1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Feng, B. Gorin, A.A. Hingerty, B.E. Geacintov, N.E. Broyde, S. Patel, D.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C20 H16 O3 304.339 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking US Biochemistry BICHAW 0033 0006-2960 36 13769 13779 10.1021/bi970069s 9374853 Structural alignment of the (+)-trans-anti-benzo[a]pyrene-dG adduct positioned opposite dC at a DNA template-primer junction. 1997 10.2210/pdb1axo/pdb pdb_00001axo 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 DCC10 ATOM OF BP LINKED TO N2 ATOM OF DG4 3880.552 DNA DUPLEX D(AAC-[BP]G-CTACCATCC)D(GGATGGTAGC) 1 syn polymer DCC10 ATOM OF BP LINKED TO N2 ATOM OF DG4 3125.052 DNA DUPLEX D(AAC-[BP]G-CTACCATCC)D(GGATGGTAGC) 1 syn polymer 304.339 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE 1 syn non-polymer no no (DA)(DA)(DC)(DG)(DC)(DT)(DA)(DC)(DC)(DA)(DT)(DC)(DC) AACGCTACCATCC A polydeoxyribonucleotide no no (DG)(DG)(DA)(DT)(DG)(DG)(DT)(DA)(DG)(DC) GGATGGTAGC B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n -24.197 1 19 A 4 B 23 0.040 A_DG4:DC23_B 1 -19.320 -1.309 -0.638 -0.396 -11.555 1 19 A 5 B 22 -0.866 A_DC5:DG22_B 2 3.004 1.109 0.317 -0.567 16.822 1 20 A 6 B 21 3.080 A_DT6:DA21_B 3 -14.101 -0.195 -0.325 -0.105 20.739 1 20 A 7 B 20 6.293 A_DA7:DT20_B 4 -18.574 0.570 0.266 -0.057 30.600 1 19 A 8 B 19 6.601 A_DC8:DG19_B 5 -30.085 0.516 -0.728 0.006 -14.488 1 19 A 9 B 18 1.454 A_DC9:DG18_B 6 -4.333 0.789 0.002 -0.230 -0.521 1 20 A 10 B 17 3.969 A_DA10:DT17_B 7 -11.918 0.269 0.147 -0.146 15.770 1 20 A 11 B 16 2.872 A_DT11:DA16_B 8 -13.675 -0.044 -0.182 -0.118 18.645 1 19 A 12 B 15 0.812 A_DC12:DG15_B 9 -6.189 0.929 -0.694 -0.344 -4.297 1 19 A 13 B 14 -0.492 A_DC13:DG14_B 10 16.811 1.122 0.133 -0.527 2.827 45.084 A A 4 5 3.996 B B 23 22 2.920 3.025 0.048 0.490 AA_DG4DC5:DG22DC23_BB 1 -12.598 16.642 43.276 0.395 -1.079 2.238 20.488 A A 5 6 8.572 B B 22 21 2.340 3.017 0.465 -0.838 AA_DC5DT6:DA21DG22_BB 2 4.136 -11.751 19.845 -3.309 -0.001 3.494 31.184 A A 6 7 0.106 B B 21 20 3.445 0.057 0.990 -1.181 AA_DT6DA7:DT20DA21_BB 3 1.825 -3.396 31.132 -2.208 -1.472 2.774 39.023 A A 7 8 -2.641 B B 20 19 2.819 -1.754 -0.094 -0.490 AA_DA7DC8:DG19DT20_BB 4 7.288 -10.973 38.324 -0.551 0.899 4.778 43.839 A A 8 9 3.774 B B 19 18 4.874 2.814 -0.105 -1.351 AA_DC8DC9:DG18DG19_BB 5 -3.259 4.371 43.637 -2.205 -0.317 3.270 30.143 A A 9 10 1.817 B B 18 17 3.375 0.944 -0.990 -0.464 AA_DC9DA10:DT17DG18_BB 6 2.452 -4.721 30.031 -1.088 2.412 2.777 32.907 A A 10 11 -10.342 B B 17 16 2.874 -5.826 0.100 0.243 AA_DA10DT11:DA16DT17_BB 7 -2.059 3.655 32.338 1.295 -0.484 3.337 44.839 A A 11 12 -0.799 B B 16 15 3.303 -0.609 0.464 -0.408 AA_DT11DC12:DG15DA16_BB 8 4.313 -5.662 44.637 -0.479 -0.210 3.181 37.712 A A 12 13 23.863 B B 15 14 4.061 15.021 0.106 -1.466 AA_DC12DC13:DG14DG15_BB 9 1.475 -2.342 34.660 -4.519 0.057 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1998-07-01 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1997-10-16 REL REL BAP 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE ALL CONFORMERS WERE INCLUDED 6 6 NOESY COSY TOCSY DQF-COSY 7.0 317 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. RELAXATION MATRIX REFINEMENT BRUNGER refinement X-PLOR 3.1 structure solution VNMR structure solution DUPLEX structure solution X-PLOR 500 Varian VARIAN UNITY PLUS 600 Varian VARIAN UNITY PLUS BP 4 3 BAP BAP 14 A A 1 n 1 DA 1 A A 2 n 2 DA 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A C 5 n 5 DC 5 A T 6 n 6 DT 6 A A 7 n 7 DA 7 A C 8 n 8 DC 8 A C 9 n 9 DC 9 A A 10 n 10 DA 10 A T 11 n 11 DT 11 A C 12 n 12 DC 12 A C 13 n 13 DC 13 A G 14 n 1 DG 14 B G 15 n 2 DG 15 B A 16 n 3 DA 16 B T 17 n 4 DT 17 B G 18 n 5 DG 18 B G 19 n 6 DG 19 B T 20 n 7 DT 20 B A 21 n 8 DA 21 B G 22 n 9 DG 22 B C 23 n 10 DC 23 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A H5' O2' DT BAP 6 14 1.49 1 A A N2 C6 DG BAP 4 14 2.12 2 A A N2 C6 DG BAP 4 14 2.14 3 A A N2 C6 DG BAP 4 14 2.17 4 A A N2 C6 DG BAP 4 14 2.09 5 A A N2 C6 DG BAP 4 14 2.18 6 A A H5' O2' DT BAP 6 14 1.58 6 A A N2 C6 DG BAP 4 14 2.09 1 -4.39 0.70 102.20 97.81 A A A C4' C3' C2' DA DA DA 1 1 1 N 1 -8.63 0.80 105.90 97.27 A A A O4' C1' C2' DA DA DA 1 1 1 N 1 -4.87 0.70 102.20 97.33 A A A C4' C3' C2' DA DA DA 2 2 2 N 1 -6.18 0.70 108.00 101.82 A A A O4' C1' N9 DA DA DA 2 2 2 N 1 12.32 1.20 115.70 128.02 A A A C5' C4' C3' DG DG DG 4 4 4 N 1 11.55 1.40 114.30 125.85 A A A N9 C1' C2' DG DG DG 4 4 4 N 1 -13.38 0.70 108.00 94.62 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 4.93 0.70 119.90 124.83 A A A N3 C2 N2 DG DG DG 4 4 4 N 1 7.89 1.30 127.00 134.89 A A A C8 N9 C1' DG DG DG 4 4 4 N 1 9.70 1.20 119.70 129.40 A A A C3' O3' P DG DG DC 4 4 5 Y 1 -7.57 1.00 110.10 102.53 A A A C1' O4' C4' DC DC DC 5 5 5 N 1 -5.43 0.80 105.90 100.47 A A A O4' C1' C2' DT DT DT 6 6 6 N 1 5.61 0.30 108.30 113.91 A A A O4' C1' N9 DA DA DA 7 7 7 N 1 10.98 1.20 115.70 126.68 A A A C5' C4' C3' DC DC DC 8 8 8 N 1 4.94 0.30 108.30 113.24 A A A O4' C1' N1 DC DC DC 8 8 8 N 1 -4.53 0.70 102.20 97.67 A A A C4' C3' C2' DC DC DC 9 9 9 N 1 3.54 0.30 108.30 111.84 A A A O4' C1' N1 DC DC DC 9 9 9 N 1 -6.47 0.80 105.90 99.43 A A A O4' C1' C2' DA DA DA 10 10 10 N 1 -4.27 0.70 108.00 103.73 A A A O4' C1' N9 DA DA DA 10 10 10 N 1 -6.62 1.00 110.10 103.48 A A A C1' O4' C4' DT DT DT 11 11 11 N 1 6.18 0.30 108.30 114.48 A A A O4' C1' N1 DT DT DT 11 11 11 N 1 -5.36 0.60 122.90 117.54 A A A C6 C5 C7 DT DT DT 11 11 11 N 1 2.89 0.30 108.30 111.19 B B B O4' C1' N9 DG DG DG 14 14 14 N 1 -5.92 0.70 102.20 96.28 B B B C4' C3' C2' DG DG DG 15 15 15 N 1 4.94 0.30 108.30 113.24 B B B O4' C1' N9 DG DG DG 15 15 15 N 1 2.94 0.30 108.30 111.24 B B B O4' C1' N9 DA DA DA 16 16 16 N 1 -7.46 0.80 105.90 98.44 B B B O4' C1' C2' DT DT DT 17 17 17 N 1 -3.78 0.60 122.90 119.12 B B B C6 C5 C7 DT DT DT 17 17 17 N 1 -6.23 0.80 102.40 96.17 B B B C3' C2' C1' DG DG DG 18 18 18 N 1 -6.11 0.80 102.40 96.29 B B B C3' C2' C1' DA DA DA 21 21 21 N 1 -3.24 0.40 104.50 101.26 B B B O4' C4' C3' DG DG DG 22 22 22 N 1 4.95 0.30 108.30 113.25 B B B O4' C1' N9 DG DG DG 22 22 22 N 1 8.13 1.20 119.70 127.83 B B B C3' O3' P DG DG DC 22 22 23 Y 1 4.24 0.60 118.90 123.14 B B B N1 C2 O2 DC DC DC 23 23 23 N 2 -9.81 0.80 105.90 96.09 A A A O4' C1' C2' DA DA DA 1 1 1 N 2 7.92 1.20 119.70 127.62 A A A C3' O3' P DA DA DA 1 1 2 Y 2 7.59 1.20 115.70 123.29 A A A C5' C4' C3' DA DA DA 2 2 2 N 2 -4.56 0.70 102.20 97.64 A A A C4' C3' C2' DA DA DA 2 2 2 N 2 -6.16 0.80 102.40 96.24 A A A C3' C2' C1' DC DC DC 3 3 3 N 2 5.75 0.30 108.30 114.05 A A A O4' C1' N1 DC DC DC 3 3 3 N 2 9.03 1.20 115.70 124.73 A A A C5' C4' C3' DG DG DG 4 4 4 N 2 10.22 1.40 114.30 124.52 A A A N9 C1' C2' DG DG DG 4 4 4 N 2 -3.50 0.40 106.40 102.90 A A A C8 N9 C4 DG DG DG 4 4 4 N 2 4.44 0.70 119.90 124.34 A A A N3 C2 N2 DG DG DG 4 4 4 N 2 8.88 1.20 119.70 128.58 A A A C3' O3' P DG DG DC 4 4 5 Y 2 -2.96 0.40 104.50 101.54 A A A O4' C4' C3' DC DC DC 5 5 5 N 2 -7.12 1.00 110.10 102.98 A A A C1' O4' C4' DC DC DC 5 5 5 N 2 -5.59 0.80 105.90 100.31 A A A O4' C1' C2' DT DT DT 6 6 6 N 2 -4.81 0.80 105.90 101.09 A A A O4' C1' C2' DA DA DA 7 7 7 N 2 3.85 0.30 108.30 112.15 A A A O4' C1' N9 DA DA DA 7 7 7 N 2 8.58 1.20 115.70 124.28 A A A C5' C4' C3' DC DC DC 8 8 8 N 2 2.60 0.30 108.30 110.90 A A A O4' C1' N1 DC DC DC 8 8 8 N 2 3.79 0.60 118.90 122.69 A A A N1 C2 O2 DC DC DC 8 8 8 N 2 11.24 1.20 119.70 130.94 A A A C3' O3' P DC DC DA 9 9 10 Y 2 -6.55 0.80 105.90 99.35 A A A O4' C1' C2' DA DA DA 10 10 10 N 2 -5.06 0.70 108.00 102.94 A A A O4' C1' N9 DA DA DA 10 10 10 N 2 3.81 0.30 108.30 112.11 A A A O4' C1' N1 DT DT DT 11 11 11 N 2 3.76 0.60 119.00 122.76 A A A C4 C5 C7 DT DT DT 11 11 11 N 2 -6.79 0.60 122.90 116.11 A A A C6 C5 C7 DT DT DT 11 11 11 N 2 4.26 0.60 118.90 123.16 A A A N1 C2 O2 DC DC DC 13 13 13 N 2 -5.03 0.70 102.20 97.17 B B B C4' C3' C2' DG DG DG 14 14 14 N 2 -5.10 0.80 105.90 100.80 B B B O4' C1' C2' DG DG DG 14 14 14 N 2 9.37 1.20 119.70 129.07 B B B C3' O3' P DG DG DG 14 14 15 Y 2 -4.53 0.70 102.20 97.67 B B B C4' C3' C2' DG DG DG 15 15 15 N 2 1.83 0.30 108.30 110.13 B B B O4' C1' N9 DA DA DA 16 16 16 N 2 -6.65 0.80 105.90 99.25 B B B O4' C1' C2' DT DT DT 17 17 17 N 2 -5.73 0.60 122.90 117.17 B B B C6 C5 C7 DT DT DT 17 17 17 N 2 -6.56 0.80 102.40 95.84 B B B C3' C2' C1' DG DG DG 18 18 18 N 2 -5.63 0.80 105.90 100.27 B B B O4' C1' C2' DG DG DG 18 18 18 N 2 8.79 1.20 119.70 128.49 B B B C3' O3' P DG DG DG 18 18 19 Y 2 -4.91 0.80 105.90 100.99 B B B O4' C1' C2' DG DG DG 19 19 19 N 2 -4.80 0.70 102.20 97.40 B B B C4' C3' C2' DT DT DT 20 20 20 N 2 2.88 0.30 108.30 111.18 B B B O4' C1' N1 DT DT DT 20 20 20 N 2 -4.08 0.60 122.30 118.22 B B B N3 C2 O2 DT DT DT 20 20 20 N 2 -6.97 0.70 108.00 101.03 B B B O4' C1' N9 DA DA DA 21 21 21 N 2 -3.46 0.40 104.50 101.04 B B B O4' C4' C3' DG DG DG 22 22 22 N 3 -7.15 0.80 105.90 98.75 A A A O4' C1' C2' DA DA DA 1 1 1 N 3 8.63 1.20 119.70 128.33 A A A C3' O3' P DA DA DA 1 1 2 Y 3 8.35 1.20 115.70 124.05 A A A C5' C4' C3' DC DC DC 3 3 3 N 3 7.65 1.20 119.70 127.35 A A A C3' O3' P DC DC DG 3 3 4 Y 3 -4.01 0.40 104.50 100.49 A A A O4' C4' C3' DG DG DG 4 4 4 N 3 16.05 1.20 115.70 131.75 A A A C5' C4' C3' DG DG DG 4 4 4 N 3 -9.00 0.70 108.00 99.00 A A A O4' C1' N9 DG DG DG 4 4 4 N 3 -2.43 0.40 106.40 103.97 A A A C8 N9 C4 DG DG DG 4 4 4 N 3 4.82 0.70 119.90 124.72 A A A N3 C2 N2 DG DG DG 4 4 4 N 3 9.55 1.30 127.00 136.55 A A A C8 N9 C1' DG DG DG 4 4 4 N 3 9.31 1.20 115.70 125.01 A A A C5' C4' C3' DC DC DC 5 5 5 N 3 -6.06 1.00 110.10 104.04 A A A C1' O4' C4' DC DC DC 5 5 5 N 3 -6.49 0.80 105.90 99.41 A A A O4' C1' C2' DC DC DC 5 5 5 N 3 -5.44 0.80 105.90 100.46 A A A O4' C1' C2' DT DT DT 6 6 6 N 3 1.80 0.30 108.30 110.10 A A A O4' C1' N1 DT DT DT 6 6 6 N 3 -3.62 0.60 122.90 119.28 A A A C6 C5 C7 DT DT DT 6 6 6 N 3 8.94 1.20 115.70 124.64 A A A C5' C4' C3' DC DC DC 8 8 8 N 3 -4.97 0.80 102.40 97.43 A A A C3' C2' C1' DC DC DC 9 9 9 N 3 -5.11 0.80 105.90 100.79 A A A O4' C1' C2' DC DC DC 9 9 9 N 3 -4.41 0.70 102.20 97.79 A A A C4' C3' C2' DA DA DA 10 10 10 N 3 -4.98 0.80 105.90 100.92 A A A O4' C1' C2' DA DA DA 10 10 10 N 3 3.09 0.30 108.30 111.39 A A A O4' C1' N1 DT DT DT 11 11 11 N 3 -4.29 0.60 122.90 118.61 A A A C6 C5 C7 DT DT DT 11 11 11 N 3 -4.92 0.80 105.90 100.98 B B B O4' C1' C2' DG DG DG 14 14 14 N 3 2.70 0.30 108.30 111.00 B B B O4' C1' N9 DG DG DG 14 14 14 N 3 -5.57 0.70 102.20 96.63 B B B C4' C3' C2' DG DG DG 15 15 15 N 3 4.57 0.30 108.30 112.87 B B B O4' C1' N9 DG DG DG 15 15 15 N 3 2.36 0.30 108.30 110.66 B B B O4' C1' N9 DA DA DA 16 16 16 N 3 -5.12 0.80 105.90 100.78 B B B O4' C1' C2' DT DT DT 17 17 17 N 3 -4.72 0.60 122.90 118.18 B B B C6 C5 C7 DT DT DT 17 17 17 N 3 -5.37 0.80 102.40 97.03 B B B C3' C2' C1' DG DG DG 18 18 18 N 3 4.63 0.30 108.30 112.93 B B B O4' C1' N9 DG DG DG 18 18 18 N 3 3.02 0.30 108.30 111.32 B B B O4' C1' N1 DT DT DT 20 20 20 N 3 -3.09 0.40 104.50 101.41 B B B O4' C4' C3' DG DG DG 22 22 22 N 3 3.78 0.60 118.90 122.68 B B B N1 C2 O2 DC DC DC 23 23 23 N 4 -6.78 0.80 105.90 99.12 A A A O4' C1' C2' DA DA DA 1 1 1 N 4 -4.84 0.70 102.20 97.36 A A A C4' C3' C2' DA DA DA 2 2 2 N 4 -8.46 0.70 108.00 99.54 A A A O4' C1' N9 DA DA DA 2 2 2 N 4 2.80 0.30 108.30 111.10 A A A O4' C1' N1 DC DC DC 3 3 3 N 4 -4.22 0.70 102.20 97.98 A A A C4' C3' C2' DG DG DG 4 4 4 N 4 -4.80 0.80 105.90 101.10 A A A O4' C1' C2' DG DG DG 4 4 4 N 4 9.56 1.40 114.30 123.86 A A A N9 C1' C2' DG DG DG 4 4 4 N 4 -9.19 0.70 108.00 98.81 A A A O4' C1' N9 DG DG DG 4 4 4 N 4 -2.91 0.40 106.40 103.49 A A A C8 N9 C4 DG DG DG 4 4 4 N 4 -6.07 0.90 116.20 110.13 A A A N1 C2 N2 DG DG DG 4 4 4 N 4 4.56 0.70 119.90 124.46 A A A N3 C2 N2 DG DG DG 4 4 4 N 4 7.96 1.30 127.00 134.96 A A A C8 N9 C1' DG DG DG 4 4 4 N 4 -7.67 0.80 105.90 98.23 A A A O4' C1' C2' DC DC DC 5 5 5 N 4 -7.15 0.80 105.90 98.75 A A A O4' C1' C2' DT DT DT 6 6 6 N 4 -3.67 0.60 122.30 118.63 A A A N3 C2 O2 DT DT DT 6 6 6 N 4 -5.54 0.80 105.90 100.36 A A A O4' C1' C2' DA DA DA 7 7 7 N 4 2.52 0.30 108.30 110.82 A A A O4' C1' N9 DA DA DA 7 7 7 N 4 -6.46 0.80 105.90 99.44 A A A O4' C1' C2' DC DC DC 8 8 8 N 4 2.34 0.30 108.30 110.64 A A A O4' C1' N1 DC DC DC 8 8 8 N 4 -6.29 0.80 105.90 99.61 A A A O4' C1' C2' DA DA DA 10 10 10 N 4 4.07 0.30 108.30 112.37 A A A O4' C1' N1 DT DT DT 11 11 11 N 4 -6.37 0.60 122.90 116.53 A A A C6 C5 C7 DT DT DT 11 11 11 N 4 -4.21 0.70 108.00 103.79 A A A O4' C1' N1 DC DC DC 13 13 13 N 4 -5.23 0.80 102.40 97.17 B B B C3' C2' C1' DG DG DG 14 14 14 N 4 -4.91 0.80 105.90 100.99 B B B O4' C1' C2' DG DG DG 14 14 14 N 4 2.71 0.30 108.30 111.01 B B B O4' C1' N9 DG DG DG 14 14 14 N 4 -4.42 0.70 102.20 97.78 B B B C4' C3' C2' DG DG DG 15 15 15 N 4 -4.94 0.60 122.90 117.96 B B B C6 C5 C7 DT DT DT 17 17 17 N 4 -5.41 0.80 102.40 96.99 B B B C3' C2' C1' DG DG DG 18 18 18 N 4 -5.74 0.80 105.90 100.16 B B B O4' C1' C2' DG DG DG 18 18 18 N 4 3.40 0.30 108.30 111.70 B B B O4' C1' N9 DG DG DG 18 18 18 N 4 -3.76 0.60 122.90 119.14 B B B C6 C5 C7 DT DT DT 20 20 20 N 4 -5.63 0.80 105.90 100.27 B B B O4' C1' C2' DA DA DA 21 21 21 N 4 -4.86 0.70 108.00 103.14 B B B O4' C1' N9 DG DG DG 22 22 22 N 4 3.71 0.60 118.90 122.61 B B B N1 C2 O2 DC DC DC 23 23 23 N 5 9.10 1.20 115.70 124.80 A A A C5' C4' C3' DA DA DA 1 1 1 N 5 -6.26 0.80 105.90 99.64 A A A O4' C1' C2' DA DA DA 1 1 1 N 5 7.85 1.20 115.70 123.55 A A A C5' C4' C3' DA DA DA 2 2 2 N 5 -4.96 0.70 102.20 97.24 A A A C4' C3' C2' DA DA DA 2 2 2 N 5 8.29 1.20 115.70 123.99 A A A C5' C4' C3' DG DG DG 4 4 4 N 5 10.65 1.40 114.30 124.95 A A A N9 C1' C2' DG DG DG 4 4 4 N 5 -9.97 0.70 108.00 98.03 A A A O4' C1' N9 DG DG DG 4 4 4 N 5 -2.55 0.40 106.40 103.85 A A A C8 N9 C4 DG DG DG 4 4 4 N 5 -5.66 0.90 116.20 110.54 A A A N1 C2 N2 DG DG DG 4 4 4 N 5 5.60 0.70 119.90 125.50 A A A N3 C2 N2 DG DG DG 4 4 4 N 5 -5.55 0.80 105.90 100.35 A A A O4' C1' C2' DC DC DC 5 5 5 N 5 7.54 1.20 115.70 123.24 A A A C5' C4' C3' DT DT DT 6 6 6 N 5 -4.92 0.70 108.00 103.08 A A A O4' C1' N1 DT DT DT 6 6 6 N 5 11.06 1.20 115.70 126.76 A A A C5' C4' C3' DC DC DC 8 8 8 N 5 2.93 0.30 108.30 111.23 A A A O4' C1' N1 DC DC DC 8 8 8 N 5 -4.24 0.70 102.20 97.96 A A A C4' C3' C2' DC DC DC 9 9 9 N 5 4.05 0.30 108.30 112.35 A A A O4' C1' N1 DC DC DC 9 9 9 N 5 -5.85 0.80 105.90 100.05 A A A O4' C1' C2' DA DA DA 10 10 10 N 5 -7.42 0.70 108.00 100.58 A A A O4' C1' N9 DA DA DA 10 10 10 N 5 -7.53 1.00 110.10 102.57 A A A C1' O4' C4' DT DT DT 11 11 11 N 5 3.61 0.30 108.30 111.91 A A A O4' C1' N1 DT DT DT 11 11 11 N 5 4.27 0.60 119.00 123.27 A A A C4 C5 C7 DT DT DT 11 11 11 N 5 -6.89 0.60 122.90 116.01 A A A C6 C5 C7 DT DT DT 11 11 11 N 5 -5.11 0.70 102.20 97.09 B B B C4' C3' C2' DG DG DG 14 14 14 N 5 -4.76 0.70 102.20 97.44 B B B C4' C3' C2' DG DG DG 15 15 15 N 5 -5.81 0.80 105.90 100.09 B B B O4' C1' C2' DG DG DG 18 18 18 N 5 3.43 0.30 108.30 111.73 B B B O4' C1' N9 DG DG DG 18 18 18 N 5 9.17 1.20 119.70 128.87 B B B C3' O3' P DG DG DG 18 18 19 Y 5 -4.35 0.70 108.00 103.65 B B B O4' C1' N1 DT DT DT 20 20 20 N 5 -6.26 0.70 108.00 101.74 B B B O4' C1' N9 DA DA DA 21 21 21 N 5 -3.47 0.40 104.50 101.03 B B B O4' C4' C3' DG DG DG 22 22 22 N 5 4.91 0.30 108.30 113.21 B B B O4' C1' N9 DG DG DG 22 22 22 N 6 -5.87 0.80 105.90 100.03 A A A O4' C1' C2' DA DA DA 1 1 1 N 6 9.30 1.20 119.70 129.00 A A A C3' O3' P DA DA DA 1 1 2 Y 6 10.73 1.60 120.90 131.63 A A A P O5' C5' DA DA DA 2 2 2 N 6 14.43 1.20 115.70 130.13 A A A C5' C4' C3' DG DG DG 4 4 4 N 6 8.47 1.40 114.30 122.77 A A A N9 C1' C2' DG DG DG 4 4 4 N 6 -7.72 0.70 108.00 100.28 A A A O4' C1' N9 DG DG DG 4 4 4 N 6 -3.41 0.40 106.40 102.99 A A A C8 N9 C4 DG DG DG 4 4 4 N 6 4.46 0.70 119.90 124.36 A A A N3 C2 N2 DG DG DG 4 4 4 N 6 8.75 1.30 127.00 135.75 A A A C8 N9 C1' DG DG DG 4 4 4 N 6 11.44 1.20 119.70 131.14 A A A C3' O3' P DG DG DC 4 4 5 Y 6 -3.46 0.40 104.50 101.04 A A A O4' C4' C3' DC DC DC 5 5 5 N 6 -6.54 1.00 110.10 103.56 A A A C1' O4' C4' DC DC DC 5 5 5 N 6 -6.55 0.80 105.90 99.35 A A A O4' C1' C2' DT DT DT 6 6 6 N 6 4.38 0.30 108.30 112.68 A A A O4' C1' N9 DA DA DA 7 7 7 N 6 9.18 1.20 115.70 124.88 A A A C5' C4' C3' DC DC DC 8 8 8 N 6 -5.43 0.80 102.40 96.97 A A A C3' C2' C1' DC DC DC 9 9 9 N 6 -7.70 0.80 105.90 98.20 A A A O4' C1' C2' DA DA DA 10 10 10 N 6 -5.13 0.80 105.90 100.77 A A A O4' C1' C2' DT DT DT 11 11 11 N 6 3.25 0.30 108.30 111.55 A A A O4' C1' N1 DT DT DT 11 11 11 N 6 -6.28 0.60 122.90 116.62 A A A C6 C5 C7 DT DT DT 11 11 11 N 6 7.35 1.20 119.70 127.05 B B B C3' O3' P DG DG DG 14 14 15 Y 6 -4.50 0.70 102.20 97.70 B B B C4' C3' C2' DG DG DG 15 15 15 N 6 1.96 0.30 108.30 110.26 B B B O4' C1' N9 DA DA DA 16 16 16 N 6 -5.74 0.80 105.90 100.16 B B B O4' C1' C2' DT DT DT 17 17 17 N 6 -5.19 0.60 122.90 117.71 B B B C6 C5 C7 DT DT DT 17 17 17 N 6 -5.20 0.80 102.40 97.20 B B B C3' C2' C1' DG DG DG 18 18 18 N 6 -6.23 0.80 105.90 99.67 B B B O4' C1' C2' DG DG DG 18 18 18 N 6 -5.93 0.70 108.00 102.07 B B B O4' C1' N9 DG DG DG 18 18 18 N 6 -5.18 0.80 105.90 100.72 B B B O4' C1' C2' DG DG DG 19 19 19 N 6 1.94 0.30 108.30 110.24 B B B O4' C1' N9 DG DG DG 19 19 19 N 6 -4.43 0.70 102.20 97.77 B B B C4' C3' C2' DT DT DT 20 20 20 N 6 -4.22 0.70 102.20 97.98 B B B C4' C3' C2' DA DA DA 21 21 21 N 6 2.28 0.30 108.30 110.58 B B B O4' C1' N1 DC DC DC 23 23 23 N 1 A A C5' C4' DG DG 4 4 0.046 0.007 1.512 1.558 N 1 A A C8 N9 DG DG 4 4 0.067 0.007 1.374 1.441 N 1 B B C5 C7 DT DT 20 20 0.038 0.006 1.496 1.534 N 2 A A C2' C1' DG DG 4 4 0.073 0.010 1.519 1.592 N 2 A A C8 N9 DG DG 4 4 0.064 0.007 1.374 1.438 N 2 A A C5 C7 DT DT 6 6 0.045 0.006 1.496 1.541 N 2 A A C5' C4' DC DC 8 8 0.046 0.007 1.512 1.558 N 2 A A N1 C6 DC DC 13 13 -0.037 0.006 1.367 1.330 N 2 B B C5 C7 DT DT 20 20 0.046 0.006 1.496 1.542 N 3 A A P O5' DG DG 4 4 0.067 0.010 1.593 1.660 N 3 A A C5' C4' DG DG 4 4 0.058 0.007 1.512 1.570 N 3 A A C8 N9 DG DG 4 4 0.075 0.007 1.374 1.449 N 3 A A C5 C7 DT DT 6 6 0.038 0.006 1.496 1.534 N 3 A A C5' C4' DC DC 8 8 0.057 0.007 1.512 1.569 N 3 B B C5 C7 DT DT 17 17 0.040 0.006 1.496 1.536 N 3 B B C5 C7 DT DT 20 20 0.048 0.006 1.496 1.544 N 4 A A C5' C4' DG DG 4 4 0.048 0.007 1.512 1.560 N 4 A A C8 N9 DG DG 4 4 0.067 0.007 1.374 1.441 N 4 A A C5 C7 DT DT 6 6 0.038 0.006 1.496 1.534 N 4 B B C5 C7 DT DT 17 17 0.052 0.006 1.496 1.548 N 4 B B C5 C7 DT DT 20 20 0.036 0.006 1.496 1.532 N 5 A A C5' C4' DG DG 4 4 0.060 0.007 1.512 1.572 N 5 A A C8 N9 DG DG 4 4 0.063 0.007 1.374 1.437 N 5 A A C5 C7 DT DT 6 6 0.054 0.006 1.496 1.550 N 5 A A C5' C4' DC DC 8 8 0.045 0.007 1.512 1.557 N 5 B B C5 C7 DT DT 17 17 0.062 0.006 1.496 1.558 N 5 B B C5 C7 DT DT 20 20 0.037 0.006 1.496 1.533 N 6 A A P O5' DG DG 4 4 0.068 0.010 1.593 1.661 N 6 A A C5' C4' DG DG 4 4 0.060 0.007 1.512 1.572 N 6 A A C2' C1' DG DG 4 4 0.064 0.010 1.519 1.583 N 6 A A C8 N9 DG DG 4 4 0.079 0.007 1.374 1.453 N 6 A A C5 C7 DT DT 6 6 0.043 0.006 1.496 1.539 N 6 A A C5' C4' DC DC 8 8 0.050 0.007 1.512 1.562 N 6 B B C5 C7 DT DT 17 17 0.043 0.006 1.496 1.539 N model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 STRUCTURAL ALIGNMENT OF THE (+)-TRANS-ANTI-[BP]DG ADDUCT POSITIONED OPPOSITE DC AT A DNA TEMPLATE-PRIMER JUNCTION, NMR, 6 STRUCTURES 1 N N 2 N N 3 N N covale 1.501 none A DG 4 A N2 DG 4 1_555 A BAP 14 C C4' BAP 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 23 B N3 DC 10 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 23 B O2 DC 10 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 23 B N4 DC 10 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 22 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 22 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 22 B N2 DG 9 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 6 1_555 B DA 21 B N1 DA 8 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 6 1_555 B DA 21 B N6 DA 8 1_555 hydrog DT-DG MISPAIR A DT 6 A O2 DT 6 1_555 B DG 22 B N1 DG 9 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 20 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 20 B O4 DT 7 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 19 B N1 DG 6 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 19 B O6 DG 6 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 19 B N2 DG 6 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B DG 18 B N1 DG 5 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B DG 18 B O6 DG 5 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B DG 18 B N2 DG 5 1_555 hydrog WATSON-CRICK A DA 10 A N1 DA 10 1_555 B DT 17 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 10 A N6 DA 10 1_555 B DT 17 B O4 DT 4 1_555 hydrog WATSON-CRICK A DT 11 A N3 DT 11 1_555 B DA 16 B N1 DA 3 1_555 hydrog WATSON-CRICK A DT 11 A O4 DT 11 1_555 B DA 16 B N6 DA 3 1_555 hydrog WATSON-CRICK A DC 12 A N3 DC 12 1_555 B DG 15 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 12 A N4 DC 12 1_555 B DG 15 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 12 A O2 DC 12 1_555 B DG 15 B N2 DG 2 1_555 hydrog WATSON-CRICK A DC 13 A N3 DC 13 1_555 B DG 14 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 13 A N4 DC 13 1_555 B DG 14 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 13 A O2 DC 13 1_555 B DG 14 B N2 DG 1 1_555 DNA DEOXYRIBONUCLEIC ACID, DNA, BENZO[A]PYRENE, CARCINOGEN 1AXO PDB 1 1AXO 1AXO PDB 2 1AXO 1 13 1AXO 1 13 1AXO A 1 1 13 14 23 1AXO 14 23 1AXO B 2 1 10 BINDING SITE FOR RESIDUE BAP A 14 A BAP 14 Software 6 A DC 3 A DC 3 6 1_555 A DG 4 A DG 4 6 1_555 A DC 5 A DC 5 6 1_555 A DT 6 A DT 6 6 1_555 B DG 22 B DG 9 6 1_555 B DC 23 B DC 10 6 1_555 1 P 1