0.019318 0.000000 0.000000 0.000000 0.012899 0.000000 0.000000 0.000000 0.027366 0.00000 0.00000 0.00000 Robinson, H. Gao, Y.-G. Mccrary, B.S. Edmondson, S.P. Shriver, J.W. Wang, A.H.-J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 51.765 77.528 36.542 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Nature NATUAS 0006 0028-0836 392 202 205 10.1038/32455 9515968 The hyperthermophile chromosomal protein Sac7d sharply kinks DNA. 1998 10.2210/pdb1azq/pdb pdb_00001azq 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 IMAGE PLATE 1997-04-15 RIGAKU GRAPHITE M x-ray 1 1.540598 1.0 1.540598 ROTATING ANODE RIGAKU RU200 2425.629 DNA (5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3') 2 syn polymer 7626.914 PROTEIN (HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D) 1 man polymer 18.015 water 68 nat water 7 KD HYPERTHERMOPHILE DNA-BINDING PROTEIN no no (DG)(DT)(DA)(DA)(DT)(DT)(DA)(DC) GTAATTAC B,C polydeoxyribonucleotide no no MVKVKFKYKGEEKEVDTSKIKKVWRVGKMVSFTYDDNGKTGRGAVSEKDAPKELLDMLARAEREKK MVKVKFKYKGEEKEVDTSKIKKVWRVGKMVSFTYDDNGKTGRGAVSEKDAPKELLDMLARAEREKK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Sulfolobus Escherichia sample 2285 Sulfolobus acidocaldarius 562 Escherichia coli 1 3.00 59.0 VAPOR DIFFUSION, HANGING DROP 6.5 pH 6.5, VAPOR DIFFUSION, HANGING DROP PEG 400 1 TRIS BUFFER 1 PEG 400 2 1.576 1 19 B 101 C 116 6.789 B_DG101:DC116_C 1 -5.548 -0.920 0.045 -0.056 9.955 1 20 B 102 C 115 2.330 B_DT102:DA115_C 2 -0.947 -0.083 -0.100 -0.218 20.324 1 20 B 103 C 114 3.519 B_DA103:DT114_C 3 -8.212 0.190 0.440 -0.165 -20.975 1 20 B 104 C 113 -3.264 B_DA104:DT113_C 4 12.403 0.246 -0.367 0.035 -5.454 1 20 B 105 C 112 2.233 B_DT105:DA112_C 5 -4.813 -0.022 0.060 -0.174 1.426 1 20 B 106 C 111 -0.276 B_DT106:DA111_C 6 -15.402 0.040 -0.086 -0.289 9.859 1 20 B 107 C 110 -6.079 B_DA107:DT110_C 7 -9.310 0.180 -0.093 -0.375 6.197 1 19 B 108 C 109 -0.029 B_DC108:DG109_C 8 -6.028 0.470 -0.141 -0.459 3.179 31.862 B B 101 102 -4.238 C C 116 115 3.174 -2.325 -0.394 -0.166 BB_DG101DT102:DA115DC116_CC 1 -0.154 0.280 31.779 0.109 0.691 3.189 29.488 B B 102 103 7.360 C C 115 114 3.225 3.735 -0.021 -0.061 BB_DT102DA103:DT114DA115_CC 2 -1.622 3.195 29.212 -0.905 -0.298 3.378 64.091 B B 103 104 69.977 C C 114 113 5.955 59.771 -0.212 1.136 BB_DA103DA104:DT113DT114_CC 3 2.800 -3.278 24.109 -4.725 0.471 2.984 19.245 B B 104 105 17.153 C C 113 112 3.167 5.625 0.079 0.037 BB_DA104DT105:DA112DT113_CC 4 -3.177 9.688 18.138 -2.634 -1.787 3.096 30.260 B B 105 106 12.434 C C 112 111 3.226 6.437 -0.262 -0.144 BB_DT105DT106:DA111DA112_CC 5 2.357 -4.553 29.491 -1.551 0.969 3.056 44.810 B B 106 107 -4.923 C C 111 110 3.170 -3.749 0.008 1.295 BB_DT106DA107:DT110DA111_CC 6 0.899 -1.180 44.652 2.023 0.068 3.578 29.363 B B 107 108 -3.653 C C 110 109 3.526 -1.849 0.603 -0.397 BB_DA107DC108:DG109DT110_CC 7 2.184 -4.316 29.226 -0.351 -0.679 database_2 pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Database references Refinement description 1 0 1999-01-13 1 1 2008-05-22 1 2 2011-07-13 1 3 2023-08-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession Y NDB 1997-11-20 REL REL HOH water 1AZP PDB ENTRY 1AZP PDB experimental model HOH 117 3 HOH HOH 117 B HOH 138 3 HOH HOH 138 B HOH 140 3 HOH HOH 140 B HOH 144 3 HOH HOH 144 B HOH 150 3 HOH HOH 150 B HOH 152 3 HOH HOH 152 B HOH 159 3 HOH HOH 159 B HOH 162 3 HOH HOH 162 B HOH 163 3 HOH HOH 163 B HOH 168 3 HOH HOH 168 B HOH 169 3 HOH HOH 169 B HOH 171 3 HOH HOH 171 B HOH 173 3 HOH HOH 173 B HOH 174 3 HOH HOH 174 B HOH 181 3 HOH HOH 181 B HOH 183 3 HOH HOH 183 B HOH 119 3 HOH HOH 119 C HOH 120 3 HOH HOH 120 C HOH 126 3 HOH HOH 126 C HOH 127 3 HOH HOH 127 C HOH 135 3 HOH HOH 135 C HOH 137 3 HOH HOH 137 C HOH 143 3 HOH HOH 143 C HOH 145 3 HOH HOH 145 C HOH 147 3 HOH HOH 147 C HOH 149 3 HOH HOH 149 C HOH 153 3 HOH HOH 153 C HOH 154 3 HOH HOH 154 C HOH 155 3 HOH HOH 155 C HOH 160 3 HOH HOH 160 C HOH 161 3 HOH HOH 161 C HOH 164 3 HOH HOH 164 C HOH 170 3 HOH HOH 170 C HOH 172 3 HOH HOH 172 C HOH 179 3 HOH HOH 179 C HOH 180 3 HOH HOH 180 C HOH 182 3 HOH HOH 182 C HOH 118 3 HOH HOH 118 A HOH 121 3 HOH HOH 121 A HOH 122 3 HOH HOH 122 A HOH 123 3 HOH HOH 123 A HOH 124 3 HOH HOH 124 A HOH 125 3 HOH HOH 125 A HOH 128 3 HOH HOH 128 A HOH 129 3 HOH HOH 129 A HOH 130 3 HOH HOH 130 A HOH 131 3 HOH HOH 131 A HOH 132 3 HOH HOH 132 A HOH 133 3 HOH HOH 133 A HOH 134 3 HOH HOH 134 A HOH 136 3 HOH HOH 136 A HOH 139 3 HOH HOH 139 A HOH 141 3 HOH HOH 141 A HOH 142 3 HOH HOH 142 A HOH 146 3 HOH HOH 146 A HOH 148 3 HOH HOH 148 A HOH 151 3 HOH HOH 151 A HOH 156 3 HOH HOH 156 A HOH 157 3 HOH HOH 157 A HOH 158 3 HOH HOH 158 A HOH 165 3 HOH HOH 165 A HOH 166 3 HOH HOH 166 A HOH 167 3 HOH HOH 167 A HOH 175 3 HOH HOH 175 A HOH 176 3 HOH HOH 176 A HOH 177 3 HOH HOH 177 A HOH 178 3 HOH HOH 178 A HOH 184 3 HOH HOH 184 A G 101 n 1 DG 101 B T 102 n 2 DT 102 B A 103 n 3 DA 103 B A 104 n 4 DA 104 B T 105 n 5 DT 105 B T 106 n 6 DT 106 B A 107 n 7 DA 107 B C 108 n 8 DC 108 B G 109 n 1 DG 109 C T 110 n 2 DT 110 C A 111 n 3 DA 111 C A 112 n 4 DA 112 C T 113 n 5 DT 113 C T 114 n 6 DT 114 C A 115 n 7 DA 115 C C 116 n 8 DC 116 C MET 1 n 1 MET 1 A VAL 2 n 2 VAL 2 A LYS 3 n 3 LYS 3 A VAL 4 n 4 VAL 4 A LYS 5 n 5 LYS 5 A PHE 6 n 6 PHE 6 A LYS 7 n 7 LYS 7 A TYR 8 n 8 TYR 8 A LYS 9 n 9 LYS 9 A GLY 10 n 10 GLY 10 A GLU 11 n 11 GLU 11 A GLU 12 n 12 GLU 12 A LYS 13 n 13 LYS 13 A GLU 14 n 14 GLU 14 A VAL 15 n 15 VAL 15 A ASP 16 n 16 ASP 16 A THR 17 n 17 THR 17 A SER 18 n 18 SER 18 A LYS 19 n 19 LYS 19 A ILE 20 n 20 ILE 20 A LYS 21 n 21 LYS 21 A LYS 22 n 22 LYS 22 A VAL 23 n 23 VAL 23 A TRP 24 n 24 TRP 24 A ARG 25 n 25 ARG 25 A VAL 26 n 26 VAL 26 A GLY 27 n 27 GLY 27 A LYS 28 n 28 LYS 28 A MET 29 n 29 MET 29 A VAL 30 n 30 VAL 30 A SER 31 n 31 SER 31 A PHE 32 n 32 PHE 32 A THR 33 n 33 THR 33 A TYR 34 n 34 TYR 34 A ASP 35 n 35 ASP 35 A ASP 36 n 36 ASP 36 A ASN 37 n 37 ASN 37 A GLY 38 n 38 GLY 38 A LYS 39 n 39 LYS 39 A THR 40 n 40 THR 40 A GLY 41 n 41 GLY 41 A ARG 42 n 42 ARG 42 A GLY 43 n 43 GLY 43 A ALA 44 n 44 ALA 44 A VAL 45 n 45 VAL 45 A SER 46 n 46 SER 46 A GLU 47 n 47 GLU 47 A LYS 48 n 48 LYS 48 A ASP 49 n 49 ASP 49 A ALA 50 n 50 ALA 50 A PRO 51 n 51 PRO 51 A LYS 52 n 52 LYS 52 A GLU 53 n 53 GLU 53 A LEU 54 n 54 LEU 54 A LEU 55 n 55 LEU 55 A ASP 56 n 56 ASP 56 A MET 57 n 57 MET 57 A LEU 58 n 58 LEU 58 A ALA 59 n 59 ALA 59 A ARG 60 n 60 ARG 60 A ALA 61 n 61 ALA 61 A GLU 62 n 62 GLU 62 A ARG 63 n 63 ARG 63 A GLU 64 n 64 GLU 64 A LYS 65 n 65 LYS 65 A LYS 66 n 66 LYS 66 A author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 4 C O VAL 4 A N VAL 15 C N VAL 15 A O LYS 39 C O LYS 39 A N ASP 36 C N ASP 36 A O MET 29 C O MET 29 A N VAL 26 C N VAL 26 1 A A HZ3 HG1 LYS THR 21 40 1.30 1 B C H61 O4 DA DT 107 110 1.45 1 B C O2 H22 DC DG 108 109 1.54 1 B DA 104 0.066 SIDE CHAIN 1 C DT 113 0.069 SIDE CHAIN 1 A ASP 36 -93.64 48.51 1 A ASN 37 62.84 69.31 PARHCSDX.PRO TOPHCSDX.PRO PARAM11.WAT TOPH19.PEP PARAM_NDBX_HIGH.DNA TOPH11.WA TOP_NDBX.DNA 0.2380000 0.012 0.1860000 0.1860000 1.94 6.0 405 8105 5.0 69.4 RANDOM 100000.00 0.1 1 A POSTERIORI 3.0 MOLECULAR REPLACEMENT PDB ENTRY 1AZP 1.94 6.0 68 923 0 322 533 0.011 1.47 38.8 1.94 30.0 1AZQ 10085 1.0 0.0570000 1 14.2 5.2 87.9 0.2800000 1.94 2.0 1.8 2.5 65.8 model building X-PLOR refinement X-PLOR 3.843 data reduction R-AXIS data scaling R-AXIS phasing X-PLOR HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH KINKED DNA DUPLEX 1 N N 1 N N 2 N N 3 N N 3 N N 3 N N A THR 17 C THR 17 HELX_P A LYS 19 C LYS 19 5 1 3 A GLU 47 C GLU 47 HELX_P A ASP 49 C ASP 49 5 2 3 A LYS 52 C LYS 52 HELX_P A ARG 63 C ARG 63 1 3 12 hydrog WATSON-CRICK B DG 101 A N1 DG 1 1_555 C DC 116 B N3 DC 8 1_555 hydrog WATSON-CRICK B DG 101 A N2 DG 1 1_555 C DC 116 B O2 DC 8 1_555 hydrog WATSON-CRICK B DG 101 A O6 DG 1 1_555 C DC 116 B N4 DC 8 1_555 hydrog WATSON-CRICK B DT 102 A N3 DT 2 1_555 C DA 115 B N1 DA 7 1_555 hydrog WATSON-CRICK B DT 102 A O4 DT 2 1_555 C DA 115 B N6 DA 7 1_555 hydrog WATSON-CRICK B DA 103 A N1 DA 3 1_555 C DT 114 B N3 DT 6 1_555 hydrog WATSON-CRICK B DA 103 A N6 DA 3 1_555 C DT 114 B O4 DT 6 1_555 hydrog WATSON-CRICK B DA 104 A N1 DA 4 1_555 C DT 113 B N3 DT 5 1_555 hydrog WATSON-CRICK B DA 104 A N6 DA 4 1_555 C DT 113 B O4 DT 5 1_555 hydrog WATSON-CRICK B DT 105 A N3 DT 5 1_555 C DA 112 B N1 DA 4 1_555 hydrog WATSON-CRICK B DT 105 A O4 DT 5 1_555 C DA 112 B N6 DA 4 1_555 hydrog WATSON-CRICK B DT 106 A N3 DT 6 1_555 C DA 111 B N1 DA 3 1_555 hydrog WATSON-CRICK B DT 106 A O4 DT 6 1_555 C DA 111 B N6 DA 3 1_555 hydrog WATSON-CRICK B DA 107 A N1 DA 7 1_555 C DT 110 B N3 DT 2 1_555 hydrog WATSON-CRICK B DA 107 A N6 DA 7 1_555 C DT 110 B O4 DT 2 1_555 hydrog WATSON-CRICK B DC 108 A N3 DC 8 1_555 C DG 109 B N1 DG 1 1_555 hydrog WATSON-CRICK B DC 108 A N4 DC 8 1_555 C DG 109 B O6 DG 1 1_555 hydrog WATSON-CRICK B DC 108 A O2 DC 8 1_555 C DG 109 B N2 DG 1 1_555 DNA BINDING PROTEIN/DNA COMPLEX (CHROMATIN PROTEIN-DNA), DNA-BINDING, ARCHEA, KINKED-DNA, MINOR-GROOVE BINDING, INTERCALATION, DNA BINDING PROTEIN-DNA COMPLEX DN71_SULAC UNP 2 P13123 1AZQ PDB 1 1AZQ 1 65 1AZQ 2 66 P13123 A 1 2 66 101 108 1AZQ 101 108 1AZQ B 2 1 8 109 116 1AZQ 109 116 1AZQ C 2 1 8 2 3 anti-parallel anti-parallel anti-parallel A LYS 3 C LYS 3 A TYR 8 C TYR 8 A GLU 11 C GLU 11 A ASP 16 C ASP 16 A LYS 39 C LYS 39 A SER 46 C SER 46 A MET 29 C MET 29 A ASP 36 C ASP 36 A ILE 20 C ILE 20 A VAL 26 C VAL 26 19 orthorhombic P 21 21 21