1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Gu, Z. Gorin, A.A. Krishnasami, R. Hingerty, B.E. Basu, A.K. Broyde, S. Patel, D.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C16 H11 N 217.265 N-1-AMINOPYRENE non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking US Biochemistry BICHAW 0033 0006-2960 38 10843 10854 10.1021/bi9912138 10451381 Solution structure of the N-(deoxyguanosin-8-yl)-1-aminopyrene ([AP]dG) adduct opposite dA in a DNA duplex. 1999 10.2210/pdb1axu/pdb pdb_00001axu 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 N1 ATOM OF AP LINKED TO C8 ATOM OF DG6 3254.138 DNA DUPLEX D(CCATC-[AP]G-CTACC)D(GGTAGAGATGG) 1 syn polymer N1 ATOM OF AP LINKED TO C8 ATOM OF DG6 3478.283 DNA DUPLEX D(CCATC-[AP]G-CTACC)D(GGTAGAGATGG) 1 syn polymer 217.265 N-1-AMINOPYRENE 1 syn non-polymer no no (DC)(DC)(DA)(DT)(DC)(DG)(DC)(DT)(DA)(DC)(DC) CCATCGCTACC A polydeoxyribonucleotide no no (DG)(DG)(DT)(DA)(DG)(DA)(DG)(DA)(DT)(DG)(DG) GGTAGAGATGG B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n -6.265 1 19 A 1 B 22 -2.157 A_DC1:DG22_B 1 1.689 0.815 0.575 -0.464 9.562 1 19 A 2 B 21 2.015 A_DC2:DG21_B 2 0.832 1.050 -0.098 -0.378 -12.041 1 20 A 3 B 20 2.878 A_DA3:DT20_B 3 -12.482 0.397 -0.525 -0.111 3.353 1 20 A 4 B 19 2.565 A_DT4:DA19_B 4 -20.272 0.192 -0.762 -0.236 -29.350 1 19 A 5 B 18 3.134 A_DC5:DG18_B 5 -2.758 0.865 0.081 -0.217 -33.970 1 19 A 7 B 16 -0.259 A_DC7:DG16_B 6 -8.341 1.006 0.677 -0.389 -2.704 1 20 A 8 B 15 11.115 A_DT8:DA15_B 7 -3.647 -0.468 0.604 -0.109 17.635 1 20 A 9 B 14 6.904 A_DA9:DT14_B 8 -2.016 0.158 0.111 -0.068 17.458 1 19 A 10 B 13 -0.405 A_DC10:DG13_B 9 -15.915 0.900 -0.424 -0.359 -1.514 1 19 A 11 B 12 0.100 A_DC11:DG12_B 10 14.229 0.954 -0.086 -0.417 2.838 44.158 A A 1 2 -9.872 B B 22 21 2.837 -7.386 0.766 -0.004 AA_DC1DC2:DG21DG22_BB 1 2.524 -3.373 43.496 0.600 -0.813 2.583 41.621 A A 2 3 27.484 B B 21 20 3.513 18.715 -0.500 -0.884 AA_DC2DA3:DT20DG21_BB 2 9.209 -13.524 36.219 -3.233 1.681 2.614 36.691 A A 3 4 7.869 B B 20 19 2.588 4.937 0.059 0.370 AA_DA3DT4:DA19DT20_BB 3 2.029 -3.234 36.314 0.048 0.128 5.341 36.953 A A 4 5 12.478 B B 19 18 5.942 7.740 0.738 -0.043 AA_DT4DC5:DG18DA19_BB 4 -10.958 17.665 34.512 -1.935 -3.808 6.613 50.834 A A 5 7 -2.104 B B 18 16 6.757 -1.800 -1.233 -2.623 AA_DC5DC7:DG16DG18_BB 5 7.331 -8.568 50.308 -2.796 2.491 2.567 31.025 A A 7 8 -2.723 B B 16 15 2.506 -1.456 2.094 -0.084 AA_DC7DT8:DA15DG16_BB 6 0.921 -1.723 30.979 0.060 -3.777 2.317 26.975 A A 8 9 6.513 B B 15 14 2.517 3.028 -0.954 -0.878 AA_DT8DA9:DT14DA15_BB 7 2.292 -4.930 26.711 -2.457 2.480 3.409 40.110 A A 9 10 -6.874 B B 14 13 3.447 -4.699 -0.152 -0.069 AA_DA9DC10:DG13DT14_BB 8 3.453 -5.051 39.701 0.464 0.637 3.387 37.927 A A 10 11 16.740 B B 13 12 3.964 10.741 0.399 -1.580 AA_DC10DC11:DG12DG13_BB 9 0.650 -1.012 36.422 -4.009 -0.519 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1998-07-01 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1997-10-21 REL REL AP N-1-AMINOPYRENE THE BEST TOTAL ENERGY 24 9 NOESY COSY TOCSY DQF-COSY 7.0 322 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. RELAXATION MATRIX REFINEMENT BRUNGER refinement X-PLOR 3.1 structure solution VNMR structure solution DUPLEX structure solution X-PLOR 500 Varian VARIAN UNITY PLUS 600 Varian VARIAN UNITY PLUS AP 23 3 AP AP 23 A C 1 n 1 DC 1 A C 2 n 2 DC 2 A A 3 n 3 DA 3 A T 4 n 4 DT 4 A C 5 n 5 DC 5 A G 6 n 6 DG 6 A C 7 n 7 DC 7 A T 8 n 8 DT 8 A A 9 n 9 DA 9 A C 10 n 10 DC 10 A C 11 n 11 DC 11 A G 12 n 1 DG 12 B G 13 n 2 DG 13 B T 14 n 3 DT 14 B A 15 n 4 DA 15 B G 16 n 5 DG 16 B A 17 n 6 DA 17 B G 18 n 7 DG 18 B A 19 n 8 DA 19 B T 20 n 9 DT 20 B G 21 n 10 DG 21 B G 22 n 11 DG 22 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -7.15 0.80 105.90 98.75 A A A O4' C1' C2' DC DC DC 1 1 1 N 1 -5.07 0.80 102.40 97.33 A A A C3' C2' C1' DC DC DC 2 2 2 N 1 -6.93 0.80 105.90 98.97 A A A O4' C1' C2' DT DT DT 4 4 4 N 1 -4.92 0.80 102.40 97.48 A A A C3' C2' C1' DC DC DC 5 5 5 N 1 -5.34 0.80 105.90 100.56 A A A O4' C1' C2' DC DC DC 5 5 5 N 1 7.38 1.10 109.80 117.18 A A A C5' C4' O4' DG DG DG 6 6 6 N 1 -6.29 0.80 105.90 99.61 A A A O4' C1' C2' DG DG DG 6 6 6 N 1 3.83 0.30 108.30 112.13 A A A O4' C1' N9 DG DG DG 6 6 6 N 1 -4.26 0.70 108.00 103.74 A A A O4' C1' N1 DC DC DC 7 7 7 N 1 -6.86 1.00 110.10 103.24 A A A C1' O4' C4' DT DT DT 8 8 8 N 1 -8.60 0.70 108.00 99.40 A A A O4' C1' N9 DA DA DA 9 9 9 N 1 5.57 0.30 108.30 113.87 A A A O4' C1' N1 DC DC DC 10 10 10 N 1 -5.91 0.70 102.20 96.29 B B B C4' C3' C2' DG DG DG 12 12 12 N 1 -5.41 0.80 102.40 96.99 B B B C3' C2' C1' DG DG DG 12 12 12 N 1 4.26 0.30 108.30 112.56 B B B O4' C1' N9 DG DG DG 13 13 13 N 1 -6.95 1.00 110.10 103.15 B B B C1' O4' C4' DA DA DA 15 15 15 N 1 5.00 0.30 108.30 113.30 B B B O4' C1' N9 DA DA DA 15 15 15 N 1 13.39 2.00 112.30 125.69 B B B C4' C3' O3' DG DG DG 16 16 16 N 1 -6.57 0.70 108.00 101.43 B B B O4' C1' N9 DA DA DA 17 17 17 N 1 3.25 0.30 108.30 111.55 B B B O4' C1' N9 DG DG DG 18 18 18 N 1 8.87 1.20 119.70 128.57 B B B C3' O3' P DG DG DA 18 18 19 Y 1 -4.81 0.60 122.90 118.09 B B B C6 C5 C7 DT DT DT 20 20 20 N 1 10.20 1.20 119.70 129.90 B B B C3' O3' P DG DG DG 21 21 22 Y 1 -6.34 0.70 108.00 101.66 B B B O4' C1' N9 DG DG DG 22 22 22 N 2 -4.55 0.70 102.20 97.65 A A A C4' C3' C2' DC DC DC 1 1 1 N 2 -6.58 0.70 108.00 101.42 A A A O4' C1' N1 DC DC DC 1 1 1 N 2 4.20 0.60 118.90 123.10 A A A N1 C2 O2 DC DC DC 1 1 1 N 2 2.91 0.30 108.30 111.21 A A A O4' C1' N1 DC DC DC 2 2 2 N 2 -5.20 0.80 105.90 100.70 A A A O4' C1' C2' DC DC DC 5 5 5 N 2 3.21 0.30 108.30 111.51 A A A O4' C1' N1 DC DC DC 5 5 5 N 2 -5.48 0.80 105.90 100.42 A A A O4' C1' C2' DC DC DC 7 7 7 N 2 -6.13 0.70 108.00 101.87 A A A O4' C1' N1 DC DC DC 7 7 7 N 2 -6.47 0.80 105.90 99.43 A A A O4' C1' C2' DT DT DT 8 8 8 N 2 3.54 0.30 108.30 111.84 A A A O4' C1' N1 DC DC DC 10 10 10 N 2 3.75 0.60 118.90 122.65 A A A N1 C2 O2 DC DC DC 10 10 10 N 2 -6.32 0.70 102.20 95.88 B B B C4' C3' C2' DG DG DG 12 12 12 N 2 2.52 0.30 108.30 110.82 B B B O4' C1' N9 DG DG DG 12 12 12 N 2 -9.59 1.00 110.10 100.51 B B B C1' O4' C4' DA DA DA 15 15 15 N 2 3.72 0.30 108.30 112.02 B B B O4' C1' N9 DA DA DA 15 15 15 N 2 -6.36 0.40 104.50 98.14 B B B O4' C4' C3' DG DG DG 16 16 16 N 2 -8.11 1.00 110.10 101.99 B B B C1' O4' C4' DG DG DG 16 16 16 N 2 7.76 1.20 115.70 123.46 B B B C5' C4' C3' DA DA DA 17 17 17 N 2 -5.70 0.70 102.20 96.50 B B B C4' C3' C2' DG DG DG 18 18 18 N 2 3.67 0.30 108.30 111.97 B B B O4' C1' N9 DG DG DG 18 18 18 N 2 -4.32 0.70 108.00 103.68 B B B O4' C1' N1 DT DT DT 20 20 20 N 2 3.74 0.60 119.00 122.74 B B B C4 C5 C7 DT DT DT 20 20 20 N 2 -6.03 0.60 122.90 116.87 B B B C6 C5 C7 DT DT DT 20 20 20 N 2 -5.93 0.70 108.00 102.07 B B B O4' C1' N9 DG DG DG 21 21 21 N 2 -5.52 0.70 108.00 102.48 B B B O4' C1' N9 DG DG DG 22 22 22 N 3 -4.55 0.70 102.20 97.65 A A A C4' C3' C2' DC DC DC 1 1 1 N 3 -5.22 0.80 102.40 97.18 A A A C3' C2' C1' DC DC DC 1 1 1 N 3 -5.84 0.70 108.00 102.16 A A A O4' C1' N1 DC DC DC 1 1 1 N 3 10.84 1.20 115.70 126.54 A A A C5' C4' C3' DT DT DT 4 4 4 N 3 1.80 0.30 108.30 110.10 A A A O4' C1' N1 DT DT DT 4 4 4 N 3 7.76 1.20 119.70 127.46 A A A C3' O3' P DT DT DC 4 4 5 Y 3 3.80 0.30 108.30 112.10 A A A O4' C1' N9 DG DG DG 6 6 6 N 3 -6.22 0.80 105.90 99.68 A A A O4' C1' C2' DC DC DC 7 7 7 N 3 -6.39 0.80 105.90 99.51 A A A O4' C1' C2' DT DT DT 8 8 8 N 3 -5.12 0.80 102.40 97.28 A A A C3' C2' C1' DC DC DC 10 10 10 N 3 2.44 0.30 108.30 110.74 A A A O4' C1' N1 DC DC DC 10 10 10 N 3 -5.64 0.70 102.20 96.56 B B B C4' C3' C2' DG DG DG 12 12 12 N 3 -5.31 0.80 102.40 97.09 B B B C3' C2' C1' DG DG DG 12 12 12 N 3 4.71 0.30 108.30 113.01 B B B O4' C1' N9 DG DG DG 12 12 12 N 3 4.63 0.30 108.30 112.93 B B B O4' C1' N9 DG DG DG 13 13 13 N 3 -7.94 1.00 110.10 102.16 B B B C1' O4' C4' DA DA DA 15 15 15 N 3 6.77 0.30 108.30 115.07 B B B O4' C1' N9 DA DA DA 15 15 15 N 3 11.19 1.60 120.90 132.09 B B B P O5' C5' DG DG DG 16 16 16 N 3 -5.55 0.40 104.50 98.95 B B B O4' C4' C3' DG DG DG 16 16 16 N 3 -7.72 1.00 110.10 102.38 B B B C1' O4' C4' DG DG DG 16 16 16 N 3 1.82 0.30 108.30 110.12 B B B O4' C1' N9 DG DG DG 16 16 16 N 3 8.33 1.20 119.70 128.03 B B B C3' O3' P DG DG DA 16 16 17 Y 3 7.68 1.20 119.70 127.38 B B B C3' O3' P DA DA DG 17 17 18 Y 3 3.43 0.30 108.30 111.73 B B B O4' C1' N9 DG DG DG 18 18 18 N 3 -5.31 0.80 105.90 100.59 B B B O4' C1' C2' DA DA DA 19 19 19 N 3 -4.40 0.70 102.20 97.80 B B B C4' C3' C2' DT DT DT 20 20 20 N 3 -4.39 0.60 122.90 118.51 B B B C6 C5 C7 DT DT DT 20 20 20 N 3 -5.34 0.80 105.90 100.56 B B B O4' C1' C2' DG DG DG 21 21 21 N 3 7.82 1.20 119.70 127.52 B B B C3' O3' P DG DG DG 21 21 22 Y 3 -4.87 0.80 102.40 97.53 B B B C3' C2' C1' DG DG DG 22 22 22 N 4 -4.73 0.70 102.20 97.47 A A A C4' C3' C2' DC DC DC 1 1 1 N 4 -5.96 0.80 102.40 96.44 A A A C3' C2' C1' DC DC DC 1 1 1 N 4 -4.47 0.70 102.20 97.73 A A A C4' C3' C2' DC DC DC 2 2 2 N 4 -6.72 0.80 105.90 99.18 A A A O4' C1' C2' DT DT DT 4 4 4 N 4 3.91 0.60 119.00 122.91 A A A C4 C5 C7 DT DT DT 4 4 4 N 4 -5.54 0.60 122.90 117.36 A A A C6 C5 C7 DT DT DT 4 4 4 N 4 6.74 1.10 109.80 116.54 A A A C5' C4' O4' DC DC DC 5 5 5 N 4 -6.55 0.80 105.90 99.35 A A A O4' C1' C2' DC DC DC 5 5 5 N 4 -9.38 0.80 105.90 96.52 A A A O4' C1' C2' DT DT DT 8 8 8 N 4 -5.61 0.70 108.00 102.39 A A A O4' C1' N9 DA DA DA 9 9 9 N 4 3.41 0.30 108.30 111.71 A A A O4' C1' N1 DC DC DC 10 10 10 N 4 4.27 0.60 118.90 123.17 A A A N1 C2 O2 DC DC DC 10 10 10 N 4 2.52 0.40 120.30 122.82 A A A C6 N1 C2 DC DC DC 11 11 11 N 4 -4.31 0.70 102.20 97.89 B B B C4' C3' C2' DG DG DG 12 12 12 N 4 -5.33 0.80 102.40 97.07 B B B C3' C2' C1' DG DG DG 12 12 12 N 4 2.34 0.30 108.30 110.64 B B B O4' C1' N9 DG DG DG 13 13 13 N 4 -7.45 1.00 110.10 102.65 B B B C1' O4' C4' DA DA DA 15 15 15 N 4 8.03 1.20 119.70 127.73 B B B C3' O3' P DA DA DG 15 15 16 Y 4 -6.92 1.00 110.10 103.18 B B B C1' O4' C4' DG DG DG 16 16 16 N 4 -7.13 0.80 102.40 95.27 B B B C3' C2' C1' DA DA DA 17 17 17 N 4 7.70 1.20 119.70 127.40 B B B C3' O3' P DA DA DG 17 17 18 Y 4 7.70 1.20 115.70 123.40 B B B C5' C4' C3' DG DG DG 18 18 18 N 4 -4.84 0.70 102.20 97.36 B B B C4' C3' C2' DG DG DG 18 18 18 N 4 1.87 0.30 108.30 110.17 B B B O4' C1' N9 DG DG DG 18 18 18 N 4 4.43 0.30 108.30 112.73 B B B O4' C1' N9 DA DA DA 19 19 19 N 4 -3.77 0.60 122.90 119.13 B B B C6 C5 C7 DT DT DT 20 20 20 N 4 -4.86 0.80 102.40 97.54 B B B C3' C2' C1' DG DG DG 21 21 21 N 5 -6.06 0.80 105.90 99.84 A A A O4' C1' C2' DC DC DC 1 1 1 N 5 8.72 1.20 119.70 128.42 A A A C3' O3' P DC DC DC 1 1 2 Y 5 -5.85 0.70 108.00 102.15 A A A O4' C1' N9 DA DA DA 3 3 3 N 5 10.47 1.20 115.70 126.17 A A A C5' C4' C3' DT DT DT 4 4 4 N 5 -4.92 0.80 102.40 97.48 A A A C3' C2' C1' DT DT DT 4 4 4 N 5 7.23 1.20 119.70 126.93 A A A C3' O3' P DT DT DC 4 4 5 Y 5 -7.04 1.00 110.10 103.06 A A A C1' O4' C4' DC DC DC 5 5 5 N 5 -8.30 0.80 105.90 97.60 A A A O4' C1' C2' DC DC DC 5 5 5 N 5 4.23 0.60 118.90 123.13 A A A N1 C2 O2 DC DC DC 5 5 5 N 5 -5.29 0.80 105.90 100.61 A A A O4' C1' C2' DG DG DG 6 6 6 N 5 7.59 0.30 108.30 115.89 A A A O4' C1' N9 DG DG DG 6 6 6 N 5 3.65 0.60 118.90 122.55 A A A N1 C2 O2 DC DC DC 7 7 7 N 5 -7.74 0.80 105.90 98.16 A A A O4' C1' C2' DT DT DT 8 8 8 N 5 -4.82 0.80 102.40 97.58 A A A C3' C2' C1' DA DA DA 9 9 9 N 5 -4.56 0.70 108.00 103.44 A A A O4' C1' N9 DA DA DA 9 9 9 N 5 2.26 0.30 108.30 110.56 A A A O4' C1' N1 DC DC DC 10 10 10 N 5 3.72 0.60 118.90 122.62 A A A N1 C2 O2 DC DC DC 11 11 11 N 5 -5.79 0.70 102.20 96.41 B B B C4' C3' C2' DG DG DG 12 12 12 N 5 4.45 0.30 108.30 112.75 B B B O4' C1' N9 DG DG DG 12 12 12 N 5 -5.28 0.80 105.90 100.62 B B B O4' C1' C2' DT DT DT 14 14 14 N 5 4.51 0.70 124.90 129.41 B B B C5 C4 O4 DT DT DT 14 14 14 N 5 4.92 0.60 119.00 123.92 B B B C4 C5 C7 DT DT DT 14 14 14 N 5 -7.02 0.60 122.90 115.88 B B B C6 C5 C7 DT DT DT 14 14 14 N 5 -6.89 1.00 110.10 103.21 B B B C1' O4' C4' DA DA DA 15 15 15 N 5 -6.15 1.00 110.10 103.95 B B B C1' O4' C4' DG DG DG 16 16 16 N 5 -6.01 0.80 105.90 99.89 B B B O4' C1' C2' DG DG DG 16 16 16 N 5 -5.70 0.80 102.40 96.70 B B B C3' C2' C1' DA DA DA 17 17 17 N 5 -4.93 0.70 108.00 103.07 B B B O4' C1' N9 DA DA DA 17 17 17 N 5 -4.71 0.40 104.50 99.79 B B B O4' C4' C3' DG DG DG 18 18 18 N 5 -4.85 0.80 102.40 97.55 B B B C3' C2' C1' DG DG DG 18 18 18 N 5 3.27 0.30 108.30 111.57 B B B O4' C1' N9 DG DG DG 18 18 18 N 5 12.49 1.60 120.90 133.39 B B B P O5' C5' DA DA DA 19 19 19 N 5 7.22 1.20 119.70 126.92 B B B C3' O3' P DA DA DT 19 19 20 Y 5 4.31 0.30 108.30 112.61 B B B O4' C1' N9 DG DG DG 21 21 21 N 6 -4.40 0.70 102.20 97.80 A A A C4' C3' C2' DC DC DC 1 1 1 N 6 -5.32 0.70 108.00 102.68 A A A O4' C1' N1 DC DC DC 1 1 1 N 6 2.57 0.30 108.30 110.87 A A A O4' C1' N1 DC DC DC 2 2 2 N 6 -4.25 0.70 108.00 103.75 A A A O4' C1' N9 DA DA DA 3 3 3 N 6 10.96 1.20 115.70 126.66 A A A C5' C4' C3' DT DT DT 4 4 4 N 6 -7.23 1.00 110.10 102.87 A A A C1' O4' C4' DC DC DC 5 5 5 N 6 -8.84 0.80 105.90 97.06 A A A O4' C1' C2' DC DC DC 5 5 5 N 6 5.27 0.30 108.30 113.57 A A A O4' C1' N1 DC DC DC 5 5 5 N 6 -5.78 0.80 105.90 100.12 A A A O4' C1' C2' DC DC DC 7 7 7 N 6 -7.74 0.80 105.90 98.16 A A A O4' C1' C2' DT DT DT 8 8 8 N 6 3.43 0.30 108.30 111.73 A A A O4' C1' N1 DC DC DC 10 10 10 N 6 -6.10 0.70 102.20 96.10 B B B C4' C3' C2' DG DG DG 12 12 12 N 6 3.43 0.30 108.30 111.73 B B B O4' C1' N9 DG DG DG 12 12 12 N 6 4.13 0.30 108.30 112.43 B B B O4' C1' N9 DG DG DG 13 13 13 N 6 2.24 0.30 108.30 110.54 B B B O4' C1' N1 DT DT DT 14 14 14 N 6 -6.68 1.00 110.10 103.42 B B B C1' O4' C4' DA DA DA 15 15 15 N 6 -6.84 0.80 105.90 99.06 B B B O4' C1' C2' DG DG DG 16 16 16 N 6 -6.49 0.80 102.40 95.91 B B B C3' C2' C1' DA DA DA 17 17 17 N 6 4.28 0.30 108.30 112.58 B B B O4' C1' N9 DG DG DG 18 18 18 N 6 -4.94 0.60 122.90 117.96 B B B C6 C5 C7 DT DT DT 20 20 20 N 7 -5.41 0.80 105.90 100.49 A A A O4' C1' C2' DC DC DC 1 1 1 N 7 2.63 0.30 108.30 110.93 A A A O4' C1' N1 DC DC DC 1 1 1 N 7 -4.99 0.70 102.20 97.21 A A A C4' C3' C2' DC DC DC 2 2 2 N 7 3.97 0.60 118.90 122.87 A A A N1 C2 O2 DC DC DC 2 2 2 N 7 10.84 1.20 119.70 130.54 A A A C3' O3' P DC DC DA 2 2 3 Y 7 -6.27 0.80 102.40 96.13 A A A C3' C2' C1' DT DT DT 4 4 4 N 7 -5.29 0.80 105.90 100.61 A A A O4' C1' C2' DC DC DC 5 5 5 N 7 -7.74 0.80 105.90 98.16 A A A O4' C1' C2' DG DG DG 6 6 6 N 7 4.02 0.30 108.30 112.32 A A A O4' C1' N9 DG DG DG 6 6 6 N 7 3.91 0.60 118.90 122.81 A A A N1 C2 O2 DC DC DC 7 7 7 N 7 -6.06 1.00 110.10 104.04 A A A C1' O4' C4' DT DT DT 8 8 8 N 7 -7.69 0.80 105.90 98.21 A A A O4' C1' C2' DT DT DT 8 8 8 N 7 2.32 0.30 108.30 110.62 A A A O4' C1' N1 DT DT DT 8 8 8 N 7 -4.29 0.70 108.00 103.71 A A A O4' C1' N9 DA DA DA 9 9 9 N 7 3.11 0.30 108.30 111.41 A A A O4' C1' N1 DC DC DC 10 10 10 N 7 3.77 0.60 118.90 122.67 A A A N1 C2 O2 DC DC DC 10 10 10 N 7 -5.35 0.80 105.90 100.55 B B B O4' C1' C2' DG DG DG 12 12 12 N 7 6.53 0.30 108.30 114.83 B B B O4' C1' N9 DG DG DG 12 12 12 N 7 -4.17 0.60 122.90 118.73 B B B C6 C5 C7 DT DT DT 14 14 14 N 7 -5.59 0.70 108.00 102.41 B B B O4' C1' N9 DA DA DA 15 15 15 N 7 -3.80 0.40 104.50 100.70 B B B O4' C4' C3' DG DG DG 16 16 16 N 7 -7.56 1.00 110.10 102.54 B B B C1' O4' C4' DG DG DG 16 16 16 N 7 -5.20 0.80 102.40 97.20 B B B C3' C2' C1' DA DA DA 17 17 17 N 7 -5.49 0.70 102.20 96.71 B B B C4' C3' C2' DG DG DG 18 18 18 N 7 1.92 0.30 108.30 110.22 B B B O4' C1' N9 DG DG DG 18 18 18 N 7 7.25 1.20 119.70 126.95 B B B C3' O3' P DG DG DA 18 18 19 Y 7 9.66 1.20 115.70 125.36 B B B C5' C4' C3' DT DT DT 20 20 20 N 7 -5.12 0.70 102.20 97.08 B B B C4' C3' C2' DT DT DT 20 20 20 N 7 -5.33 0.80 102.40 97.07 B B B C3' C2' C1' DT DT DT 20 20 20 N 7 -4.86 0.60 122.90 118.04 B B B C6 C5 C7 DT DT DT 20 20 20 N 7 9.64 1.20 119.70 129.34 B B B C3' O3' P DT DT DG 20 20 21 Y 7 10.07 1.20 119.70 129.77 B B B C3' O3' P DG DG DG 21 21 22 Y 8 -5.67 0.70 102.20 96.53 A A A C4' C3' C2' DC DC DC 1 1 1 N 8 -5.91 0.80 102.40 96.49 A A A C3' C2' C1' DC DC DC 1 1 1 N 8 -4.83 0.80 105.90 101.07 A A A O4' C1' C2' DC DC DC 2 2 2 N 8 -9.95 1.00 110.10 100.15 A A A C1' O4' C4' DC DC DC 5 5 5 N 8 -4.95 0.80 102.40 97.45 A A A C3' C2' C1' DC DC DC 5 5 5 N 8 -5.49 0.80 105.90 100.41 A A A O4' C1' C2' DG DG DG 6 6 6 N 8 5.16 0.30 108.30 113.46 A A A O4' C1' N9 DG DG DG 6 6 6 N 8 -6.86 0.80 105.90 99.04 A A A O4' C1' C2' DC DC DC 7 7 7 N 8 -7.54 0.80 105.90 98.36 A A A O4' C1' C2' DT DT DT 8 8 8 N 8 -4.45 0.70 108.00 103.55 A A A O4' C1' N9 DA DA DA 9 9 9 N 8 4.56 0.30 108.30 112.86 A A A O4' C1' N1 DC DC DC 10 10 10 N 8 -2.49 0.40 104.50 102.01 B B B O4' C4' C3' DG DG DG 12 12 12 N 8 -5.52 0.80 102.40 96.88 B B B C3' C2' C1' DG DG DG 12 12 12 N 8 -5.75 0.80 105.90 100.15 B B B O4' C1' C2' DG DG DG 13 13 13 N 8 -7.45 1.00 110.10 102.65 B B B C1' O4' C4' DA DA DA 15 15 15 N 8 8.42 1.20 119.70 128.12 B B B C3' O3' P DA DA DG 15 15 16 Y 8 -5.19 0.40 104.50 99.31 B B B O4' C4' C3' DG DG DG 16 16 16 N 8 3.55 0.30 108.30 111.85 B B B O4' C1' N9 DG DG DG 16 16 16 N 8 -5.02 0.80 102.40 97.38 B B B C3' C2' C1' DA DA DA 17 17 17 N 8 7.65 1.20 119.70 127.35 B B B C3' O3' P DA DA DT 19 19 20 Y 8 -4.49 0.70 102.20 97.71 B B B C4' C3' C2' DT DT DT 20 20 20 N 8 -4.06 0.60 122.30 118.24 B B B N3 C2 O2 DT DT DT 20 20 20 N 8 -5.66 0.80 102.40 96.74 B B B C3' C2' C1' DG DG DG 21 21 21 N 8 -5.52 0.80 102.40 96.88 B B B C3' C2' C1' DG DG DG 22 22 22 N 8 -4.14 0.60 119.90 115.76 B B B N1 C6 O6 DG DG DG 22 22 22 N 8 4.14 0.60 128.60 132.74 B B B C5 C6 O6 DG DG DG 22 22 22 N 9 -4.63 0.70 108.00 103.37 A A A O4' C1' N1 DC DC DC 1 1 1 N 9 10.12 1.20 119.70 129.82 A A A C3' O3' P DC DC DC 1 1 2 Y 9 3.28 0.30 108.30 111.58 A A A O4' C1' N1 DC DC DC 2 2 2 N 9 -5.81 0.70 108.00 102.19 A A A O4' C1' N9 DA DA DA 3 3 3 N 9 -5.02 0.80 105.90 100.88 A A A O4' C1' C2' DC DC DC 5 5 5 N 9 3.00 0.30 108.30 111.30 A A A O4' C1' N1 DC DC DC 5 5 5 N 9 10.77 1.60 120.90 131.67 A A A P O5' C5' DC DC DC 7 7 7 N 9 -8.65 0.70 108.00 99.35 A A A O4' C1' N1 DC DC DC 7 7 7 N 9 -4.85 0.80 105.90 101.05 A A A O4' C1' C2' DT DT DT 8 8 8 N 9 -6.13 0.70 108.00 101.87 A A A O4' C1' N1 DT DT DT 8 8 8 N 9 4.37 0.70 124.90 129.27 A A A C5 C4 O4 DT DT DT 8 8 8 N 9 -5.79 0.70 108.00 102.21 A A A O4' C1' N9 DA DA DA 9 9 9 N 9 -5.53 0.80 102.40 96.87 A A A C3' C2' C1' DC DC DC 10 10 10 N 9 -5.57 0.70 102.20 96.63 B B B C4' C3' C2' DG DG DG 12 12 12 N 9 -7.08 0.80 102.40 95.32 B B B C3' C2' C1' DG DG DG 12 12 12 N 9 2.06 0.30 108.30 110.36 B B B O4' C1' N9 DA DA DA 15 15 15 N 9 -7.52 0.40 104.50 96.98 B B B O4' C4' C3' DG DG DG 16 16 16 N 9 -7.28 1.00 110.10 102.82 B B B C1' O4' C4' DG DG DG 16 16 16 N 9 7.25 1.20 119.70 126.95 B B B C3' O3' P DG DG DA 16 16 17 Y 9 -5.96 0.70 108.00 102.04 B B B O4' C1' N9 DA DA DA 17 17 17 N 9 2.13 0.30 108.30 110.43 B B B O4' C1' N9 DG DG DG 18 18 18 N 9 8.21 1.20 119.70 127.91 B B B C3' O3' P DG DG DA 18 18 19 Y 9 10.19 1.60 120.90 131.09 B B B P O5' C5' DA DA DA 19 19 19 N 9 -6.59 0.70 108.00 101.41 B B B O4' C1' N9 DA DA DA 19 19 19 N 9 -6.09 0.80 105.90 99.81 B B B O4' C1' C2' DG DG DG 21 21 21 N 1 A A C5 C7 DT DT 4 4 0.063 0.006 1.496 1.559 N 1 B B C5' C4' DG DG 12 12 0.042 0.007 1.512 1.554 N 1 B B C2' C1' DA DA 17 17 0.069 0.010 1.519 1.588 N 1 B B C5 C7 DT DT 20 20 0.041 0.006 1.496 1.537 N 2 A A C5 C7 DT DT 4 4 0.064 0.006 1.496 1.560 N 2 A A C5 C7 DT DT 8 8 0.062 0.006 1.496 1.558 N 2 B B C5 C7 DT DT 14 14 0.067 0.006 1.496 1.563 N 2 B B C5 C7 DT DT 20 20 0.053 0.006 1.496 1.549 N 3 A A C5' C4' DT DT 4 4 0.044 0.007 1.512 1.556 N 3 A A C5 C7 DT DT 4 4 0.049 0.006 1.496 1.545 N 3 A A C5 C7 DT DT 8 8 0.052 0.006 1.496 1.548 N 3 B B C5 C7 DT DT 14 14 0.042 0.006 1.496 1.538 N 4 A A C5 C7 DT DT 4 4 0.057 0.006 1.496 1.553 N 4 A A C5 C7 DT DT 8 8 0.052 0.006 1.496 1.548 N 4 A A C5' C4' DC DC 11 11 0.043 0.007 1.512 1.555 N 4 B B C5 C7 DT DT 20 20 0.060 0.006 1.496 1.556 N 5 A A C5 C7 DT DT 4 4 0.048 0.006 1.496 1.544 N 5 A A C5 C7 DT DT 8 8 0.050 0.006 1.496 1.546 N 5 B B C5' C4' DA DA 19 19 0.046 0.007 1.512 1.558 N 5 B B C5 C7 DT DT 20 20 0.052 0.006 1.496 1.548 N 6 A A C5' C4' DT DT 4 4 0.052 0.007 1.512 1.564 N 6 A A C5 C7 DT DT 4 4 0.053 0.006 1.496 1.549 N 6 A A C5 C7 DT DT 8 8 0.046 0.006 1.496 1.542 N 6 B B C5 C7 DT DT 20 20 0.042 0.006 1.496 1.538 N 7 A A C5' C4' DC DC 2 2 0.052 0.007 1.512 1.564 N 7 A A C5 C7 DT DT 4 4 0.055 0.006 1.496 1.551 N 7 B B C5' C4' DT DT 20 20 0.045 0.007 1.512 1.557 N 8 A A C5 C7 DT DT 4 4 0.056 0.006 1.496 1.552 N 8 A A C5 C7 DT DT 8 8 0.037 0.006 1.496 1.533 N 8 B B C5 C7 DT DT 20 20 0.051 0.006 1.496 1.547 N 9 A A C5 C7 DT DT 4 4 0.041 0.006 1.496 1.537 N 9 A A C5 C7 DT DT 8 8 0.037 0.006 1.496 1.533 N 9 B B C5 C7 DT DT 14 14 0.051 0.006 1.496 1.547 N 9 B B C5 C7 DT DT 20 20 0.072 0.006 1.496 1.568 N model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 SOLUTION NMR STRUCTURE OF THE [AP]DG ADDUCT OPPOSITE DA IN A DNA DUPLEX, NMR, 9 STRUCTURES 1 N N 2 N N 3 N N covale 1.481 none A DG 6 A C8 DG 6 1_555 A AP 23 C N1 AP 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 22 B N1 DG 11 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 22 B O6 DG 11 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 22 B N2 DG 11 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 B DG 21 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 B DG 21 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 B DG 21 B N2 DG 10 1_555 hydrog WATSON-CRICK A DA 3 A N1 DA 3 1_555 B DT 20 B N3 DT 9 1_555 hydrog WATSON-CRICK A DA 3 A N6 DA 3 1_555 B DT 20 B O4 DT 9 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 B DA 19 B N1 DA 8 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 B DA 19 B N6 DA 8 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 18 B N1 DG 7 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 18 B O6 DG 7 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 18 B N2 DG 7 1_555 hydrog DC-DA MISPAIR A DC 7 A N4 DC 7 1_555 B DA 15 B N1 DA 4 1_555 hydrog WATSON-CRICK A DC 7 A N3 DC 7 1_555 B DG 16 B N1 DG 5 1_555 hydrog WATSON-CRICK A DC 7 A N4 DC 7 1_555 B DG 16 B O6 DG 5 1_555 hydrog WATSON-CRICK A DC 7 A O2 DC 7 1_555 B DG 16 B N2 DG 5 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 B DA 15 B N1 DA 4 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 B DA 15 B N6 DA 4 1_555 hydrog WATSON-CRICK A DA 9 A N1 DA 9 1_555 B DT 14 B N3 DT 3 1_555 hydrog WATSON-CRICK A DA 9 A N6 DA 9 1_555 B DT 14 B O4 DT 3 1_555 hydrog WATSON-CRICK A DC 10 A N3 DC 10 1_555 B DG 13 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 10 A N4 DC 10 1_555 B DG 13 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 10 A O2 DC 10 1_555 B DG 13 B N2 DG 2 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 12 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 12 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 12 B N2 DG 1 1_555 DNA DNA DUPLEX, AMINOPYRENE ADDUCT, CARCINOGEN ADDUCT, DNA 1AXU PDB 1 1AXU 1AXU PDB 2 1AXU 1 11 1AXU 1 11 1AXU A 1 1 11 12 22 1AXU 12 22 1AXU B 2 1 11 BINDING SITE FOR RESIDUE AP A 23 A AP 23 Software 5 A DG 6 A DG 6 5 1_555 A DC 7 A DC 7 5 1_555 B DG 16 B DG 5 5 1_555 B DA 17 B DA 6 5 1_555 B DG 18 B DG 7 5 1_555 1 P 1