0.019957
0.000000
0.000000
0.000000
0.012958
0.000000
0.000000
0.000000
0.028185
0.00000
0.00000
0.00000
Robinson, H.
Gao, Y.-G.
Mccrary, B.S.
Edmondson, S.P.
Shriver, J.W.
Wang, A.H.-J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
50.108
77.173
35.480
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
P
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
N
C
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
Y
90
N
C
N
91
N
N
Y
92
N
N
Y
93
N
C
Y
94
N
N
Y
95
N
C
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
O
N
111
N
P
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
C
N
116
R
C
N
117
N
O
N
118
S
C
N
119
N
O
N
120
N
C
N
121
R
C
N
122
N
N
N
123
N
C
N
124
N
O
N
125
N
N
N
126
N
C
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
P
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
C
N
150
R
C
N
151
N
O
N
152
S
C
N
153
N
O
N
154
N
C
N
155
R
C
Y
156
N
N
Y
157
N
C
Y
158
N
N
Y
159
N
C
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
C
N
164
N
N
N
165
N
N
Y
166
N
C
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
P
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
C
N
187
R
C
N
188
N
O
N
189
S
C
N
190
N
O
N
191
N
C
N
192
R
C
N
193
N
N
N
194
N
C
N
195
N
O
N
196
N
N
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
O
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
N
N
250
S
C
N
251
N
C
N
252
N
O
N
253
S
C
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
N
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
N
323
N
C
N
324
N
S
N
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
N
C
N
366
N
C
N
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
N
383
N
O
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
R
C
N
397
N
O
N
398
N
C
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
N
N
410
S
C
N
411
N
C
N
412
N
O
N
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
N
Y
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
N
N
437
S
C
N
438
N
C
N
439
N
O
N
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
N
447
N
O
N
448
N
O
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
N
N
461
S
C
N
462
N
C
N
463
N
O
N
464
N
C
N
465
N
C
N
466
N
C
N
467
N
O
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
Y
93
N
sing
Y
94
N
sing
Y
95
N
doub
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
doub
N
102
N
sing
N
103
N
sing
Y
104
N
sing
Y
105
N
doub
N
106
N
sing
Y
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
Y
166
N
sing
Y
167
N
sing
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
Y
172
N
doub
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
Y
344
N
doub
Y
345
N
sing
Y
346
N
sing
N
347
N
sing
Y
348
N
doub
N
349
N
sing
Y
350
N
doub
N
351
N
sing
Y
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
Y
413
N
doub
Y
414
N
sing
Y
415
N
sing
N
416
N
sing
Y
417
N
doub
Y
418
N
sing
Y
419
N
sing
N
420
N
sing
Y
421
N
sing
Y
422
N
doub
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
doub
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
Y
441
N
doub
Y
442
N
sing
Y
443
N
sing
N
444
N
sing
Y
445
N
doub
N
446
N
sing
Y
447
N
doub
N
448
N
sing
Y
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
doub
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
UK
Nature
NATUAS
0006
0028-0836
392
202
205
10.1038/32455
9515968
The hyperthermophile chromosomal protein Sac7d sharply kinks DNA.
1998
10.2210/pdb1azp/pdb
pdb_00001azp
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
123
1
IMAGE PLATE
1997-07-15
RIGAKU
GRAPHITE
M
x-ray
1
1.540598
1.0
1.540598
ROTATING ANODE
RIGAKU RU200
2427.605
DNA (5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3')
2
syn
polymer
7626.914
PROTEIN (HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D)
1
man
polymer
18.015
water
132
nat
water
7 KD HYPERTHERMOPHILE DNA-BINDING PROTEIN
no
no
(DG)(DC)(DG)(DA)(DT)(DC)(DG)(DC)
GCGATCGC
B,C
polydeoxyribonucleotide
no
no
MVKVKFKYKGEEKEVDTSKIKKVWRVGKMVSFTYDDNGKTGRGAVSEKDAPKELLDMLARAEREKK
MVKVKFKYKGEEKEVDTSKIKKVWRVGKMVSFTYDDNGKTGRGAVSEKDAPKELLDMLARAEREKK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Sulfolobus
Escherichia
sample
2285
Sulfolobus acidocaldarius
562
Escherichia coli
1
2.81
56
VAPOR DIFFUSION, HANGING DROP
6.5
pH 6.5, VAPOR DIFFUSION, HANGING DROP
MPD
1
TRIS BUFFER
1
MPD
2
-3.237
1
19
B
101
C
116
0.562
B_DG101:DC116_C
1
2.006
-0.318
-0.125
-0.178
15.947
1
19
B
102
C
115
-0.632
B_DC102:DG115_C
2
-8.107
0.326
-0.257
-0.037
-23.139
1
19
B
103
C
114
0.995
B_DG103:DC114_C
3
-3.729
-0.316
-0.439
-0.034
-3.029
1
20
B
104
C
113
6.294
B_DA104:DT113_C
4
-7.700
-0.137
-0.051
-0.100
2.869
1
20
B
105
C
112
-0.943
B_DT105:DA112_C
5
-10.596
-0.159
0.004
-0.198
2.325
1
19
B
106
C
111
-3.886
B_DC106:DG111_C
6
-12.135
0.169
0.030
-0.143
2.128
1
19
B
107
C
110
-2.074
B_DG107:DC110_C
7
-5.248
-0.474
0.211
-0.189
5.981
1
19
B
108
C
109
3.165
B_DC108:DG109_C
8
-4.087
0.384
-0.065
-0.208
2.850
27.765
B
B
101
102
4.191
C
C
116
115
2.893
2.009
-0.607
0.004
BB_DG101DC102:DG115DC116_CC
1
1.478
-3.083
27.655
-0.416
1.578
2.726
64.157
B
B
102
103
73.727
C
C
115
114
5.299
61.301
-0.231
1.059
BB_DC102DG103:DC114DG115_CC
2
0.276
-0.332
19.922
-4.392
0.241
2.840
24.309
B
B
103
104
20.342
C
C
114
113
2.917
8.311
0.184
0.667
BB_DG103DA104:DT113DC114_CC
3
-5.808
14.216
22.122
-0.831
-2.125
3.039
26.052
B
B
104
105
8.811
C
C
113
112
3.116
3.954
-0.667
-0.539
BB_DA104DT105:DA112DT113_CC
4
-1.842
4.106
25.691
-2.221
1.001
3.368
37.817
B
B
105
106
2.687
C
C
112
111
3.398
1.738
-0.233
0.350
BB_DT105DC106:DG111DA112_CC
5
4.041
-6.248
37.569
0.308
0.899
3.392
34.792
B
B
106
107
4.545
C
C
111
110
3.295
2.713
1.101
0.660
BB_DC106DG107:DC110DG111_CC
6
1.981
-3.318
34.635
0.681
-1.532
3.308
31.811
B
B
107
108
-5.018
C
C
110
109
3.218
-2.742
0.857
-0.354
BB_DG107DC108:DG109DC110_CC
7
3.383
-6.190
31.519
-0.143
-0.943
chem_comp_atom
chem_comp_bond
database_2
software
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Refinement description
1
0
1999-01-13
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_software.name
Y
NDB
1997-11-19
REL
REL
HOH
water
HOH
117
3
HOH
HOH
117
B
HOH
132
3
HOH
HOH
132
B
HOH
133
3
HOH
HOH
133
B
HOH
134
3
HOH
HOH
134
B
HOH
138
3
HOH
HOH
138
B
HOH
143
3
HOH
HOH
143
B
HOH
148
3
HOH
HOH
148
B
HOH
152
3
HOH
HOH
152
B
HOH
153
3
HOH
HOH
153
B
HOH
154
3
HOH
HOH
154
B
HOH
158
3
HOH
HOH
158
B
HOH
159
3
HOH
HOH
159
B
HOH
161
3
HOH
HOH
161
B
HOH
162
3
HOH
HOH
162
B
HOH
163
3
HOH
HOH
163
B
HOH
164
3
HOH
HOH
164
B
HOH
165
3
HOH
HOH
165
B
HOH
168
3
HOH
HOH
168
B
HOH
169
3
HOH
HOH
169
B
HOH
171
3
HOH
HOH
171
B
HOH
173
3
HOH
HOH
173
B
HOH
178
3
HOH
HOH
178
B
HOH
192
3
HOH
HOH
192
B
HOH
199
3
HOH
HOH
199
B
HOH
202
3
HOH
HOH
202
B
HOH
204
3
HOH
HOH
204
B
HOH
211
3
HOH
HOH
211
B
HOH
214
3
HOH
HOH
214
B
HOH
224
3
HOH
HOH
224
B
HOH
228
3
HOH
HOH
228
B
HOH
231
3
HOH
HOH
231
B
HOH
235
3
HOH
HOH
235
B
HOH
240
3
HOH
HOH
240
B
HOH
245
3
HOH
HOH
245
B
HOH
118
3
HOH
HOH
118
C
HOH
119
3
HOH
HOH
119
C
HOH
128
3
HOH
HOH
128
C
HOH
136
3
HOH
HOH
136
C
HOH
137
3
HOH
HOH
137
C
HOH
140
3
HOH
HOH
140
C
HOH
141
3
HOH
HOH
141
C
HOH
142
3
HOH
HOH
142
C
HOH
149
3
HOH
HOH
149
C
HOH
151
3
HOH
HOH
151
C
HOH
167
3
HOH
HOH
167
C
HOH
175
3
HOH
HOH
175
C
HOH
177
3
HOH
HOH
177
C
HOH
180
3
HOH
HOH
180
C
HOH
181
3
HOH
HOH
181
C
HOH
186
3
HOH
HOH
186
C
HOH
191
3
HOH
HOH
191
C
HOH
194
3
HOH
HOH
194
C
HOH
197
3
HOH
HOH
197
C
HOH
207
3
HOH
HOH
207
C
HOH
212
3
HOH
HOH
212
C
HOH
217
3
HOH
HOH
217
C
HOH
218
3
HOH
HOH
218
C
HOH
223
3
HOH
HOH
223
C
HOH
230
3
HOH
HOH
230
C
HOH
237
3
HOH
HOH
237
C
HOH
239
3
HOH
HOH
239
C
HOH
120
3
HOH
HOH
120
A
HOH
121
3
HOH
HOH
121
A
HOH
122
3
HOH
HOH
122
A
HOH
123
3
HOH
HOH
123
A
HOH
124
3
HOH
HOH
124
A
HOH
125
3
HOH
HOH
125
A
HOH
126
3
HOH
HOH
126
A
HOH
127
3
HOH
HOH
127
A
HOH
129
3
HOH
HOH
129
A
HOH
130
3
HOH
HOH
130
A
HOH
131
3
HOH
HOH
131
A
HOH
135
3
HOH
HOH
135
A
HOH
139
3
HOH
HOH
139
A
HOH
144
3
HOH
HOH
144
A
HOH
145
3
HOH
HOH
145
A
HOH
146
3
HOH
HOH
146
A
HOH
147
3
HOH
HOH
147
A
HOH
150
3
HOH
HOH
150
A
HOH
155
3
HOH
HOH
155
A
HOH
156
3
HOH
HOH
156
A
HOH
157
3
HOH
HOH
157
A
HOH
160
3
HOH
HOH
160
A
HOH
166
3
HOH
HOH
166
A
HOH
170
3
HOH
HOH
170
A
HOH
172
3
HOH
HOH
172
A
HOH
174
3
HOH
HOH
174
A
HOH
176
3
HOH
HOH
176
A
HOH
179
3
HOH
HOH
179
A
HOH
182
3
HOH
HOH
182
A
HOH
183
3
HOH
HOH
183
A
HOH
184
3
HOH
HOH
184
A
HOH
185
3
HOH
HOH
185
A
HOH
187
3
HOH
HOH
187
A
HOH
188
3
HOH
HOH
188
A
HOH
189
3
HOH
HOH
189
A
HOH
190
3
HOH
HOH
190
A
HOH
193
3
HOH
HOH
193
A
HOH
195
3
HOH
HOH
195
A
HOH
196
3
HOH
HOH
196
A
HOH
198
3
HOH
HOH
198
A
HOH
200
3
HOH
HOH
200
A
HOH
201
3
HOH
HOH
201
A
HOH
203
3
HOH
HOH
203
A
HOH
205
3
HOH
HOH
205
A
HOH
206
3
HOH
HOH
206
A
HOH
208
3
HOH
HOH
208
A
HOH
209
3
HOH
HOH
209
A
HOH
210
3
HOH
HOH
210
A
HOH
213
3
HOH
HOH
213
A
HOH
215
3
HOH
HOH
215
A
HOH
216
3
HOH
HOH
216
A
HOH
219
3
HOH
HOH
219
A
HOH
220
3
HOH
HOH
220
A
HOH
221
3
HOH
HOH
221
A
HOH
222
3
HOH
HOH
222
A
HOH
225
3
HOH
HOH
225
A
HOH
226
3
HOH
HOH
226
A
HOH
227
3
HOH
HOH
227
A
HOH
229
3
HOH
HOH
229
A
HOH
232
3
HOH
HOH
232
A
HOH
233
3
HOH
HOH
233
A
HOH
234
3
HOH
HOH
234
A
HOH
236
3
HOH
HOH
236
A
HOH
238
3
HOH
HOH
238
A
HOH
241
3
HOH
HOH
241
A
HOH
242
3
HOH
HOH
242
A
HOH
243
3
HOH
HOH
243
A
HOH
244
3
HOH
HOH
244
A
HOH
246
3
HOH
HOH
246
A
HOH
247
3
HOH
HOH
247
A
HOH
248
3
HOH
HOH
248
A
G
101
n
1
DG
101
B
C
102
n
2
DC
102
B
G
103
n
3
DG
103
B
A
104
n
4
DA
104
B
T
105
n
5
DT
105
B
C
106
n
6
DC
106
B
G
107
n
7
DG
107
B
C
108
n
8
DC
108
B
G
109
n
1
DG
109
C
C
110
n
2
DC
110
C
G
111
n
3
DG
111
C
A
112
n
4
DA
112
C
T
113
n
5
DT
113
C
C
114
n
6
DC
114
C
G
115
n
7
DG
115
C
C
116
n
8
DC
116
C
MET
1
n
1
MET
1
A
VAL
2
n
2
VAL
2
A
LYS
3
n
3
LYS
3
A
VAL
4
n
4
VAL
4
A
LYS
5
n
5
LYS
5
A
PHE
6
n
6
PHE
6
A
LYS
7
n
7
LYS
7
A
TYR
8
n
8
TYR
8
A
LYS
9
n
9
LYS
9
A
GLY
10
n
10
GLY
10
A
GLU
11
n
11
GLU
11
A
GLU
12
n
12
GLU
12
A
LYS
13
n
13
LYS
13
A
GLU
14
n
14
GLU
14
A
VAL
15
n
15
VAL
15
A
ASP
16
n
16
ASP
16
A
THR
17
n
17
THR
17
A
SER
18
n
18
SER
18
A
LYS
19
n
19
LYS
19
A
ILE
20
n
20
ILE
20
A
LYS
21
n
21
LYS
21
A
LYS
22
n
22
LYS
22
A
VAL
23
n
23
VAL
23
A
TRP
24
n
24
TRP
24
A
ARG
25
n
25
ARG
25
A
VAL
26
n
26
VAL
26
A
GLY
27
n
27
GLY
27
A
LYS
28
n
28
LYS
28
A
MET
29
n
29
MET
29
A
VAL
30
n
30
VAL
30
A
SER
31
n
31
SER
31
A
PHE
32
n
32
PHE
32
A
THR
33
n
33
THR
33
A
TYR
34
n
34
TYR
34
A
ASP
35
n
35
ASP
35
A
ASP
36
n
36
ASP
36
A
ASN
37
n
37
ASN
37
A
GLY
38
n
38
GLY
38
A
LYS
39
n
39
LYS
39
A
THR
40
n
40
THR
40
A
GLY
41
n
41
GLY
41
A
ARG
42
n
42
ARG
42
A
GLY
43
n
43
GLY
43
A
ALA
44
n
44
ALA
44
A
VAL
45
n
45
VAL
45
A
SER
46
n
46
SER
46
A
GLU
47
n
47
GLU
47
A
LYS
48
n
48
LYS
48
A
ASP
49
n
49
ASP
49
A
ALA
50
n
50
ALA
50
A
PRO
51
n
51
PRO
51
A
LYS
52
n
52
LYS
52
A
GLU
53
n
53
GLU
53
A
LEU
54
n
54
LEU
54
A
LEU
55
n
55
LEU
55
A
ASP
56
n
56
ASP
56
A
MET
57
n
57
MET
57
A
LEU
58
n
58
LEU
58
A
ALA
59
n
59
ALA
59
A
ARG
60
n
60
ARG
60
A
ALA
61
n
61
ALA
61
A
GLU
62
n
62
GLU
62
A
ARG
63
n
63
ARG
63
A
GLU
64
n
64
GLU
64
A
LYS
65
n
65
LYS
65
A
LYS
66
n
66
LYS
66
A
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
4
C
O
VAL
4
A
N
VAL
15
C
N
VAL
15
A
O
TRP
24
C
O
TRP
24
A
N
SER
31
C
N
SER
31
A
O
VAL
30
C
O
VAL
30
A
N
VAL
45
C
N
VAL
45
1
B
C
O2
H21
DC
DG
108
109
1.56
1
B
DG
103
0.054
SIDE CHAIN
1
B
DC
106
0.074
SIDE CHAIN
1
C
DG
111
0.053
SIDE CHAIN
1
C
DC
114
0.082
SIDE CHAIN
1
A
LYS
21
-96.86
-85.68
1
A
ASN
37
33.77
61.82
PARHCSDX.PRO
TOPHCSDX.PRO
PARAM11.WAT
TOPH19.PEP
PARAM_NDBX_HIGH.DNA
TOPH11.WAT
TOP_NDBX.DNA
0.2520000
0.009
0.2110000
0.2110000
1.6
6.0
729
14584
5.0
79.3
RANDOM
100000.00
0.001
1
A POSTERIORI
3.0
MIR
1.6
6.0
132
987
0
322
533
0.011
1.39
19.4
1.6
30.0
1AZP
18497
1.0
0.0700000
1
11.1
6.6
95.
0.3930000
1.60
1.65
1.5
3.7
95.2
phasing
PHASES
refinement
X-PLOR
3.843
data reduction
bioteX
data scaling
bioteX
HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH KINKED DNA DUPLEX
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
A
THR
17
C
THR
17
HELX_P
A
LYS
19
C
LYS
19
5
1
3
A
GLU
47
C
GLU
47
HELX_P
A
ASP
49
C
ASP
49
5
2
3
A
LYS
52
C
LYS
52
HELX_P
A
ARG
63
C
ARG
63
1
3
12
hydrog
WATSON-CRICK
B
DG
101
A
N1
DG
1
1_555
C
DC
116
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
101
A
N2
DG
1
1_555
C
DC
116
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
101
A
O6
DG
1
1_555
C
DC
116
B
N4
DC
8
1_555
hydrog
WATSON-CRICK
B
DC
102
A
N3
DC
2
1_555
C
DG
115
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
B
DC
102
A
N4
DC
2
1_555
C
DG
115
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
B
DC
102
A
O2
DC
2
1_555
C
DG
115
B
N2
DG
7
1_555
hydrog
WATSON-CRICK
B
DG
103
A
N1
DG
3
1_555
C
DC
114
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
103
A
N2
DG
3
1_555
C
DC
114
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
103
A
O6
DG
3
1_555
C
DC
114
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
B
DA
104
A
N1
DA
4
1_555
C
DT
113
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
B
DA
104
A
N6
DA
4
1_555
C
DT
113
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
B
DT
105
A
N3
DT
5
1_555
C
DA
112
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
B
DT
105
A
O4
DT
5
1_555
C
DA
112
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
B
DC
106
A
N3
DC
6
1_555
C
DG
111
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
106
A
N4
DC
6
1_555
C
DG
111
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
106
A
O2
DC
6
1_555
C
DG
111
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
B
DG
107
A
N1
DG
7
1_555
C
DC
110
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
107
A
N2
DG
7
1_555
C
DC
110
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
107
A
O6
DG
7
1_555
C
DC
110
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
B
DC
108
A
N3
DC
8
1_555
C
DG
109
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
108
A
N4
DC
8
1_555
C
DG
109
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
108
A
O2
DC
8
1_555
C
DG
109
B
N2
DG
1
1_555
DNA BINDING PROTEIN/DNA
COMPLEX (CHROMATIN PROTEIN-DNA), DNA-BINDING, ARCHEA KINKED-DNA, MINOR-GROOVE BINDING, INTERCALATION, DNA BINDING PROTEIN-DNA COMPLEX
DN71_SULAC
UNP
2
P13123
1AZP
PDB
1
1AZP
1
65
1AZP
2
66
P13123
A
1
2
66
101
108
1AZP
101
108
1AZP
B
2
1
8
109
116
1AZP
109
116
1AZP
C
2
1
8
2
3
anti-parallel
anti-parallel
anti-parallel
A
LYS
3
C
LYS
3
A
TYR
8
C
TYR
8
A
GLU
11
C
GLU
11
A
ASP
16
C
ASP
16
A
VAL
23
C
VAL
23
A
VAL
26
C
VAL
26
A
MET
29
C
MET
29
A
ASP
36
C
ASP
36
A
LYS
39
C
LYS
39
A
SER
46
C
SER
46
19
orthorhombic
P 21 21 21