1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Fletcher, J.I. O'Donoghue, S.I. Nilges, M. King, G.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Struct.Biol. NSBIEW 2024 1072-8368 4 559 566 10.1038/nsb0797-559 9228949 The structure of a novel insecticidal neurotoxin, omega-atracotoxin-HV1, from the venom of an Australian funnel web spider. 1997 Geneva : World Intellectual Property Organization Patent 2152 Wo 93 15108, 05 Aug 1993; Au Appl.92/722, 31 Jan 1992 Insecticidal Toxins Derived from Funnel Web (Atrax or Hadronyche) Spiders 1993 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 4058.448 ATRACOTOXIN-HVI 1 man polymer ACTX-HVI no no SPTCIPSGQPCPYNENCCSQSCTFKENENGNTVKRCD SPTCIPSGQPCPYNENCCSQSCTFKENENGNTVKRCD A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Hadronyche sample 6904 Hadronyche versuta pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list struct_conf struct_conf_type citation repository Initial release Version format compliance Version format compliance Derived calculations Other Database references 1 0 1997-11-12 1 1 2008-03-24 1 2 2011-07-13 1 3 2017-11-29 1 4 2021-02-03 _pdbx_database_status.process_site _citation.journal_abbrev _citation.pdbx_database_id_patent _citation.title Y BNL 1996-11-04 REL REL LOWEST RESIDUAL RESTRAINT VIOLATIONS 100 20 NOESY TOCSY DQF-COSY ECOSY 3.6 298 K INITIAL STRUCTURES (5000) WERE CALCULATED USING THE DISTANCE GEOMETRY PROGRAMME DIANA, USING A SINGLE CYCLE OF REDUNDANT DIHEDRAL ANGLE RESTRAINTS [GUNTERT, P. AND WUTHRICH, K. (1991) J. BIOMOL. NMR 1, 447-456]. THE 100 STRUCTURES WITH LOWEST RESIDUAL RESTRAINT VIOLATIONS WERE THEN REFINED USING DYNAMICAL SIMULATED ANNEALING [NILGES, M. CLORE, G.M. AND GRONENBORN, A.M. (1988) FEBS LETT. 229, 317-324] IN X-PLOR. STRUCTURES WERE CALCULATED USING 419 NON-REDUNDANT INTERPROTON DISTANCE RESTRAINTS, 43 DIHEDRAL-ANGLE RESTRAINTS (27 PHI, 16 CHI1), AND 28 RESTRAINTS DEFINING 14 HYDROGEN BONDS, GIVING AN AVERAGE OF 13.2 RESTRAINTS/RESIDUE. THE ATOMIC RMS DIFFERENCES FOR RESIDUES 4 - 37 OF THE FINAL FAMILY OF 20 CONFORMERS WITH RESPECT TO THE MEAN COORDINATE POSITIONS ARE 0.22 /- 0.06 AND 0.62 +/- 0.08 ANGSTROMS FOR THE BACKBONE AND HEAVY ATOMS, RESPECTIVELY. THE CORRESPONDING PAIRWISE RMS DIFFERENCES ARE 0.31 +/- 0.07 AND 0.90 +/- 0.12 ANGSTROMS. RESIDUES 1 - 3 ARE DISORDERED. THE DEPOSITED STRUCTURES HAVE BEEN SUPERIMPOSED FOR MINIMUM RMSD OVER THE HEAVY ATOMS OF THE MEAN COORDINATE STRUCTURE. THE FIRST STRUCTURE IS THAT WITH THE LOWEST OVERALL ENERGY IN THE SIMPLIFIED ALL-HYDROGEN CHARMM FORCE FIELD AS IMPLEMENTED IN X-PLOR. DISTANCE GEOMETRY AND DYNAMICAL SIMULATED ANNEALING BRUNGER refinement X-PLOR structure solution DIANA structure solution X-PLOR 600 Bruker AMX600 SER 1 n 1 SER 1 A PRO 2 n 2 PRO 2 A THR 3 n 3 THR 3 A CYS 4 n 4 CYS 4 A ILE 5 n 5 ILE 5 A PRO 6 n 6 PRO 6 A SER 7 n 7 SER 7 A GLY 8 n 8 GLY 8 A GLN 9 n 9 GLN 9 A PRO 10 n 10 PRO 10 A CYS 11 n 11 CYS 11 A PRO 12 n 12 PRO 12 A TYR 13 n 13 TYR 13 A ASN 14 n 14 ASN 14 A GLU 15 n 15 GLU 15 A ASN 16 n 16 ASN 16 A CYS 17 n 17 CYS 17 A CYS 18 n 18 CYS 18 A SER 19 n 19 SER 19 A GLN 20 n 20 GLN 20 A SER 21 n 21 SER 21 A CYS 22 n 22 CYS 22 A THR 23 n 23 THR 23 A PHE 24 n 24 PHE 24 A LYS 25 n 25 LYS 25 A GLU 26 n 26 GLU 26 A ASN 27 n 27 ASN 27 A GLU 28 n 28 GLU 28 A ASN 29 n 29 ASN 29 A GLY 30 n 30 GLY 30 A ASN 31 n 31 ASN 31 A THR 32 n 32 THR 32 A VAL 33 n 33 VAL 33 A LYS 34 n 34 LYS 34 A ARG 35 n 35 ARG 35 A CYS 36 n 36 CYS 36 A ASP 37 n 37 ASP 37 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 2 A ARG 35 0.225 SIDE CHAIN 1 A THR 3 -103.75 -154.86 3 A THR 3 -136.45 -48.38 4 A THR 3 -156.02 -49.40 4 A ARG 35 -126.45 -169.42 6 A THR 3 -128.97 -160.04 6 A ARG 35 -110.14 -169.79 7 A THR 3 -95.25 -157.12 7 A ARG 35 -117.81 -169.45 8 A ARG 35 -114.04 -168.50 9 A THR 3 -126.81 -86.90 10 A THR 3 -124.79 -89.46 10 A CYS 4 -48.30 151.25 11 A THR 3 -134.54 -48.59 11 A ARG 35 -112.36 -169.68 12 A THR 3 -148.22 -152.15 12 A CYS 4 -47.54 150.83 13 A THR 3 -153.11 -153.61 13 A CYS 4 -44.81 150.84 15 A THR 3 -141.74 -154.05 15 A ASN 27 -105.95 -169.38 16 A THR 3 -130.71 -154.87 16 A ARG 35 -120.04 -169.14 17 A THR 3 -133.89 -155.42 18 A THR 3 -157.45 -49.94 19 A THR 3 -81.94 -153.55 19 A CYS 4 -46.95 154.07 20 A THR 3 -126.59 -156.37 ATRACOTOXIN-HVI ATRACOTOXIN-HVI FROM HADRONYCHE VERSUTA (AUSTRALIAN FUNNEL-WEB SPIDER, NMR, 20 STRUCTURES 1 Y N A TYR 13 A TYR 13 HELX_P A ASN 16 A ASN 16 5 1 4 disulf 2.020 A CYS 4 A SG CYS 4 1_555 A CYS 18 A SG CYS 18 1_555 disulf 2.021 A CYS 11 A SG CYS 11 1_555 A CYS 22 A SG CYS 22 1_555 disulf 2.021 A CYS 17 A SG CYS 17 1_555 A CYS 36 A SG CYS 36 1_555 NEUROTOXIN NEUROTOXIN, INSECTICIDAL TOXIN, CYSTINE KNOT, FUNNEL-WEB TOT1A_HADVE UNP 1 1 P56207 SPTCIPSGQPCPYNENCCSQSCTFKENENGNTVKRCD 1 37 1AXH 1 37 P56207 A 1 1 37 2 anti-parallel A CYS 22 A CYS 22 A GLU 26 A GLU 26 A THR 32 A THR 32 A CYS 36 A CYS 36 1 P 1