1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Mao, B.
Gorin, A.A.
Gu, Z.
Hingerty, B.E.
Broyde, S.
Patel, D.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C13 H11 N
181.233
2-AMINOFLUORENE
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
US
Biochemistry
BICHAW
0033
0006-2960
36
14479
14490
10.1021/bi972205z
9398167
Solution structure of the aminofluorene-intercalated conformer of the syn [AF]-C8-dG adduct opposite a--2 deletion site in the NarI hot spot sequence context.
1997
10.2210/pdb1ax6/pdb
pdb_00001ax6
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
N ATOM OF AF-GROUP LINKED TO C8 ATOM OF DG7
3599.343
DNA DUPLEX D(CTCGGC-[AF]G-CCATC)D(GATGGCCGAG)
1
syn
polymer
N ATOM OF AF-GROUP LINKED TO C8 ATOM OF DG7
3110.041
DNA DUPLEX D(CTCGGC-[AF]G-CCATC)D(GATGGCCGAG)
1
syn
polymer
181.233
2-AMINOFLUORENE
1
syn
non-polymer
no
no
(DC)(DT)(DC)(DG)(DG)(DC)(DG)(DC)(DC)(DA)(DT)(DC)
CTCGGCGCCATC
A
polydeoxyribonucleotide
no
no
(DG)(DA)(DT)(DG)(DG)(DC)(DC)(DG)(DA)(DG)
GATGGCCGAG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
15.556
1
19
A
1
B
22
2.148
A_DC1:DG22_B
1
-9.159
0.440
-0.561
-0.142
-3.511
1
20
A
2
B
21
-2.449
A_DT2:DA21_B
2
-13.715
-0.413
0.075
-0.134
-14.063
1
19
A
3
B
20
0.318
A_DC3:DG20_B
3
-1.414
1.132
0.509
-0.455
12.300
1
19
A
4
B
19
-2.664
A_DG4:DC19_B
4
-26.007
-0.716
0.741
-0.472
-3.738
1
19
A
5
B
18
3.544
A_DG5:DC18_B
5
17.056
-0.306
0.367
-0.238
21.430
1
19
A
8
B
17
3.444
A_DC8:DG17_B
6
-26.958
1.159
-0.501
-0.438
-29.951
1
19
A
9
B
16
2.112
A_DC9:DG16_B
7
0.801
1.059
0.484
-0.211
-14.790
1
20
A
10
B
15
1.060
A_DA10:DT15_B
8
-17.769
-0.028
0.003
-0.141
1.081
1
20
A
11
B
14
6.663
A_DT11:DA14_B
9
-13.360
-0.042
0.278
-0.323
-4.647
1
19
A
12
B
13
1.838
A_DC12:DG13_B
10
-12.529
1.042
0.480
-0.369
3.212
36.027
A
A
1
2
55.648
B
B
22
21
4.134
29.558
-0.152
0.985
AA_DC1DT2:DA21DG22_BB
1
-2.148
4.044
20.719
-4.501
-0.197
4.151
45.761
A
A
2
3
24.007
B
B
21
20
3.754
18.195
-0.038
1.795
AA_DT2DC3:DG20DA21_BB
2
-2.426
3.201
42.100
0.303
-0.218
2.397
21.213
A
A
3
4
10.318
B
B
20
19
2.437
3.758
0.382
-0.173
AA_DC3DG4:DC19DG20_BB
3
3.854
-10.582
20.526
-1.639
0.160
3.612
54.097
A
A
4
5
-35.095
B
B
19
18
4.035
-30.305
1.402
-0.274
AA_DG4DG5:DC18DC19_BB
4
1.985
-2.299
45.309
2.114
-1.384
4.034
53.473
A
A
5
8
43.096
B
B
18
17
5.062
34.166
-0.658
1.773
AA_DG5DC8:DG17DC18_BB
5
25.064
-31.615
33.399
-1.857
3.539
4.517
58.716
A
A
8
9
15.294
B
B
17
16
4.304
14.780
1.017
0.951
AA_DC8DC9:DG16DG17_BB
6
11.284
-11.676
55.944
-0.093
-0.225
2.227
33.186
A
A
9
10
19.751
B
B
16
15
2.586
10.983
0.684
-0.938
AA_DC9DA10:DT15DG16_BB
7
7.408
-13.323
30.495
-3.059
-0.242
2.702
27.280
A
A
10
11
-11.807
B
B
15
14
2.714
-5.527
0.410
-0.388
AA_DA10DT11:DA14DT15_BB
8
-1.906
4.072
26.657
0.333
-1.268
3.131
46.076
A
A
11
12
15.369
B
B
14
13
3.253
11.906
-0.680
-0.033
AA_DT11DC12:DG13DA14_BB
9
1.026
-1.325
44.581
-1.058
0.957
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1998-07-01
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1997-10-30
REL
REL
AF
2-AMINOFLUORENE
ALL CONFORMERS PRESENTED
6
6
NOESY
COSY
TOCSY
7.0
322
K
REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.
RELAXATION MATRIX REFINEMENT
BRUNGER
refinement
X-PLOR
3.1
structure solution
VNMR
structure solution
DUPLEX
structure solution
X-PLOR
500
Varian
VARIAN UNITY PLUS
600
Varian
VARIAN UNITY PLUS
AF
23
3
AF
AF
23
A
C
1
n
1
DC
1
A
T
2
n
2
DT
2
A
C
3
n
3
DC
3
A
G
4
n
4
DG
4
A
G
5
n
5
DG
5
A
C
6
n
6
DC
6
A
G
7
n
7
DG
7
A
C
8
n
8
DC
8
A
C
9
n
9
DC
9
A
A
10
n
10
DA
10
A
T
11
n
11
DT
11
A
C
12
n
12
DC
12
A
G
13
n
1
DG
13
B
A
14
n
2
DA
14
B
T
15
n
3
DT
15
B
G
16
n
4
DG
16
B
G
17
n
5
DG
17
B
C
18
n
6
DC
18
B
C
19
n
7
DC
19
B
G
20
n
8
DG
20
B
A
21
n
9
DA
21
B
G
22
n
10
DG
22
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
B
H3
N1
DT
DA
11
14
1.59
1
-6.67
0.80
105.90
99.23
A
A
A
O4'
C1'
C2'
DT
DT
DT
2
2
2
N
1
-5.60
0.70
108.00
102.40
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
-6.84
0.70
102.20
95.36
A
A
A
C4'
C3'
C2'
DG
DG
DG
4
4
4
N
1
-5.21
0.80
105.90
100.69
A
A
A
O4'
C1'
C2'
DG
DG
DG
4
4
4
N
1
7.87
0.30
108.30
116.17
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
12.48
1.20
119.70
132.18
A
A
A
C3'
O3'
P
DG
DG
DG
4
4
5
Y
1
-6.67
0.80
105.90
99.23
A
A
A
O4'
C1'
C2'
DG
DG
DG
5
5
5
N
1
2.52
0.30
108.30
110.82
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
1
-5.66
0.70
108.00
102.34
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
1
-3.67
0.60
122.90
119.23
A
A
A
C6
C5
C7
DT
DT
DT
11
11
11
N
1
-6.17
0.70
108.00
101.83
A
A
A
O4'
C1'
N1
DC
DC
DC
12
12
12
N
1
4.07
0.60
118.90
122.97
A
A
A
N1
C2
O2
DC
DC
DC
12
12
12
N
1
-4.36
0.70
102.20
97.84
B
B
B
C4'
C3'
C2'
DT
DT
DT
15
15
15
N
1
-8.62
0.80
105.90
97.28
B
B
B
O4'
C1'
C2'
DT
DT
DT
15
15
15
N
1
14.56
0.30
108.30
122.86
B
B
B
O4'
C1'
N1
DT
DT
DT
15
15
15
N
1
4.13
0.30
108.30
112.43
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
1
-4.52
0.70
102.20
97.68
B
B
B
C4'
C3'
C2'
DG
DG
DG
17
17
17
N
1
10.70
1.40
114.30
125.00
B
B
B
N9
C1'
C2'
DG
DG
DG
17
17
17
N
1
9.78
1.20
119.70
129.48
B
B
B
C3'
O3'
P
DG
DG
DC
17
17
18
Y
1
-5.09
0.80
102.40
97.31
B
B
B
C3'
C2'
C1'
DC
DC
DC
18
18
18
N
1
-4.84
0.70
108.00
103.16
B
B
B
O4'
C1'
N1
DC
DC
DC
19
19
19
N
1
-5.09
0.70
108.00
102.91
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
1
-4.70
0.70
108.00
103.30
B
B
B
O4'
C1'
N9
DA
DA
DA
21
21
21
N
2
-4.55
0.70
102.20
97.65
A
A
A
C4'
C3'
C2'
DC
DC
DC
1
1
1
N
2
2.48
0.30
108.30
110.78
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
2
-6.22
0.80
105.90
99.68
A
A
A
O4'
C1'
C2'
DT
DT
DT
2
2
2
N
2
-7.58
0.70
108.00
100.42
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
2
-5.38
0.70
102.20
96.82
A
A
A
C4'
C3'
C2'
DG
DG
DG
4
4
4
N
2
-5.67
0.80
105.90
100.23
A
A
A
O4'
C1'
C2'
DG
DG
DG
4
4
4
N
2
4.58
0.30
108.30
112.88
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
2
11.53
1.60
120.90
132.43
A
A
A
P
O5'
C5'
DG
DG
DG
5
5
5
N
2
-7.47
1.00
110.10
102.63
A
A
A
C1'
O4'
C4'
DG
DG
DG
5
5
5
N
2
12.49
2.00
112.30
124.79
A
A
A
C4'
C3'
O3'
DG
DG
DG
5
5
5
N
2
8.99
1.40
114.30
123.29
A
A
A
N9
C1'
C2'
DG
DG
DG
7
7
7
N
2
-5.41
0.70
108.00
102.59
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
2
-3.84
0.60
122.90
119.06
A
A
A
C6
C5
C7
DT
DT
DT
11
11
11
N
2
-6.67
0.80
105.90
99.23
B
B
B
O4'
C1'
C2'
DG
DG
DG
13
13
13
N
2
-6.21
0.80
105.90
99.69
B
B
B
O4'
C1'
C2'
DA
DA
DA
14
14
14
N
2
-7.49
0.80
105.90
98.41
B
B
B
O4'
C1'
C2'
DT
DT
DT
15
15
15
N
2
5.34
0.30
108.30
113.64
B
B
B
O4'
C1'
N1
DT
DT
DT
15
15
15
N
2
-5.77
0.70
102.20
96.43
B
B
B
C4'
C3'
C2'
DG
DG
DG
16
16
16
N
2
2.73
0.30
108.30
111.03
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
2
3.11
0.30
108.30
111.41
B
B
B
O4'
C1'
N9
DG
DG
DG
17
17
17
N
2
-6.99
1.00
110.10
103.11
B
B
B
C1'
O4'
C4'
DC
DC
DC
18
18
18
N
2
-4.88
0.80
105.90
101.02
B
B
B
O4'
C1'
C2'
DC
DC
DC
18
18
18
N
2
7.82
1.20
119.70
127.52
B
B
B
C3'
O3'
P
DC
DC
DC
18
18
19
Y
2
-6.89
0.80
105.90
99.01
B
B
B
O4'
C1'
C2'
DG
DG
DG
20
20
20
N
2
-8.40
0.70
108.00
99.60
B
B
B
O4'
C1'
N9
DA
DA
DA
21
21
21
N
2
-5.84
0.80
105.90
100.06
B
B
B
O4'
C1'
C2'
DG
DG
DG
22
22
22
N
2
2.12
0.30
108.30
110.42
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
3
-4.96
0.70
102.20
97.24
A
A
A
C4'
C3'
C2'
DC
DC
DC
1
1
1
N
3
-5.36
0.80
105.90
100.54
A
A
A
O4'
C1'
C2'
DC
DC
DC
1
1
1
N
3
4.80
0.30
108.30
113.10
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
3
2.08
0.30
108.30
110.38
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
3
4.63
0.70
124.90
129.53
A
A
A
C5
C4
O4
DT
DT
DT
2
2
2
N
3
-4.00
0.60
122.90
118.90
A
A
A
C6
C5
C7
DT
DT
DT
2
2
2
N
3
-6.35
0.70
108.00
101.65
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
3
-6.06
0.70
102.20
96.14
A
A
A
C4'
C3'
C2'
DG
DG
DG
4
4
4
N
3
-6.04
0.80
105.90
99.86
A
A
A
O4'
C1'
C2'
DG
DG
DG
4
4
4
N
3
3.93
0.30
108.30
112.23
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
3
-3.69
0.40
104.50
100.81
A
A
A
O4'
C4'
C3'
DG
DG
DG
5
5
5
N
3
-7.09
1.00
110.10
103.01
A
A
A
C1'
O4'
C4'
DG
DG
DG
5
5
5
N
3
-5.88
0.70
108.00
102.12
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
3
3.20
0.30
108.30
111.50
A
A
A
O4'
C1'
N1
DT
DT
DT
11
11
11
N
3
-5.42
0.70
108.00
102.58
A
A
A
O4'
C1'
N1
DC
DC
DC
12
12
12
N
3
1.88
0.30
108.30
110.18
B
B
B
O4'
C1'
N9
DG
DG
DG
13
13
13
N
3
-4.37
0.70
108.00
103.63
B
B
B
O4'
C1'
N9
DA
DA
DA
14
14
14
N
3
-6.93
1.00
110.10
103.17
B
B
B
C1'
O4'
C4'
DT
DT
DT
15
15
15
N
3
5.36
0.30
108.30
113.66
B
B
B
O4'
C1'
N1
DT
DT
DT
15
15
15
N
3
-8.66
0.80
105.90
97.24
B
B
B
O4'
C1'
C2'
DC
DC
DC
19
19
19
N
3
-6.72
0.80
102.40
95.68
B
B
B
C3'
C2'
C1'
DG
DG
DG
20
20
20
N
3
2.12
0.30
108.30
110.42
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
3
7.59
1.20
119.70
127.29
B
B
B
C3'
O3'
P
DG
DG
DA
20
20
21
Y
3
-4.59
0.70
108.00
103.41
B
B
B
O4'
C1'
N9
DA
DA
DA
21
21
21
N
4
-5.04
0.70
102.20
97.16
A
A
A
C4'
C3'
C2'
DC
DC
DC
1
1
1
N
4
3.65
0.30
108.30
111.95
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
4
5.67
0.30
108.30
113.97
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
4
-7.87
0.70
108.00
100.13
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
4
3.73
0.60
118.90
122.63
A
A
A
N1
C2
O2
DC
DC
DC
3
3
3
N
4
-5.71
0.70
102.20
96.49
A
A
A
C4'
C3'
C2'
DG
DG
DG
4
4
4
N
4
6.81
0.30
108.30
115.11
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
4
-3.29
0.40
104.50
101.21
A
A
A
O4'
C4'
C3'
DG
DG
DG
5
5
5
N
4
10.58
1.60
120.90
131.48
A
A
A
P
O5'
C5'
DC
DC
DC
6
6
6
N
4
-3.79
0.40
104.50
100.71
A
A
A
O4'
C4'
C3'
DC
DC
DC
6
6
6
N
4
2.84
0.30
108.30
111.14
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
4
-8.58
0.80
105.90
97.32
A
A
A
O4'
C1'
C2'
DC
DC
DC
9
9
9
N
4
2.58
0.30
108.30
110.88
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
4
-6.09
0.80
105.90
99.81
A
A
A
O4'
C1'
C2'
DA
DA
DA
10
10
10
N
4
-5.68
0.70
108.00
102.32
A
A
A
O4'
C1'
N9
DA
DA
DA
10
10
10
N
4
-5.46
0.60
122.90
117.44
A
A
A
C6
C5
C7
DT
DT
DT
11
11
11
N
4
-4.94
0.80
102.40
97.46
B
B
B
C3'
C2'
C1'
DG
DG
DG
13
13
13
N
4
-5.17
0.70
102.20
97.03
B
B
B
C4'
C3'
C2'
DT
DT
DT
15
15
15
N
4
-8.11
0.80
105.90
97.79
B
B
B
O4'
C1'
C2'
DT
DT
DT
15
15
15
N
4
15.56
0.30
108.30
123.86
B
B
B
O4'
C1'
N1
DT
DT
DT
15
15
15
N
4
-4.82
0.60
122.90
118.08
B
B
B
C6
C5
C7
DT
DT
DT
15
15
15
N
4
3.53
0.30
108.30
111.83
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
4
-3.74
0.40
104.50
100.76
B
B
B
O4'
C4'
C3'
DG
DG
DG
17
17
17
N
4
5.64
0.30
108.30
113.94
B
B
B
O4'
C1'
N9
DG
DG
DG
17
17
17
N
4
-6.94
0.80
105.90
98.96
B
B
B
O4'
C1'
C2'
DC
DC
DC
18
18
18
N
4
-5.65
0.80
102.40
96.75
B
B
B
C3'
C2'
C1'
DG
DG
DG
20
20
20
N
4
7.91
1.20
119.70
127.61
B
B
B
C3'
O3'
P
DG
DG
DA
20
20
21
Y
5
-4.74
0.70
102.20
97.46
A
A
A
C4'
C3'
C2'
DC
DC
DC
1
1
1
N
5
-12.21
0.70
108.00
95.79
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
5
8.76
1.20
119.70
128.46
A
A
A
C3'
O3'
P
DC
DC
DG
3
3
4
Y
5
-5.54
0.70
102.20
96.66
A
A
A
C4'
C3'
C2'
DG
DG
DG
4
4
4
N
5
8.87
0.30
108.30
117.17
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
5
-4.64
0.70
108.00
103.36
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
5
-2.72
0.40
104.50
101.78
A
A
A
O4'
C4'
C3'
DC
DC
DC
6
6
6
N
5
-4.21
0.70
102.20
97.99
A
A
A
C4'
C3'
C2'
DC
DC
DC
6
6
6
N
5
2.45
0.30
108.30
110.75
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
5
9.73
1.20
119.70
129.43
A
A
A
C3'
O3'
P
DC
DC
DG
6
6
7
Y
5
3.66
0.30
108.30
111.96
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
5
-5.06
0.80
105.90
100.84
A
A
A
O4'
C1'
C2'
DC
DC
DC
9
9
9
N
5
-5.74
0.70
108.00
102.26
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
5
-5.49
0.80
105.90
100.41
A
A
A
O4'
C1'
C2'
DA
DA
DA
10
10
10
N
5
9.80
1.20
115.70
125.50
A
A
A
C5'
C4'
C3'
DT
DT
DT
11
11
11
N
5
-5.57
0.80
102.40
96.83
B
B
B
C3'
C2'
C1'
DG
DG
DG
13
13
13
N
5
2.86
0.30
108.30
111.16
B
B
B
O4'
C1'
N9
DG
DG
DG
13
13
13
N
5
-5.31
0.80
105.90
100.59
B
B
B
O4'
C1'
C2'
DT
DT
DT
15
15
15
N
5
-2.68
0.40
104.50
101.82
B
B
B
O4'
C4'
C3'
DG
DG
DG
17
17
17
N
5
-5.09
0.80
102.40
97.31
B
B
B
C3'
C2'
C1'
DC
DC
DC
18
18
18
N
5
-5.89
0.80
105.90
100.01
B
B
B
O4'
C1'
C2'
DC
DC
DC
18
18
18
N
5
6.98
0.30
108.30
115.28
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
5
3.73
0.60
118.90
122.63
B
B
B
N1
C2
O2
DC
DC
DC
19
19
19
N
5
-7.18
0.80
105.90
98.72
B
B
B
O4'
C1'
C2'
DG
DG
DG
20
20
20
N
5
7.96
1.20
119.70
127.66
B
B
B
C3'
O3'
P
DA
DA
DG
21
21
22
Y
6
-4.49
0.70
102.20
97.71
A
A
A
C4'
C3'
C2'
DC
DC
DC
1
1
1
N
6
1.85
0.30
108.30
110.15
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
6
2.22
0.30
108.30
110.52
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
6
-4.64
0.60
122.90
118.26
A
A
A
C6
C5
C7
DT
DT
DT
2
2
2
N
6
-11.31
0.70
108.00
96.69
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
6
-6.17
0.70
102.20
96.03
A
A
A
C4'
C3'
C2'
DG
DG
DG
4
4
4
N
6
-6.16
0.80
105.90
99.74
A
A
A
O4'
C1'
C2'
DG
DG
DG
4
4
4
N
6
9.24
0.30
108.30
117.54
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
6
9.31
1.20
115.70
125.01
A
A
A
C5'
C4'
C3'
DG
DG
DG
5
5
5
N
6
-5.20
0.70
102.20
97.00
A
A
A
C4'
C3'
C2'
DG
DG
DG
5
5
5
N
6
8.30
1.20
119.70
128.00
A
A
A
C3'
O3'
P
DG
DG
DC
5
5
6
Y
6
-4.44
0.70
102.20
97.76
A
A
A
C4'
C3'
C2'
DG
DG
DG
7
7
7
N
6
3.61
0.30
108.30
111.91
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
6
-6.60
0.70
108.00
101.40
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
6
3.72
0.60
118.90
122.62
A
A
A
N1
C2
O2
DC
DC
DC
8
8
8
N
6
2.23
0.30
108.30
110.53
B
B
B
O4'
C1'
N9
DG
DG
DG
13
13
13
N
6
-4.58
0.70
108.00
103.42
B
B
B
O4'
C1'
N9
DA
DA
DA
14
14
14
N
6
-8.51
1.00
110.10
101.59
B
B
B
C1'
O4'
C4'
DT
DT
DT
15
15
15
N
6
5.35
0.30
108.30
113.65
B
B
B
O4'
C1'
N1
DT
DT
DT
15
15
15
N
6
7.51
1.20
119.70
127.21
B
B
B
C3'
O3'
P
DG
DG
DG
16
16
17
Y
6
8.56
1.40
114.30
122.86
B
B
B
N9
C1'
C2'
DG
DG
DG
17
17
17
N
6
-5.30
0.80
102.40
97.10
B
B
B
C3'
C2'
C1'
DC
DC
DC
18
18
18
N
6
-6.47
0.80
105.90
99.43
B
B
B
O4'
C1'
C2'
DC
DC
DC
18
18
18
N
6
3.46
0.30
108.30
111.76
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
6
-8.09
1.00
110.10
102.01
B
B
B
C1'
O4'
C4'
DG
DG
DG
20
20
20
N
6
5.29
0.30
108.30
113.59
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
6
2.43
0.40
105.40
107.83
B
B
B
N9
C4
C5
DG
DG
DG
20
20
20
N
6
10.30
1.20
119.70
130.00
B
B
B
C3'
O3'
P
DG
DG
DA
20
20
21
Y
6
-5.22
0.80
102.40
97.18
B
B
B
C3'
C2'
C1'
DG
DG
DG
22
22
22
N
1
A
A
C5
C7
DT
DT
2
2
0.038
0.006
1.496
1.534
N
1
A
A
C5'
C4'
DG
DG
4
4
0.058
0.007
1.512
1.570
N
1
A
A
C5
C7
DT
DT
11
11
0.039
0.006
1.496
1.535
N
1
B
B
C5
C7
DT
DT
15
15
0.039
0.006
1.496
1.535
N
1
B
B
C5'
C4'
DG
DG
17
17
0.045
0.007
1.512
1.557
N
2
A
A
C5
C7
DT
DT
2
2
0.038
0.006
1.496
1.534
N
3
A
A
C5
C7
DT
DT
2
2
0.041
0.006
1.496
1.537
N
3
A
A
C5
C7
DT
DT
11
11
0.041
0.006
1.496
1.537
N
3
B
B
C5
C7
DT
DT
15
15
0.040
0.006
1.496
1.536
N
4
A
A
C5
C7
DT
DT
2
2
0.038
0.006
1.496
1.534
N
4
A
A
C5'
C4'
DC
DC
6
6
0.048
0.007
1.512
1.560
N
5
A
A
C5
C7
DT
DT
2
2
0.043
0.006
1.496
1.539
N
5
A
A
C5'
C4'
DT
DT
11
11
0.059
0.007
1.512
1.571
N
5
A
A
C5
C7
DT
DT
11
11
0.040
0.006
1.496
1.536
N
6
A
A
C5
C7
DT
DT
2
2
0.037
0.006
1.496
1.533
N
6
A
A
C5'
C4'
DG
DG
5
5
0.053
0.007
1.512
1.565
N
6
A
A
C5
C7
DT
DT
11
11
0.042
0.006
1.496
1.538
N
6
B
B
C5
C7
DT
DT
15
15
0.040
0.006
1.496
1.536
N
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT OPPOSITE A-2 DELETION SITE IN THE NARI HOT SPOT SEQUENCE CONTEXT; NMR, 6 STRUCTURES
1
N
N
2
N
N
3
N
N
covale
1.479
none
A
DG
7
A
C8
DG
7
1_555
A
AF
23
C
N
AF
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
22
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
22
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
22
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DT
2
A
N3
DT
2
1_555
B
DA
21
B
N1
DA
9
1_555
hydrog
WATSON-CRICK
A
DT
2
A
O4
DT
2
1_555
B
DA
21
B
N6
DA
9
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
20
B
N1
DG
8
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
20
B
O6
DG
8
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
20
B
N2
DG
8
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
19
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
19
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
19
B
N4
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N1
DG
5
1_555
B
DC
18
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N2
DG
5
1_555
B
DC
18
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
5
A
O6
DG
5
1_555
B
DC
18
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
B
DG
17
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
B
DG
17
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
B
DG
17
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N3
DC
9
1_555
B
DG
16
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N4
DC
9
1_555
B
DG
16
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
O2
DC
9
1_555
B
DG
16
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DA
10
A
N1
DA
10
1_555
B
DT
15
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
A
DA
10
A
N6
DA
10
1_555
B
DT
15
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
A
DT
11
A
N3
DT
11
1_555
B
DA
14
B
N1
DA
2
1_555
hydrog
WATSON-CRICK
A
DT
11
A
O4
DT
11
1_555
B
DA
14
B
N6
DA
2
1_555
hydrog
WATSON-CRICK
A
DC
12
A
N3
DC
12
1_555
B
DG
13
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
12
A
N4
DC
12
1_555
B
DG
13
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
12
A
O2
DC
12
1_555
B
DG
13
B
N2
DG
1
1_555
DNA
DNA DUPLEX, AMINOFLUORENE ADDUCT, CARCINOGEN ADDUCT, HOT SPOT SEQUENCE, DNA
1AX6
PDB
1
1AX6
1AX6
PDB
2
1AX6
1
12
1AX6
1
12
1AX6
A
1
1
12
13
22
1AX6
13
22
1AX6
B
2
1
10
BINDING SITE FOR RESIDUE AF A 23
A
AF
23
Software
6
A
DG
5
A
DG
5
6
1_555
A
DC
6
A
DC
6
6
1_555
A
DG
7
A
DG
7
6
1_555
A
DC
8
A
DC
8
6
1_555
B
DG
17
B
DG
5
6
1_555
B
DC
18
B
DC
6
6
1_555
1
P 1