0.016077 0.000000 0.000000 0.000000 0.016077 0.000000 0.000000 0.000000 0.013387 0.00000 0.00000 0.00000 Lee, C.-H. Kuriyan, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 62.200 62.200 74.700 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C9 H12 N O6 P 261.168 n O-PHOSPHOTYROSINE PHOSPHONOTYROSINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 2 423 438 10.1016/S0969-2126(00)00044-7 7521735 Crystal structures of peptide complexes of the amino-terminal SH2 domain of the Syp tyrosine phosphatase. 1994 US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 72 779 Binding of a High Affinity Phosphotyrosyl Peptide to the Src Sh2 Domain: Crystal Structures of the Complexed and Peptide-Free Forms 1993 UK Curr.Opin.Struct.Biol. COSBEF 0801 0959-440X 3 828 Structures of Sh2 and SH3 Domains 1993 UK Nature NATUAS 0006 0028-0836 358 646 Crystal Structure of the Phosphotyrosine Recognition Domain Sh2 of V-Src Complexed with Tyrosine-Phosphorylated Peptides 1992 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 11528.979 PROTEIN-TYROSINE PHOSPHATASE SYP (N-TERMINAL SH2 DOMAIN) 3.1.3.48 1 man polymer 1228.226 PEPTIDE PDGFR-740 1 man polymer 18.015 water 63 nat water no no MRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYM EHHGQLKEKNGDVIELKYPLN MRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYM EHHGQLKEKNGDVIELKYPLN A polypeptide(L) no yes DGG(PTR)MDMSKGS DGGYMDMSKGS P polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus sample 10090 Mus musculus house mouse Mus sample 10090 Mus musculus 2.83 56.55 repository Initial release Version format compliance Version format compliance 1 0 1994-08-31 1 1 2008-03-24 1 2 2011-07-13 Y 1994-05-15 REL REL HOH water HOH 301 3 HOH HOH 301 A HOH 302 3 HOH HOH 302 A HOH 303 3 HOH HOH 303 A HOH 304 3 HOH HOH 304 A HOH 305 3 HOH HOH 305 A HOH 306 3 HOH HOH 306 A HOH 307 3 HOH HOH 307 A HOH 308 3 HOH HOH 308 A HOH 309 3 HOH HOH 309 A HOH 310 3 HOH HOH 310 A HOH 311 3 HOH HOH 311 A HOH 312 3 HOH HOH 312 A HOH 313 3 HOH HOH 313 A HOH 314 3 HOH HOH 314 A HOH 315 3 HOH HOH 315 A HOH 316 3 HOH HOH 316 A HOH 317 3 HOH HOH 317 A HOH 318 3 HOH HOH 318 A HOH 319 3 HOH HOH 319 A HOH 320 3 HOH HOH 320 A HOH 321 3 HOH HOH 321 A HOH 322 3 HOH HOH 322 A HOH 323 3 HOH HOH 323 A HOH 324 3 HOH HOH 324 A HOH 325 3 HOH HOH 325 A HOH 326 3 HOH HOH 326 A HOH 327 3 HOH HOH 327 A HOH 328 3 HOH HOH 328 A HOH 329 3 HOH HOH 329 A HOH 330 3 HOH HOH 330 A HOH 331 3 HOH HOH 331 A HOH 332 3 HOH HOH 332 A HOH 333 3 HOH HOH 333 A HOH 334 3 HOH HOH 334 A HOH 335 3 HOH HOH 335 A HOH 336 3 HOH HOH 336 A HOH 337 3 HOH HOH 337 A HOH 338 3 HOH HOH 338 A HOH 339 3 HOH HOH 339 A HOH 340 3 HOH HOH 340 A HOH 341 3 HOH HOH 341 A HOH 342 3 HOH HOH 342 A HOH 343 3 HOH HOH 343 A HOH 344 3 HOH HOH 344 A HOH 345 3 HOH HOH 345 A HOH 346 3 HOH HOH 346 A HOH 347 3 HOH HOH 347 A HOH 348 3 HOH HOH 348 A HOH 349 3 HOH HOH 349 A HOH 350 3 HOH HOH 350 A HOH 352 3 HOH HOH 352 A HOH 353 3 HOH HOH 353 A HOH 354 3 HOH HOH 354 A HOH 355 3 HOH HOH 355 A HOH 356 3 HOH HOH 356 A HOH 358 3 HOH HOH 358 A HOH 359 3 HOH HOH 359 A HOH 360 3 HOH HOH 360 A HOH 361 3 HOH HOH 361 A HOH 362 3 HOH HOH 362 A HOH 363 3 HOH HOH 363 A HOH 351 3 HOH HOH 351 P HOH 357 3 HOH HOH 357 P n 1 3 A ARG 4 n 2 ARG 4 A ARG 5 n 3 ARG 5 A TRP 6 n 4 TRP 6 A PHE 7 n 5 PHE 7 A HIS 8 n 6 HIS 8 A PRO 9 n 7 PRO 9 A ASN 10 n 8 ASN 10 A ILE 11 n 9 ILE 11 A THR 12 n 10 THR 12 A GLY 13 n 11 GLY 13 A VAL 14 n 12 VAL 14 A GLU 15 n 13 GLU 15 A ALA 16 n 14 ALA 16 A GLU 17 n 15 GLU 17 A ASN 18 n 16 ASN 18 A LEU 19 n 17 LEU 19 A LEU 20 n 18 LEU 20 A LEU 21 n 19 LEU 21 A THR 22 n 20 THR 22 A ARG 23 n 21 ARG 23 A GLY 24 n 22 GLY 24 A VAL 25 n 23 VAL 25 A ASP 26 n 24 ASP 26 A GLY 27 n 25 GLY 27 A SER 28 n 26 SER 28 A PHE 29 n 27 PHE 29 A LEU 30 n 28 LEU 30 A ALA 31 n 29 ALA 31 A ARG 32 n 30 ARG 32 A PRO 33 n 31 PRO 33 A SER 34 n 32 SER 34 A LYS 35 n 33 LYS 35 A SER 36 n 34 SER 36 A ASN 37 n 35 ASN 37 A PRO 38 n 36 PRO 38 A GLY 39 n 37 GLY 39 A ASP 40 n 38 ASP 40 A PHE 41 n 39 PHE 41 A THR 42 n 40 THR 42 A LEU 43 n 41 LEU 43 A SER 44 n 42 SER 44 A VAL 45 n 43 VAL 45 A ARG 46 n 44 ARG 46 A ARG 47 n 45 ARG 47 A ASN 48 n 46 ASN 48 A GLY 49 n 47 GLY 49 A ALA 50 n 48 ALA 50 A VAL 51 n 49 VAL 51 A THR 52 n 50 THR 52 A HIS 53 n 51 HIS 53 A ILE 54 n 52 ILE 54 A LYS 55 n 53 LYS 55 A ILE 56 n 54 ILE 56 A GLN 57 n 55 GLN 57 A ASN 58 n 56 ASN 58 A THR 59 n 57 THR 59 A GLY 60 n 58 GLY 60 A ASP 61 n 59 ASP 61 A TYR 62 n 60 TYR 62 A TYR 63 n 61 TYR 63 A ASP 64 n 62 ASP 64 A LEU 65 n 63 LEU 65 A TYR 66 n 64 TYR 66 A GLY 67 n 65 GLY 67 A GLY 68 n 66 GLY 68 A GLU 69 n 67 GLU 69 A LYS 70 n 68 LYS 70 A PHE 71 n 69 PHE 71 A ALA 72 n 70 ALA 72 A THR 73 n 71 THR 73 A LEU 74 n 72 LEU 74 A ALA 75 n 73 ALA 75 A GLU 76 n 74 GLU 76 A LEU 77 n 75 LEU 77 A VAL 78 n 76 VAL 78 A GLN 79 n 77 GLN 79 A TYR 80 n 78 TYR 80 A TYR 81 n 79 TYR 81 A MET 82 n 80 MET 82 A GLU 83 n 81 GLU 83 A HIS 84 n 82 HIS 84 A HIS 85 n 83 HIS 85 A GLY 86 n 84 GLY 86 A GLN 87 n 85 GLN 87 A LEU 88 n 86 LEU 88 A LYS 89 n 87 LYS 89 A GLU 90 n 88 GLU 90 A LYS 91 n 89 LYS 91 A ASN 92 n 90 ASN 92 A GLY 93 n 91 GLY 93 A ASP 94 n 92 ASP 94 A VAL 95 n 93 VAL 95 A ILE 96 n 94 ILE 96 A GLU 97 n 95 GLU 97 A LEU 98 n 96 LEU 98 A LYS 99 n 97 LYS 99 A TYR 100 n 98 TYR 100 A PRO 101 n 99 PRO 101 A LEU 102 n 100 LEU 102 A ASN 103 n 101 ASN 103 A n 1 -3 P GLY -2 n 2 GLY -2 P GLY -1 n 3 GLY -1 P TYR 0 n 4 PTR 0 P MET 1 n 5 MET 1 P ASP 2 n 6 ASP 2 P MET 3 n 7 MET 3 P SER 4 n 8 SER 4 P n 9 5 P n 10 6 P n 11 7 P author_and_software_defined_assembly PISA 2 dimeric 870 -14 5610 P PTR 0 O-PHOSPHOTYROSINE B PTR 4 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ASP 64 A O ASP 62 A N GLN 57 A N GLN 55 A N ILE 56 A N ILE 54 A O PHE 41 A O PHE 39 A N ARG 46 A N ARG 44 A O SER 28 A O SER 26 A N PHE 29 A N PHE 27 A O TYR 100 A O TYR 98 1 A CG ARG 4 A CG ARG 2 1 Y 1 A CD ARG 4 A CD ARG 2 1 Y 1 A NE ARG 4 A NE ARG 2 1 Y 1 A CZ ARG 4 A CZ ARG 2 1 Y 1 A NH1 ARG 4 A NH1 ARG 2 1 Y 1 A NH2 ARG 4 A NH2 ARG 2 1 Y 1 A CG ARG 5 A CG ARG 3 1 Y 1 A CD ARG 5 A CD ARG 3 1 Y 1 A NE ARG 5 A NE ARG 3 1 Y 1 A CZ ARG 5 A CZ ARG 3 1 Y 1 A NH1 ARG 5 A NH1 ARG 3 1 Y 1 A NH2 ARG 5 A NH2 ARG 3 1 Y 1 A CG LYS 35 A CG LYS 33 1 Y 1 A CD LYS 35 A CD LYS 33 1 Y 1 A CE LYS 35 A CE LYS 33 1 Y 1 A NZ LYS 35 A NZ LYS 33 1 Y 1 A CG LYS 91 A CG LYS 89 1 Y 1 A CD LYS 91 A CD LYS 89 1 Y 1 A CE LYS 91 A CE LYS 89 1 Y 1 A NZ LYS 91 A NZ LYS 89 1 Y 1 A O ASN 103 A O ASN 101 1 Y 1 P O SER 4 B O SER 8 1 Y 1 A MET 3 A MET 1 1 Y 1 P ASP -3 B ASP 1 1 Y 1 P LYS 5 B LYS 9 1 Y 1 P GLY 6 B GLY 10 1 Y 1 P SER 7 B SER 11 1 Y 1 5.85 0.80 106.30 112.15 A A A CD1 CG CD2 TRP TRP TRP 6 6 6 N 1 -5.98 0.80 107.30 101.32 A A A CE2 CD2 CG TRP TRP TRP 6 6 6 N 1 3.44 0.50 120.30 123.74 A A A NE CZ NH1 ARG ARG ARG 46 46 46 N 1 3.21 0.50 120.30 123.51 A A A NE CZ NH1 ARG ARG ARG 47 47 47 N 1 -3.44 0.50 120.30 116.86 A A A NE CZ NH2 ARG ARG ARG 47 47 47 N 1 A A NE2 CD2 HIS HIS 84 84 -0.070 0.011 1.373 1.303 N 1 A A NE2 CD2 HIS HIS 85 85 -0.066 0.011 1.373 1.307 N 1 A ASN 48 37.65 60.45 1 A LEU 65 -99.55 50.93 1 A LYS 91 53.32 -71.44 0.189 0.189 2.3 6.0 5362 1 2. 2.3 6.0 63 900 4 0 833 0.012 2.9 model building X-PLOR refinement X-PLOR phasing X-PLOR TYROSINE PHOSPHATASE SYP (N-TERMINAL SH2 DOMAIN) (PTP1D, SHPTP2) (E.C.3.1.3.48) COMPLEXED WITH THE PEPTIDE PDGFR-740 CRYSTAL STRUCTURES OF PEPTIDE COMPLEXES OF THE AMINO-TERMINAL SH2 DOMAIN OF THE SYP TYROSINE PHOSPHATASE 1 N N 2 N N 3 N N 3 N N A THR 12 A THR 10 HELX_P A ARG 23 A ARG 21 1 1 12 A THR 73 A THR 71 HELX_P A HIS 84 A HIS 82 1 2 12 covale 1.338 P GLY -1 B C GLY 3 1_555 P PTR 0 B N PTR 4 1_555 covale 1.327 P PTR 0 B C PTR 4 1_555 P MET 1 B N MET 5 1_555 HYDROLASE(SH2 DOMAIN) HYDROLASE(SH2 DOMAIN) PTN11_MOUSE UNP 1 4 P35235 PGFRB_MOUSE UNP 2 736 P05622 4 103 1AYC 4 103 P35235 A 1 2 101 736 744 1AYC -3 5 P05622 P 2 1 9 5 anti-parallel anti-parallel anti-parallel parallel A TYR 63 A TYR 61 A ASP 64 A ASP 62 A ALA 50 A ALA 48 A ASN 58 A ASN 56 A PHE 41 A PHE 39 A ARG 47 A ARG 45 A SER 28 A SER 26 A PRO 33 A PRO 31 A TYR 100 A TYR 98 A PRO 101 A PRO 99 96 P 43 21 2