0.016077
0.000000
0.000000
0.000000
0.016077
0.000000
0.000000
0.000000
0.013387
0.00000
0.00000
0.00000
Lee, C.-H.
Kuriyan, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
62.200
62.200
74.700
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C9 H12 N O6 P
261.168
n
O-PHOSPHOTYROSINE
PHOSPHONOTYROSINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
2
423
438
10.1016/S0969-2126(00)00044-7
7521735
Crystal structures of peptide complexes of the amino-terminal SH2 domain of the Syp tyrosine phosphatase.
1994
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
72
779
Binding of a High Affinity Phosphotyrosyl Peptide to the Src Sh2 Domain: Crystal Structures of the Complexed and Peptide-Free Forms
1993
UK
Curr.Opin.Struct.Biol.
COSBEF
0801
0959-440X
3
828
Structures of Sh2 and SH3 Domains
1993
UK
Nature
NATUAS
0006
0028-0836
358
646
Crystal Structure of the Phosphotyrosine Recognition Domain Sh2 of V-Src Complexed with Tyrosine-Phosphorylated Peptides
1992
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
11528.979
PROTEIN-TYROSINE PHOSPHATASE SYP (N-TERMINAL SH2 DOMAIN)
3.1.3.48
1
man
polymer
1228.226
PEPTIDE PDGFR-740
1
man
polymer
18.015
water
63
nat
water
no
no
MRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYM
EHHGQLKEKNGDVIELKYPLN
MRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYM
EHHGQLKEKNGDVIELKYPLN
A
polypeptide(L)
no
yes
DGG(PTR)MDMSKGS
DGGYMDMSKGS
P
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
sample
10090
Mus musculus
house mouse
Mus
sample
10090
Mus musculus
2.83
56.55
repository
Initial release
Version format compliance
Version format compliance
1
0
1994-08-31
1
1
2008-03-24
1
2
2011-07-13
Y
1994-05-15
REL
REL
HOH
water
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
325
3
HOH
HOH
325
A
HOH
326
3
HOH
HOH
326
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
329
3
HOH
HOH
329
A
HOH
330
3
HOH
HOH
330
A
HOH
331
3
HOH
HOH
331
A
HOH
332
3
HOH
HOH
332
A
HOH
333
3
HOH
HOH
333
A
HOH
334
3
HOH
HOH
334
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
337
3
HOH
HOH
337
A
HOH
338
3
HOH
HOH
338
A
HOH
339
3
HOH
HOH
339
A
HOH
340
3
HOH
HOH
340
A
HOH
341
3
HOH
HOH
341
A
HOH
342
3
HOH
HOH
342
A
HOH
343
3
HOH
HOH
343
A
HOH
344
3
HOH
HOH
344
A
HOH
345
3
HOH
HOH
345
A
HOH
346
3
HOH
HOH
346
A
HOH
347
3
HOH
HOH
347
A
HOH
348
3
HOH
HOH
348
A
HOH
349
3
HOH
HOH
349
A
HOH
350
3
HOH
HOH
350
A
HOH
352
3
HOH
HOH
352
A
HOH
353
3
HOH
HOH
353
A
HOH
354
3
HOH
HOH
354
A
HOH
355
3
HOH
HOH
355
A
HOH
356
3
HOH
HOH
356
A
HOH
358
3
HOH
HOH
358
A
HOH
359
3
HOH
HOH
359
A
HOH
360
3
HOH
HOH
360
A
HOH
361
3
HOH
HOH
361
A
HOH
362
3
HOH
HOH
362
A
HOH
363
3
HOH
HOH
363
A
HOH
351
3
HOH
HOH
351
P
HOH
357
3
HOH
HOH
357
P
n
1
3
A
ARG
4
n
2
ARG
4
A
ARG
5
n
3
ARG
5
A
TRP
6
n
4
TRP
6
A
PHE
7
n
5
PHE
7
A
HIS
8
n
6
HIS
8
A
PRO
9
n
7
PRO
9
A
ASN
10
n
8
ASN
10
A
ILE
11
n
9
ILE
11
A
THR
12
n
10
THR
12
A
GLY
13
n
11
GLY
13
A
VAL
14
n
12
VAL
14
A
GLU
15
n
13
GLU
15
A
ALA
16
n
14
ALA
16
A
GLU
17
n
15
GLU
17
A
ASN
18
n
16
ASN
18
A
LEU
19
n
17
LEU
19
A
LEU
20
n
18
LEU
20
A
LEU
21
n
19
LEU
21
A
THR
22
n
20
THR
22
A
ARG
23
n
21
ARG
23
A
GLY
24
n
22
GLY
24
A
VAL
25
n
23
VAL
25
A
ASP
26
n
24
ASP
26
A
GLY
27
n
25
GLY
27
A
SER
28
n
26
SER
28
A
PHE
29
n
27
PHE
29
A
LEU
30
n
28
LEU
30
A
ALA
31
n
29
ALA
31
A
ARG
32
n
30
ARG
32
A
PRO
33
n
31
PRO
33
A
SER
34
n
32
SER
34
A
LYS
35
n
33
LYS
35
A
SER
36
n
34
SER
36
A
ASN
37
n
35
ASN
37
A
PRO
38
n
36
PRO
38
A
GLY
39
n
37
GLY
39
A
ASP
40
n
38
ASP
40
A
PHE
41
n
39
PHE
41
A
THR
42
n
40
THR
42
A
LEU
43
n
41
LEU
43
A
SER
44
n
42
SER
44
A
VAL
45
n
43
VAL
45
A
ARG
46
n
44
ARG
46
A
ARG
47
n
45
ARG
47
A
ASN
48
n
46
ASN
48
A
GLY
49
n
47
GLY
49
A
ALA
50
n
48
ALA
50
A
VAL
51
n
49
VAL
51
A
THR
52
n
50
THR
52
A
HIS
53
n
51
HIS
53
A
ILE
54
n
52
ILE
54
A
LYS
55
n
53
LYS
55
A
ILE
56
n
54
ILE
56
A
GLN
57
n
55
GLN
57
A
ASN
58
n
56
ASN
58
A
THR
59
n
57
THR
59
A
GLY
60
n
58
GLY
60
A
ASP
61
n
59
ASP
61
A
TYR
62
n
60
TYR
62
A
TYR
63
n
61
TYR
63
A
ASP
64
n
62
ASP
64
A
LEU
65
n
63
LEU
65
A
TYR
66
n
64
TYR
66
A
GLY
67
n
65
GLY
67
A
GLY
68
n
66
GLY
68
A
GLU
69
n
67
GLU
69
A
LYS
70
n
68
LYS
70
A
PHE
71
n
69
PHE
71
A
ALA
72
n
70
ALA
72
A
THR
73
n
71
THR
73
A
LEU
74
n
72
LEU
74
A
ALA
75
n
73
ALA
75
A
GLU
76
n
74
GLU
76
A
LEU
77
n
75
LEU
77
A
VAL
78
n
76
VAL
78
A
GLN
79
n
77
GLN
79
A
TYR
80
n
78
TYR
80
A
TYR
81
n
79
TYR
81
A
MET
82
n
80
MET
82
A
GLU
83
n
81
GLU
83
A
HIS
84
n
82
HIS
84
A
HIS
85
n
83
HIS
85
A
GLY
86
n
84
GLY
86
A
GLN
87
n
85
GLN
87
A
LEU
88
n
86
LEU
88
A
LYS
89
n
87
LYS
89
A
GLU
90
n
88
GLU
90
A
LYS
91
n
89
LYS
91
A
ASN
92
n
90
ASN
92
A
GLY
93
n
91
GLY
93
A
ASP
94
n
92
ASP
94
A
VAL
95
n
93
VAL
95
A
ILE
96
n
94
ILE
96
A
GLU
97
n
95
GLU
97
A
LEU
98
n
96
LEU
98
A
LYS
99
n
97
LYS
99
A
TYR
100
n
98
TYR
100
A
PRO
101
n
99
PRO
101
A
LEU
102
n
100
LEU
102
A
ASN
103
n
101
ASN
103
A
n
1
-3
P
GLY
-2
n
2
GLY
-2
P
GLY
-1
n
3
GLY
-1
P
TYR
0
n
4
PTR
0
P
MET
1
n
5
MET
1
P
ASP
2
n
6
ASP
2
P
MET
3
n
7
MET
3
P
SER
4
n
8
SER
4
P
n
9
5
P
n
10
6
P
n
11
7
P
author_and_software_defined_assembly
PISA
2
dimeric
870
-14
5610
P
PTR
0
O-PHOSPHOTYROSINE
B
PTR
4
TYR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASP
64
A
O
ASP
62
A
N
GLN
57
A
N
GLN
55
A
N
ILE
56
A
N
ILE
54
A
O
PHE
41
A
O
PHE
39
A
N
ARG
46
A
N
ARG
44
A
O
SER
28
A
O
SER
26
A
N
PHE
29
A
N
PHE
27
A
O
TYR
100
A
O
TYR
98
1
A
CG
ARG
4
A
CG
ARG
2
1
Y
1
A
CD
ARG
4
A
CD
ARG
2
1
Y
1
A
NE
ARG
4
A
NE
ARG
2
1
Y
1
A
CZ
ARG
4
A
CZ
ARG
2
1
Y
1
A
NH1
ARG
4
A
NH1
ARG
2
1
Y
1
A
NH2
ARG
4
A
NH2
ARG
2
1
Y
1
A
CG
ARG
5
A
CG
ARG
3
1
Y
1
A
CD
ARG
5
A
CD
ARG
3
1
Y
1
A
NE
ARG
5
A
NE
ARG
3
1
Y
1
A
CZ
ARG
5
A
CZ
ARG
3
1
Y
1
A
NH1
ARG
5
A
NH1
ARG
3
1
Y
1
A
NH2
ARG
5
A
NH2
ARG
3
1
Y
1
A
CG
LYS
35
A
CG
LYS
33
1
Y
1
A
CD
LYS
35
A
CD
LYS
33
1
Y
1
A
CE
LYS
35
A
CE
LYS
33
1
Y
1
A
NZ
LYS
35
A
NZ
LYS
33
1
Y
1
A
CG
LYS
91
A
CG
LYS
89
1
Y
1
A
CD
LYS
91
A
CD
LYS
89
1
Y
1
A
CE
LYS
91
A
CE
LYS
89
1
Y
1
A
NZ
LYS
91
A
NZ
LYS
89
1
Y
1
A
O
ASN
103
A
O
ASN
101
1
Y
1
P
O
SER
4
B
O
SER
8
1
Y
1
A
MET
3
A
MET
1
1
Y
1
P
ASP
-3
B
ASP
1
1
Y
1
P
LYS
5
B
LYS
9
1
Y
1
P
GLY
6
B
GLY
10
1
Y
1
P
SER
7
B
SER
11
1
Y
1
5.85
0.80
106.30
112.15
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
6
6
6
N
1
-5.98
0.80
107.30
101.32
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
6
6
6
N
1
3.44
0.50
120.30
123.74
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
46
46
46
N
1
3.21
0.50
120.30
123.51
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
47
47
47
N
1
-3.44
0.50
120.30
116.86
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
47
47
47
N
1
A
A
NE2
CD2
HIS
HIS
84
84
-0.070
0.011
1.373
1.303
N
1
A
A
NE2
CD2
HIS
HIS
85
85
-0.066
0.011
1.373
1.307
N
1
A
ASN
48
37.65
60.45
1
A
LEU
65
-99.55
50.93
1
A
LYS
91
53.32
-71.44
0.189
0.189
2.3
6.0
5362
1
2.
2.3
6.0
63
900
4
0
833
0.012
2.9
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
TYROSINE PHOSPHATASE SYP (N-TERMINAL SH2 DOMAIN) (PTP1D, SHPTP2) (E.C.3.1.3.48) COMPLEXED WITH THE PEPTIDE PDGFR-740
CRYSTAL STRUCTURES OF PEPTIDE COMPLEXES OF THE AMINO-TERMINAL SH2 DOMAIN OF THE SYP TYROSINE PHOSPHATASE
1
N
N
2
N
N
3
N
N
3
N
N
A
THR
12
A
THR
10
HELX_P
A
ARG
23
A
ARG
21
1
1
12
A
THR
73
A
THR
71
HELX_P
A
HIS
84
A
HIS
82
1
2
12
covale
1.338
P
GLY
-1
B
C
GLY
3
1_555
P
PTR
0
B
N
PTR
4
1_555
covale
1.327
P
PTR
0
B
C
PTR
4
1_555
P
MET
1
B
N
MET
5
1_555
HYDROLASE(SH2 DOMAIN)
HYDROLASE(SH2 DOMAIN)
PTN11_MOUSE
UNP
1
4
P35235
PGFRB_MOUSE
UNP
2
736
P05622
4
103
1AYC
4
103
P35235
A
1
2
101
736
744
1AYC
-3
5
P05622
P
2
1
9
5
anti-parallel
anti-parallel
anti-parallel
parallel
A
TYR
63
A
TYR
61
A
ASP
64
A
ASP
62
A
ALA
50
A
ALA
48
A
ASN
58
A
ASN
56
A
PHE
41
A
PHE
39
A
ARG
47
A
ARG
45
A
SER
28
A
SER
26
A
PRO
33
A
PRO
31
A
TYR
100
A
TYR
98
A
PRO
101
A
PRO
99
96
P 43 21 2