0.012189
0.000000
0.000000
0.000000
0.007037
0.000000
0.000000
0.000000
0.012843
0.00000
0.00000
0.00000
Schormann, N.
Benson, M.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
90.00
82.040
142.110
77.860
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
O
N
138
N
H
N
139
N
H
N
140
N
N
N
141
S
C
N
142
N
C
N
143
N
O
N
144
S
C
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
N
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
S
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
N
C
Y
234
N
C
Y
235
N
C
Y
236
N
C
Y
237
N
C
Y
238
N
C
Y
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
N
274
N
O
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
R
C
N
288
N
O
N
289
N
C
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
N
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
N
338
N
O
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
N
356
N
C
N
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
Y
227
N
doub
Y
228
N
sing
Y
229
N
sing
N
230
N
sing
Y
231
N
doub
N
232
N
sing
Y
233
N
doub
N
234
N
sing
Y
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
Y
296
N
doub
Y
297
N
sing
Y
298
N
sing
N
299
N
sing
Y
300
N
doub
Y
301
N
sing
Y
302
N
sing
N
303
N
sing
Y
304
N
sing
Y
305
N
doub
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
Y
324
N
doub
Y
325
N
sing
Y
326
N
sing
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
US
Amyloid
9999
1350-6129
5
175
187
9818054
Tertiary structures of amyloidogenic and non-amyloidogenic transthyretin variants: new model for amyloid fibril formation
1998
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
92
9490
9494
Tertiary Structure of an Amyloid Immunoglobulin Light Chain Protein: A Proposed Model for Amyloid Fibril Formation
1995
10.2210/pdb1b0w/pdb
pdb_00001b0w
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
287
1
COLLIMATOR
IMAGE PLATE
1994-02-01
RIGAKU
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
11945.124
BENCE-JONES KAPPA I PROTEIN BRE
VARIABLE DOMAIN OF LIGHT CHAIN
3
man
polymer
18.015
water
104
nat
water
BENCE-JONES
no
no
DIQMTQSPSSLSASVGDRVTITCQASQDISDYLIWYQQKLGKAPNLLIYDASTLETGVPSRFSGSGSGTEYTFTISSLQP
EDIATYYCQQYDDLPYTFGQGTKVEIKR
DIQMTQSPSSLSASVGDRVTITCQASQDISDYLIWYQQKLGKAPNLLIYDASTLETGVPSRFSGSGSGTEYTFTISSLQP
EDIATYYCQQYDDLPYTFGQGTKVEIKR
A,B,C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
PATIENT BRE
9606
Homo sapiens
CDNA (GENBANK ACCESSION CODE U31344)
562
Escherichia coli
HB101
PLASMID
PCZ11
1
3.2
61.15
VAPOR DIFFUSION, HANGING DROP
6.5
CRYSTALS OF BRE (20MG/ML IN 0.1M TRIS BUFFER, PH 7) WERE GROWN AT RT IN
HANGING-DROPS USING 2.5M AMMONIUM SULFATE IN 0.1M CITRATE BUFFER (PH 5.5)., pH 6.5, VAPOR DIFFUSION, HANGING DROP
software
pdbx_distant_solvent_atoms
pdbx_struct_assembly
pdbx_struct_assembly_gen
pdbx_struct_oper_list
struct_biol
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Advisory
Author supporting evidence
Data collection
Derived calculations
Data collection
Database references
Refinement description
1
0
1998-11-16
1
1
2008-04-26
1
2
2011-07-13
1
3
2017-10-04
1
4
2018-05-30
1
5
2023-08-09
_software.name
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly_gen.oper_expression
_struct_biol.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
different crystal form
BNL
Y
RCSB
1998-11-13
REL
REL
1
A
O
HOH
109
6.24
1
A
O
HOH
138
6.30
1
A
O
HOH
164
6.46
1
A
O
HOH
170
6.44
1
C
O
HOH
121
5.81
1
C
O
HOH
122
6.80
1
C
O
HOH
132
6.33
1
C
O
HOH
139
5.87
HOH
water
1BRE
PDB ENTRY 1BRE
PDB
experimental model
HOH
1
2
HOH
HOH
109
A
HOH
2
2
HOH
HOH
110
A
HOH
3
2
HOH
HOH
111
A
HOH
4
2
HOH
HOH
112
A
HOH
5
2
HOH
HOH
113
A
HOH
6
2
HOH
HOH
114
A
HOH
8
2
HOH
HOH
115
A
HOH
9
2
HOH
HOH
116
A
HOH
10
2
HOH
HOH
117
A
HOH
11
2
HOH
HOH
118
A
HOH
12
2
HOH
HOH
119
A
HOH
13
2
HOH
HOH
120
A
HOH
15
2
HOH
HOH
121
A
HOH
17
2
HOH
HOH
122
A
HOH
18
2
HOH
HOH
123
A
HOH
19
2
HOH
HOH
124
A
HOH
20
2
HOH
HOH
125
A
HOH
21
2
HOH
HOH
126
A
HOH
22
2
HOH
HOH
127
A
HOH
23
2
HOH
HOH
128
A
HOH
25
2
HOH
HOH
129
A
HOH
27
2
HOH
HOH
130
A
HOH
29
2
HOH
HOH
131
A
HOH
31
2
HOH
HOH
132
A
HOH
107
2
HOH
HOH
133
A
HOH
109
2
HOH
HOH
134
A
HOH
112
2
HOH
HOH
135
A
HOH
114
2
HOH
HOH
136
A
HOH
115
2
HOH
HOH
137
A
HOH
116
2
HOH
HOH
138
A
HOH
122
2
HOH
HOH
139
A
HOH
128
2
HOH
HOH
140
A
HOH
134
2
HOH
HOH
141
A
HOH
141
2
HOH
HOH
142
A
HOH
148
2
HOH
HOH
143
A
HOH
151
2
HOH
HOH
144
A
HOH
153
2
HOH
HOH
145
A
HOH
208
2
HOH
HOH
146
A
HOH
212
2
HOH
HOH
147
A
HOH
213
2
HOH
HOH
148
A
HOH
215
2
HOH
HOH
149
A
HOH
224
2
HOH
HOH
150
A
HOH
228
2
HOH
HOH
151
A
HOH
234
2
HOH
HOH
152
A
HOH
235
2
HOH
HOH
153
A
HOH
236
2
HOH
HOH
154
A
HOH
241
2
HOH
HOH
155
A
HOH
242
2
HOH
HOH
156
A
HOH
244
2
HOH
HOH
157
A
HOH
245
2
HOH
HOH
158
A
HOH
246
2
HOH
HOH
159
A
HOH
248
2
HOH
HOH
160
A
HOH
256
2
HOH
HOH
161
A
HOH
258
2
HOH
HOH
162
A
HOH
259
2
HOH
HOH
163
A
HOH
262
2
HOH
HOH
164
A
HOH
264
2
HOH
HOH
165
A
HOH
265
2
HOH
HOH
166
A
HOH
267
2
HOH
HOH
167
A
HOH
270
2
HOH
HOH
168
A
HOH
277
2
HOH
HOH
169
A
HOH
280
2
HOH
HOH
170
A
HOH
281
2
HOH
HOH
171
A
HOH
285
2
HOH
HOH
172
A
HOH
287
2
HOH
HOH
173
A
HOH
120
2
HOH
HOH
120
B
HOH
139
2
HOH
HOH
139
B
HOH
216
2
HOH
HOH
216
B
HOH
223
2
HOH
HOH
223
B
HOH
226
2
HOH
HOH
226
B
HOH
261
2
HOH
HOH
261
B
HOH
263
2
HOH
HOH
263
B
HOH
282
2
HOH
HOH
282
B
HOH
32
2
HOH
HOH
109
C
HOH
132
2
HOH
HOH
110
C
HOH
152
2
HOH
HOH
111
C
HOH
218
2
HOH
HOH
112
C
HOH
219
2
HOH
HOH
113
C
HOH
222
2
HOH
HOH
114
C
HOH
225
2
HOH
HOH
115
C
HOH
227
2
HOH
HOH
116
C
HOH
230
2
HOH
HOH
117
C
HOH
231
2
HOH
HOH
118
C
HOH
232
2
HOH
HOH
119
C
HOH
237
2
HOH
HOH
120
C
HOH
238
2
HOH
HOH
121
C
HOH
239
2
HOH
HOH
122
C
HOH
240
2
HOH
HOH
123
C
HOH
243
2
HOH
HOH
124
C
HOH
247
2
HOH
HOH
125
C
HOH
251
2
HOH
HOH
126
C
HOH
255
2
HOH
HOH
127
C
HOH
260
2
HOH
HOH
128
C
HOH
266
2
HOH
HOH
129
C
HOH
271
2
HOH
HOH
130
C
HOH
273
2
HOH
HOH
131
C
HOH
274
2
HOH
HOH
132
C
HOH
275
2
HOH
HOH
133
C
HOH
276
2
HOH
HOH
134
C
HOH
278
2
HOH
HOH
135
C
HOH
279
2
HOH
HOH
136
C
HOH
283
2
HOH
HOH
137
C
HOH
284
2
HOH
HOH
138
C
HOH
286
2
HOH
HOH
139
C
ASP
1
n
1
ASP
1
A
ILE
2
n
2
ILE
2
A
GLN
3
n
3
GLN
3
A
MET
4
n
4
MET
4
A
THR
5
n
5
THR
5
A
GLN
6
n
6
GLN
6
A
SER
7
n
7
SER
7
A
PRO
8
n
8
PRO
8
A
SER
9
n
9
SER
9
A
SER
10
n
10
SER
10
A
LEU
11
n
11
LEU
11
A
SER
12
n
12
SER
12
A
ALA
13
n
13
ALA
13
A
SER
14
n
14
SER
14
A
VAL
15
n
15
VAL
15
A
GLY
16
n
16
GLY
16
A
ASP
17
n
17
ASP
17
A
ARG
18
n
18
ARG
18
A
VAL
19
n
19
VAL
19
A
THR
20
n
20
THR
20
A
ILE
21
n
21
ILE
21
A
THR
22
n
22
THR
22
A
CYS
23
n
23
CYS
23
A
GLN
24
n
24
GLN
24
A
ALA
25
n
25
ALA
25
A
SER
26
n
26
SER
26
A
GLN
27
n
27
GLN
27
A
ASP
28
n
28
ASP
28
A
ILE
29
n
29
ILE
29
A
SER
30
n
30
SER
30
A
ASP
31
n
31
ASP
31
A
TYR
32
n
32
TYR
32
A
LEU
33
n
33
LEU
33
A
ILE
34
n
34
ILE
34
A
TRP
35
n
35
TRP
35
A
TYR
36
n
36
TYR
36
A
GLN
37
n
37
GLN
37
A
GLN
38
n
38
GLN
38
A
LYS
39
n
39
LYS
39
A
LEU
40
n
40
LEU
40
A
GLY
41
n
41
GLY
41
A
LYS
42
n
42
LYS
42
A
ALA
43
n
43
ALA
43
A
PRO
44
n
44
PRO
44
A
ASN
45
n
45
ASN
45
A
LEU
46
n
46
LEU
46
A
LEU
47
n
47
LEU
47
A
ILE
48
n
48
ILE
48
A
TYR
49
n
49
TYR
49
A
ASP
50
n
50
ASP
50
A
ALA
51
n
51
ALA
51
A
SER
52
n
52
SER
52
A
THR
53
n
53
THR
53
A
LEU
54
n
54
LEU
54
A
GLU
55
n
55
GLU
55
A
THR
56
n
56
THR
56
A
GLY
57
n
57
GLY
57
A
VAL
58
n
58
VAL
58
A
PRO
59
n
59
PRO
59
A
SER
60
n
60
SER
60
A
ARG
61
n
61
ARG
61
A
PHE
62
n
62
PHE
62
A
SER
63
n
63
SER
63
A
GLY
64
n
64
GLY
64
A
SER
65
n
65
SER
65
A
GLY
66
n
66
GLY
66
A
SER
67
n
67
SER
67
A
GLY
68
n
68
GLY
68
A
THR
69
n
69
THR
69
A
GLU
70
n
70
GLU
70
A
TYR
71
n
71
TYR
71
A
THR
72
n
72
THR
72
A
PHE
73
n
73
PHE
73
A
THR
74
n
74
THR
74
A
ILE
75
n
75
ILE
75
A
SER
76
n
76
SER
76
A
SER
77
n
77
SER
77
A
LEU
78
n
78
LEU
78
A
GLN
79
n
79
GLN
79
A
PRO
80
n
80
PRO
80
A
GLU
81
n
81
GLU
81
A
ASP
82
n
82
ASP
82
A
ILE
83
n
83
ILE
83
A
ALA
84
n
84
ALA
84
A
THR
85
n
85
THR
85
A
TYR
86
n
86
TYR
86
A
TYR
87
n
87
TYR
87
A
CYS
88
n
88
CYS
88
A
GLN
89
n
89
GLN
89
A
GLN
90
n
90
GLN
90
A
TYR
91
n
91
TYR
91
A
ASP
92
n
92
ASP
92
A
ASP
93
n
93
ASP
93
A
LEU
94
n
94
LEU
94
A
PRO
95
n
95
PRO
95
A
TYR
96
n
96
TYR
96
A
THR
97
n
97
THR
97
A
PHE
98
n
98
PHE
98
A
GLY
99
n
99
GLY
99
A
GLN
100
n
100
GLN
100
A
GLY
101
n
101
GLY
101
A
THR
102
n
102
THR
102
A
LYS
103
n
103
LYS
103
A
VAL
104
n
104
VAL
104
A
GLU
105
n
105
GLU
105
A
ILE
106
n
106
ILE
106
A
LYS
107
n
107
LYS
107
A
ARG
108
n
108
ARG
108
A
ASP
1
n
1
ASP
1
B
ILE
2
n
2
ILE
2
B
GLN
3
n
3
GLN
3
B
MET
4
n
4
MET
4
B
THR
5
n
5
THR
5
B
GLN
6
n
6
GLN
6
B
SER
7
n
7
SER
7
B
PRO
8
n
8
PRO
8
B
SER
9
n
9
SER
9
B
SER
10
n
10
SER
10
B
LEU
11
n
11
LEU
11
B
SER
12
n
12
SER
12
B
ALA
13
n
13
ALA
13
B
SER
14
n
14
SER
14
B
VAL
15
n
15
VAL
15
B
GLY
16
n
16
GLY
16
B
ASP
17
n
17
ASP
17
B
ARG
18
n
18
ARG
18
B
VAL
19
n
19
VAL
19
B
THR
20
n
20
THR
20
B
ILE
21
n
21
ILE
21
B
THR
22
n
22
THR
22
B
CYS
23
n
23
CYS
23
B
GLN
24
n
24
GLN
24
B
ALA
25
n
25
ALA
25
B
SER
26
n
26
SER
26
B
GLN
27
n
27
GLN
27
B
ASP
28
n
28
ASP
28
B
ILE
29
n
29
ILE
29
B
SER
30
n
30
SER
30
B
ASP
31
n
31
ASP
31
B
TYR
32
n
32
TYR
32
B
LEU
33
n
33
LEU
33
B
ILE
34
n
34
ILE
34
B
TRP
35
n
35
TRP
35
B
TYR
36
n
36
TYR
36
B
GLN
37
n
37
GLN
37
B
GLN
38
n
38
GLN
38
B
LYS
39
n
39
LYS
39
B
LEU
40
n
40
LEU
40
B
GLY
41
n
41
GLY
41
B
LYS
42
n
42
LYS
42
B
ALA
43
n
43
ALA
43
B
PRO
44
n
44
PRO
44
B
ASN
45
n
45
ASN
45
B
LEU
46
n
46
LEU
46
B
LEU
47
n
47
LEU
47
B
ILE
48
n
48
ILE
48
B
TYR
49
n
49
TYR
49
B
ASP
50
n
50
ASP
50
B
ALA
51
n
51
ALA
51
B
SER
52
n
52
SER
52
B
THR
53
n
53
THR
53
B
LEU
54
n
54
LEU
54
B
GLU
55
n
55
GLU
55
B
THR
56
n
56
THR
56
B
GLY
57
n
57
GLY
57
B
VAL
58
n
58
VAL
58
B
PRO
59
n
59
PRO
59
B
SER
60
n
60
SER
60
B
ARG
61
n
61
ARG
61
B
PHE
62
n
62
PHE
62
B
SER
63
n
63
SER
63
B
GLY
64
n
64
GLY
64
B
SER
65
n
65
SER
65
B
GLY
66
n
66
GLY
66
B
SER
67
n
67
SER
67
B
GLY
68
n
68
GLY
68
B
THR
69
n
69
THR
69
B
GLU
70
n
70
GLU
70
B
TYR
71
n
71
TYR
71
B
THR
72
n
72
THR
72
B
PHE
73
n
73
PHE
73
B
THR
74
n
74
THR
74
B
ILE
75
n
75
ILE
75
B
SER
76
n
76
SER
76
B
SER
77
n
77
SER
77
B
LEU
78
n
78
LEU
78
B
GLN
79
n
79
GLN
79
B
PRO
80
n
80
PRO
80
B
GLU
81
n
81
GLU
81
B
ASP
82
n
82
ASP
82
B
ILE
83
n
83
ILE
83
B
ALA
84
n
84
ALA
84
B
THR
85
n
85
THR
85
B
TYR
86
n
86
TYR
86
B
TYR
87
n
87
TYR
87
B
CYS
88
n
88
CYS
88
B
GLN
89
n
89
GLN
89
B
GLN
90
n
90
GLN
90
B
TYR
91
n
91
TYR
91
B
ASP
92
n
92
ASP
92
B
ASP
93
n
93
ASP
93
B
LEU
94
n
94
LEU
94
B
PRO
95
n
95
PRO
95
B
TYR
96
n
96
TYR
96
B
THR
97
n
97
THR
97
B
PHE
98
n
98
PHE
98
B
GLY
99
n
99
GLY
99
B
GLN
100
n
100
GLN
100
B
GLY
101
n
101
GLY
101
B
THR
102
n
102
THR
102
B
LYS
103
n
103
LYS
103
B
VAL
104
n
104
VAL
104
B
GLU
105
n
105
GLU
105
B
ILE
106
n
106
ILE
106
B
LYS
107
n
107
LYS
107
B
ARG
108
n
108
ARG
108
B
ASP
1
n
1
ASP
1
C
ILE
2
n
2
ILE
2
C
GLN
3
n
3
GLN
3
C
MET
4
n
4
MET
4
C
THR
5
n
5
THR
5
C
GLN
6
n
6
GLN
6
C
SER
7
n
7
SER
7
C
PRO
8
n
8
PRO
8
C
SER
9
n
9
SER
9
C
SER
10
n
10
SER
10
C
LEU
11
n
11
LEU
11
C
SER
12
n
12
SER
12
C
ALA
13
n
13
ALA
13
C
SER
14
n
14
SER
14
C
VAL
15
n
15
VAL
15
C
GLY
16
n
16
GLY
16
C
ASP
17
n
17
ASP
17
C
ARG
18
n
18
ARG
18
C
VAL
19
n
19
VAL
19
C
THR
20
n
20
THR
20
C
ILE
21
n
21
ILE
21
C
THR
22
n
22
THR
22
C
CYS
23
n
23
CYS
23
C
GLN
24
n
24
GLN
24
C
ALA
25
n
25
ALA
25
C
SER
26
n
26
SER
26
C
GLN
27
n
27
GLN
27
C
ASP
28
n
28
ASP
28
C
ILE
29
n
29
ILE
29
C
SER
30
n
30
SER
30
C
ASP
31
n
31
ASP
31
C
TYR
32
n
32
TYR
32
C
LEU
33
n
33
LEU
33
C
ILE
34
n
34
ILE
34
C
TRP
35
n
35
TRP
35
C
TYR
36
n
36
TYR
36
C
GLN
37
n
37
GLN
37
C
GLN
38
n
38
GLN
38
C
LYS
39
n
39
LYS
39
C
LEU
40
n
40
LEU
40
C
GLY
41
n
41
GLY
41
C
LYS
42
n
42
LYS
42
C
ALA
43
n
43
ALA
43
C
PRO
44
n
44
PRO
44
C
ASN
45
n
45
ASN
45
C
LEU
46
n
46
LEU
46
C
LEU
47
n
47
LEU
47
C
ILE
48
n
48
ILE
48
C
TYR
49
n
49
TYR
49
C
ASP
50
n
50
ASP
50
C
ALA
51
n
51
ALA
51
C
SER
52
n
52
SER
52
C
THR
53
n
53
THR
53
C
LEU
54
n
54
LEU
54
C
GLU
55
n
55
GLU
55
C
THR
56
n
56
THR
56
C
GLY
57
n
57
GLY
57
C
VAL
58
n
58
VAL
58
C
PRO
59
n
59
PRO
59
C
SER
60
n
60
SER
60
C
ARG
61
n
61
ARG
61
C
PHE
62
n
62
PHE
62
C
SER
63
n
63
SER
63
C
GLY
64
n
64
GLY
64
C
SER
65
n
65
SER
65
C
GLY
66
n
66
GLY
66
C
SER
67
n
67
SER
67
C
GLY
68
n
68
GLY
68
C
THR
69
n
69
THR
69
C
GLU
70
n
70
GLU
70
C
TYR
71
n
71
TYR
71
C
THR
72
n
72
THR
72
C
PHE
73
n
73
PHE
73
C
THR
74
n
74
THR
74
C
ILE
75
n
75
ILE
75
C
SER
76
n
76
SER
76
C
SER
77
n
77
SER
77
C
LEU
78
n
78
LEU
78
C
GLN
79
n
79
GLN
79
C
PRO
80
n
80
PRO
80
C
GLU
81
n
81
GLU
81
C
ASP
82
n
82
ASP
82
C
ILE
83
n
83
ILE
83
C
ALA
84
n
84
ALA
84
C
THR
85
n
85
THR
85
C
TYR
86
n
86
TYR
86
C
TYR
87
n
87
TYR
87
C
CYS
88
n
88
CYS
88
C
GLN
89
n
89
GLN
89
C
GLN
90
n
90
GLN
90
C
TYR
91
n
91
TYR
91
C
ASP
92
n
92
ASP
92
C
ASP
93
n
93
ASP
93
C
LEU
94
n
94
LEU
94
C
PRO
95
n
95
PRO
95
C
TYR
96
n
96
TYR
96
C
THR
97
n
97
THR
97
C
PHE
98
n
98
PHE
98
C
GLY
99
n
99
GLY
99
C
GLN
100
n
100
GLN
100
C
GLY
101
n
101
GLY
101
C
THR
102
n
102
THR
102
C
LYS
103
n
103
LYS
103
C
VAL
104
n
104
VAL
104
C
GLU
105
n
105
GLU
105
C
ILE
106
n
106
ILE
106
C
LYS
107
n
107
LYS
107
C
ARG
108
n
108
ARG
108
C
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
5
A
O
THR
5
A
N
GLN
24
A
N
GLN
24
A
O
VAL
19
A
O
VAL
19
A
N
ILE
75
A
N
ILE
75
A
O
GLU
70
A
O
GLU
70
A
N
SER
67
A
N
SER
67
A
O
LEU
11
A
O
LEU
11
A
N
LYS
103
A
N
LYS
103
A
O
THR
102
A
O
THR
102
A
N
TYR
86
A
N
TYR
86
A
O
THR
85
A
O
THR
85
A
N
GLN
38
A
N
GLN
38
A
O
TRP
35
A
O
TRP
35
A
N
ILE
48
A
N
ILE
48
B
O
THR
5
B
O
THR
5
B
N
GLN
24
B
N
GLN
24
B
O
VAL
19
B
O
VAL
19
B
N
ILE
75
B
N
ILE
75
B
O
GLU
70
B
O
GLU
70
B
N
SER
67
B
N
SER
67
B
O
LEU
11
B
O
LEU
11
B
N
LYS
103
B
N
LYS
103
B
O
THR
102
B
O
THR
102
B
N
TYR
86
B
N
TYR
86
B
O
THR
85
B
O
THR
85
B
N
GLN
38
B
N
GLN
38
B
O
TRP
35
B
O
TRP
35
B
N
ILE
48
B
N
ILE
48
C
O
THR
5
C
O
THR
5
C
N
GLN
24
C
N
GLN
24
C
O
VAL
19
C
O
VAL
19
C
N
ILE
75
C
N
ILE
75
C
O
GLU
70
C
O
GLU
70
C
N
SER
67
C
N
SER
67
C
O
LEU
11
C
O
LEU
11
C
N
LYS
103
C
N
LYS
103
C
O
THR
102
C
O
THR
102
C
N
TYR
86
C
N
TYR
86
C
O
THR
85
C
O
THR
85
C
N
GLN
38
C
N
GLN
38
C
O
TRP
35
C
O
TRP
35
C
N
ILE
48
C
N
ILE
48
1
13.96
2.30
115.30
129.26
A
A
A
CA
CB
CG
LEU
LEU
LEU
11
11
11
N
1
13.88
2.30
115.30
129.18
C
C
C
CA
CB
CG
LEU
LEU
LEU
11
11
11
N
1
A
ASP
31
74.04
-2.23
1
A
ALA
51
63.51
-37.37
1
A
ALA
84
-179.81
-168.02
1
B
ALA
51
75.47
-34.41
1
B
ALA
84
177.39
-171.79
1
C
ALA
51
69.33
-43.78
PARHCSDX.PRO
TOPHCSDX.PRO
PARAM19.SOL
TOPH19.SOL
TOPH19.PEP
25.3
0.299
0.226
1.80
5.00
1568
31772
5.0
77.3
RANDOM
1
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
PDB ENTRY 1BRE
0.28
5.00
0.33
1.80
5.00
104
2624
0
0
2520
0.011
1.84
26.9
1.50
0.419
0.384
1.88
136
2535
8
5.4
53.8
17.7
1.75
52.5
1B0W
35142
1
0.071
0.047
1
7.5
2.3
76
0.218
1.75
2.00
1.92
0.255
1.8
56
data collection
bioteX
data reduction
bioteX
phasing
AMoRE
refinement
X-PLOR
3.1
data scaling
bioteX
Structural comparison of amyloidogenic light chain dimer in two crystal forms with nonamyloidogenic counterparts
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
monomer
A
PRO
80
A
PRO
80
HELX_P
A
ASP
82
A
ASP
82
5
1
3
B
PRO
80
B
PRO
80
HELX_P
B
ASP
82
B
ASP
82
5
2
3
C
PRO
80
C
PRO
80
HELX_P
C
ASP
82
C
ASP
82
5
3
3
disulf
2.031
A
CYS
23
A
SG
CYS
23
1_555
A
CYS
88
A
SG
CYS
88
1_555
disulf
2.017
B
CYS
23
B
SG
CYS
23
1_555
B
CYS
88
B
SG
CYS
88
1_555
disulf
2.033
C
CYS
23
C
SG
CYS
23
1_555
C
CYS
88
C
SG
CYS
88
1_555
IMMUNE SYSTEM
IMMUNOGLOBULIN, AMYLOID, IMMUNE SYSTEM
A
SER
7
A
SER
7
1
A
PRO
8
A
PRO
8
-0.33
A
LEU
94
A
LEU
94
1
A
PRO
95
A
PRO
95
-0.26
B
SER
7
B
SER
7
1
B
PRO
8
B
PRO
8
0.10
B
LEU
94
B
LEU
94
1
B
PRO
95
B
PRO
95
-0.26
C
SER
7
C
SER
7
1
C
PRO
8
C
PRO
8
-0.40
C
LEU
94
C
LEU
94
1
C
PRO
95
C
PRO
95
-0.13
given
-0.498320
-0.866990
0.001570
0.866990
0.498310
-0.004420
0.003050
0.003570
0.999990
61.57912
35.67698
12.75636
given
-0.498900
-0.866660
0.002470
0.866660
0.498900
0.000480
-0.000820
-0.002380
1.000000
-61.69847
35.61665
-12.67716
given
-0.502790
0.864400
0.004440
-0.864400
-0.502800
0.001710
0.003710
-0.002980
0.999990
-61.54691
106.75963
-25.65269
KV1B_HUMAN
UNP
1
P01594
1
108
1B0W
1
108
P01594
A
1
1
108
1
108
1B0W
1
108
P01594
B
1
1
108
1
108
1B0W
1
108
P01594
C
1
1
108
4
5
4
5
4
5
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
MET
4
A
MET
4
A
SER
7
A
SER
7
A
VAL
19
A
VAL
19
A
ALA
25
A
ALA
25
A
GLU
70
A
GLU
70
A
ILE
75
A
ILE
75
A
PHE
62
A
PHE
62
A
SER
67
A
SER
67
A
SER
10
A
SER
10
A
ALA
13
A
ALA
13
A
THR
102
A
THR
102
A
ILE
106
A
ILE
106
A
ALA
84
A
ALA
84
A
GLN
90
A
GLN
90
A
LEU
33
A
LEU
33
A
GLN
38
A
GLN
38
A
ASN
45
A
ASN
45
A
ILE
48
A
ILE
48
B
MET
4
B
MET
4
B
SER
7
B
SER
7
B
VAL
19
B
VAL
19
B
ALA
25
B
ALA
25
B
GLU
70
B
GLU
70
B
ILE
75
B
ILE
75
B
PHE
62
B
PHE
62
B
SER
67
B
SER
67
B
SER
10
B
SER
10
B
ALA
13
B
ALA
13
B
THR
102
B
THR
102
B
ILE
106
B
ILE
106
B
ALA
84
B
ALA
84
B
GLN
90
B
GLN
90
B
LEU
33
B
LEU
33
B
GLN
38
B
GLN
38
B
ASN
45
B
ASN
45
B
ILE
48
B
ILE
48
C
MET
4
C
MET
4
C
SER
7
C
SER
7
C
VAL
19
C
VAL
19
C
ALA
25
C
ALA
25
C
GLU
70
C
GLU
70
C
ILE
75
C
ILE
75
C
PHE
62
C
PHE
62
C
SER
67
C
SER
67
C
SER
10
C
SER
10
C
ALA
13
C
ALA
13
C
THR
102
C
THR
102
C
ILE
106
C
ILE
106
C
ALA
84
C
ALA
84
C
GLN
90
C
GLN
90
C
LEU
33
C
LEU
33
C
GLN
38
C
GLN
38
C
ASN
45
C
ASN
45
C
ILE
48
C
ILE
48
20
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