1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Liepinsh, E. Otting, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C17 H21 N4 O9 P 456.344 FLAVIN MONONUCLEOTIDE RIBOFLAVIN MONOPHOSPHATE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Struct.Biol. NSBIEW 2024 1072-8368 4 975 979 10.1038/nsb1297-975 9406543 Pathway of chymotrypsin evolution suggested by the structure of the FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F) 1997 10.2210/pdb1axj/pdb pdb_00001axj 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 13153.066 FMN-BINDING PROTEIN 1 man polymer 456.344 FLAVIN MONONUCLEOTIDE 1 syn non-polymer no no MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPG TGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPG TGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Desulfovibrio Desulfovibrio vulgaris MIYAZAKI F Escherichia sample CYTOPLASM 883 Desulfovibrio vulgaris str. 'Miyazaki F' CYTOPLASM 562 Escherichia coli JM109 PMKBT-100 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1998-01-14 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1997-10-16 REL REL FMN FLAVIN MONONUCLEOTIDE LEAST RESTRAINT VIOLATIONS 50 20 NOESY NOESY-15N-HSQC NOESY-13C-HSQC DQF-COSY TOCSY 6.8 309 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. OPAL (LUGINBUHL ET AL.) ALSO WAS USED. distance geometry WUTHRICH refinement DIANA structure solution DIANA structure solution OPAL 600 Bruker DMX600 FMN 123 2 FMN FMN 123 A MET 1 n 1 MET 1 A LEU 2 n 2 LEU 2 A PRO 3 n 3 PRO 3 A GLY 4 n 4 GLY 4 A THR 5 n 5 THR 5 A PHE 6 n 6 PHE 6 A PHE 7 n 7 PHE 7 A GLU 8 n 8 GLU 8 A VAL 9 n 9 VAL 9 A LEU 10 n 10 LEU 10 A LYS 11 n 11 LYS 11 A ASN 12 n 12 ASN 12 A GLU 13 n 13 GLU 13 A GLY 14 n 14 GLY 14 A VAL 15 n 15 VAL 15 A VAL 16 n 16 VAL 16 A ALA 17 n 17 ALA 17 A ILE 18 n 18 ILE 18 A ALA 19 n 19 ALA 19 A THR 20 n 20 THR 20 A GLN 21 n 21 GLN 21 A GLY 22 n 22 GLY 22 A GLU 23 n 23 GLU 23 A ASP 24 n 24 ASP 24 A GLY 25 n 25 GLY 25 A PRO 26 n 26 PRO 26 A HIS 27 n 27 HIS 27 A LEU 28 n 28 LEU 28 A VAL 29 n 29 VAL 29 A ASN 30 n 30 ASN 30 A THR 31 n 31 THR 31 A TRP 32 n 32 TRP 32 A ASN 33 n 33 ASN 33 A SER 34 n 34 SER 34 A TYR 35 n 35 TYR 35 A LEU 36 n 36 LEU 36 A LYS 37 n 37 LYS 37 A VAL 38 n 38 VAL 38 A LEU 39 n 39 LEU 39 A ASP 40 n 40 ASP 40 A GLY 41 n 41 GLY 41 A ASN 42 n 42 ASN 42 A ARG 43 n 43 ARG 43 A ILE 44 n 44 ILE 44 A VAL 45 n 45 VAL 45 A VAL 46 n 46 VAL 46 A PRO 47 n 47 PRO 47 A VAL 48 n 48 VAL 48 A GLY 49 n 49 GLY 49 A GLY 50 n 50 GLY 50 A MET 51 n 51 MET 51 A HIS 52 n 52 HIS 52 A LYS 53 n 53 LYS 53 A THR 54 n 54 THR 54 A GLU 55 n 55 GLU 55 A ALA 56 n 56 ALA 56 A ASN 57 n 57 ASN 57 A VAL 58 n 58 VAL 58 A ALA 59 n 59 ALA 59 A ARG 60 n 60 ARG 60 A ASP 61 n 61 ASP 61 A GLU 62 n 62 GLU 62 A ARG 63 n 63 ARG 63 A VAL 64 n 64 VAL 64 A LEU 65 n 65 LEU 65 A MET 66 n 66 MET 66 A THR 67 n 67 THR 67 A LEU 68 n 68 LEU 68 A GLY 69 n 69 GLY 69 A SER 70 n 70 SER 70 A ARG 71 n 71 ARG 71 A LYS 72 n 72 LYS 72 A VAL 73 n 73 VAL 73 A ALA 74 n 74 ALA 74 A GLY 75 n 75 GLY 75 A ARG 76 n 76 ARG 76 A ASN 77 n 77 ASN 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A GLY 80 n 80 GLY 80 A THR 81 n 81 THR 81 A GLY 82 n 82 GLY 82 A PHE 83 n 83 PHE 83 A LEU 84 n 84 LEU 84 A ILE 85 n 85 ILE 85 A ARG 86 n 86 ARG 86 A GLY 87 n 87 GLY 87 A SER 88 n 88 SER 88 A ALA 89 n 89 ALA 89 A ALA 90 n 90 ALA 90 A PHE 91 n 91 PHE 91 A ARG 92 n 92 ARG 92 A THR 93 n 93 THR 93 A ASP 94 n 94 ASP 94 A GLY 95 n 95 GLY 95 A PRO 96 n 96 PRO 96 A GLU 97 n 97 GLU 97 A PHE 98 n 98 PHE 98 A GLU 99 n 99 GLU 99 A ALA 100 n 100 ALA 100 A ILE 101 n 101 ILE 101 A ALA 102 n 102 ALA 102 A ARG 103 n 103 ARG 103 A PHE 104 n 104 PHE 104 A LYS 105 n 105 LYS 105 A TRP 106 n 106 TRP 106 A ALA 107 n 107 ALA 107 A ARG 108 n 108 ARG 108 A ALA 109 n 109 ALA 109 A ALA 110 n 110 ALA 110 A LEU 111 n 111 LEU 111 A VAL 112 n 112 VAL 112 A ILE 113 n 113 ILE 113 A THR 114 n 114 THR 114 A VAL 115 n 115 VAL 115 A VAL 116 n 116 VAL 116 A SER 117 n 117 SER 117 A ALA 118 n 118 ALA 118 A GLU 119 n 119 GLU 119 A GLN 120 n 120 GLN 120 A THR 121 n 121 THR 121 A LEU 122 n 122 LEU 122 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O HIS 27 A O HIS 27 A N THR 20 A N THR 20 A O ALA 17 A O ALA 17 A N THR 67 A N THR 67 A O VAL 64 A O VAL 64 A N GLY 87 A N GLY 87 A O LEU 84 A O LEU 84 A N GLU 119 A N GLU 119 A O ALA 109 A O ALA 109 A N VAL 48 A N VAL 48 4 A A OE1 HG GLU SER 62 88 1.54 5 A A OE1 HG GLU SER 62 88 1.54 6 A A OE1 HG GLU SER 62 88 1.53 7 A A OE1 HG GLU SER 62 88 1.59 11 A A OE1 HG GLU SER 62 88 1.59 16 A A OE1 HG GLU SER 62 88 1.53 18 A A OE1 HG GLU SER 62 88 1.58 2 A ARG 108 0.085 SIDE CHAIN 3 A ARG 60 0.218 SIDE CHAIN 3 A ARG 103 0.084 SIDE CHAIN 4 A ARG 60 0.133 SIDE CHAIN 4 A ARG 63 0.090 SIDE CHAIN 4 A ARG 108 0.108 SIDE CHAIN 5 A ARG 60 0.157 SIDE CHAIN 5 A ARG 63 0.085 SIDE CHAIN 6 A ARG 60 0.145 SIDE CHAIN 6 A ARG 63 0.095 SIDE CHAIN 6 A ARG 92 0.170 SIDE CHAIN 7 A ARG 76 0.084 SIDE CHAIN 8 A ARG 60 0.099 SIDE CHAIN 8 A ARG 76 0.093 SIDE CHAIN 8 A ARG 108 0.093 SIDE CHAIN 9 A ARG 60 0.124 SIDE CHAIN 9 A ARG 108 0.140 SIDE CHAIN 10 A ARG 60 0.169 SIDE CHAIN 11 A ARG 60 0.220 SIDE CHAIN 11 A ARG 108 0.094 SIDE CHAIN 14 A ARG 60 0.131 SIDE CHAIN 14 A ARG 92 0.245 SIDE CHAIN 15 A ARG 43 0.085 SIDE CHAIN 15 A ARG 60 0.133 SIDE CHAIN 15 A ARG 71 0.140 SIDE CHAIN 15 A ARG 108 0.091 SIDE CHAIN 16 A ARG 60 0.136 SIDE CHAIN 16 A ARG 63 0.092 SIDE CHAIN 17 A HIS 52 0.127 SIDE CHAIN 17 A ARG 60 0.145 SIDE CHAIN 17 A ARG 86 0.088 SIDE CHAIN 17 A ARG 92 0.078 SIDE CHAIN 17 A ARG 108 0.110 SIDE CHAIN 18 A ARG 71 0.242 SIDE CHAIN 19 A ARG 60 0.118 SIDE CHAIN 19 A ARG 92 0.168 SIDE CHAIN 1 10.29 1.40 123.60 133.89 A A A CD NE CZ ARG ARG ARG 92 92 92 N 3 3.41 0.50 120.30 123.71 A A A NE CZ NH1 ARG ARG ARG 92 92 92 N 10 3.02 0.50 120.30 123.32 A A A NE CZ NH2 ARG ARG ARG 60 60 60 N 17 9.79 1.40 123.60 133.39 A A A CD NE CZ ARG ARG ARG 92 92 92 N 17 3.76 0.50 120.30 124.06 A A A NE CZ NH1 ARG ARG ARG 92 92 92 N 19 -3.05 0.50 120.30 117.25 A A A NE CZ NH2 ARG ARG ARG 63 63 63 N 20 3.07 0.50 120.30 123.37 A A A NE CZ NH1 ARG ARG ARG 92 92 92 N 1 A GLU 23 -164.16 -61.68 1 A MET 51 -107.88 71.41 1 A VAL 116 -127.50 -54.99 1 A THR 121 -134.83 -81.04 2 A GLU 23 -161.42 -48.86 2 A ASP 24 -78.44 40.63 2 A ARG 76 -91.81 -78.63 2 A PHE 104 -61.02 -179.00 2 A VAL 116 -130.15 -54.77 2 A THR 121 -135.37 -81.91 3 A GLU 23 -168.98 -48.75 3 A ASP 24 -78.18 38.68 3 A SER 34 -58.48 -8.71 3 A MET 51 -103.39 71.50 3 A HIS 52 -67.28 -70.53 3 A THR 121 -132.98 -58.82 4 A GLU 23 -158.89 -60.33 4 A ASP 24 -78.61 38.84 4 A SER 34 -59.31 -8.66 4 A ASN 42 53.82 13.23 4 A MET 51 -109.75 71.74 4 A PHE 104 -65.55 -174.74 4 A THR 121 -152.84 -58.55 5 A GLU 23 -158.23 -48.24 5 A ASP 24 -78.18 38.48 5 A SER 34 -59.24 -8.81 5 A ASN 42 53.79 13.00 5 A MET 51 -109.23 50.16 5 A LYS 105 -140.89 -0.98 5 A VAL 116 -129.22 -57.14 5 A THR 121 -138.69 -58.49 6 A GLU 23 -158.32 -48.59 6 A ASP 24 -78.61 37.74 6 A ASN 42 54.08 13.06 6 A LYS 105 -141.64 -0.78 6 A THR 121 -130.17 -58.00 7 A GLU 23 -158.66 -48.71 7 A ASP 24 -78.77 38.06 7 A MET 51 -112.11 71.48 7 A THR 121 -129.42 -58.41 8 A GLU 23 -159.63 -61.27 8 A ASP 24 -81.55 38.72 8 A ASN 42 53.84 12.88 8 A MET 51 -108.78 71.23 8 A PRO 79 -69.49 89.73 8 A LYS 105 -141.44 -0.56 8 A VAL 116 -128.57 -56.88 8 A THR 121 -136.86 -77.61 9 A GLU 23 -159.20 -59.33 9 A ASP 24 -78.83 39.21 9 A ASN 42 54.10 13.20 9 A MET 51 -97.96 52.24 9 A THR 121 -129.64 -58.62 10 A GLU 23 168.51 -57.44 10 A ASP 24 -78.70 46.98 10 A ASN 42 53.49 19.87 10 A MET 51 -108.65 71.48 10 A LYS 105 -140.48 21.04 10 A THR 121 -138.45 -81.31 11 A GLU 23 -170.69 -59.25 11 A LYS 105 -141.14 -0.60 11 A THR 121 -143.39 -80.51 12 A GLU 23 -158.63 -60.70 12 A ASP 24 -78.82 41.03 12 A MET 51 -106.56 57.50 12 A PHE 104 -67.88 -171.20 12 A VAL 116 -120.52 -56.27 12 A THR 121 -138.70 -79.49 13 A GLU 23 -159.06 -61.51 13 A ASP 24 -79.40 45.73 13 A MET 51 -105.71 71.13 13 A LYS 105 -141.37 -1.11 13 A THR 121 -137.23 -77.57 14 A GLU 23 -158.82 -56.98 14 A ASP 24 -78.87 38.34 14 A MET 51 -109.12 59.82 14 A LYS 105 -140.55 -1.12 14 A THR 121 -136.99 -58.23 15 A GLU 23 -159.79 -60.74 15 A SER 34 -59.72 -8.97 15 A MET 51 -107.83 71.38 15 A THR 121 -130.27 -78.80 16 A GLU 23 -166.16 -57.25 16 A ASN 42 54.08 12.99 16 A MET 51 -106.57 71.39 16 A LYS 105 -141.39 -0.54 16 A VAL 116 -121.51 -59.88 16 A THR 121 -129.65 -58.31 17 A GLU 23 -158.36 -60.79 17 A ASP 24 -79.28 39.08 17 A ASN 42 54.00 12.87 17 A MET 51 -113.80 53.47 17 A VAL 116 -120.98 -51.11 17 A THR 121 -135.21 -68.60 18 A GLU 23 -163.45 -61.55 18 A ASP 24 -79.73 44.49 18 A ASN 42 53.64 13.72 18 A MET 51 -109.32 66.98 18 A VAL 116 -125.97 -57.26 18 A THR 121 -143.21 -58.60 19 A GLU 23 -158.84 -61.51 19 A ASP 24 -79.35 39.32 19 A ASN 42 53.44 15.35 19 A MET 51 -109.74 57.63 19 A ARG 76 -91.34 -63.64 19 A PRO 79 -68.03 91.43 19 A VAL 116 -126.70 -59.58 19 A THR 121 -133.69 -58.79 20 A GLU 23 -162.54 -48.97 20 A ASP 24 -78.68 39.24 20 A MET 51 -109.78 70.62 20 A THR 121 -141.21 -59.10 FMN-BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (MIYAZAKI F), NMR, 20 STRUCTURES 1 Y N 2 N N A GLY 4 A GLY 4 HELX_P A LEU 10 A LEU 10 1 1 7 A ASN 33 A ASN 33 HELX_P A TYR 35 A TYR 35 5 2 3 A HIS 52 A HIS 52 HELX_P A ARG 60 A ARG 60 1 3 9 A GLY 95 A GLY 95 HELX_P A ALA 102 A ALA 102 1 4 8 BINDING PROTEIN FMN-BINDING PROTEIN, BINDING PROTEIN FMNB_DESVM UNP 1 1 Q46604 MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPG TGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL 1 122 1AXJ 1 122 Q46604 A 1 1 122 6 1 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A HIS 27 A HIS 27 A TRP 32 A TRP 32 A VAL 15 A VAL 15 A THR 20 A THR 20 A ARG 63 A ARG 63 A SER 70 A SER 70 A THR 81 A THR 81 A ARG 92 A ARG 92 A ALA 109 A ALA 109 A GLN 120 A GLN 120 A ARG 43 A ARG 43 A VAL 48 A VAL 48 A LYS 37 A LYS 37 A VAL 38 A VAL 38 FMN BINDING SITE. Unknown 8 BINDING SITE FOR RESIDUE FMN A 123 A FMN 123 Software 15 A TRP 32 A TRP 32 8 1_555 A THR 31 A THR 31 8 1_555 A ASN 30 A ASN 30 8 1_555 A TRP 106 A TRP 106 8 1_555 A PRO 47 A PRO 47 8 1_555 A VAL 48 A VAL 48 8 1_555 A GLY 50 A GLY 50 8 1_555 A LYS 53 A LYS 53 8 1_555 A HIS 27 A HIS 27 15 1_555 A VAL 29 A VAL 29 15 1_555 A ASN 30 A ASN 30 15 1_555 A THR 31 A THR 31 15 1_555 A TRP 32 A TRP 32 15 1_555 A TYR 35 A TYR 35 15 1_555 A PRO 47 A PRO 47 15 1_555 A VAL 48 A VAL 48 15 1_555 A GLY 49 A GLY 49 15 1_555 A GLY 50 A GLY 50 15 1_555 A MET 51 A MET 51 15 1_555 A HIS 52 A HIS 52 15 1_555 A LYS 53 A LYS 53 15 1_555 A THR 54 A THR 54 15 1_555 A TRP 106 A TRP 106 15 1_555 1 P 1