0.008791
0.000000
0.000000
0.000000
0.006832
0.000000
0.000000
0.000000
0.009101
0.00000
0.00000
0.00000
Worthylake, D.K.
Prakash, S.
Prakash, L.
Hill, C.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
90.00
113.750
146.360
109.880
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
273
6271
6276
10.1074/jbc.273.11.6271
9497353
Crystal structure of the Saccharomyces cerevisiae ubiquitin-conjugating enzyme Rad6 at 2.6 A resolution.
1998
10.2210/pdb1ayz/pdb
pdb_00001ayz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1996-06
MARRESEARCH
M
x-ray
1
0.978
1.0
X12B
NSLS
0.978
SYNCHROTRON
NSLS BEAMLINE X12B
19364.291
UBIQUITIN-CONJUGATING ENZYME RAD6
6.3.2.19
3
nat
polymer
18.015
water
103
nat
water
UBC2
no
no
MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN
VYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDDMDDDDDDD
DDDDDDEAD
MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN
VYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDDMDDDDDDD
DDDDDDEAD
A,B,C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
Saccharomyces
sample
4932
Saccharomyces cerevisiae
1
3.9
68.
5.0
pH 5.0
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Database references
Refinement description
1
0
1998-08-26
1
1
2008-03-24
1
2
2011-07-13
1
3
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
Y
BNL
1997-11-12
REL
REL
HOH
water
1AAK
PDB ENTRY 1AAK
PDB
experimental model
HOH
1001
2
HOH
HOH
1001
A
HOH
1002
2
HOH
HOH
1002
A
HOH
1003
2
HOH
HOH
1003
A
HOH
1004
2
HOH
HOH
1004
A
HOH
1005
2
HOH
HOH
1005
A
HOH
1006
2
HOH
HOH
1006
A
HOH
1007
2
HOH
HOH
1007
A
HOH
1008
2
HOH
HOH
1008
A
HOH
1009
2
HOH
HOH
1009
A
HOH
1013
2
HOH
HOH
1013
A
HOH
1014
2
HOH
HOH
1014
A
HOH
1015
2
HOH
HOH
1015
A
HOH
1016
2
HOH
HOH
1016
A
HOH
1017
2
HOH
HOH
1017
A
HOH
1018
2
HOH
HOH
1018
A
HOH
1019
2
HOH
HOH
1019
A
HOH
1035
2
HOH
HOH
1035
A
HOH
1036
2
HOH
HOH
1036
A
HOH
1037
2
HOH
HOH
1037
A
HOH
1038
2
HOH
HOH
1038
A
HOH
1043
2
HOH
HOH
1043
A
HOH
1046
2
HOH
HOH
1046
A
HOH
1047
2
HOH
HOH
1047
A
HOH
1048
2
HOH
HOH
1048
A
HOH
1049
2
HOH
HOH
1049
A
HOH
1050
2
HOH
HOH
1050
A
HOH
1051
2
HOH
HOH
1051
A
HOH
1052
2
HOH
HOH
1052
A
HOH
1053
2
HOH
HOH
1053
A
HOH
1054
2
HOH
HOH
1054
A
HOH
1062
2
HOH
HOH
1062
A
HOH
1063
2
HOH
HOH
1063
A
HOH
1064
2
HOH
HOH
1064
A
HOH
1066
2
HOH
HOH
1066
A
HOH
1067
2
HOH
HOH
1067
A
HOH
1068
2
HOH
HOH
1068
A
HOH
1074
2
HOH
HOH
1074
A
HOH
1075
2
HOH
HOH
1075
A
HOH
1077
2
HOH
HOH
1077
A
HOH
1086
2
HOH
HOH
1086
A
HOH
1087
2
HOH
HOH
1087
A
HOH
1088
2
HOH
HOH
1088
A
HOH
1089
2
HOH
HOH
1089
A
HOH
1090
2
HOH
HOH
1090
A
HOH
1091
2
HOH
HOH
1091
A
HOH
1092
2
HOH
HOH
1092
A
HOH
1093
2
HOH
HOH
1093
A
HOH
1094
2
HOH
HOH
1094
A
HOH
1097
2
HOH
HOH
1097
A
HOH
1010
2
HOH
HOH
1010
B
HOH
1011
2
HOH
HOH
1011
B
HOH
1020
2
HOH
HOH
1020
B
HOH
1021
2
HOH
HOH
1021
B
HOH
1027
2
HOH
HOH
1027
B
HOH
1028
2
HOH
HOH
1028
B
HOH
1029
2
HOH
HOH
1029
B
HOH
1030
2
HOH
HOH
1030
B
HOH
1031
2
HOH
HOH
1031
B
HOH
1039
2
HOH
HOH
1039
B
HOH
1040
2
HOH
HOH
1040
B
HOH
1041
2
HOH
HOH
1041
B
HOH
1042
2
HOH
HOH
1042
B
HOH
1044
2
HOH
HOH
1044
B
HOH
1045
2
HOH
HOH
1045
B
HOH
1055
2
HOH
HOH
1055
B
HOH
1056
2
HOH
HOH
1056
B
HOH
1057
2
HOH
HOH
1057
B
HOH
1065
2
HOH
HOH
1065
B
HOH
1069
2
HOH
HOH
1069
B
HOH
1070
2
HOH
HOH
1070
B
HOH
1071
2
HOH
HOH
1071
B
HOH
1072
2
HOH
HOH
1072
B
HOH
1073
2
HOH
HOH
1073
B
HOH
1076
2
HOH
HOH
1076
B
HOH
1078
2
HOH
HOH
1078
B
HOH
1079
2
HOH
HOH
1079
B
HOH
1085
2
HOH
HOH
1085
B
HOH
1095
2
HOH
HOH
1095
B
HOH
1096
2
HOH
HOH
1096
B
HOH
1098
2
HOH
HOH
1098
B
HOH
1099
2
HOH
HOH
1099
B
HOH
1100
2
HOH
HOH
1100
B
HOH
1101
2
HOH
HOH
1101
B
HOH
1102
2
HOH
HOH
1102
B
HOH
1012
2
HOH
HOH
1012
C
HOH
1022
2
HOH
HOH
1022
C
HOH
1023
2
HOH
HOH
1023
C
HOH
1024
2
HOH
HOH
1024
C
HOH
1025
2
HOH
HOH
1025
C
HOH
1026
2
HOH
HOH
1026
C
HOH
1032
2
HOH
HOH
1032
C
HOH
1033
2
HOH
HOH
1033
C
HOH
1034
2
HOH
HOH
1034
C
HOH
1058
2
HOH
HOH
1058
C
HOH
1059
2
HOH
HOH
1059
C
HOH
1060
2
HOH
HOH
1060
C
HOH
1061
2
HOH
HOH
1061
C
HOH
1080
2
HOH
HOH
1080
C
HOH
1081
2
HOH
HOH
1081
C
HOH
1082
2
HOH
HOH
1082
C
HOH
1083
2
HOH
HOH
1083
C
HOH
1084
2
HOH
HOH
1084
C
HOH
1103
2
HOH
HOH
1103
C
n
1
1
A
SER
2
n
2
SER
2
A
THR
3
n
3
THR
3
A
PRO
4
n
4
PRO
4
A
ALA
5
n
5
ALA
5
A
ARG
6
n
6
ARG
6
A
ARG
7
n
7
ARG
7
A
ARG
8
n
8
ARG
8
A
LEU
9
n
9
LEU
9
A
MET
10
n
10
MET
10
A
ARG
11
n
11
ARG
11
A
ASP
12
n
12
ASP
12
A
PHE
13
n
13
PHE
13
A
LYS
14
n
14
LYS
14
A
ARG
15
n
15
ARG
15
A
MET
16
n
16
MET
16
A
LYS
17
n
17
LYS
17
A
GLU
18
n
18
GLU
18
A
ASP
19
n
19
ASP
19
A
ALA
20
n
20
ALA
20
A
PRO
21
n
21
PRO
21
A
PRO
22
n
22
PRO
22
A
GLY
23
n
23
GLY
23
A
VAL
24
n
24
VAL
24
A
SER
25
n
25
SER
25
A
ALA
26
n
26
ALA
26
A
SER
27
n
27
SER
27
A
PRO
28
n
28
PRO
28
A
LEU
29
n
29
LEU
29
A
PRO
30
n
30
PRO
30
A
ASP
31
n
31
ASP
31
A
ASN
32
n
32
ASN
32
A
VAL
33
n
33
VAL
33
A
MET
34
n
34
MET
34
A
VAL
35
n
35
VAL
35
A
TRP
36
n
36
TRP
36
A
ASN
37
n
37
ASN
37
A
ALA
38
n
38
ALA
38
A
MET
39
n
39
MET
39
A
ILE
40
n
40
ILE
40
A
ILE
41
n
41
ILE
41
A
GLY
42
n
42
GLY
42
A
PRO
43
n
43
PRO
43
A
ALA
44
n
44
ALA
44
A
ASP
45
n
45
ASP
45
A
THR
46
n
46
THR
46
A
PRO
47
n
47
PRO
47
A
TYR
48
n
48
TYR
48
A
GLU
49
n
49
GLU
49
A
ASP
50
n
50
ASP
50
A
GLY
51
n
51
GLY
51
A
THR
52
n
52
THR
52
A
PHE
53
n
53
PHE
53
A
ARG
54
n
54
ARG
54
A
LEU
55
n
55
LEU
55
A
LEU
56
n
56
LEU
56
A
LEU
57
n
57
LEU
57
A
GLU
58
n
58
GLU
58
A
PHE
59
n
59
PHE
59
A
ASP
60
n
60
ASP
60
A
GLU
61
n
61
GLU
61
A
GLU
62
n
62
GLU
62
A
TYR
63
n
63
TYR
63
A
PRO
64
n
64
PRO
64
A
ASN
65
n
65
ASN
65
A
LYS
66
n
66
LYS
66
A
PRO
67
n
67
PRO
67
A
PRO
68
n
68
PRO
68
A
HIS
69
n
69
HIS
69
A
VAL
70
n
70
VAL
70
A
LYS
71
n
71
LYS
71
A
PHE
72
n
72
PHE
72
A
LEU
73
n
73
LEU
73
A
SER
74
n
74
SER
74
A
GLU
75
n
75
GLU
75
A
MET
76
n
76
MET
76
A
PHE
77
n
77
PHE
77
A
HIS
78
n
78
HIS
78
A
PRO
79
n
79
PRO
79
A
ASN
80
n
80
ASN
80
A
VAL
81
n
81
VAL
81
A
TYR
82
n
82
TYR
82
A
ALA
83
n
83
ALA
83
A
ASN
84
n
84
ASN
84
A
GLY
85
n
85
GLY
85
A
GLU
86
n
86
GLU
86
A
ILE
87
n
87
ILE
87
A
CYS
88
n
88
CYS
88
A
LEU
89
n
89
LEU
89
A
ASP
90
n
90
ASP
90
A
ILE
91
n
91
ILE
91
A
LEU
92
n
92
LEU
92
A
GLN
93
n
93
GLN
93
A
ASN
94
n
94
ASN
94
A
ARG
95
n
95
ARG
95
A
TRP
96
n
96
TRP
96
A
THR
97
n
97
THR
97
A
PRO
98
n
98
PRO
98
A
THR
99
n
99
THR
99
A
TYR
100
n
100
TYR
100
A
ASP
101
n
101
ASP
101
A
VAL
102
n
102
VAL
102
A
ALA
103
n
103
ALA
103
A
SER
104
n
104
SER
104
A
ILE
105
n
105
ILE
105
A
LEU
106
n
106
LEU
106
A
THR
107
n
107
THR
107
A
SER
108
n
108
SER
108
A
ILE
109
n
109
ILE
109
A
GLN
110
n
110
GLN
110
A
SER
111
n
111
SER
111
A
LEU
112
n
112
LEU
112
A
PHE
113
n
113
PHE
113
A
ASN
114
n
114
ASN
114
A
ASP
115
n
115
ASP
115
A
PRO
116
n
116
PRO
116
A
ASN
117
n
117
ASN
117
A
PRO
118
n
118
PRO
118
A
ALA
119
n
119
ALA
119
A
SER
120
n
120
SER
120
A
PRO
121
n
121
PRO
121
A
ALA
122
n
122
ALA
122
A
ASN
123
n
123
ASN
123
A
VAL
124
n
124
VAL
124
A
GLU
125
n
125
GLU
125
A
ALA
126
n
126
ALA
126
A
ALA
127
n
127
ALA
127
A
THR
128
n
128
THR
128
A
LEU
129
n
129
LEU
129
A
PHE
130
n
130
PHE
130
A
LYS
131
n
131
LYS
131
A
ASP
132
n
132
ASP
132
A
HIS
133
n
133
HIS
133
A
LYS
134
n
134
LYS
134
A
SER
135
n
135
SER
135
A
GLN
136
n
136
GLN
136
A
TYR
137
n
137
TYR
137
A
VAL
138
n
138
VAL
138
A
LYS
139
n
139
LYS
139
A
ARG
140
n
140
ARG
140
A
VAL
141
n
141
VAL
141
A
LYS
142
n
142
LYS
142
A
GLU
143
n
143
GLU
143
A
THR
144
n
144
THR
144
A
VAL
145
n
145
VAL
145
A
GLU
146
n
146
GLU
146
A
LYS
147
n
147
LYS
147
A
SER
148
n
148
SER
148
A
TRP
149
n
149
TRP
149
A
GLU
150
n
150
GLU
150
A
ASP
151
n
151
ASP
151
A
ASP
152
n
152
ASP
152
A
MET
153
n
153
MET
153
A
ASP
154
n
154
ASP
154
A
n
155
155
A
n
156
156
A
n
157
157
A
n
158
158
A
n
159
159
A
n
160
160
A
n
161
161
A
n
162
162
A
n
163
163
A
n
164
164
A
n
165
165
A
n
166
166
A
n
167
167
A
n
168
168
A
n
169
169
A
n
1
1
B
SER
2
n
2
SER
2
B
THR
3
n
3
THR
3
B
PRO
4
n
4
PRO
4
B
ALA
5
n
5
ALA
5
B
ARG
6
n
6
ARG
6
B
ARG
7
n
7
ARG
7
B
ARG
8
n
8
ARG
8
B
LEU
9
n
9
LEU
9
B
MET
10
n
10
MET
10
B
ARG
11
n
11
ARG
11
B
ASP
12
n
12
ASP
12
B
PHE
13
n
13
PHE
13
B
LYS
14
n
14
LYS
14
B
ARG
15
n
15
ARG
15
B
MET
16
n
16
MET
16
B
LYS
17
n
17
LYS
17
B
GLU
18
n
18
GLU
18
B
ASP
19
n
19
ASP
19
B
ALA
20
n
20
ALA
20
B
PRO
21
n
21
PRO
21
B
PRO
22
n
22
PRO
22
B
GLY
23
n
23
GLY
23
B
VAL
24
n
24
VAL
24
B
SER
25
n
25
SER
25
B
ALA
26
n
26
ALA
26
B
SER
27
n
27
SER
27
B
PRO
28
n
28
PRO
28
B
LEU
29
n
29
LEU
29
B
PRO
30
n
30
PRO
30
B
ASP
31
n
31
ASP
31
B
ASN
32
n
32
ASN
32
B
VAL
33
n
33
VAL
33
B
MET
34
n
34
MET
34
B
VAL
35
n
35
VAL
35
B
TRP
36
n
36
TRP
36
B
ASN
37
n
37
ASN
37
B
ALA
38
n
38
ALA
38
B
MET
39
n
39
MET
39
B
ILE
40
n
40
ILE
40
B
ILE
41
n
41
ILE
41
B
GLY
42
n
42
GLY
42
B
PRO
43
n
43
PRO
43
B
ALA
44
n
44
ALA
44
B
ASP
45
n
45
ASP
45
B
THR
46
n
46
THR
46
B
PRO
47
n
47
PRO
47
B
TYR
48
n
48
TYR
48
B
GLU
49
n
49
GLU
49
B
ASP
50
n
50
ASP
50
B
GLY
51
n
51
GLY
51
B
THR
52
n
52
THR
52
B
PHE
53
n
53
PHE
53
B
ARG
54
n
54
ARG
54
B
LEU
55
n
55
LEU
55
B
LEU
56
n
56
LEU
56
B
LEU
57
n
57
LEU
57
B
GLU
58
n
58
GLU
58
B
PHE
59
n
59
PHE
59
B
ASP
60
n
60
ASP
60
B
GLU
61
n
61
GLU
61
B
GLU
62
n
62
GLU
62
B
TYR
63
n
63
TYR
63
B
PRO
64
n
64
PRO
64
B
ASN
65
n
65
ASN
65
B
LYS
66
n
66
LYS
66
B
PRO
67
n
67
PRO
67
B
PRO
68
n
68
PRO
68
B
HIS
69
n
69
HIS
69
B
VAL
70
n
70
VAL
70
B
LYS
71
n
71
LYS
71
B
PHE
72
n
72
PHE
72
B
LEU
73
n
73
LEU
73
B
SER
74
n
74
SER
74
B
GLU
75
n
75
GLU
75
B
MET
76
n
76
MET
76
B
PHE
77
n
77
PHE
77
B
HIS
78
n
78
HIS
78
B
PRO
79
n
79
PRO
79
B
ASN
80
n
80
ASN
80
B
VAL
81
n
81
VAL
81
B
TYR
82
n
82
TYR
82
B
ALA
83
n
83
ALA
83
B
ASN
84
n
84
ASN
84
B
GLY
85
n
85
GLY
85
B
GLU
86
n
86
GLU
86
B
ILE
87
n
87
ILE
87
B
CYS
88
n
88
CYS
88
B
LEU
89
n
89
LEU
89
B
ASP
90
n
90
ASP
90
B
ILE
91
n
91
ILE
91
B
LEU
92
n
92
LEU
92
B
GLN
93
n
93
GLN
93
B
ASN
94
n
94
ASN
94
B
ARG
95
n
95
ARG
95
B
TRP
96
n
96
TRP
96
B
THR
97
n
97
THR
97
B
PRO
98
n
98
PRO
98
B
THR
99
n
99
THR
99
B
TYR
100
n
100
TYR
100
B
ASP
101
n
101
ASP
101
B
VAL
102
n
102
VAL
102
B
ALA
103
n
103
ALA
103
B
SER
104
n
104
SER
104
B
ILE
105
n
105
ILE
105
B
LEU
106
n
106
LEU
106
B
THR
107
n
107
THR
107
B
SER
108
n
108
SER
108
B
ILE
109
n
109
ILE
109
B
GLN
110
n
110
GLN
110
B
SER
111
n
111
SER
111
B
LEU
112
n
112
LEU
112
B
PHE
113
n
113
PHE
113
B
ASN
114
n
114
ASN
114
B
ASP
115
n
115
ASP
115
B
PRO
116
n
116
PRO
116
B
ASN
117
n
117
ASN
117
B
PRO
118
n
118
PRO
118
B
ALA
119
n
119
ALA
119
B
SER
120
n
120
SER
120
B
PRO
121
n
121
PRO
121
B
ALA
122
n
122
ALA
122
B
ASN
123
n
123
ASN
123
B
VAL
124
n
124
VAL
124
B
GLU
125
n
125
GLU
125
B
ALA
126
n
126
ALA
126
B
ALA
127
n
127
ALA
127
B
THR
128
n
128
THR
128
B
LEU
129
n
129
LEU
129
B
PHE
130
n
130
PHE
130
B
LYS
131
n
131
LYS
131
B
ASP
132
n
132
ASP
132
B
HIS
133
n
133
HIS
133
B
LYS
134
n
134
LYS
134
B
SER
135
n
135
SER
135
B
GLN
136
n
136
GLN
136
B
TYR
137
n
137
TYR
137
B
VAL
138
n
138
VAL
138
B
LYS
139
n
139
LYS
139
B
ARG
140
n
140
ARG
140
B
VAL
141
n
141
VAL
141
B
LYS
142
n
142
LYS
142
B
GLU
143
n
143
GLU
143
B
THR
144
n
144
THR
144
B
VAL
145
n
145
VAL
145
B
GLU
146
n
146
GLU
146
B
LYS
147
n
147
LYS
147
B
SER
148
n
148
SER
148
B
TRP
149
n
149
TRP
149
B
GLU
150
n
150
GLU
150
B
ASP
151
n
151
ASP
151
B
ASP
152
n
152
ASP
152
B
MET
153
n
153
MET
153
B
ASP
154
n
154
ASP
154
B
n
155
155
B
n
156
156
B
n
157
157
B
n
158
158
B
n
159
159
B
n
160
160
B
n
161
161
B
n
162
162
B
n
163
163
B
n
164
164
B
n
165
165
B
n
166
166
B
n
167
167
B
n
168
168
B
n
169
169
B
n
1
1
C
SER
2
n
2
SER
2
C
THR
3
n
3
THR
3
C
PRO
4
n
4
PRO
4
C
ALA
5
n
5
ALA
5
C
ARG
6
n
6
ARG
6
C
ARG
7
n
7
ARG
7
C
ARG
8
n
8
ARG
8
C
LEU
9
n
9
LEU
9
C
MET
10
n
10
MET
10
C
ARG
11
n
11
ARG
11
C
ASP
12
n
12
ASP
12
C
PHE
13
n
13
PHE
13
C
LYS
14
n
14
LYS
14
C
ARG
15
n
15
ARG
15
C
MET
16
n
16
MET
16
C
LYS
17
n
17
LYS
17
C
GLU
18
n
18
GLU
18
C
ASP
19
n
19
ASP
19
C
ALA
20
n
20
ALA
20
C
PRO
21
n
21
PRO
21
C
PRO
22
n
22
PRO
22
C
GLY
23
n
23
GLY
23
C
VAL
24
n
24
VAL
24
C
SER
25
n
25
SER
25
C
ALA
26
n
26
ALA
26
C
SER
27
n
27
SER
27
C
PRO
28
n
28
PRO
28
C
LEU
29
n
29
LEU
29
C
PRO
30
n
30
PRO
30
C
ASP
31
n
31
ASP
31
C
ASN
32
n
32
ASN
32
C
VAL
33
n
33
VAL
33
C
MET
34
n
34
MET
34
C
VAL
35
n
35
VAL
35
C
TRP
36
n
36
TRP
36
C
ASN
37
n
37
ASN
37
C
ALA
38
n
38
ALA
38
C
MET
39
n
39
MET
39
C
ILE
40
n
40
ILE
40
C
ILE
41
n
41
ILE
41
C
GLY
42
n
42
GLY
42
C
PRO
43
n
43
PRO
43
C
ALA
44
n
44
ALA
44
C
ASP
45
n
45
ASP
45
C
THR
46
n
46
THR
46
C
PRO
47
n
47
PRO
47
C
TYR
48
n
48
TYR
48
C
GLU
49
n
49
GLU
49
C
ASP
50
n
50
ASP
50
C
GLY
51
n
51
GLY
51
C
THR
52
n
52
THR
52
C
PHE
53
n
53
PHE
53
C
ARG
54
n
54
ARG
54
C
LEU
55
n
55
LEU
55
C
LEU
56
n
56
LEU
56
C
LEU
57
n
57
LEU
57
C
GLU
58
n
58
GLU
58
C
PHE
59
n
59
PHE
59
C
ASP
60
n
60
ASP
60
C
GLU
61
n
61
GLU
61
C
GLU
62
n
62
GLU
62
C
TYR
63
n
63
TYR
63
C
PRO
64
n
64
PRO
64
C
ASN
65
n
65
ASN
65
C
LYS
66
n
66
LYS
66
C
PRO
67
n
67
PRO
67
C
PRO
68
n
68
PRO
68
C
HIS
69
n
69
HIS
69
C
VAL
70
n
70
VAL
70
C
LYS
71
n
71
LYS
71
C
PHE
72
n
72
PHE
72
C
LEU
73
n
73
LEU
73
C
SER
74
n
74
SER
74
C
GLU
75
n
75
GLU
75
C
MET
76
n
76
MET
76
C
PHE
77
n
77
PHE
77
C
HIS
78
n
78
HIS
78
C
PRO
79
n
79
PRO
79
C
ASN
80
n
80
ASN
80
C
VAL
81
n
81
VAL
81
C
TYR
82
n
82
TYR
82
C
ALA
83
n
83
ALA
83
C
ASN
84
n
84
ASN
84
C
GLY
85
n
85
GLY
85
C
GLU
86
n
86
GLU
86
C
ILE
87
n
87
ILE
87
C
CYS
88
n
88
CYS
88
C
LEU
89
n
89
LEU
89
C
ASP
90
n
90
ASP
90
C
ILE
91
n
91
ILE
91
C
LEU
92
n
92
LEU
92
C
GLN
93
n
93
GLN
93
C
ASN
94
n
94
ASN
94
C
ARG
95
n
95
ARG
95
C
TRP
96
n
96
TRP
96
C
THR
97
n
97
THR
97
C
PRO
98
n
98
PRO
98
C
THR
99
n
99
THR
99
C
TYR
100
n
100
TYR
100
C
ASP
101
n
101
ASP
101
C
VAL
102
n
102
VAL
102
C
ALA
103
n
103
ALA
103
C
SER
104
n
104
SER
104
C
ILE
105
n
105
ILE
105
C
LEU
106
n
106
LEU
106
C
THR
107
n
107
THR
107
C
SER
108
n
108
SER
108
C
ILE
109
n
109
ILE
109
C
GLN
110
n
110
GLN
110
C
SER
111
n
111
SER
111
C
LEU
112
n
112
LEU
112
C
PHE
113
n
113
PHE
113
C
ASN
114
n
114
ASN
114
C
ASP
115
n
115
ASP
115
C
PRO
116
n
116
PRO
116
C
ASN
117
n
117
ASN
117
C
PRO
118
n
118
PRO
118
C
ALA
119
n
119
ALA
119
C
SER
120
n
120
SER
120
C
PRO
121
n
121
PRO
121
C
ALA
122
n
122
ALA
122
C
ASN
123
n
123
ASN
123
C
VAL
124
n
124
VAL
124
C
GLU
125
n
125
GLU
125
C
ALA
126
n
126
ALA
126
C
ALA
127
n
127
ALA
127
C
THR
128
n
128
THR
128
C
LEU
129
n
129
LEU
129
C
PHE
130
n
130
PHE
130
C
LYS
131
n
131
LYS
131
C
ASP
132
n
132
ASP
132
C
HIS
133
n
133
HIS
133
C
LYS
134
n
134
LYS
134
C
SER
135
n
135
SER
135
C
GLN
136
n
136
GLN
136
C
TYR
137
n
137
TYR
137
C
VAL
138
n
138
VAL
138
C
LYS
139
n
139
LYS
139
C
ARG
140
n
140
ARG
140
C
VAL
141
n
141
VAL
141
C
LYS
142
n
142
LYS
142
C
GLU
143
n
143
GLU
143
C
THR
144
n
144
THR
144
C
VAL
145
n
145
VAL
145
C
GLU
146
n
146
GLU
146
C
LYS
147
n
147
LYS
147
C
SER
148
n
148
SER
148
C
TRP
149
n
149
TRP
149
C
GLU
150
n
150
GLU
150
C
ASP
151
n
151
ASP
151
C
ASP
152
n
152
ASP
152
C
MET
153
n
153
MET
153
C
ASP
154
n
154
ASP
154
C
n
155
155
C
n
156
156
C
n
157
157
C
n
158
158
C
n
159
159
C
n
160
160
C
n
161
161
C
n
162
162
C
n
163
163
C
n
164
164
C
n
165
165
C
n
166
166
C
n
167
167
C
n
168
168
C
n
169
169
C
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
HIS
69
A
O
HIS
69
A
N
GLU
58
A
N
GLU
58
A
O
PHE
53
A
O
PHE
53
A
N
ILE
40
A
N
ILE
40
A
O
ASN
32
A
O
ASN
32
A
N
LEU
29
A
N
LEU
29
B
O
HIS
69
B
O
HIS
69
B
N
GLU
58
B
N
GLU
58
B
O
PHE
53
B
O
PHE
53
B
N
ILE
40
B
N
ILE
40
B
O
ASN
32
B
O
ASN
32
B
N
LEU
29
B
N
LEU
29
C
O
HIS
69
C
O
HIS
69
C
N
GLU
58
C
N
GLU
58
C
O
PHE
53
C
O
PHE
53
C
N
ILE
40
C
N
ILE
40
C
O
ASN
32
C
O
ASN
32
C
N
LEU
29
C
N
LEU
29
1
A
CG
LYS
14
A
CG
LYS
14
0
Y
1
A
CD
LYS
14
A
CD
LYS
14
0
Y
1
A
CE
LYS
14
A
CE
LYS
14
0
Y
1
A
NZ
LYS
14
A
NZ
LYS
14
0
Y
1
A
CD
LYS
131
A
CD
LYS
131
0
Y
1
A
CE
LYS
131
A
CE
LYS
131
0
Y
1
A
NZ
LYS
131
A
NZ
LYS
131
0
Y
1
B
NZ
LYS
131
B
NZ
LYS
131
0
Y
1
C
CE
LYS
131
C
CE
LYS
131
0
Y
1
C
NZ
LYS
131
C
NZ
LYS
131
0
Y
1
A
MET
1
A
MET
1
1
Y
1
A
ASP
155
A
ASP
155
1
Y
1
A
ASP
156
A
ASP
156
1
Y
1
A
ASP
157
A
ASP
157
1
Y
1
A
ASP
158
A
ASP
158
1
Y
1
A
ASP
159
A
ASP
159
1
Y
1
A
ASP
160
A
ASP
160
1
Y
1
A
ASP
161
A
ASP
161
1
Y
1
A
ASP
162
A
ASP
162
1
Y
1
A
ASP
163
A
ASP
163
1
Y
1
A
ASP
164
A
ASP
164
1
Y
1
A
ASP
165
A
ASP
165
1
Y
1
A
ASP
166
A
ASP
166
1
Y
1
A
GLU
167
A
GLU
167
1
Y
1
A
ALA
168
A
ALA
168
1
Y
1
A
ASP
169
A
ASP
169
1
Y
1
B
MET
1
B
MET
1
1
Y
1
B
ASP
155
B
ASP
155
1
Y
1
B
ASP
156
B
ASP
156
1
Y
1
B
ASP
157
B
ASP
157
1
Y
1
B
ASP
158
B
ASP
158
1
Y
1
B
ASP
159
B
ASP
159
1
Y
1
B
ASP
160
B
ASP
160
1
Y
1
B
ASP
161
B
ASP
161
1
Y
1
B
ASP
162
B
ASP
162
1
Y
1
B
ASP
163
B
ASP
163
1
Y
1
B
ASP
164
B
ASP
164
1
Y
1
B
ASP
165
B
ASP
165
1
Y
1
B
ASP
166
B
ASP
166
1
Y
1
B
GLU
167
B
GLU
167
1
Y
1
B
ALA
168
B
ALA
168
1
Y
1
B
ASP
169
B
ASP
169
1
Y
1
C
MET
1
C
MET
1
1
Y
1
C
ASP
155
C
ASP
155
1
Y
1
C
ASP
156
C
ASP
156
1
Y
1
C
ASP
157
C
ASP
157
1
Y
1
C
ASP
158
C
ASP
158
1
Y
1
C
ASP
159
C
ASP
159
1
Y
1
C
ASP
160
C
ASP
160
1
Y
1
C
ASP
161
C
ASP
161
1
Y
1
C
ASP
162
C
ASP
162
1
Y
1
C
ASP
163
C
ASP
163
1
Y
1
C
ASP
164
C
ASP
164
1
Y
1
C
ASP
165
C
ASP
165
1
Y
1
C
ASP
166
C
ASP
166
1
Y
1
C
GLU
167
C
GLU
167
1
Y
1
C
ALA
168
C
ALA
168
1
Y
1
C
ASP
169
C
ASP
169
1
Y
1
A
GLU
18
-97.00
-68.17
1
A
ASP
19
-98.81
53.09
1
A
ALA
44
-21.15
-103.13
1
A
ASP
45
-91.99
49.80
1
A
GLU
49
-32.04
119.05
1
A
TYR
82
-69.56
-177.77
1
A
GLN
93
-115.02
-121.71
1
A
PRO
98
-58.16
-9.59
1
A
ASP
115
-170.14
70.05
1
A
PRO
116
-72.15
38.52
1
A
ASN
117
-112.85
55.84
1
A
HIS
133
-116.16
69.02
1
B
GLU
18
-94.90
-70.74
1
B
ASP
19
-99.33
52.11
1
B
ASN
32
-161.86
100.80
1
B
ALA
44
-21.74
-96.87
1
B
ASP
45
-100.55
56.49
1
B
GLU
49
-33.19
125.61
1
B
GLN
93
-107.87
-112.71
1
B
ASP
115
-152.35
78.60
1
C
GLU
18
-96.15
-68.25
1
C
ASP
19
-97.68
52.59
1
C
ASN
32
-162.81
96.89
1
C
PRO
43
-48.77
163.22
1
C
ALA
44
-34.40
-97.73
1
C
ASP
45
-94.71
52.23
1
C
GLU
49
-35.38
121.31
1
C
GLN
93
-114.99
-116.45
1
C
PRO
98
-59.77
-2.82
1
C
ALA
119
-56.73
-78.82
PARHCSDX.PRO
TOPHCSDX.PRO
TIP3P.PARAMETER
TIP3P.TOPOLOGY
39.1
BULK SOLVENT MODEL USED
0.2460000
0.007
0.2130000
0.2130000
2.60
20.0
1311
26010
5.0
91.3
RANDOM
10000000.0
0.001
1
GROUP
THROUGHOUT
0.0
SIR AND MOL REP TO PERFORM THREE-FOLD AVERAGING OF SIR MAP
PDB ENTRY 1AAK
0.39
0.32
20.0
0.48
0.40
2.60
20.0
103
3802
0
0
3699
0.008
1.4
24.4
1.36
0.3790000
0.027
0.3450000
2.76
202
3506
6
5.4
78.9
39.5
2.6
20.0
1AYZ
26012
0.
1
12.9
3.0
91.3
2.6
2.64
3.6
66.9
phasing
AMoRE
phasing
MLPHARE
refinement
X-PLOR
3.843
data reduction
DENZO
data scaling
SCALEPACK
CRYSTAL STRUCTURE OF THE SACCHAROMYCES CEREVISIAE UBIQUITIN-CONJUGATING ENZYME RAD6 (UBC2) AT 2.6A RESOLUTION
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
A
PRO
4
A
PRO
4
HELX_P
A
GLU
18
A
GLU
18
1
1
15
A
ASP
90
A
ASP
90
HELX_P
A
LEU
92
A
LEU
92
5
2
3
A
VAL
102
A
VAL
102
HELX_P
A
ASN
114
A
ASN
114
1
3
13
A
VAL
124
A
VAL
124
HELX_P
A
ASP
132
A
ASP
132
1
4
9
A
LYS
134
A
LYS
134
HELX_P
A
ASP
152
A
ASP
152
1
5
19
B
PRO
4
B
PRO
4
HELX_P
B
GLU
18
B
GLU
18
1
6
15
B
ASP
90
B
ASP
90
HELX_P
B
LEU
92
B
LEU
92
5
7
3
B
VAL
102
B
VAL
102
HELX_P
B
ASN
114
B
ASN
114
1
8
13
B
VAL
124
B
VAL
124
HELX_P
B
ASP
132
B
ASP
132
1
9
9
B
LYS
134
B
LYS
134
HELX_P
B
ASP
152
B
ASP
152
1
10
19
C
PRO
4
C
PRO
4
HELX_P
C
GLU
18
C
GLU
18
1
11
15
C
ASP
90
C
ASP
90
HELX_P
C
LEU
92
C
LEU
92
5
12
3
C
VAL
102
C
VAL
102
HELX_P
C
PHE
113
C
PHE
113
1
13
12
C
VAL
124
C
VAL
124
HELX_P
C
ASP
132
C
ASP
132
1
14
9
C
LYS
134
C
LYS
134
HELX_P
C
ASP
152
C
ASP
152
1
15
19
UBIQUITIN CONJUGATION
UBIQUITIN CONJUGATION, UBIQUITIN-CONJUGATING ENZYME
A
TYR
63
A
TYR
63
1
A
PRO
64
A
PRO
64
0.06
B
TYR
63
B
TYR
63
1
B
PRO
64
B
PRO
64
0.29
C
TYR
63
C
TYR
63
1
C
PRO
64
C
PRO
64
-0.10
UBC2_YEAST
UNP
1
1
P06104
MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN
VYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDDMDDMDDDD
DDDDDDDDDEAD
1
172
1AYZ
1
169
P06104
A
1
1
169
1
172
1AYZ
1
169
P06104
B
1
1
169
1
172
1AYZ
1
169
P06104
C
1
1
169
1
ASP
deletion
1AYZ
A
P06104
UNP
151
1
ASP
deletion
1AYZ
A
P06104
UNP
152
1
MET
deletion
1AYZ
A
P06104
UNP
153
2
ASP
deletion
1AYZ
B
P06104
UNP
151
2
ASP
deletion
1AYZ
B
P06104
UNP
152
2
MET
deletion
1AYZ
B
P06104
UNP
153
3
ASP
deletion
1AYZ
C
P06104
UNP
151
3
ASP
deletion
1AYZ
C
P06104
UNP
152
3
MET
deletion
1AYZ
C
P06104
UNP
153
4
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
HIS
69
A
HIS
69
A
PHE
72
A
PHE
72
A
THR
52
A
THR
52
A
GLU
58
A
GLU
58
A
ASN
32
A
ASN
32
A
ILE
41
A
ILE
41
A
VAL
24
A
VAL
24
A
LEU
29
A
LEU
29
B
HIS
69
B
HIS
69
B
PHE
72
B
PHE
72
B
THR
52
B
THR
52
B
GLU
58
B
GLU
58
B
ASN
32
B
ASN
32
B
ILE
41
B
ILE
41
B
VAL
24
B
VAL
24
B
LEU
29
B
LEU
29
C
HIS
69
C
HIS
69
C
PHE
72
C
PHE
72
C
THR
52
C
THR
52
C
GLU
58
C
GLU
58
C
ASN
32
C
ASN
32
C
ILE
41
C
ILE
41
C
VAL
24
C
VAL
24
C
LEU
29
C
LEU
29
ACCEPTOR RESIDUE FOR ACTIVATED C-TERMINUS OF UBIQUITIN.
Unknown
1
A
CYS
88
A
CYS
88
1
1_555
23
I 2 2 2