1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Mao, B. Gu, Z. Gorin, A.A. Hingerty, B.E. Broyde, S. Patel, D.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C13 H11 N 181.233 2-AMINOFLUORENE non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking US Biochemistry BICHAW 0033 0006-2960 36 14491 14501 10.1021/bi972206r 9398168 Solution structure of the aminofluorene-stacked conformer of the syn [AF]-C8-dG adduct positioned at a template-primer junction. 1997 10.2210/pdb1ax7/pdb pdb_00001ax7 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 N ATOM OF AF-GROUP LINKED TO C8 ATOM OF DG4 3880.552 DNA DUPLEX D(AAC-[AF]G-CTACCATCC)D(GGATGGTAG) 1 syn polymer N ATOM OF AF-GROUP LINKED TO C8 ATOM OF DG4 2835.871 DNA DUPLEX D(AAC-[AF]G-CTACCATCC)D(GGATGGTAG) 1 syn polymer 181.233 2-AMINOFLUORENE 1 syn non-polymer no no (DA)(DA)(DC)(DG)(DC)(DT)(DA)(DC)(DC)(DA)(DT)(DC)(DC) AACGCTACCATCC A polydeoxyribonucleotide no no (DG)(DG)(DA)(DT)(DG)(DG)(DT)(DA)(DG) GGATGGTAG B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n -6.034 1 19 A 5 B 22 11.090 A_DC5:DG22_B 1 -11.288 1.475 -0.419 -0.465 7.724 1 20 A 6 B 21 -3.534 A_DT6:DA21_B 2 -9.694 -0.521 -0.166 -0.130 22.096 1 20 A 7 B 20 0.664 A_DA7:DT20_B 3 -14.887 0.470 0.557 -0.105 20.164 1 19 A 8 B 19 1.712 A_DC8:DG19_B 4 -16.795 0.862 -0.577 -0.192 -14.842 1 19 A 9 B 18 0.945 A_DC9:DG18_B 5 -6.351 0.863 0.287 -0.358 4.896 1 20 A 10 B 17 1.545 A_DA10:DT17_B 6 -6.549 0.488 0.298 -0.192 13.716 1 20 A 11 B 16 3.980 A_DT11:DA16_B 7 -6.245 0.376 0.192 -0.175 21.830 1 19 A 12 B 15 -1.520 A_DC12:DG15_B 8 -10.623 1.260 0.002 -0.485 3.612 1 19 A 13 B 14 0.512 A_DC13:DG14_B 9 5.562 0.766 0.291 -0.280 3.263 19.185 A A 5 6 4.388 B B 22 21 3.227 1.460 -0.818 0.054 AA_DC5DT6:DA21DG22_BB 1 -1.092 3.281 19.099 -0.575 1.906 2.774 40.759 A A 6 7 16.358 B B 21 20 3.013 11.202 -0.038 -0.354 AA_DT6DA7:DT20DA21_BB 2 -7.103 10.372 38.628 -1.635 -0.660 3.213 45.642 A A 7 8 -0.533 B B 20 19 3.177 -0.411 0.475 -0.255 AA_DA7DC8:DG19DT20_BB 3 8.524 -11.047 44.879 -0.293 0.123 4.556 36.589 A A 8 9 -8.335 B B 19 18 4.379 -5.216 0.757 -1.668 AA_DC8DC9:DG18DG19_BB 4 -0.562 0.898 36.223 -1.671 -1.312 2.470 29.111 A A 9 10 8.168 B B 18 17 2.596 4.092 -0.689 -0.788 AA_DC9DA10:DT17DG18_BB 5 -0.343 0.684 28.826 -2.265 1.313 2.901 30.734 A A 10 11 3.082 B B 17 16 2.918 1.632 -0.500 -0.603 AA_DA10DT11:DA16DT17_BB 6 -1.293 2.441 30.665 -1.422 0.718 2.953 43.346 A A 11 12 5.597 B B 16 15 2.983 4.125 0.123 -0.214 AA_DT11DC12:DG15DA16_BB 7 2.973 -4.033 43.061 -0.656 0.097 3.736 42.801 A A 12 13 9.190 B B 15 14 3.835 6.682 0.125 -0.367 AA_DC12DC13:DG14DG15_BB 8 -0.540 0.743 42.297 -1.280 -0.234 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1998-07-01 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1997-10-30 REL REL AF 2-AMINOFLUORENE ALL CONFORMERS PRESENTED 6 6 NOESY COSY TOCSY 7.0 322 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. RELAXATION MATRIX REFINEMENT BRUNGER refinement X-PLOR 3.1 structure solution VNMR structure solution DUPLEX structure solution X-PLOR 500 Varian VARIAN UNITY PLUS 600 Varian VARIAN UNITY PLUS AF 23 3 AF AF 23 A A 1 n 1 DA 1 A A 2 n 2 DA 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A C 5 n 5 DC 5 A T 6 n 6 DT 6 A A 7 n 7 DA 7 A C 8 n 8 DC 8 A C 9 n 9 DC 9 A A 10 n 10 DA 10 A T 11 n 11 DT 11 A C 12 n 12 DC 12 A C 13 n 13 DC 13 A G 14 n 1 DG 14 B G 15 n 2 DG 15 B A 16 n 3 DA 16 B T 17 n 4 DT 17 B G 18 n 5 DG 18 B G 19 n 6 DG 19 B T 20 n 7 DT 20 B A 21 n 8 DA 21 B G 22 n 9 DG 22 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 6 A A O3' H6 DA DC 2 3 1.59 1 -4.03 0.40 104.50 100.47 A A A O4' C4' C3' DA DA DA 2 2 2 N 1 17.27 2.00 112.30 129.57 A A A C4' C3' O3' DA DA DA 2 2 2 N 1 -4.68 0.70 102.20 97.52 A A A C4' C3' C2' DA DA DA 2 2 2 N 1 -4.84 0.80 105.90 101.06 A A A O4' C1' C2' DA DA DA 2 2 2 N 1 12.26 0.30 108.30 120.56 A A A O4' C1' N9 DA DA DA 2 2 2 N 1 -6.20 0.80 105.90 99.70 A A A O4' C1' C2' DC DC DC 3 3 3 N 1 2.74 0.30 108.30 111.04 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 3.63 0.50 113.10 116.73 A A A N7 C8 N9 DG DG DG 4 4 4 N 1 5.22 0.70 120.20 125.42 A A A C5 C4 N4 DC DC DC 5 5 5 N 1 -7.53 0.80 105.90 98.37 A A A O4' C1' C2' DT DT DT 6 6 6 N 1 -5.77 0.70 102.20 96.43 A A A C4' C3' C2' DC DC DC 8 8 8 N 1 -9.03 0.80 105.90 96.87 A A A O4' C1' C2' DC DC DC 9 9 9 N 1 -5.16 0.80 102.40 97.24 A A A C3' C2' C1' DA DA DA 10 10 10 N 1 -4.91 0.70 108.00 103.09 A A A O4' C1' N9 DA DA DA 10 10 10 N 1 -6.86 1.00 110.10 103.24 A A A C1' O4' C4' DT DT DT 11 11 11 N 1 2.46 0.30 108.30 110.76 A A A O4' C1' N1 DC DC DC 12 12 12 N 1 3.76 0.60 118.90 122.66 A A A N1 C2 O2 DC DC DC 12 12 12 N 1 -5.18 0.80 102.40 97.22 B B B C3' C2' C1' DG DG DG 15 15 15 N 1 3.99 0.30 108.30 112.29 B B B O4' C1' N9 DG DG DG 15 15 15 N 1 -4.87 0.80 105.90 101.03 B B B O4' C1' C2' DT DT DT 17 17 17 N 1 -7.12 0.80 102.40 95.28 B B B C3' C2' C1' DG DG DG 18 18 18 N 1 3.31 0.30 108.30 111.61 B B B O4' C1' N9 DG DG DG 18 18 18 N 1 4.46 0.30 108.30 112.76 B B B O4' C1' N9 DG DG DG 19 19 19 N 1 3.96 0.30 108.30 112.26 B B B O4' C1' N1 DT DT DT 20 20 20 N 1 -4.38 0.70 108.00 103.62 B B B O4' C1' N9 DA DA DA 21 21 21 N 1 2.64 0.40 105.40 108.04 B B B N9 C4 C5 DG DG DG 22 22 22 N 2 -5.75 0.70 102.20 96.45 A A A C4' C3' C2' DA DA DA 1 1 1 N 2 -2.55 0.40 104.50 101.95 A A A O4' C4' C3' DA DA DA 2 2 2 N 2 14.14 2.00 112.30 126.44 A A A C4' C3' O3' DA DA DA 2 2 2 N 2 7.32 0.30 108.30 115.62 A A A O4' C1' N9 DA DA DA 2 2 2 N 2 2.49 0.40 105.80 108.29 A A A N9 C4 C5 DA DA DA 2 2 2 N 2 -5.56 0.80 105.90 100.34 A A A O4' C1' C2' DC DC DC 3 3 3 N 2 2.87 0.30 108.30 111.17 A A A O4' C1' N1 DC DC DC 3 3 3 N 2 -4.99 0.70 102.20 97.21 A A A C4' C3' C2' DG DG DG 4 4 4 N 2 3.38 0.50 113.10 116.48 A A A N7 C8 N9 DG DG DG 4 4 4 N 2 9.55 1.20 119.70 129.25 A A A C3' O3' P DG DG DC 4 4 5 Y 2 -4.47 0.70 102.20 97.73 A A A C4' C3' C2' DC DC DC 5 5 5 N 2 4.80 0.30 108.30 113.10 A A A O4' C1' N1 DC DC DC 5 5 5 N 2 5.50 0.70 120.20 125.70 A A A C5 C4 N4 DC DC DC 5 5 5 N 2 -5.14 0.70 108.00 102.86 A A A O4' C1' N1 DT DT DT 6 6 6 N 2 -6.64 0.80 105.90 99.26 A A A O4' C1' C2' DA DA DA 7 7 7 N 2 -5.32 0.70 102.20 96.88 A A A C4' C3' C2' DC DC DC 8 8 8 N 2 -7.67 0.80 105.90 98.23 A A A O4' C1' C2' DC DC DC 9 9 9 N 2 3.82 0.60 118.90 122.72 A A A N1 C2 O2 DC DC DC 9 9 9 N 2 -8.10 1.00 110.10 102.00 A A A C1' O4' C4' DT DT DT 11 11 11 N 2 -4.95 0.60 122.90 117.95 A A A C6 C5 C7 DT DT DT 11 11 11 N 2 7.83 1.20 115.70 123.53 A A A C5' C4' C3' DC DC DC 12 12 12 N 2 -5.53 0.70 102.20 96.67 A A A C4' C3' C2' DC DC DC 12 12 12 N 2 2.06 0.30 108.30 110.36 A A A O4' C1' N1 DC DC DC 12 12 12 N 2 -4.47 0.70 108.00 103.53 A A A O4' C1' N1 DC DC DC 13 13 13 N 2 -6.16 0.80 102.40 96.24 B B B C3' C2' C1' DG DG DG 15 15 15 N 2 -6.03 1.00 110.10 104.07 B B B C1' O4' C4' DT DT DT 17 17 17 N 2 -5.26 0.80 102.40 97.14 B B B C3' C2' C1' DG DG DG 18 18 18 N 2 -5.98 0.80 105.90 99.92 B B B O4' C1' C2' DG DG DG 18 18 18 N 2 -5.75 0.80 105.90 100.15 B B B O4' C1' C2' DT DT DT 20 20 20 N 2 -4.16 0.60 122.90 118.74 B B B C6 C5 C7 DT DT DT 20 20 20 N 2 -3.56 0.40 104.50 100.94 B B B O4' C4' C3' DG DG DG 22 22 22 N 2 2.09 0.30 108.30 110.39 B B B O4' C1' N9 DG DG DG 22 22 22 N 2 3.10 0.40 105.40 108.50 B B B N9 C4 C5 DG DG DG 22 22 22 N 2 -4.24 0.60 126.00 121.76 B B B N3 C4 N9 DG DG DG 22 22 22 N 3 -4.76 0.70 102.20 97.44 A A A C4' C3' C2' DA DA DA 1 1 1 N 3 16.08 2.00 112.30 128.38 A A A C4' C3' O3' DA DA DA 2 2 2 N 3 7.29 0.30 108.30 115.59 A A A O4' C1' N9 DA DA DA 2 2 2 N 3 -6.33 0.80 105.90 99.57 A A A O4' C1' C2' DC DC DC 3 3 3 N 3 3.45 0.30 108.30 111.75 A A A O4' C1' N1 DC DC DC 3 3 3 N 3 -5.12 0.70 102.20 97.08 A A A C4' C3' C2' DG DG DG 4 4 4 N 3 3.61 0.30 108.30 111.91 A A A O4' C1' N9 DG DG DG 4 4 4 N 3 4.01 0.50 113.10 117.11 A A A N7 C8 N9 DG DG DG 4 4 4 N 3 -2.40 0.40 106.40 104.00 A A A C8 N9 C4 DG DG DG 4 4 4 N 3 2.04 0.30 108.30 110.34 A A A O4' C1' N1 DC DC DC 5 5 5 N 3 -6.12 0.70 118.00 111.88 A A A N3 C4 N4 DC DC DC 5 5 5 N 3 6.58 0.70 120.20 126.78 A A A C5 C4 N4 DC DC DC 5 5 5 N 3 -6.04 0.80 105.90 99.86 A A A O4' C1' C2' DT DT DT 6 6 6 N 3 2.50 0.30 108.30 110.80 A A A O4' C1' N1 DT DT DT 6 6 6 N 3 10.65 1.20 115.70 126.35 A A A C5' C4' C3' DC DC DC 8 8 8 N 3 -4.79 0.70 108.00 103.21 A A A O4' C1' N1 DC DC DC 8 8 8 N 3 -6.49 0.80 105.90 99.41 A A A O4' C1' C2' DC DC DC 9 9 9 N 3 -6.84 1.00 110.10 103.26 A A A C1' O4' C4' DT DT DT 11 11 11 N 3 -4.93 0.70 108.00 103.07 A A A O4' C1' N1 DC DC DC 12 12 12 N 3 3.79 0.60 118.90 122.69 A A A N1 C2 O2 DC DC DC 13 13 13 N 3 -4.32 0.70 102.20 97.88 B B B C4' C3' C2' DG DG DG 15 15 15 N 3 3.18 0.30 108.30 111.48 B B B O4' C1' N9 DG DG DG 15 15 15 N 3 -4.81 0.80 105.90 101.09 B B B O4' C1' C2' DT DT DT 17 17 17 N 3 -6.00 0.80 102.40 96.40 B B B C3' C2' C1' DG DG DG 18 18 18 N 3 6.47 0.30 108.30 114.77 B B B O4' C1' N9 DG DG DG 19 19 19 N 3 3.52 0.30 108.30 111.82 B B B O4' C1' N1 DT DT DT 20 20 20 N 3 -5.83 0.80 105.90 100.07 B B B O4' C1' C2' DA DA DA 21 21 21 N 3 2.72 0.30 108.30 111.02 B B B O4' C1' N9 DA DA DA 21 21 21 N 3 2.45 0.40 105.40 107.85 B B B N9 C4 C5 DG DG DG 22 22 22 N 4 6.92 0.30 108.30 115.22 A A A O4' C1' N9 DA DA DA 2 2 2 N 4 3.13 0.40 105.80 108.93 A A A N9 C4 C5 DA DA DA 2 2 2 N 4 -4.94 0.80 127.40 122.46 A A A N3 C4 N9 DA DA DA 2 2 2 N 4 4.41 0.30 108.30 112.71 A A A O4' C1' N1 DC DC DC 3 3 3 N 4 3.06 0.30 108.30 111.36 A A A O4' C1' N9 DG DG DG 4 4 4 N 4 10.27 1.20 119.70 129.97 A A A C3' O3' P DG DG DC 4 4 5 Y 4 -2.97 0.40 104.50 101.53 A A A O4' C4' C3' DC DC DC 5 5 5 N 4 3.13 0.30 108.30 111.43 A A A O4' C1' N1 DC DC DC 5 5 5 N 4 -5.88 0.70 118.00 112.12 A A A N3 C4 N4 DC DC DC 5 5 5 N 4 6.88 0.70 120.20 127.08 A A A C5 C4 N4 DC DC DC 5 5 5 N 4 -4.51 0.60 122.90 118.39 A A A C6 C5 C7 DT DT DT 6 6 6 N 4 -6.96 1.00 110.10 103.14 A A A C1' O4' C4' DA DA DA 7 7 7 N 4 -7.04 0.80 105.90 98.86 A A A O4' C1' C2' DA DA DA 7 7 7 N 4 4.58 0.30 108.30 112.88 A A A O4' C1' N9 DA DA DA 7 7 7 N 4 3.96 0.60 118.90 122.86 A A A N1 C2 O2 DC DC DC 8 8 8 N 4 -8.86 0.80 105.90 97.04 A A A O4' C1' C2' DC DC DC 9 9 9 N 4 2.71 0.30 108.30 111.01 A A A O4' C1' N1 DC DC DC 9 9 9 N 4 4.29 0.60 118.90 123.19 A A A N1 C2 O2 DC DC DC 9 9 9 N 4 -4.89 0.80 102.40 97.51 A A A C3' C2' C1' DA DA DA 10 10 10 N 4 -8.36 1.00 110.10 101.74 A A A C1' O4' C4' DT DT DT 11 11 11 N 4 -5.15 0.80 105.90 100.75 B B B O4' C1' C2' DG DG DG 14 14 14 N 4 3.56 0.30 108.30 111.86 B B B O4' C1' N9 DG DG DG 15 15 15 N 4 -9.78 1.00 110.10 100.32 B B B C1' O4' C4' DT DT DT 17 17 17 N 4 4.19 0.30 108.30 112.49 B B B O4' C1' N1 DT DT DT 17 17 17 N 4 -3.99 0.60 122.90 118.91 B B B C6 C5 C7 DT DT DT 17 17 17 N 4 -6.65 0.80 102.40 95.75 B B B C3' C2' C1' DG DG DG 18 18 18 N 4 3.33 0.30 108.30 111.63 B B B O4' C1' N9 DG DG DG 18 18 18 N 4 7.95 1.20 119.70 127.65 B B B C3' O3' P DG DG DG 18 18 19 Y 4 2.76 0.30 108.30 111.06 B B B O4' C1' N9 DG DG DG 19 19 19 N 4 -7.35 0.80 105.90 98.55 B B B O4' C1' C2' DT DT DT 20 20 20 N 4 -5.05 0.70 108.00 102.95 B B B O4' C1' N1 DT DT DT 20 20 20 N 4 4.34 0.70 124.90 129.24 B B B C5 C4 O4 DT DT DT 20 20 20 N 4 -4.86 0.60 122.90 118.04 B B B C6 C5 C7 DT DT DT 20 20 20 N 4 -6.65 0.80 105.90 99.25 B B B O4' C1' C2' DA DA DA 21 21 21 N 4 1.92 0.30 108.30 110.22 B B B O4' C1' N9 DA DA DA 21 21 21 N 4 10.22 1.20 119.70 129.92 B B B C3' O3' P DA DA DG 21 21 22 Y 4 3.04 0.40 105.40 108.44 B B B N9 C4 C5 DG DG DG 22 22 22 N 4 -3.65 0.60 126.00 122.35 B B B N3 C4 N9 DG DG DG 22 22 22 N 5 -5.21 0.70 102.20 96.99 A A A C4' C3' C2' DA DA DA 1 1 1 N 5 -3.25 0.40 104.50 101.25 A A A O4' C4' C3' DA DA DA 2 2 2 N 5 13.61 2.00 112.30 125.91 A A A C4' C3' O3' DA DA DA 2 2 2 N 5 7.22 0.30 108.30 115.52 A A A O4' C1' N9 DA DA DA 2 2 2 N 5 -6.50 0.80 105.90 99.40 A A A O4' C1' C2' DC DC DC 3 3 3 N 5 3.55 0.30 108.30 111.85 A A A O4' C1' N1 DC DC DC 3 3 3 N 5 -5.58 0.70 102.20 96.62 A A A C4' C3' C2' DG DG DG 4 4 4 N 5 3.64 0.30 108.30 111.94 A A A O4' C1' N9 DG DG DG 4 4 4 N 5 7.89 1.20 115.70 123.59 A A A C5' C4' C3' DC DC DC 5 5 5 N 5 3.78 0.30 108.30 112.08 A A A O4' C1' N1 DC DC DC 5 5 5 N 5 -4.34 0.70 118.00 113.66 A A A N3 C4 N4 DC DC DC 5 5 5 N 5 5.71 0.70 120.20 125.91 A A A C5 C4 N4 DC DC DC 5 5 5 N 5 9.40 1.20 115.70 125.10 A A A C5' C4' C3' DT DT DT 6 6 6 N 5 -4.47 0.70 108.00 103.53 A A A O4' C1' N1 DT DT DT 6 6 6 N 5 -5.47 0.80 105.90 100.43 A A A O4' C1' C2' DA DA DA 7 7 7 N 5 -8.37 0.80 105.90 97.53 A A A O4' C1' C2' DC DC DC 8 8 8 N 5 -4.56 0.70 102.20 97.64 A A A C4' C3' C2' DC DC DC 9 9 9 N 5 2.68 0.30 108.30 110.98 A A A O4' C1' N9 DA DA DA 10 10 10 N 5 -4.82 0.80 105.90 101.08 A A A O4' C1' C2' DC DC DC 12 12 12 N 5 3.20 0.30 108.30 111.50 A A A O4' C1' N1 DC DC DC 12 12 12 N 5 -5.97 0.70 108.00 102.03 A A A O4' C1' N1 DC DC DC 13 13 13 N 5 3.78 0.60 118.90 122.68 A A A N1 C2 O2 DC DC DC 13 13 13 N 5 2.41 0.30 108.30 110.71 B B B O4' C1' N9 DG DG DG 14 14 14 N 5 5.79 0.30 108.30 114.09 B B B O4' C1' N9 DG DG DG 15 15 15 N 5 2.76 0.30 108.30 111.06 B B B O4' C1' N9 DA DA DA 16 16 16 N 5 -5.61 0.80 102.40 96.79 B B B C3' C2' C1' DG DG DG 18 18 18 N 5 4.37 0.30 108.30 112.67 B B B O4' C1' N9 DG DG DG 18 18 18 N 5 7.23 1.20 119.70 126.93 B B B C3' O3' P DG DG DG 18 18 19 Y 5 6.58 0.30 108.30 114.88 B B B O4' C1' N9 DG DG DG 19 19 19 N 5 -4.38 0.70 108.00 103.62 B B B O4' C1' N9 DA DA DA 21 21 21 N 5 -3.21 0.40 104.50 101.29 B B B O4' C4' C3' DG DG DG 22 22 22 N 5 2.58 0.40 105.40 107.98 B B B N9 C4 C5 DG DG DG 22 22 22 N 6 -5.39 0.70 102.20 96.81 A A A C4' C3' C2' DA DA DA 1 1 1 N 6 -6.22 0.40 104.50 98.28 A A A O4' C4' C3' DA DA DA 2 2 2 N 6 17.77 2.00 112.30 130.07 A A A C4' C3' O3' DA DA DA 2 2 2 N 6 9.15 0.30 108.30 117.45 A A A O4' C1' N9 DA DA DA 2 2 2 N 6 -6.47 0.80 105.90 99.43 A A A O4' C1' C2' DC DC DC 3 3 3 N 6 4.72 0.30 108.30 113.02 A A A O4' C1' N1 DC DC DC 3 3 3 N 6 10.86 1.60 120.90 131.76 A A A P O5' C5' DG DG DG 4 4 4 N 6 -5.36 0.40 104.50 99.14 A A A O4' C4' C3' DG DG DG 4 4 4 N 6 3.57 0.50 113.10 116.67 A A A N7 C8 N9 DG DG DG 4 4 4 N 6 -6.04 0.40 104.50 98.46 A A A O4' C4' C3' DC DC DC 5 5 5 N 6 -5.11 0.80 102.40 97.29 A A A C3' C2' C1' DC DC DC 5 5 5 N 6 -6.84 0.80 105.90 99.06 A A A O4' C1' C2' DT DT DT 6 6 6 N 6 -7.36 1.00 110.10 102.74 A A A C1' O4' C4' DA DA DA 7 7 7 N 6 -5.14 0.80 105.90 100.76 A A A O4' C1' C2' DA DA DA 7 7 7 N 6 9.15 0.30 108.30 117.45 A A A O4' C1' N9 DA DA DA 7 7 7 N 6 8.49 1.20 119.70 128.19 A A A C3' O3' P DA DA DC 7 7 8 Y 6 3.80 0.60 118.90 122.70 A A A N1 C2 O2 DC DC DC 8 8 8 N 6 -6.08 0.80 105.90 99.82 A A A O4' C1' C2' DC DC DC 9 9 9 N 6 7.53 0.30 108.30 115.83 A A A O4' C1' N1 DC DC DC 9 9 9 N 6 -4.42 0.70 108.00 103.58 A A A O4' C1' N1 DT DT DT 11 11 11 N 6 4.07 0.60 118.90 122.97 A A A N1 C2 O2 DC DC DC 12 12 12 N 6 -4.35 0.70 102.20 97.85 B B B C4' C3' C2' DG DG DG 14 14 14 N 6 2.06 0.30 108.30 110.36 B B B O4' C1' N9 DG DG DG 14 14 14 N 6 -5.02 0.80 102.40 97.38 B B B C3' C2' C1' DG DG DG 15 15 15 N 6 4.05 0.30 108.30 112.35 B B B O4' C1' N9 DG DG DG 15 15 15 N 6 8.27 1.20 115.70 123.97 B B B C5' C4' C3' DG DG DG 18 18 18 N 6 -6.07 0.80 105.90 99.83 B B B O4' C1' C2' DG DG DG 18 18 18 N 6 11.14 1.20 115.70 126.84 B B B C5' C4' C3' DG DG DG 19 19 19 N 6 5.18 0.30 108.30 113.48 B B B O4' C1' N9 DG DG DG 19 19 19 N 6 9.53 1.20 119.70 129.23 B B B C3' O3' P DA DA DG 21 21 22 Y 6 -5.39 0.40 104.50 99.11 B B B O4' C4' C3' DG DG DG 22 22 22 N 6 2.90 0.30 108.30 111.20 B B B O4' C1' N9 DG DG DG 22 22 22 N 1 A A C8 N9 DG DG 4 4 -0.049 0.007 1.374 1.325 N 1 A A N1 C6 DC DC 5 5 -0.039 0.006 1.367 1.328 N 1 A A C5 C7 DT DT 6 6 0.043 0.006 1.496 1.539 N 1 A A C5' C4' DC DC 8 8 0.049 0.007 1.512 1.561 N 1 A A C5 C7 DT DT 11 11 0.040 0.006 1.496 1.536 N 1 B B C5 C7 DT DT 17 17 0.040 0.006 1.496 1.536 N 2 A A N9 C4 DA DA 2 2 -0.041 0.006 1.374 1.333 N 2 A A C8 N9 DG DG 4 4 -0.046 0.007 1.374 1.328 N 2 A A N1 C6 DC DC 5 5 -0.047 0.006 1.367 1.320 N 2 A A C5 C7 DT DT 6 6 0.039 0.006 1.496 1.535 N 2 A A C5 C7 DT DT 11 11 0.038 0.006 1.496 1.534 N 2 A A C5' C4' DC DC 12 12 0.043 0.007 1.512 1.555 N 2 B B C5 C7 DT DT 17 17 0.043 0.006 1.496 1.539 N 3 A A N9 C4 DA DA 2 2 -0.040 0.006 1.374 1.334 N 3 A A C8 N9 DG DG 4 4 -0.050 0.007 1.374 1.324 N 3 A A N1 C6 DC DC 5 5 -0.044 0.006 1.367 1.323 N 3 A A C5 C7 DT DT 6 6 0.040 0.006 1.496 1.536 N 3 A A C5 C7 DT DT 11 11 0.042 0.006 1.496 1.538 N 3 B B C5 C7 DT DT 17 17 0.046 0.006 1.496 1.542 N 3 B B C5 C7 DT DT 20 20 0.038 0.006 1.496 1.534 N 4 A A N9 C4 DA DA 2 2 -0.045 0.006 1.374 1.329 N 4 A A N1 C6 DC DC 5 5 -0.046 0.006 1.367 1.321 N 4 A A C5 C7 DT DT 6 6 0.046 0.006 1.496 1.542 N 4 A A C5 C7 DT DT 11 11 0.043 0.006 1.496 1.539 N 4 B B C5 C7 DT DT 20 20 0.042 0.006 1.496 1.538 N 5 A A N9 C4 DA DA 2 2 -0.042 0.006 1.374 1.332 N 5 A A C8 N9 DG DG 4 4 -0.053 0.007 1.374 1.321 N 5 A A N1 C6 DC DC 5 5 -0.050 0.006 1.367 1.317 N 5 A A C5' C4' DT DT 6 6 0.054 0.007 1.512 1.566 N 5 A A C5 C7 DT DT 6 6 0.040 0.006 1.496 1.536 N 5 A A C5 C7 DT DT 11 11 0.039 0.006 1.496 1.535 N 5 B B C5 C7 DT DT 20 20 0.039 0.006 1.496 1.535 N 6 A A C8 N9 DG DG 4 4 -0.046 0.007 1.374 1.328 N 6 A A C5' C4' DC DC 5 5 0.050 0.007 1.512 1.562 N 6 A A C5 C7 DT DT 6 6 0.047 0.006 1.496 1.543 N 6 B B P O5' DG DG 19 19 0.065 0.010 1.593 1.658 N 6 B B C5' C4' DG DG 19 19 0.048 0.007 1.512 1.560 N 6 B B C5 C7 DT DT 20 20 0.039 0.006 1.496 1.535 N 6 B B C2' C1' DG DG 22 22 0.062 0.010 1.519 1.581 N model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 SOLUTION STRUCTURE OF THE [AF]-C8-DG ADDUCT POSITIONED AT A TEMPLATE-PRIMER JUNCTION, NMR, 6 STRUCTURES 1 N N 2 N N 3 N N covale 1.454 none A DG 4 A C8 DG 4 1_555 A AF 23 C N AF 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 22 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 22 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 22 B N2 DG 9 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 6 1_555 B DA 21 B N1 DA 8 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 6 1_555 B DA 21 B N6 DA 8 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 20 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 20 B O4 DT 7 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 19 B N1 DG 6 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 19 B O6 DG 6 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 19 B N2 DG 6 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B DG 18 B N1 DG 5 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B DG 18 B O6 DG 5 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B DG 18 B N2 DG 5 1_555 hydrog WATSON-CRICK A DA 10 A N1 DA 10 1_555 B DT 17 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 10 A N6 DA 10 1_555 B DT 17 B O4 DT 4 1_555 hydrog WATSON-CRICK A DT 11 A N3 DT 11 1_555 B DA 16 B N1 DA 3 1_555 hydrog WATSON-CRICK A DT 11 A O4 DT 11 1_555 B DA 16 B N6 DA 3 1_555 hydrog WATSON-CRICK A DC 12 A N3 DC 12 1_555 B DG 15 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 12 A N4 DC 12 1_555 B DG 15 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 12 A O2 DC 12 1_555 B DG 15 B N2 DG 2 1_555 hydrog WATSON-CRICK A DC 13 A N3 DC 13 1_555 B DG 14 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 13 A N4 DC 13 1_555 B DG 14 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 13 A O2 DC 13 1_555 B DG 14 B N2 DG 1 1_555 DNA DNA DUPLEX, AMINOFLUORENE ADDUCT, CARCINOGEN ADDUCT, TEMPLATE-PRIMER JUNCTION, DNA 1AX7 PDB 1 1AX7 1AX7 PDB 2 1AX7 1 13 1AX7 1 13 1AX7 A 1 1 13 14 22 1AX7 14 22 1AX7 B 2 1 9 BINDING SITE FOR RESIDUE AF A 23 A AF 23 Software 4 A DA 2 A DA 2 4 1_555 A DG 4 A DG 4 4 1_555 A DC 5 A DC 5 4 1_555 B DG 22 B DG 9 4 1_555 1 P 1