1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Feng, B.
Gorin, A.A.
Kolbanovskiy, A.
Hingerty, B.E.
Geacintov, N.E.
Broyde, S.
Patel, D.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C20 H16 O3
304.339
1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
US
Biochemistry
BICHAW
0033
0006-2960
36
13780
13790
10.1021/bi970070r
9374854
Solution conformation of the (-)-trans-anti-[BP]dG adduct opposite a deletion site in a DNA duplex: intercalation of the covalently attached benzo[a]pyrene into the helix with base displacement of the modified deoxyguanosine into the minor groove.
1997
10.2210/pdb1axl/pdb
pdb_00001axl
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
D(C1-C2-A3-T4-C5-[BP]G6-C7-T8-A9-C10-C11) D (G11-G12-T13-A14-G15--G16-A17-T18-G19-G20) WITH CC10 ATOM OF BP LINKED TO N2 ATOM OF DG6
3254.138
DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG)
1
syn
polymer
D(C1-C2-A3-T4-C5-[BP]G6-C7-T8-A9-C10-C11) D (G11-G12-T13-A14-G15--G16-A17-T18-G19-G20) WITH CC10 ATOM OF BP LINKED TO N2 ATOM OF DG6
3165.076
DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG)
1
syn
polymer
304.339
1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE
1
syn
non-polymer
no
no
(DC)(DC)(DA)(DT)(DC)(DG)(DC)(DT)(DA)(DC)(DC)
CCATCGCTACC
A
polydeoxyribonucleotide
no
no
(DG)(DG)(DT)(DA)(DG)(DG)(DA)(DT)(DG)(DG)
GGTAGGATGG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-18.365
1
19
A
1
B
21
1.303
A_DC1:DG21_B
1
-2.736
1.102
0.551
-0.338
-11.235
1
19
A
2
B
20
1.559
A_DC2:DG20_B
2
1.658
0.935
0.439
-0.325
13.780
1
20
A
3
B
19
15.013
A_DA3:DT19_B
3
-4.399
-0.163
0.316
-0.051
18.679
1
20
A
4
B
18
2.131
A_DT4:DA18_B
4
-21.291
-0.099
-0.437
-0.158
20.415
1
19
A
5
B
17
-5.466
A_DC5:DG17_B
5
-10.512
1.146
-0.097
-0.482
-26.299
1
19
A
7
B
16
-2.219
A_DC7:DG16_B
6
12.797
0.104
0.707
-0.058
-2.025
1
20
A
8
B
15
2.136
A_DT8:DA15_B
7
2.136
-0.634
0.470
-0.230
7.016
1
20
A
9
B
14
-3.790
A_DA9:DT14_B
8
-31.488
0.867
0.193
-0.250
-15.623
1
19
A
10
B
13
2.163
A_DC10:DG13_B
9
-20.167
1.012
0.180
-0.441
-24.160
1
19
A
11
B
12
1.254
A_DC11:DG12_B
10
11.769
1.356
0.438
-0.453
3.061
41.789
A
A
1
2
5.168
B
B
21
20
2.975
3.668
0.495
0.666
AA_DC1DC2:DG20DG21_BB
1
6.440
-9.072
41.156
0.576
-0.065
2.543
38.384
A
A
2
3
-18.004
B
B
20
19
2.724
-11.641
1.588
0.721
AA_DC2DA3:DT19DG20_BB
2
4.129
-6.385
36.413
2.299
-1.989
2.821
40.063
A
A
3
4
-6.665
B
B
19
18
2.870
-4.549
-0.638
-0.465
AA_DA3DT4:DA18DT19_BB
3
4.351
-6.376
39.586
-0.223
1.366
3.258
52.206
A
A
4
5
10.672
B
B
18
17
3.282
9.347
-0.751
0.121
AA_DT4DC5:DG17DA18_BB
4
-0.166
0.189
51.420
-0.487
0.842
5.934
32.635
A
A
5
7
30.441
B
B
17
16
7.303
16.174
-0.792
0.037
AA_DC5DC7:DG16DG17_BB
5
8.316
-15.652
27.213
-6.169
4.616
2.720
25.336
A
A
7
8
10.236
B
B
16
15
2.758
4.454
0.231
-0.019
AA_DC7DT8:DA15DG16_BB
6
3.387
-7.785
24.720
-1.136
0.305
2.786
50.146
A
A
8
9
-12.180
B
B
15
14
3.067
-10.253
-0.607
0.939
AA_DT8DA9:DT14DA15_BB
7
3.355
-3.986
49.045
1.777
0.935
3.603
41.557
A
A
9
10
-3.743
B
B
14
13
3.483
-2.651
0.881
-1.175
AA_DA9DC10:DG13DT14_BB
8
3.169
-4.473
41.360
-1.350
-0.877
3.705
33.439
A
A
10
11
-0.538
B
B
13
12
3.699
-0.309
0.270
-0.266
AA_DC10DC11:DG12DG13_BB
9
0.469
-0.815
33.435
-0.404
-0.382
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1998-07-01
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1997-10-16
REL
REL
BAP
1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE
ALL CONFORMERS WERE INCLUDED
6
6
NOESY
COSY
TOCSY
DQF-COSY
7.0
317
K
REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE.
molecular dynamics
BRUNGER
refinement
X-PLOR
3.1
structure solution
VNMR
structure solution
DUPLEX
structure solution
X-PLOR
500
Varian
VARIAN UNITY PLUS
600
Varian
VARIAN UNITY PLUS
BP
22
3
BAP
BAP
22
A
C
1
n
1
DC
1
A
C
2
n
2
DC
2
A
A
3
n
3
DA
3
A
T
4
n
4
DT
4
A
C
5
n
5
DC
5
A
G
6
n
6
DG
6
A
C
7
n
7
DC
7
A
T
8
n
8
DT
8
A
A
9
n
9
DA
9
A
C
10
n
10
DC
10
A
C
11
n
11
DC
11
A
G
12
n
1
DG
12
B
G
13
n
2
DG
13
B
T
14
n
3
DT
14
B
A
15
n
4
DA
15
B
G
16
n
5
DG
16
B
G
17
n
6
DG
17
B
A
18
n
7
DA
18
B
T
19
n
8
DT
19
B
G
20
n
9
DG
20
B
G
21
n
10
DG
21
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
C1'
BAP
22
WRONG HAND
1
A
C2'
BAP
22
WRONG HAND
1
A
C3'
BAP
22
WRONG HAND
2
A
C1'
BAP
22
WRONG HAND
2
A
C2'
BAP
22
WRONG HAND
2
A
C3'
BAP
22
WRONG HAND
3
A
C1'
BAP
22
WRONG HAND
3
A
C2'
BAP
22
WRONG HAND
3
A
C3'
BAP
22
WRONG HAND
4
A
C1'
BAP
22
WRONG HAND
4
A
C2'
BAP
22
WRONG HAND
4
A
C3'
BAP
22
WRONG HAND
5
A
C1'
BAP
22
WRONG HAND
5
A
C2'
BAP
22
WRONG HAND
5
A
C3'
BAP
22
WRONG HAND
6
A
C1'
BAP
22
WRONG HAND
6
A
C2'
BAP
22
WRONG HAND
6
A
C3'
BAP
22
WRONG HAND
1
A
A
N2
C6
DG
BAP
6
22
2.16
2
A
B
H1
OP1
DG
DT
6
19
1.58
1
-5.89
0.80
102.40
96.51
A
A
A
C3'
C2'
C1'
DC
DC
DC
2
2
2
N
1
-4.10
0.60
118.60
114.50
A
A
A
N1
C6
N6
DA
DA
DA
3
3
3
N
1
7.93
1.20
115.70
123.63
A
A
A
C5'
C4'
C3'
DT
DT
DT
4
4
4
N
1
-4.80
0.80
102.40
97.60
A
A
A
C3'
C2'
C1'
DT
DT
DT
4
4
4
N
1
2.64
0.30
108.30
110.94
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
1
9.43
1.40
114.30
123.73
A
A
A
N1
C1'
C2'
DC
DC
DC
5
5
5
N
1
4.19
0.60
118.90
123.09
A
A
A
N1
C2
O2
DC
DC
DC
5
5
5
N
1
-7.41
0.40
104.50
97.09
A
A
A
O4'
C4'
C3'
DC
DC
DC
7
7
7
N
1
6.14
0.90
103.10
109.24
A
A
A
C4'
C3'
C2'
DC
DC
DC
7
7
7
N
1
-8.75
0.80
102.40
93.65
A
A
A
C3'
C2'
C1'
DC
DC
DC
7
7
7
N
1
8.80
0.30
108.30
117.10
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
1
4.21
0.60
118.90
123.11
A
A
A
N1
C2
O2
DC
DC
DC
7
7
7
N
1
-5.01
0.80
105.90
100.89
A
A
A
O4'
C1'
C2'
DT
DT
DT
8
8
8
N
1
3.10
0.30
108.30
111.40
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
-5.18
0.70
102.20
97.02
A
A
A
C4'
C3'
C2'
DC
DC
DC
11
11
11
N
1
6.35
0.30
108.30
114.65
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
1
-6.51
0.80
105.90
99.39
B
B
B
O4'
C1'
C2'
DG
DG
DG
13
13
13
N
1
2.13
0.30
108.30
110.43
B
B
B
O4'
C1'
N9
DG
DG
DG
13
13
13
N
1
-10.48
0.70
108.00
97.52
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
1
-6.43
0.40
104.50
98.07
B
B
B
O4'
C4'
C3'
DG
DG
DG
16
16
16
N
1
12.46
2.00
112.30
124.76
B
B
B
C4'
C3'
O3'
DG
DG
DG
16
16
16
N
1
3.05
0.30
108.30
111.35
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
1
7.38
1.20
119.70
127.08
B
B
B
C3'
O3'
P
DG
DG
DG
16
16
17
Y
1
8.06
0.30
108.30
116.36
B
B
B
O4'
C1'
N9
DG
DG
DG
17
17
17
N
1
7.67
1.20
115.70
123.37
B
B
B
C5'
C4'
C3'
DA
DA
DA
18
18
18
N
1
-4.27
0.70
102.20
97.93
B
B
B
C4'
C3'
C2'
DA
DA
DA
18
18
18
N
1
-4.80
0.80
102.40
97.60
B
B
B
C3'
C2'
C1'
DA
DA
DA
18
18
18
N
1
-8.09
0.80
102.40
94.31
B
B
B
C3'
C2'
C1'
DT
DT
DT
19
19
19
N
1
-7.46
0.70
108.00
100.54
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
1
-3.86
0.60
119.90
116.04
B
B
B
N3
C4
O4
DT
DT
DT
19
19
19
N
1
5.89
0.70
124.90
130.79
B
B
B
C5
C4
O4
DT
DT
DT
19
19
19
N
1
-5.35
0.70
102.20
96.85
B
B
B
C4'
C3'
C2'
DG
DG
DG
20
20
20
N
1
-5.78
0.70
108.00
102.22
B
B
B
O4'
C1'
N9
DG
DG
DG
21
21
21
N
2
-5.21
0.80
102.40
97.19
A
A
A
C3'
C2'
C1'
DC
DC
DC
2
2
2
N
2
-5.72
0.70
108.00
102.28
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
2
3.23
0.30
108.30
111.53
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
2
3.83
0.60
118.60
122.43
A
A
A
C6
N1
C2
DA
DA
DA
3
3
3
N
2
-5.15
0.80
102.40
97.25
A
A
A
C3'
C2'
C1'
DT
DT
DT
4
4
4
N
2
-5.38
0.80
105.90
100.52
A
A
A
O4'
C1'
C2'
DC
DC
DC
5
5
5
N
2
9.57
1.40
114.30
123.87
A
A
A
N1
C1'
C2'
DC
DC
DC
5
5
5
N
2
3.47
0.30
108.30
111.77
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
2
-3.39
0.40
104.50
101.11
A
A
A
O4'
C4'
C3'
DC
DC
DC
7
7
7
N
2
-6.23
0.80
102.40
96.17
A
A
A
C3'
C2'
C1'
DC
DC
DC
7
7
7
N
2
3.06
0.50
106.80
109.86
A
A
A
O4'
C1'
C2'
DC
DC
DC
7
7
7
N
2
6.70
0.30
108.30
115.00
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
2
2.19
0.30
108.30
110.49
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
2
-3.80
0.60
122.90
119.10
A
A
A
C6
C5
C7
DT
DT
DT
8
8
8
N
2
2.25
0.30
108.30
110.55
B
B
B
O4'
C1'
N9
DG
DG
DG
13
13
13
N
2
11.86
1.20
119.70
131.56
B
B
B
C3'
O3'
P
DA
DA
DG
15
15
16
Y
2
-7.22
0.80
105.90
98.68
B
B
B
O4'
C1'
C2'
DG
DG
DG
16
16
16
N
2
5.15
0.30
108.30
113.45
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
2
9.10
0.30
108.30
117.40
B
B
B
O4'
C1'
N9
DG
DG
DG
17
17
17
N
2
10.84
1.20
115.70
126.54
B
B
B
C5'
C4'
C3'
DA
DA
DA
18
18
18
N
2
-5.41
0.80
102.40
96.99
B
B
B
C3'
C2'
C1'
DA
DA
DA
18
18
18
N
2
9.95
1.40
114.30
124.25
B
B
B
N9
C1'
C2'
DA
DA
DA
18
18
18
N
2
11.81
1.20
119.70
131.51
B
B
B
C3'
O3'
P
DA
DA
DT
18
18
19
Y
2
-10.24
0.80
102.40
92.16
B
B
B
C3'
C2'
C1'
DT
DT
DT
19
19
19
N
2
-5.28
0.70
108.00
102.72
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
2
-3.77
0.60
119.90
116.13
B
B
B
N3
C4
O4
DT
DT
DT
19
19
19
N
2
6.11
0.70
124.90
131.01
B
B
B
C5
C4
O4
DT
DT
DT
19
19
19
N
3
4.75
0.60
118.90
123.65
A
A
A
N1
C2
O2
DC
DC
DC
2
2
2
N
3
-5.26
0.80
105.90
100.64
A
A
A
O4'
C1'
C2'
DA
DA
DA
3
3
3
N
3
3.14
0.30
108.30
111.44
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
3
9.60
1.20
115.70
125.30
A
A
A
C5'
C4'
C3'
DT
DT
DT
4
4
4
N
3
-2.99
0.40
104.50
101.51
A
A
A
O4'
C4'
C3'
DC
DC
DC
5
5
5
N
3
-5.09
0.70
102.20
97.11
A
A
A
C4'
C3'
C2'
DC
DC
DC
5
5
5
N
3
8.67
1.40
114.30
122.97
A
A
A
N1
C1'
C2'
DC
DC
DC
5
5
5
N
3
7.68
1.20
119.70
127.38
A
A
A
C3'
O3'
P
DG
DG
DC
6
6
7
Y
3
-6.07
0.80
102.40
96.33
A
A
A
C3'
C2'
C1'
DC
DC
DC
7
7
7
N
3
3.47
0.50
106.80
110.27
A
A
A
O4'
C1'
C2'
DC
DC
DC
7
7
7
N
3
8.78
1.40
114.30
123.08
A
A
A
N1
C1'
C2'
DC
DC
DC
7
7
7
N
3
5.66
0.30
108.30
113.96
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
3
3.81
0.30
108.30
112.11
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
3
4.23
0.60
118.90
123.13
A
A
A
N1
C2
O2
DC
DC
DC
10
10
10
N
3
-5.97
0.80
105.90
99.93
B
B
B
O4'
C1'
C2'
DT
DT
DT
14
14
14
N
3
-5.57
0.80
105.90
100.33
B
B
B
O4'
C1'
C2'
DA
DA
DA
15
15
15
N
3
-3.86
0.40
104.50
100.64
B
B
B
O4'
C4'
C3'
DG
DG
DG
16
16
16
N
3
-4.93
0.70
102.20
97.27
B
B
B
C4'
C3'
C2'
DG
DG
DG
16
16
16
N
3
5.23
0.30
108.30
113.53
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
3
12.38
1.60
120.90
133.28
B
B
B
P
O5'
C5'
DG
DG
DG
17
17
17
N
3
-5.60
0.80
105.90
100.30
B
B
B
O4'
C1'
C2'
DG
DG
DG
17
17
17
N
3
3.18
0.30
108.30
111.48
B
B
B
O4'
C1'
N9
DG
DG
DG
17
17
17
N
3
-6.62
0.80
102.40
95.78
B
B
B
C3'
C2'
C1'
DT
DT
DT
19
19
19
N
3
-4.24
0.70
108.00
103.76
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
4
-5.07
0.80
105.90
100.83
A
A
A
O4'
C1'
C2'
DC
DC
DC
1
1
1
N
4
-5.61
0.70
108.00
102.39
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
4
-3.18
0.40
104.50
101.32
A
A
A
O4'
C4'
C3'
DC
DC
DC
5
5
5
N
4
-7.17
0.80
102.40
95.23
A
A
A
C3'
C2'
C1'
DC
DC
DC
5
5
5
N
4
-5.50
0.80
105.90
100.40
A
A
A
O4'
C1'
C2'
DC
DC
DC
5
5
5
N
4
4.28
0.70
119.90
124.18
A
A
A
N3
C2
N2
DG
DG
DG
6
6
6
N
4
7.88
0.30
108.30
116.18
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
4
9.75
1.20
115.70
125.45
A
A
A
C5'
C4'
C3'
DA
DA
DA
9
9
9
N
4
-5.15
0.70
102.20
97.05
A
A
A
C4'
C3'
C2'
DA
DA
DA
9
9
9
N
4
2.08
0.30
108.30
110.38
B
B
B
O4'
C1'
N9
DG
DG
DG
13
13
13
N
4
-6.03
0.70
108.00
101.97
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
4
-7.02
0.70
108.00
100.98
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
4
9.90
1.20
119.70
129.60
B
B
B
C3'
O3'
P
DA
DA
DG
15
15
16
Y
4
-7.72
0.80
105.90
98.18
B
B
B
O4'
C1'
C2'
DG
DG
DG
16
16
16
N
4
2.51
0.30
108.30
110.81
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
4
6.73
1.10
109.80
116.53
B
B
B
C5'
C4'
O4'
DG
DG
DG
17
17
17
N
4
-6.77
0.80
105.90
99.13
B
B
B
O4'
C1'
C2'
DG
DG
DG
17
17
17
N
4
2.49
0.30
108.30
110.79
B
B
B
O4'
C1'
N9
DG
DG
DG
17
17
17
N
4
-8.10
0.80
102.40
94.30
B
B
B
C3'
C2'
C1'
DT
DT
DT
19
19
19
N
4
-6.17
0.80
105.90
99.73
B
B
B
O4'
C1'
C2'
DG
DG
DG
21
21
21
N
5
-5.50
0.80
102.40
96.90
A
A
A
C3'
C2'
C1'
DC
DC
DC
2
2
2
N
5
-4.71
0.70
108.00
103.29
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
5
-5.49
0.80
105.90
100.41
A
A
A
O4'
C1'
C2'
DT
DT
DT
4
4
4
N
5
-5.82
0.40
104.50
98.68
A
A
A
O4'
C4'
C3'
DC
DC
DC
5
5
5
N
5
-3.26
0.40
104.50
101.24
A
A
A
O4'
C4'
C3'
DC
DC
DC
7
7
7
N
5
-5.29
0.80
102.40
97.11
A
A
A
C3'
C2'
C1'
DC
DC
DC
7
7
7
N
5
7.99
0.30
108.30
116.29
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
5
-8.11
0.80
105.90
97.79
A
A
A
O4'
C1'
C2'
DT
DT
DT
8
8
8
N
5
6.12
0.30
108.30
114.42
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
5
3.99
0.60
118.90
122.89
A
A
A
N1
C2
O2
DC
DC
DC
11
11
11
N
5
-6.74
0.70
108.00
101.26
B
B
B
O4'
C1'
N1
DT
DT
DT
14
14
14
N
5
-4.30
0.40
104.50
100.20
B
B
B
O4'
C4'
C3'
DG
DG
DG
16
16
16
N
5
-6.35
0.70
102.20
95.85
B
B
B
C4'
C3'
C2'
DG
DG
DG
16
16
16
N
5
6.49
0.30
108.30
114.79
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
5
8.39
1.20
119.70
128.09
B
B
B
C3'
O3'
P
DG
DG
DG
16
16
17
Y
5
9.53
0.30
108.30
117.83
B
B
B
O4'
C1'
N9
DG
DG
DG
17
17
17
N
5
-4.36
0.70
102.20
97.84
B
B
B
C4'
C3'
C2'
DA
DA
DA
18
18
18
N
5
-2.42
0.40
104.50
102.08
B
B
B
O4'
C4'
C3'
DT
DT
DT
19
19
19
N
5
-7.91
0.80
102.40
94.49
B
B
B
C3'
C2'
C1'
DT
DT
DT
19
19
19
N
5
-5.47
0.70
102.20
96.73
B
B
B
C4'
C3'
C2'
DG
DG
DG
20
20
20
N
5
-7.31
0.70
108.00
100.69
B
B
B
O4'
C1'
N9
DG
DG
DG
21
21
21
N
6
-8.13
0.70
108.00
99.87
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
6
-5.12
0.80
102.40
97.28
A
A
A
C3'
C2'
C1'
DT
DT
DT
4
4
4
N
6
8.45
1.20
119.70
128.15
A
A
A
C3'
O3'
P
DT
DT
DC
4
4
5
Y
6
-5.81
0.40
104.50
98.69
A
A
A
O4'
C4'
C3'
DC
DC
DC
5
5
5
N
6
-5.37
0.70
102.20
96.83
A
A
A
C4'
C3'
C2'
DC
DC
DC
5
5
5
N
6
6.91
0.30
108.30
115.21
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
6
3.77
0.60
118.90
122.67
A
A
A
N1
C2
O2
DC
DC
DC
7
7
7
N
6
4.93
0.30
108.30
113.23
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
6
-4.84
0.80
102.40
97.56
A
A
A
C3'
C2'
C1'
DC
DC
DC
11
11
11
N
6
5.48
0.30
108.30
113.78
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
6
2.84
0.30
108.30
111.14
B
B
B
O4'
C1'
N9
DG
DG
DG
13
13
13
N
6
9.99
1.20
119.70
129.69
B
B
B
C3'
O3'
P
DA
DA
DG
15
15
16
Y
6
-5.84
0.40
104.50
98.66
B
B
B
O4'
C4'
C3'
DG
DG
DG
16
16
16
N
6
12.35
2.00
112.30
124.65
B
B
B
C4'
C3'
O3'
DG
DG
DG
16
16
16
N
6
4.19
0.30
108.30
112.49
B
B
B
O4'
C1'
N9
DG
DG
DG
16
16
16
N
6
-9.13
0.80
102.40
93.27
B
B
B
C3'
C2'
C1'
DT
DT
DT
19
19
19
N
6
-5.35
0.70
108.00
102.65
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
6
4.21
0.70
124.90
129.11
B
B
B
C5
C4
O4
DT
DT
DT
19
19
19
N
6
-5.54
0.70
102.20
96.66
B
B
B
C4'
C3'
C2'
DG
DG
DG
20
20
20
N
6
-7.50
0.70
108.00
100.50
B
B
B
O4'
C1'
N9
DG
DG
DG
21
21
21
N
1
A
A
P
O5'
DT
DT
4
4
0.063
0.010
1.593
1.656
N
1
A
A
C5'
C4'
DT
DT
4
4
0.065
0.007
1.512
1.577
N
1
A
A
C5
C7
DT
DT
4
4
0.043
0.006
1.496
1.539
N
1
A
A
C5
C7
DT
DT
8
8
0.041
0.006
1.496
1.537
N
1
B
B
C5
C7
DT
DT
14
14
0.037
0.006
1.496
1.533
N
1
B
B
C5'
C4'
DA
DA
18
18
0.053
0.007
1.512
1.565
N
1
B
B
C5
C7
DT
DT
19
19
0.039
0.006
1.496
1.535
N
2
A
A
C5
C7
DT
DT
4
4
0.037
0.006
1.496
1.533
N
2
A
A
C5
C7
DT
DT
8
8
0.041
0.006
1.496
1.537
N
2
B
B
C5'
C4'
DA
DA
18
18
0.047
0.007
1.512
1.559
N
2
B
B
C5
C7
DT
DT
19
19
0.037
0.006
1.496
1.533
N
3
A
A
C5'
C4'
DT
DT
4
4
0.053
0.007
1.512
1.565
N
3
A
A
C5
C7
DT
DT
4
4
0.042
0.006
1.496
1.538
N
3
A
A
C5
C7
DT
DT
8
8
0.038
0.006
1.496
1.534
N
3
B
B
C5
C7
DT
DT
14
14
0.047
0.006
1.496
1.543
N
3
B
B
C5
C7
DT
DT
19
19
0.038
0.006
1.496
1.534
N
4
A
A
C5
C7
DT
DT
4
4
0.043
0.006
1.496
1.539
N
4
A
A
C5
C7
DT
DT
8
8
0.039
0.006
1.496
1.535
N
4
A
A
C5'
C4'
DA
DA
9
9
0.047
0.007
1.512
1.559
N
4
B
B
C5
C7
DT
DT
14
14
0.051
0.006
1.496
1.547
N
5
A
A
C5
C7
DT
DT
4
4
0.049
0.006
1.496
1.545
N
5
A
A
C5
C7
DT
DT
8
8
0.040
0.006
1.496
1.536
N
5
B
B
C5
C7
DT
DT
14
14
0.047
0.006
1.496
1.543
N
5
B
B
C5
C7
DT
DT
19
19
0.039
0.006
1.496
1.535
N
6
B
B
C5
C7
DT
DT
14
14
0.053
0.006
1.496
1.549
N
6
B
B
C5
C7
DT
DT
19
19
0.041
0.006
1.496
1.537
N
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
SOLUTION CONFORMATION OF THE (-)-TRANS-ANTI-[BP]DG ADDUCT OPPOSITE A DELETION SITE IN DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG), NMR, 6 STRUCTURES
1
N
N
2
N
N
3
N
N
covale
1.479
none
A
DG
6
A
N2
DG
6
1_555
A
BAP
22
C
C4'
BAP
1_555
hydrog
DC-DG PAIR
A
DC
1
A
N4
DC
1
1_555
B
DG
20
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
21
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
21
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
21
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
20
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
20
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
20
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
B
DT
19
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
B
DT
19
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
B
DA
18
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
B
DA
18
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
17
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
17
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
17
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N3
DC
7
1_555
B
DG
16
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N4
DC
7
1_555
B
DG
16
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
7
A
O2
DC
7
1_555
B
DG
16
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
15
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
15
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DA
9
A
N1
DA
9
1_555
B
DT
14
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
A
DA
9
A
N6
DA
9
1_555
B
DT
14
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
A
DC
10
A
N3
DC
10
1_555
B
DG
13
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
10
A
N4
DC
10
1_555
B
DG
13
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
10
A
O2
DC
10
1_555
B
DG
13
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
11
1_555
B
DG
12
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
11
1_555
B
DG
12
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
11
1_555
B
DG
12
B
N2
DG
1
1_555
DNA
DEOXYRIBONUCLEIC ACID, DNA, BENZO[A]PYRENE, CARCINOGEN
1AXL
PDB
1
1AXL
1AXL
PDB
2
1AXL
1
11
1AXL
1
11
1AXL
A
1
1
11
12
21
1AXL
12
21
1AXL
B
2
1
10
BINDING SITE FOR RESIDUE BAP A 22
A
BAP
22
Software
5
A
DC
5
A
DC
5
5
1_555
A
DG
6
A
DG
6
5
1_555
A
DC
7
A
DC
7
5
1_555
B
DG
16
B
DG
5
5
1_555
B
DG
17
B
DG
6
5
1_555
1
P 1