1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Fletcher, J.I.
O'Donoghue, S.I.
Nilges, M.
King, G.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
4
559
566
10.1038/nsb0797-559
9228949
The structure of a novel insecticidal neurotoxin, omega-atracotoxin-HV1, from the venom of an Australian funnel web spider.
1997
Geneva : World Intellectual Property Organization
Patent
2152
Wo 93 15108, 05 Aug 1993; Au Appl.92/722, 31 Jan 1992
Insecticidal Toxins Derived from Funnel Web (Atrax or Hadronyche) Spiders
1993
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
4058.448
ATRACOTOXIN-HVI
1
man
polymer
ACTX-HVI
no
no
SPTCIPSGQPCPYNENCCSQSCTFKENENGNTVKRCD
SPTCIPSGQPCPYNENCCSQSCTFKENENGNTVKRCD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Hadronyche
sample
6904
Hadronyche versuta
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conf
struct_conf_type
citation
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
Database references
1
0
1997-11-12
1
1
2008-03-24
1
2
2011-07-13
1
3
2017-11-29
1
4
2021-02-03
_pdbx_database_status.process_site
_citation.journal_abbrev
_citation.pdbx_database_id_patent
_citation.title
Y
BNL
1996-11-04
REL
REL
LOWEST RESIDUAL RESTRAINT VIOLATIONS
100
20
NOESY
TOCSY
DQF-COSY
ECOSY
3.6
298
K
INITIAL STRUCTURES (5000) WERE CALCULATED USING THE DISTANCE GEOMETRY PROGRAMME DIANA, USING A SINGLE CYCLE OF REDUNDANT DIHEDRAL ANGLE RESTRAINTS [GUNTERT, P. AND WUTHRICH, K. (1991) J. BIOMOL. NMR 1, 447-456]. THE 100 STRUCTURES WITH LOWEST RESIDUAL RESTRAINT VIOLATIONS WERE THEN REFINED USING DYNAMICAL SIMULATED ANNEALING [NILGES, M. CLORE, G.M. AND GRONENBORN, A.M. (1988) FEBS LETT. 229, 317-324] IN X-PLOR. STRUCTURES WERE CALCULATED USING 419 NON-REDUNDANT INTERPROTON DISTANCE RESTRAINTS, 43 DIHEDRAL-ANGLE RESTRAINTS (27 PHI, 16 CHI1), AND 28 RESTRAINTS DEFINING 14 HYDROGEN BONDS, GIVING AN AVERAGE OF 13.2 RESTRAINTS/RESIDUE. THE ATOMIC RMS DIFFERENCES FOR RESIDUES 4 - 37 OF THE FINAL FAMILY OF 20 CONFORMERS WITH RESPECT TO THE MEAN COORDINATE POSITIONS ARE 0.22 /- 0.06 AND 0.62 +/- 0.08 ANGSTROMS FOR THE BACKBONE AND HEAVY ATOMS, RESPECTIVELY. THE CORRESPONDING PAIRWISE RMS DIFFERENCES ARE 0.31 +/- 0.07 AND 0.90 +/- 0.12 ANGSTROMS. RESIDUES 1 - 3 ARE DISORDERED. THE DEPOSITED STRUCTURES HAVE BEEN SUPERIMPOSED FOR MINIMUM RMSD OVER THE HEAVY ATOMS OF THE MEAN COORDINATE STRUCTURE. THE FIRST STRUCTURE IS THAT WITH THE LOWEST OVERALL ENERGY IN THE SIMPLIFIED ALL-HYDROGEN CHARMM FORCE FIELD AS IMPLEMENTED IN X-PLOR.
DISTANCE GEOMETRY AND DYNAMICAL SIMULATED ANNEALING
BRUNGER
refinement
X-PLOR
structure solution
DIANA
structure solution
X-PLOR
600
Bruker
AMX600
SER
1
n
1
SER
1
A
PRO
2
n
2
PRO
2
A
THR
3
n
3
THR
3
A
CYS
4
n
4
CYS
4
A
ILE
5
n
5
ILE
5
A
PRO
6
n
6
PRO
6
A
SER
7
n
7
SER
7
A
GLY
8
n
8
GLY
8
A
GLN
9
n
9
GLN
9
A
PRO
10
n
10
PRO
10
A
CYS
11
n
11
CYS
11
A
PRO
12
n
12
PRO
12
A
TYR
13
n
13
TYR
13
A
ASN
14
n
14
ASN
14
A
GLU
15
n
15
GLU
15
A
ASN
16
n
16
ASN
16
A
CYS
17
n
17
CYS
17
A
CYS
18
n
18
CYS
18
A
SER
19
n
19
SER
19
A
GLN
20
n
20
GLN
20
A
SER
21
n
21
SER
21
A
CYS
22
n
22
CYS
22
A
THR
23
n
23
THR
23
A
PHE
24
n
24
PHE
24
A
LYS
25
n
25
LYS
25
A
GLU
26
n
26
GLU
26
A
ASN
27
n
27
ASN
27
A
GLU
28
n
28
GLU
28
A
ASN
29
n
29
ASN
29
A
GLY
30
n
30
GLY
30
A
ASN
31
n
31
ASN
31
A
THR
32
n
32
THR
32
A
VAL
33
n
33
VAL
33
A
LYS
34
n
34
LYS
34
A
ARG
35
n
35
ARG
35
A
CYS
36
n
36
CYS
36
A
ASP
37
n
37
ASP
37
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
2
A
ARG
35
0.225
SIDE CHAIN
1
A
THR
3
-103.75
-154.86
3
A
THR
3
-136.45
-48.38
4
A
THR
3
-156.02
-49.40
4
A
ARG
35
-126.45
-169.42
6
A
THR
3
-128.97
-160.04
6
A
ARG
35
-110.14
-169.79
7
A
THR
3
-95.25
-157.12
7
A
ARG
35
-117.81
-169.45
8
A
ARG
35
-114.04
-168.50
9
A
THR
3
-126.81
-86.90
10
A
THR
3
-124.79
-89.46
10
A
CYS
4
-48.30
151.25
11
A
THR
3
-134.54
-48.59
11
A
ARG
35
-112.36
-169.68
12
A
THR
3
-148.22
-152.15
12
A
CYS
4
-47.54
150.83
13
A
THR
3
-153.11
-153.61
13
A
CYS
4
-44.81
150.84
15
A
THR
3
-141.74
-154.05
15
A
ASN
27
-105.95
-169.38
16
A
THR
3
-130.71
-154.87
16
A
ARG
35
-120.04
-169.14
17
A
THR
3
-133.89
-155.42
18
A
THR
3
-157.45
-49.94
19
A
THR
3
-81.94
-153.55
19
A
CYS
4
-46.95
154.07
20
A
THR
3
-126.59
-156.37
ATRACOTOXIN-HVI
ATRACOTOXIN-HVI FROM HADRONYCHE VERSUTA (AUSTRALIAN FUNNEL-WEB SPIDER, NMR, 20 STRUCTURES
1
Y
N
A
TYR
13
A
TYR
13
HELX_P
A
ASN
16
A
ASN
16
5
1
4
disulf
2.020
A
CYS
4
A
SG
CYS
4
1_555
A
CYS
18
A
SG
CYS
18
1_555
disulf
2.021
A
CYS
11
A
SG
CYS
11
1_555
A
CYS
22
A
SG
CYS
22
1_555
disulf
2.021
A
CYS
17
A
SG
CYS
17
1_555
A
CYS
36
A
SG
CYS
36
1_555
NEUROTOXIN
NEUROTOXIN, INSECTICIDAL TOXIN, CYSTINE KNOT, FUNNEL-WEB
TOT1A_HADVE
UNP
1
1
P56207
SPTCIPSGQPCPYNENCCSQSCTFKENENGNTVKRCD
1
37
1AXH
1
37
P56207
A
1
1
37
2
anti-parallel
A
CYS
22
A
CYS
22
A
GLU
26
A
GLU
26
A
THR
32
A
THR
32
A
CYS
36
A
CYS
36
1
P 1