'
C3'
C2'
DA
DA
DA
1
1
1
N
5
-4.34
0.70
102.20
97.86
A
A
A
C4'
C3'
C2'
DC
DC
DC
2
2
2
N
5
3.92
0.30
108.30
112.22
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
5
5.31
0.60
106.00
111.31
A
A
A
O4'
C4'
C3'
DC
DC
DC
3
3
3
N
5
7.37
1.20
102.50
109.87
A
A
A
C3'
C2'
C1'
DC
DC
DC
3
3
3
N
5
2.78
0.30
108.30
111.08
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
5
3.63
0.60
106.00
109.63
A
A
A
O4'
C4'
C3'
DT
DT
DT
4
4
4
N
5
-5.47
0.60
122.90
117.43
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
5
-5.92
0.80
105.90
99.98
A
A
A
O4'
C1'
C2'
DG
DG
DG
5
5
5
N
5
3.23
0.30
108.30
111.53
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
5
3.71
0.60
106.00
109.71
A
A
A
O4'
C4'
C3'
DG
DG
DG
6
6
6
N
5
-6.09
0.70
108.00
101.91
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
5
9.87
1.20
119.70
129.57
A
A
A
C3'
O3'
P
DG
DG
DG
7
7
8
Y
5
1.95
0.30
108.30
110.25
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
5
5.04
0.30
108.30
113.34
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
5
-6.47
0.80
105.90
99.43
A
A
A
O4'
C1'
C2'
DA
DA
DA
10
10
10
N
5
-7.28
1.00
110.10
102.82
A
A
A
C1'
O4'
C4'
DG
DG
DG
11
11
11
N
5
4.10
0.30
108.30
112.40
A
A
A
O4'
C1'
N9
DG
DG
DG
11
11
11
N
5
-6.22
0.70
102.20
95.98
A
A
A
C4'
C3'
C2'
DT
DT
DT
12
12
12
N
5
10.09
0.30
108.30
118.39
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
5
-5.30
0.60
122.90
117.60
A
A
A
C6
C5
C7
DT
DT
DT
12
12
12
N
5
8.31
1.20
102.50
110.81
A
A
A
C3'
C2'
C1'
DA
DA
DA
13
13
13
N
5
11.88
0.30
108.30
120.18
A
A
A
O4'
C1'
N9
DA
DA
DA
13
13
13
N
5
-3.14
0.50
129.30
126.16
A
A
A
N1
C2
N3
DA
DA
DA
13
13
13
N
5
-3.04
0.50
103.90
100.86
A
A
A
C5
N7
C8
DA
DA
DA
13
13
13
N
5
9.05
1.20
119.70
128.75
A
A
A
C3'
O3'
P
DA
DA
DT
13
13
14
Y
5
6.72
1.10
109.80
116.52
A
A
A
C5'
C4'
O4'
DT
DT
DT
14
14
14
N
5
4.32
0.60
118.00
122.32
A
A
A
C4
C5
C6
DT
DT
DT
14
14
14
N
5
5.22
0.60
119.00
124.22
A
A
A
C4
C5
C7
DT
DT
DT
14
14
14
N
5
-9.45
0.60
122.90
113.45
A
A
A
C6
C5
C7
DT
DT
DT
14
14
14
N
5
-6.17
1.00
110.10
103.93
A
A
A
C1'
O4'
C4'
DT
DT
DT
15
15
15
N
5
-6.46
0.80
105.90
99.44
A
A
A
O4'
C1'
C2'
DT
DT
DT
15
15
15
N
5
4.09
0.30
108.30
112.39
A
A
A
O4'
C1'
N1
DT
DT
DT
15
15
15
N
5
6.74
0.60
119.00
125.74
A
A
A
C4
C5
C7
DT
DT
DT
15
15
15
N
5
-9.29
0.60
122.90
113.61
A
A
A
C6
C5
C7
DT
DT
DT
15
15
15
N
5
8.99
1.20
119.70
128.69
A
A
A
C3'
O3'
P
DT
DT
DG
15
15
16
Y
5
-5.39
0.70
108.00
102.61
A
A
A
O4'
C1'
N9
DG
DG
DG
16
16
16
N
5
-8.42
0.80
105.90
97.48
A
A
A
O4'
C1'
C2'
DG
DG
DG
18
18
18
N
5
5.03
0.30
108.30
113.33
A
A
A
O4'
C1'
N9
DG
DG
DG
18
18
18
N
5
-9.58
1.00
110.10
100.52
A
A
A
C1'
O4'
C4'
DG
DG
DG
19
19
19
N
5
-5.77
0.80
105.90
100.13
A
A
A
O4'
C1'
C2'
DG
DG
DG
19
19
19
N
5
-7.33
0.70
108.00
100.67
A
A
A
O4'
C1'
N9
DG
DG
DG
19
19
19
N
5
8.23
1.20
119.70
127.93
A
A
A
C3'
O3'
P
DA
DA
DG
20
20
21
Y
5
10.63
1.20
119.70
130.33
A
A
A
C3'
O3'
P
DG
DG
DG
21
21
22
Y
5
3.35
0.30
108.30
111.65
A
A
A
O4'
C1'
N9
DG
DG
DG
22
22
22
N
5
2.09
0.30
108.30
110.39
A
A
A
O4'
C1'
N9
DA
DA
DA
23
23
23
N
5
4.31
0.60
106.00
110.31
A
A
A
O4'
C4'
C3'
DG
DG
DG
26
26
26
N
5
-4.29
0.70
102.20
97.91
A
A
A
C4'
C3'
C2'
DG
DG
DG
26
26
26
N
5
-4.46
0.70
108.00
103.54
A
A
A
O4'
C1'
N9
DG
DG
DG
26
26
26
N
5
4.27
0.60
119.00
123.27
A
A
A
C4
C5
C7
DT
DT
DT
27
27
27
N
5
-6.76
0.60
122.90
116.14
A
A
A
C6
C5
C7
DT
DT
DT
27
27
27
N
6
-4.66
0.70
102.20
97.54
A
A
A
C4'
C3'
C2'
DA
DA
DA
1
1
1
N
6
-4.23
0.70
102.20
97.97
A
A
A
C4'
C3'
C2'
DC
DC
DC
2
2
2
N
6
4.17
0.30
108.30
112.47
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
6
5.29
0.60
106.00
111.29
A
A
A
O4'
C4'
C3'
DC
DC
DC
3
3
3
N
6
7.40
1.20
102.50
109.90
A
A
A
C3'
C2'
C1'
DC
DC
DC
3
3
3
N
6
3.16
0.30
108.30
111.46
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
6
3.90
0.60
106.00
109.90
A
A
A
O4'
C4'
C3'
DT
DT
DT
4
4
4
N
6
-5.09
0.60
122.90
117.81
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
6
-6.34
0.80
105.90
99.56
A
A
A
O4'
C1'
C2'
DG
DG
DG
5
5
5
N
6
3.11
0.30
108.30
111.41
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
6
8.63
1.20
119.70
128.33
A
A
A
C3'
O3'
P
DG
DG
DG
6
6
7
Y
6
-4.79
0.70
108.00
103.21
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
6
8.20
1.20
119.70
127.90
A
A
A
C3'
O3'
P
DG
DG
DG
7
7
8
Y
6
2.06
0.30
108.30
110.36
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
6
4.54
0.30
108.30
112.84
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
6
-7.09
0.80
105.90
98.81
A
A
A
O4'
C1'
C2'
DA
DA
DA
10
10
10
N
6
-6.52
1.00
110.10
103.58
A
A
A
C1'
O4'
C4'
DG
DG
DG
11
11
11
N
6
-7.61
0.70
102.20
94.59
A
A
A
C4'
C3'
C2'
DT
DT
DT
12
12
12
N
6
4.57
0.30
108.30
112.87
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
6
-4.49
0.60
122.90
118.41
A
A
A
C6
C5
C7
DT
DT
DT
12
12
12
N
6
7.54
1.10
109.80
117.34
A
A
A
C5'
C4'
O4'
DA
DA
DA
13
13
13
N
6
2.92
0.40
105.80
108.72
A
A
A
N9
C4
C5
DA
DA
DA
13
13
13
N
6
-4.90
0.80
127.40
122.50
A
A
A
N3
C4
N9
DA
DA
DA
13
13
13
N
6
8.30
0.60
106.00
114.30
A
A
A
O4'
C4'
C3'
DT
DT
DT
14
14
14
N
6
7.98
1.10
109.80
117.78
A
A
A
C5'
C4'
O4'
DT
DT
DT
14
14
14
N
6
-12.25
0.70
108.00
95.75
A
A
A
O4'
C1'
N1
DT
DT
DT
14
14
14
N
6
9.00
0.60
119.00
128.00
A
A
A
C4
C5
C7
DT
DT
DT
14
14
14
N
6
-12.32
0.60
122.90
110.58
A
A
A
C6
C5
C7
DT
DT
DT
14
14
14
N
6
3.80
0.30
108.30
112.10
A
A
A
O4'
C1'
N1
DT
DT
DT
15
15
15
N
6
5.23
0.60
119.00
124.23
A
A
A
C4
C5
C7
DT
DT
DT
15
15
15
N
6
-8.67
0.60
122.90
114.23
A
A
A
C6
C5
C7
DT
DT
DT
15
15
15
N
6
3.90
0.60
128.60
132.50
A
A
A
C5
C6
O6
DG
DG
DG
16
16
16
N
6
4.49
0.70
120.20
124.69
A
A
A
C5
C4
N4
DC
DC
DC
17
17
17
N
6
-8.75
0.80
105.90
97.15
A
A
A
O4'
C1'
C2'
DG
DG
DG
18
18
18
N
6
4.72
0.30
108.30
113.02
A
A
A
O4'
C1'
N9
DG
DG
DG
18
18
18
N
6
-9.25
1.00
110.10
100.85
A
A
A
C1'
O4'
C4'
DG
DG
DG
19
19
19
N
6
-5.67
0.80
105.90
100.23
A
A
A
O4'
C1'
C2'
DG
DG
DG
19
19
19
N
6
8.46
1.40
114.30
122.76
A
A
A
N9
C1'
C2'
DG
DG
DG
19
19
19
N
6
-5.18
0.70
108.00
102.82
A
A
A
O4'
C1'
N9
DG
DG
DG
19
19
19
N
6
11.85
1.20
119.70
131.55
A
A
A
C3'
O3'
P
DG
DG
DG
21
21
22
Y
6
4.36
0.30
108.30
112.66
A
A
A
O4'
C1'
N9
DG
DG
DG
22
22
22
N
6
2.48
0.40
105.40
107.88
A
A
A
N9
C4
C5
DG
DG
DG
25
25
25
N
6
4.41
0.60
106.00
110.41
A
A
A
O4'
C4'
C3'
DG
DG
DG
26
26
26
N
6
-4.52
0.70
102.20
97.68
A
A
A
C4'
C3'
C2'
DG
DG
DG
26
26
26
N
6
-4.74
0.70
108.00
103.26
A
A
A
O4'
C1'
N9
DG
DG
DG
26
26
26
N
6
4.27
0.60
119.00
123.27
A
A
A
C4
C5
C7
DT
DT
DT
27
27
27
N
6
-6.79
0.60
122.90
116.11
A
A
A
C6
C5
C7
DT
DT
DT
27
27
27
N
7
-4.80
0.70
102.20
97.40
A
A
A
C4'
C3'
C2'
DA
DA
DA
1
1
1
N
7
-4.37
0.70
102.20
97.83
A
A
A
C4'
C3'
C2'
DC
DC
DC
2
2
2
N
7
4.07
0.30
108.30
112.37
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
7
5.32
0.60
106.00
111.32
A
A
A
O4'
C4'
C3'
DC
DC
DC
3
3
3
N
7
7.45
1.20
102.50
109.95
A
A
A
C3'
C2'
C1'
DC
DC
DC
3
3
3
N
7
2.78
0.30
108.30
111.08
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
7
-5.51
0.60
122.90
117.39
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
7
-5.77
0.80
105.90
100.13
A
A
A
O4'
C1'
C2'
DG
DG
DG
5
5
5
N
7
3.85
0.30
108.30
112.15
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
7
-6.87
0.70
108.00
101.13
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
7
2.70
0.40
110.80
113.50
A
A
A
C4
C5
N7
DG
DG
DG
6
6
6
N
7
-3.33
0.50
104.30
100.97
A
A
A
C5
N7
C8
DG
DG
DG
6
6
6
N
7
7.94
1.20
119.70
127.64
A
A
A
C3'
O3'
P
DG
DG
DG
7
7
8
Y
7
6.22
0.30
108.30
114.52
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
7
-7.49
0.80
105.90
98.41
A
A
A
O4'
C1'
C2'
DA
DA
DA
10
10
10
N
7
-5.45
0.80
105.90
100.45
A
A
A
O4'
C1'
C2'
DG
DG
DG
11
11
11
N
7
-8.47
0.70
102.20
93.73
A
A
A
C4'
C3'
C2'
DT
DT
DT
12
12
12
N
7
8.95
0.30
108.30
117.25
A
A
A
O4'
C1'
N1
DT
DT
DT
12
12
12
N
7
-3.68
0.60
122.90
119.22
A
A
A
C6
C5
C7
DT
DT
DT
12
12
12
N
7
10.34
1.60
120.90
131.24
A
A
A
P
O5'
C5'
DA
DA
DA
13
13
13
N
7
-3.12
0.40
104.50
101.38
A
A
A
O4'
C4'
C3'
DA
DA
DA
13
13
13
N
7
8.13
1.10
109.80
117.93
A
A
A
C5'
C4'
O4'
DA
DA
DA
13
13
13
N
7
-4.61
0.70
102.20
97.59
A
A
A
C4'
C3'
C2'
DA
DA
DA
13
13
13
N
7
-4.97
0.70
108.00
103.03
A
A
A
O4'
C1'
N9
DA
DA
DA
13
13
13
N
7
3.23
0.40
105.80
109.03
A
A
A
N9
C4
C5
DA
DA
DA
13
13
13
N
7
-4.94
0.80
127.40
122.46
A
A
A
N3
C4
N9
DA
DA
DA
13
13
13
N
7
10.79
1.10
109.80
120.59
A
A
A
C5'
C4'
O4'
DT
DT
DT
14
14
14
N
7
-5.96
0.80
105.90
99.94
A
A
A
O4'
C1'
C2'
DT
DT
DT
14
14
14
N
7
8.74
0.60
119.00
127.74
A
A
A
C4
C5
C7
DT
DT
DT
14
14
14
N
7
-11.82
0.60
122.90
111.08
A
A
A
C6
C5
C7
DT
DT
DT
14
14
14
N
7
3.07
0.30
108.30
111.37
A
A
A
O4'
C1'
N1
DT
DT
DT
15
15
15
N
7
-5.79
0.60
122.90
117.11
A
A
A
C6
C5
C7
DT
DT
DT
15
15
15
N
7
-8.48
0.70
108.00
99.52
A
A
A
O4'
C1'
N9
DG
DG
DG
16
16
16
N
7
7.84
1.20
119.70
127.54
A
A
A
C3'
O3'
P
DG
DG
DC
16
16
17
Y
7
-7.40
0.80
105.90
98.50
A
A
A
O4'
C1'
C2'
DG
DG
DG
18
18
18
N
7
3.33
0.30
108.30
111.63
A
A
A
O4'
C1'
N9
DG
DG
DG
18
18
18
N
7
-8.82
1.00
110.10
101.28
A
A
A
C1'
O4'
C4'
DG
DG
DG
19
19
19
N
7
-7.37
0.80
105.90
98.53
A
A
A
O4'
C1'
C2'
DG
DG
DG
19
19
19
N
7
-4.92
0.70
108.00
103.08
A
A
A
O4'
C1'
N9
DG
DG
DG
19
19
19
N
7
10.84
1.60
120.90
131.74
A
A
A
P
O5'
C5'
DA
DA
DA
20
20
20
N
7
10.64
1.20
119.70
130.34
A
A
A
C3'
O3'
P
DG
DG
DG
21
21
22
Y
7
3.20
0.30
108.30
111.50
A
A
A
O4'
C1'
N9
DG
DG
DG
22
22
22
N
7
-4.86
0.80
105.90
101.04
A
A
A
O4'
C1'
C2'
DA
DA
DA
24
24
24
N
7
8.27
1.20
119.70
127.97
A
A
A
C3'
O3'
P
DA
DA
DG
24
24
25
Y
7
4.41
0.60
106.00
110.41
A
A
A
O4'
C4'
C3'
DG
DG
DG
26
26
26
N
7
-4.31
0.70
102.20
97.89
A
A
A
C4'
C3'
C2'
DG
DG
DG
26
26
26
N
7
-4.35
0.70
108.00
103.65
A
A
A
O4'
C1'
N9
DG
DG
DG
26
26
26
N
7
4.30
0.60
119.00
123.30
A
A
A
C4
C5
C7
DT
DT
DT
27
27
27
N
7
-6.71
0.60
122.90
116.19
A
A
A
C6
C5
C7
DT
DT
DT
27
27
27
N
1
A
A
N7
C8
DG
DG
5
5
0.043
0.006
1.305
1.348
N
1
A
A
C5
N7
DG
DG
6
6
-0.040
0.006
1.388
1.348
N
1
A
A
N7
C8
DG
DG
6
6
0.044
0.006
1.305
1.349
N
1
A
A
N7
C8
DG
DG
7
7
0.043
0.006
1.305
1.348
N
1
A
A
C5
N7
DG
DG
8
8
-0.038
0.006
1.388
1.350
N
1
A
A
N7
C8
DG
DG
9
9
0.051
0.006
1.305
1.356
N
1
A
A
N7
C8
DG
DG
11
11
0.044
0.006
1.305
1.349
N
1
A
A
C5'
C4'
DA
DA
13
13
0.056
0.007
1.512
1.568
N
1
A
A
N7
C8
DA
DA
13
13
0.044
0.007
1.311
1.355
N
1
A
A
N9
C4
DA
DA
13
13
-0.048
0.006
1.374
1.326
N
1
A
A
C5
C6
DT
DT
14
14
-0.043
0.007
1.339
1.296
N
1
A
A
C6
N1
DT
DT
14
14
-0.048
0.007
1.378
1.330
N
1
A
A
C6
N1
DT
DT
15
15
-0.053
0.007
1.378
1.325
N
1
A
A
N7
C8
DG
DG
16
16
0.045
0.006
1.305
1.350
N
1
A
A
N7
C8
DG
DG
18
18
0.041
0.006
1.305
1.346
N
1
A
A
C5
N7
DG
DG
19
19
-0.044
0.006
1.388
1.344
N
1
A
A
C8
N9
DG
DG
19
19
-0.058
0.007
1.374
1.316
N
1
A
A
C5
N7
DG
DG
21
21
-0.038
0.006
1.388
1.350
N
1
A
A
N7
C8
DG
DG
22
22
0.039
0.006
1.305
1.344
N
1
A
A
C5
N7
DA
DA
23
23
-0.036
0.006
1.388
1.352
N
1
A
A
N7
C8
DG
DG
25
25
0.051
0.006
1.305
1.356
N
1
A
A
N7
C8
DG
DG
26
26
0.038
0.006
1.305
1.343
N
2
A
A
N7
C8
DG
DG
5
5
0.043
0.006
1.305
1.348
N
2
A
A
C5
N7
DG
DG
6
6
-0.037
0.006
1.388
1.351
N
2
A
A
N7
C8
DG
DG
6
6
0.044
0.006
1.305
1.349
N
2
A
A
N7
C8
DG
DG
7
7
0.047
0.006
1.305
1.352
N
2
A
A
C5
N7
DG
DG
8
8
-0.043
0.006
1.388
1.345
N
2
A
A
N7
C8
DG
DG
9
9
0.045
0.006
1.305
1.350
N
2
A
A
C5
N7
DA
DA
10
10
-0.040
0.006
1.388
1.348
N
2
A
A
N7
C8
DG
DG
11
11
0.044
0.006
1.305
1.349
N
2
A
A
C5'
C4'
DA
DA
13
13
0.058
0.007
1.512
1.570
N
2
A
A
N7
C8
DA
DA
13
13
0.045
0.007
1.311
1.356
N
2
A
A
N9
C4
DA
DA
13
13
-0.046
0.006
1.374
1.328
N
2
A
A
C3'
C2'
DT
DT
14
14
-0.059
0.008
1.516
1.457
N
2
A
A
C6
N1
DT
DT
14
14
-0.045
0.007
1.378
1.333
N
2
A
A
C6
N1
DT
DT
15
15
-0.055
0.007
1.378
1.323
N
2
A
A
N7
C8
DG
DG
16
16
0.044
0.006
1.305
1.349
N
2
A
A
N7
C8
DG
DG
18
18
0.039
0.006
1.305
1.344
N
2
A
A
C5
N7
DG
DG
19
19
-0.042
0.006
1.388
1.346
N
2
A
A
C8
N9
DG
DG
19
19
-0.065
0.007
1.374
1.309
N
2
A
A
C5
N7
DG
DG
21
21
-0.037
0.006
1.388
1.351
N
2
A
A
N7
C8
DG
DG
22
22
0.041
0.006
1.305
1.346
N
2
A
A
C5
N7
DA
DA
23
23
-0.037
0.006
1.388
1.351
N
2
A
A
N7
C8
DG
DG
25
25
0.051
0.006
1.305
1.356
N
2
A
A
N7
C8
DG
DG
26
26
0.039
0.006
1.305
1.344
N
3
A
A
N7
C8
DG
DG
5
5
0.043
0.006
1.305
1.348
N
3
A
A
C5
N7
DG
DG
6
6
-0.040
0.006
1.388
1.348
N
3
A
A
N7
C8
DG
DG
6
6
0.044
0.006
1.305
1.349
N
3
A
A
N7
C8
DG
DG
7
7
0.043
0.006
1.305
1.348
N
3
A
A
C5
N7
DG
DG
8
8
-0.038
0.006
1.388
1.350
N
3
A
A
N7
C8
DG
DG
9
9
0.051
0.006
1.305
1.356
N
3
A
A
N7
C8
DG
DG
11
11
0.044
0.006
1.305
1.349
N
3
A
A
C5'
C4'
DA
DA
13
13
0.056
0.007
1.512
1.568
N
3
A
A
N7
C8
DA
DA
13
13
0.044
0.007
1.311
1.355
N
3
A
A
N9
C4
DA
DA
13
13
-0.048
0.006
1.374
1.326
N
3
A
A
C5
C6
DT
DT
14
14
-0.043
0.007
1.339
1.296
N
3
A
A
C6
N1
DT
DT
14
14
-0.048
0.007
1.378
1.330
N
3
A
A
C6
N1
DT
DT
15
15
-0.053
0.007
1.378
1.325
N
3
A
A
N7
C8
DG
DG
16
16
0.045
0.006
1.305
1.350
N
3
A
A
N7
C8
DG
DG
18
18
0.041
0.006
1.305
1.346
N
3
A
A
C5
N7
DG
DG
19
19
-0.044
0.006
1.388
1.344
N
3
A
A
C8
N9
DG
DG
19
19
-0.058
0.007
1.374
1.316
N
3
A
A
C5
N7
DG
DG
21
21
-0.038
0.006
1.388
1.350
N
3
A
A
N7
C8
DG
DG
22
22
0.039
0.006
1.305
1.344
N
3
A
A
C5
N7
DA
DA
23
23
-0.036
0.006
1.388
1.352
N
3
A
A
N7
C8
DG
DG
25
25
0.051
0.006
1.305
1.356
N
3
A
A
N7
C8
DG
DG
26
26
0.038
0.006
1.305
1.343
N
4
A
A
N7
C8
DG
DG
5
5
0.039
0.006
1.305
1.344
N
4
A
A
C5
N7
DG
DG
6
6
-0.041
0.006
1.388
1.347
N
4
A
A
N7
C8
DG
DG
6
6
0.045
0.006
1.305
1.350
N
4
A
A
N7
C8
DG
DG
7
7
0.049
0.006
1.305
1.354
N
4
A
A
C5
N7
DG
DG
8
8
-0.042
0.006
1.388
1.346
N
4
A
A
N7
C8
DG
DG
9
9
0.045
0.006
1.305
1.350
N
4
A
A
N7
C8
DG
DG
11
11
0.051
0.006
1.305
1.356
N
4
A
A
C5'
C4'
DA
DA
13
13
0.051
0.007
1.512
1.563
N
4
A
A
N9
C4
DA
DA
13
13
-0.043
0.006
1.374
1.331
N
4
A
A
C3'
C2'
DT
DT
14
14
-0.062
0.008
1.516
1.454
N
4
A
A
C6
N1
DT
DT
14
14
-0.045
0.007
1.378
1.333
N
4
A
A
C6
N1
DT
DT
15
15
-0.052
0.007
1.378
1.326
N
4
A
A
N7
C8
DG
DG
16
16
0.046
0.006
1.305
1.351
N
4
A
A
N7
C8
DG
DG
18
18
0.041
0.006
1.305
1.346
N
4
A
A
C5
N7
DG
DG
19
19
-0.042
0.006
1.388
1.346
N
4
A
A
C8
N9
DG
DG
19
19
-0.058
0.007
1.374
1.316
N
4
A
A
C5
N7
DG
DG
21
21
-0.039
0.006
1.388
1.349
N
4
A
A
N7
C8
DG
DG
22
22
0.040
0.006
1.305
1.345
N
4
A
A
N7
C8
DG
DG
25
25
0.052
0.006
1.305
1.357
N
4
A
A
N7
C8
DG
DG
26
26
0.038
0.006
1.305
1.343
N
5
A
A
N7
C8
DG
DG
5
5
0.038
0.006
1.305
1.343
N
5
A
A
C5
N7
DG
DG
6
6
-0.040
0.006
1.388
1.348
N
5
A
A
N7
C8
DG
DG
6
6
0.042
0.006
1.305
1.347
N
5
A
A
N7
C8
DG
DG
7
7
0.046
0.006
1.305
1.351
N
5
A
A
C5
N7
DG
DG
8
8
-0.043
0.006
1.388
1.345
N
5
A
A
N7
C8
DG
DG
9
9
0.044
0.006
1.305
1.349
N
5
A
A
N7
C8
DG
DG
11
11
0.045
0.006
1.305
1.350
N
5
A
A
C3'
C2'
DA
DA
13
13
-0.049
0.008
1.516
1.467
N
5
A
A
C2'
C1'
DA
DA
13
13
-0.064
0.010
1.518
1.454
N
5
A
A
N7
C8
DA
DA
13
13
0.059
0.007
1.311
1.370
N
5
A
A
C8
N9
DA
DA
13
13
-0.106
0.008
1.373
1.267
N
5
A
A
N9
C4
DA
DA
13
13
-0.040
0.006
1.374
1.334
N
5
A
A
C5'
C4'
DT
DT
14
14
0.055
0.007
1.512
1.567
N
5
A
A
C3'
C2'
DT
DT
14
14
-0.052
0.008
1.516
1.464
N
5
A
A
C2'
C1'
DT
DT
14
14
-0.060
0.010
1.518
1.458
N
5
A
A
C6
N1
DT
DT
14
14
-0.043
0.007
1.378
1.335
N
5
A
A
C5
C7
DT
DT
14
14
-0.048
0.006
1.496
1.448
N
5
A
A
C6
N1
DT
DT
15
15
-0.063
0.007
1.378
1.315
N
5
A
A
N7
C8
DG
DG
16
16
0.043
0.006
1.305
1.348
N
5
A
A
N7
C8
DG
DG
18
18
0.041
0.006
1.305
1.346
N
5
A
A
C5
N7
DG
DG
19
19
-0.046
0.006
1.388
1.342
N
5
A
A
C8
N9
DG
DG
19
19
-0.057
0.007
1.374
1.317
N
5
A
A
N7
C8
DG
DG
22
22
0.044
0.006
1.305
1.349
N
5
A
A
C5
N7
DA
DA
23
23
-0.038
0.006
1.388
1.350
N
5
A
A
N7
C8
DG
DG
25
25
0.052
0.006
1.305
1.357
N
5
A
A
N7
C8
DG
DG
26
26
0.038
0.006
1.305
1.343
N
6
A
A
N7
C8
DG
DG
5
5
0.039
0.006
1.305
1.344
N
6
A
A
C5
N7
DG
DG
6
6
-0.037
0.006
1.388
1.351
N
6
A
A
N7
C8
DG
DG
6
6
0.042
0.006
1.305
1.347
N
6
A
A
N7
C8
DG
DG
7
7
0.047
0.006
1.305
1.352
N
6
A
A
C5
N7
DG
DG
8
8
-0.043
0.006
1.388
1.345
N
6
A
A
N7
C8
DG
DG
9
9
0.043
0.006
1.305
1.348
N
6
A
A
N7
C8
DG
DG
11
11
0.045
0.006
1.305
1.350
N
6
A
A
C5'
C4'
DA
DA
13
13
0.056
0.007
1.512
1.568
N
6
A
A
N7
C8
DA
DA
13
13
0.052
0.007
1.311
1.363
N
6
A
A
N9
C4
DA
DA
13
13
-0.045
0.006
1.374
1.329
N
6
A
A
C5
C6
DT
DT
14
14
-0.044
0.007
1.339
1.295
N
6
A
A
C6
N1
DT
DT
15
15
-0.058
0.007
1.378
1.320
N
6
A
A
N7
C8
DG
DG
16
16
0.049
0.006
1.305
1.354
N
6
A
A
N7
C8
DG
DG
18
18
0.041
0.006
1.305
1.346
N
6
A
A
C5
N7
DG
DG
19
19
-0.038
0.006
1.388
1.350
N
6
A
A
C8
N9
DG
DG
19
19
-0.057
0.007
1.374
1.317
N
6
A
A
C5
N7
DG
DG
21
21
-0.036
0.006
1.388
1.352
N
6
A
A
N7
C8
DG
DG
21
21
0.038
0.006
1.305
1.343
N
6
A
A
N7
C8
DG
DG
22
22
0.044
0.006
1.305
1.349
N
6
A
A
C8
N9
DG
DG
22
22
-0.045
0.007
1.374
1.329
N
6
A
A
C5
N7
DA
DA
23
23
-0.039
0.006
1.388
1.349
N
6
A
A
N7
C8
DG
DG
25
25
0.053
0.006
1.305
1.358
N
6
A
A
N7
C8
DG
DG
26
26
0.040
0.006
1.305
1.345
N
7
A
A
N7
C8
DG
DG
5
5
0.039
0.006
1.305
1.344
N
7
A
A
C5
N7
DG
DG
6
6
-0.039
0.006
1.388
1.349
N
7
A
A
N7
C8
DG
DG
6
6
0.044
0.006
1.305
1.349
N
7
A
A
N7
C8
DG
DG
7
7
0.047
0.006
1.305
1.352
N
7
A
A
C5
N7
DG
DG
8
8
-0.041
0.006
1.388
1.347
N
7
A
A
N7
C8
DG
DG
9
9
0.047
0.006
1.305
1.352
N
7
A
A
C8
N9
DG
DG
9
9
-0.042
0.007
1.374
1.332
N
7
A
A
N7
C8
DG
DG
11
11
0.045
0.006
1.305
1.350
N
7
A
A
C5'
C4'
DA
DA
13
13
0.057
0.007
1.512
1.569
N
7
A
A
N7
C8
DA
DA
13
13
0.045
0.007
1.311
1.356
N
7
A
A
N9
C4
DA
DA
13
13
-0.047
0.006
1.374
1.327
N
7
A
A
C5
C6
DT
DT
14
14
-0.046
0.007
1.339
1.293
N
7
A
A
C6
N1
DT
DT
14
14
-0.050
0.007
1.378
1.328
N
7
A
A
C6
N1
DT
DT
15
15
-0.050
0.007
1.378
1.328
N
7
A
A
N7
C8
DG
DG
16
16
0.048
0.006
1.305
1.353
N
7
A
A
N7
C8
DG
DG
18
18
0.041
0.006
1.305
1.346
N
7
A
A
C5
N7
DG
DG
19
19
-0.050
0.006
1.388
1.338
N
7
A
A
C8
N9
DG
DG
19
19
-0.061
0.007
1.374
1.313
N
7
A
A
N7
C8
DG
DG
21
21
0.040
0.006
1.305
1.345
N
7
A
A
N7
C8
DG
DG
22
22
0.044
0.006
1.305
1.349
N
7
A
A
N7
C8
DG
DG
25
25
0.051
0.006
1.305
1.356
N
7
A
A
N7
C8
DG
DG
26
26
0.038
0.006
1.305
1.343
N
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
STRUCTURAL BASIS OF DNA FOLDING AND RECOGNITION IN AMP-DNA APTAMER COMPLEX, NMR, 7 STRUCTURES
1
N
N
2
N
N
2
N
N
hydrog
WATSON-CRICK
A
DA
1
A
N1
DA
1
1_555
A
DT
27
A
N3
DT
27
1_555
hydrog
WATSON-CRICK
A
DA
1
A
N6
DA
1
1_555
A
DT
27
A
O4
DT
27
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
A
DG
26
A
N1
DG
26
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
A
DG
26
A
O6
DG
26
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
A
DG
26
A
N2
DG
26
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
A
DG
25
A
N1
DG
25
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
A
DG
25
A
O6
DG
25
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
A
DG
25
A
N2
DG
25
1_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
A
DA
24
A
N1
DA
24
1_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
A
DA
24
A
N6
DA
24
1_555
hydrog
TYPE_11_PAIR
A
DG
5
A
N2
DG
5
1_555
A
DA
23
A
N7
DA
23
1_555
hydrog
TYPE_11_PAIR
A
DG
5
A
N3
DG
5
1_555
A
DA
23
A
N6
DA
23
1_555
hydrog
TYPE_7_PAIR
A
DG
6
A
N7
DG
6
1_555
A
DG
21
A
N1
DG
21
1_555
hydrog
TYPE_7_PAIR
A
DG
6
A
O6
DG
6
1_555
A
DG
21
A
N2
DG
21
1_555
hydrog
TYPE_7_PAIR
A
DG
8
A
N1
DG
8
1_555
A
DG
19
A
N7
DG
19
1_555
hydrog
TYPE_7_PAIR
A
DG
8
A
N2
DG
8
1_555
A
DG
19
A
O6
DG
19
1_555
hydrog
TYPE_11_PAIR
A
DA
10
A
N6
DA
10
1_555
A
DG
18
A
N3
DG
18
1_555
hydrog
TYPE_11_PAIR
A
DA
10
A
N7
DA
10
1_555
A
DG
18
A
N2
DG
18
1_555
hydrog
WATSON-CRICK
A
DG
11
A
N1
DG
11
1_555
A
DC
17
A
N3
DC
17
1_555
hydrog
WATSON-CRICK
A
DG
11
A
N2
DG
11
1_555
A
DC
17
A
O2
DC
17
1_555
hydrog
WATSON-CRICK
A
DG
11
A
O6
DG
11
1_555
A
DC
17
A
N4
DC
17
1_555
hydrog
TYPE_28_PAIR
A
DT
12
A
N3
DT
12
1_555
A
DG
16
A
O6
DG
16
1_555
hydrog
TYPE_28_PAIR
A
DT
12
A
O2
DT
12
1_555
A
DG
16
A
N1
DG
16
1_555
DNA
ADAPTIVE BINDING, AMP BINDING, DNA APTAMER, DNA BINDING, DNA RECOGNITION, AMP-DNA APTAMER COMPLEX, DNA
1AW4
PDB
1
1AW4
1
27
1AW4
1
27
1AW4
A
1
1
27
BINDING SITE FOR RESIDUE AMP A 28
A
AMP
28
Software
5
BINDING SITE FOR RESIDUE AMP A 29
A
AMP
29
Software
6
A
DG
8
A
DG
8
5
1_555
A
DG
9
A
DG
9
5
1_555
A
DA
10
A
DA
10
5
1_555
A
DG
11
A
DG
11
5
1_555
A
DG
19
A
DG
19
5
1_555
A
DG
6
A
DG
6
6
1_555
A
DG
19
A
DG
19
6
1_555
A
DG
21
A
DG
21
6
1_555
A
DG
22
A
DG
22
6
1_555
A
DA
23
A
DA
23
6
1_555
A
DA
24
A
DA
24
6
1_555
1
P 1