0.015559 0.008983 0.000000 0.000000 0.017966 0.000000 0.000000 0.000000 0.030377 0.00000 0.00000 0.00000 Maher, M.J. Guss, J.M. Wilce, M.C.J. Wedd, A.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 9 90.00 90.00 120.00 64.270 64.270 32.920 C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking Fe 3 55.845 FE (III) ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N O N 21 N N N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N N N 32 S C N 33 N C N 34 N O N 35 N C N 36 N C N 37 N O N 38 N O N 39 N O N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N N N 48 R C N 49 N C N 50 N O N 51 N C N 52 N S N 53 N O N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N FE N 62 N N N 63 S C N 64 N C N 65 N O N 66 N C N 67 N C N 68 N C N 69 N O N 70 N N N 71 N O N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N N N 83 S C N 84 N C N 85 N O N 86 N C N 87 N C N 88 N C N 89 N O N 90 N O N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N N N 102 N C N 103 N C N 104 N O N 105 N O N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N H N 113 N H N 114 N N N 115 S C N 116 N C N 117 N O N 118 S C N 119 N C N 120 N C N 121 N C N 122 N O N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N N N 137 S C N 138 N C N 139 N O N 140 N C N 141 N C N 142 N C N 143 N C N 144 N O N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 N C N 163 N C N 164 N C N 165 N C N 166 N N N 167 N O N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N S N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N N N 204 S C N 205 N C N 206 N O N 207 N C Y 208 N C Y 209 N C Y 210 N C Y 211 N C Y 212 N C Y 213 N C N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C N 231 N C N 232 N C N 233 N O N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N N N 244 S C N 245 N C N 246 N O N 247 R C N 248 N O N 249 N C N 250 N O N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C Y 265 N C Y 266 N C Y 267 N C Y 268 N N Y 269 N C Y 270 N C Y 271 N C Y 272 N C Y 273 N C N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C Y 292 N C Y 293 N C Y 294 N C Y 295 N C Y 296 N C Y 297 N C N 298 N O N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N N N 312 S C N 313 N C N 314 N O N 315 N C N 316 N C N 317 N C N 318 N O N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N doub N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N doub N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N doub N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N doub N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing Y 201 N doub Y 202 N sing Y 203 N sing N 204 N sing Y 205 N doub N 206 N sing Y 207 N doub N 208 N sing Y 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N doub N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing Y 257 N doub Y 258 N sing Y 259 N sing N 260 N sing Y 261 N doub Y 262 N sing Y 263 N sing N 264 N sing Y 265 N sing Y 266 N doub N 267 N sing Y 268 N doub N 269 N sing Y 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N doub N 281 N sing N 282 N sing N 283 N sing N 284 N sing Y 285 N doub Y 286 N sing Y 287 N sing N 288 N sing Y 289 N doub N 290 N sing Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 55 962 968 10.1107/S0907444999001900 10216292 Rubredoxin from Clostridium pasteurianum. Structures of G10A, G43A and G10VG43A mutant proteins. Mutation of conserved glycine 10 to valine causes the 9-10 peptide link to invert. 1999 10.2210/pdb1b13/pdb pdb_00001b13 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293.0 1 MIRRORS IMAGE PLATE 1996-07-01 RIGAKU RU200 NI FILTER 0.00015" SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 6065.637 PROTEIN (RUBREDOXIN) G10A 1 man polymer 55.845 FE (III) ION 1 syn non-polymer 18.015 water 40 nat water no no MKKYTCTVCAYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEE MKKYTCTVCAYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Clostridium JM109 Escherichia sample CYTOPLASM CLORUB 1501 Clostridium pasteurianum CLORUB 562 Escherichia coli JM109 PLASMID PKK223-3 1 2.44 49.1 4.6 PROTEIN WAS CRYSTALLISED FROM 50-60% SATURATED AMMONIUM SULFATE IN SODIUM ACETATE BUFFER (50 MM) AT PH 4.6. 50-60% SATURATED AMMONIUM SULFATE 2 SODIUM ACETATE BUFFER (50 MM) AT PH 4.6. 2 database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Database references Derived calculations Data collection Refinement description 1 0 1999-05-27 1 1 2007-10-16 1 2 2011-07-13 1 3 2021-11-03 1 4 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y RCSB 1998-11-26 REL FE FE (III) ION HOH water 5RXN PDB experimental model FE 55 2 FE FE 55 A HOH 1 3 HOH HOH 56 A HOH 2 3 HOH HOH 57 A HOH 3 3 HOH HOH 58 A HOH 4 3 HOH HOH 59 A HOH 5 3 HOH HOH 60 A HOH 6 3 HOH HOH 61 A HOH 7 3 HOH HOH 62 A HOH 8 3 HOH HOH 63 A HOH 9 3 HOH HOH 64 A HOH 10 3 HOH HOH 65 A HOH 11 3 HOH HOH 66 A HOH 12 3 HOH HOH 67 A HOH 13 3 HOH HOH 68 A HOH 14 3 HOH HOH 69 A HOH 15 3 HOH HOH 70 A HOH 16 3 HOH HOH 71 A HOH 17 3 HOH HOH 72 A HOH 18 3 HOH HOH 73 A HOH 19 3 HOH HOH 74 A HOH 20 3 HOH HOH 75 A HOH 21 3 HOH HOH 76 A HOH 22 3 HOH HOH 77 A HOH 23 3 HOH HOH 78 A HOH 24 3 HOH HOH 79 A HOH 25 3 HOH HOH 80 A HOH 26 3 HOH HOH 81 A HOH 27 3 HOH HOH 82 A HOH 28 3 HOH HOH 83 A HOH 29 3 HOH HOH 84 A HOH 30 3 HOH HOH 85 A HOH 31 3 HOH HOH 86 A HOH 32 3 HOH HOH 87 A HOH 33 3 HOH HOH 88 A HOH 34 3 HOH HOH 89 A HOH 35 3 HOH HOH 90 A HOH 36 3 HOH HOH 91 A HOH 37 3 HOH HOH 92 A HOH 38 3 HOH HOH 93 A HOH 39 3 HOH HOH 94 A HOH 40 3 HOH HOH 95 A MET 1 n 1 MET 1 A LYS 2 n 2 LYS 2 A LYS 3 n 3 LYS 3 A TYR 4 n 4 TYR 4 A THR 5 n 5 THR 5 A CYS 6 n 6 CYS 6 A THR 7 n 7 THR 7 A VAL 8 n 8 VAL 8 A CYS 9 n 9 CYS 9 A ALA 10 n 10 ALA 10 A TYR 11 n 11 TYR 11 A ILE 12 n 12 ILE 12 A TYR 13 n 13 TYR 13 A ASN 14 n 14 ASN 14 A PRO 15 n 15 PRO 15 A GLU 16 n 16 GLU 16 A ASP 17 n 17 ASP 17 A GLY 18 n 18 GLY 18 A ASP 19 n 19 ASP 19 A PRO 20 n 20 PRO 20 A ASP 21 n 21 ASP 21 A ASN 22 n 22 ASN 22 A GLY 23 n 23 GLY 23 A VAL 24 n 24 VAL 24 A ASN 25 n 25 ASN 25 A PRO 26 n 26 PRO 26 A GLY 27 n 27 GLY 27 A THR 28 n 28 THR 28 A ASP 29 n 29 ASP 29 A PHE 30 n 30 PHE 30 A LYS 31 n 31 LYS 31 A ASP 32 n 32 ASP 32 A ILE 33 n 33 ILE 33 A PRO 34 n 34 PRO 34 A ASP 35 n 35 ASP 35 A ASP 36 n 36 ASP 36 A TRP 37 n 37 TRP 37 A VAL 38 n 38 VAL 38 A CYS 39 n 39 CYS 39 A PRO 40 n 40 PRO 40 A LEU 41 n 41 LEU 41 A CYS 42 n 42 CYS 42 A GLY 43 n 43 GLY 43 A VAL 44 n 44 VAL 44 A GLY 45 n 45 GLY 45 A LYS 46 n 46 LYS 46 A ASP 47 n 47 ASP 47 A GLN 48 n 48 GLN 48 A PHE 49 n 49 PHE 49 A GLU 50 n 50 GLU 50 A GLU 51 n 51 GLU 51 A VAL 52 n 52 VAL 52 A GLU 53 n 53 GLU 53 A GLU 54 n 54 GLU 54 A author_defined_assembly 1 monomeric A CYS 6 A SG CYS 6 1_555 A FE 55 B FE FE 1_555 A CYS 9 A SG CYS 9 1_555 112.5 A CYS 6 A SG CYS 6 1_555 A FE 55 B FE FE 1_555 A CYS 39 A SG CYS 39 1_555 110.7 A CYS 9 A SG CYS 9 1_555 A FE 55 B FE FE 1_555 A CYS 39 A SG CYS 39 1_555 105.6 A CYS 6 A SG CYS 6 1_555 A FE 55 B FE FE 1_555 A CYS 42 A SG CYS 42 1_555 102.9 A CYS 9 A SG CYS 9 1_555 A FE 55 B FE FE 1_555 A CYS 42 A SG CYS 42 1_555 113.4 A CYS 39 A SG CYS 39 1_555 A FE 55 B FE FE 1_555 A CYS 42 A SG CYS 42 1_555 112.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 13 A N TYR 13 A O TYR 4 A O TYR 4 A N THR 5 A N THR 5 A O GLU 50 A O GLU 50 1 A ALA 10 85.14 5.74 19 ESD FROM CRUIKSHANK (A): 0.08 0.1910000 0.1710000 1.50 30.0 383 7662 0.05 94.5 RANDOM 1 0.0 OTHER 5RXN 1.50 30.0 40 464 1 0 423 0.015 0.040 0.018 0.040 0.021 0.050 1.476 3.000 2.377 5.000 3.147 6.000 4.764 8.000 0.170 0.300 0.245 0.30 4.7 7.0 18.0 15.0 14.7 20.0 0.0 15.0 15.74 1.50 30.0 1B13 6061 0.0800000 1 12.5 3.3 94.5 0.2450000 1.50 1.55 2.2 1.5 58.8 refinement REFMAC data reduction DENZO data scaling SCALEPACK CLOSTRIDIUM PASTEURIANUM RUBREDOXIN G10A MUTANT 1 N N 2 N N 3 N N A PRO 20 A PRO 20 HELX_P A ASN 22 A ASN 22 5 1 3 A PHE 30 A PHE 30 HELX_P A ASP 32 A ASP 32 5 2 3 A LYS 46 A LYS 46 HELX_P A GLN 48 A GLN 48 5 3 3 metalc 2.350 A CYS 6 A SG CYS 6 1_555 A FE 55 B FE FE 1_555 metalc 2.270 A CYS 9 A SG CYS 9 1_555 A FE 55 B FE FE 1_555 metalc 2.292 A CYS 39 A SG CYS 39 1_555 A FE 55 B FE FE 1_555 metalc 2.320 A CYS 42 A SG CYS 42 1_555 A FE 55 B FE FE 1_555 ELECTRON TRANSPORT ELECTRON TRANSPORT, METALLOPROTEIN, IRON SULFUR, ELECTRON TRANSFER RUBR_CLOPA UNP 1 P00268 1 54 1B13 1 54 P00268 A 1 1 54 1 GLY engineered mutation ALA 10 1B13 A P00268 UNP 10 10 3 anti-parallel anti-parallel A ILE 12 A ILE 12 A TYR 13 A TYR 13 A TYR 4 A TYR 4 A CYS 6 A CYS 6 A PHE 49 A PHE 49 A GLU 51 A GLU 51 FE BINDING SITE. Author 5 BINDING SITE FOR RESIDUE FE A 55 A FE 55 Software 4 A FE 55 B FE 5 1_555 A CYS 6 A CYS 6 5 1_555 A CYS 9 A CYS 9 5 1_555 A CYS 39 A CYS 39 5 1_555 A CYS 42 A CYS 42 5 1_555 A CYS 6 A CYS 6 4 1_555 A CYS 9 A CYS 9 4 1_555 A CYS 39 A CYS 39 4 1_555 A CYS 42 A CYS 42 4 1_555 146 H 3