1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kordel, J.
Pearlman, D.A.
Chazin, W.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
O
N
21
N
N
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
N
N
32
S
C
N
33
N
C
N
34
N
O
N
35
N
C
N
36
N
C
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
CA
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
C
N
55
N
O
N
56
N
N
N
57
N
O
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
N
N
69
S
C
N
70
N
C
N
71
N
O
N
72
N
C
N
73
N
C
N
74
N
C
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
N
N
88
N
C
N
89
N
C
N
90
N
O
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
N
N
98
S
C
N
99
N
C
N
100
N
O
N
101
S
C
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
N
N
120
S
C
N
121
N
C
N
122
N
O
N
123
N
C
N
124
N
C
N
125
N
C
N
126
N
C
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
N
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
N
C
Y
171
N
C
Y
172
N
C
Y
173
N
C
Y
174
N
C
Y
175
N
C
Y
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
N
N
190
S
C
N
191
N
C
N
192
N
O
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
O
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
N
N
221
S
C
N
222
N
C
N
223
N
O
N
224
R
C
N
225
N
O
N
226
N
C
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
Y
247
N
C
N
248
N
O
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
doub
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
doub
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
Y
167
N
doub
Y
168
N
sing
Y
169
N
sing
N
170
N
sing
Y
171
N
doub
N
172
N
sing
Y
173
N
doub
N
174
N
sing
Y
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
Y
236
N
doub
Y
237
N
sing
Y
238
N
sing
N
239
N
sing
Y
240
N
doub
N
241
N
sing
Y
242
N
doub
N
243
N
sing
Y
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
NE
J.Biomol.NMR
JBNME9
0800
0925-2738
10
231
243
10.1023/A:1018383102870
9390401
Protein solution structure calculations in solution: solvated molecular dynamics refinement of calbindin D9k.
1997
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
231
711
High-Resolution Solution Structure of Calcium-Loaded Calbindin D9k
1993
US
Biochemistry
BICHAW
0033
0006-2960
29
4400
The Rate and Structural Consequences of Proline Cis-Trans Isomerization in Calbindin D9k: NMR Studies of the Minor (Cis-Pro43) Isoform and the Pro43Gly Mutant
1990
US
Biochemistry
BICHAW
0033
0006-2960
28
7065
1H NMR Sequential Resonance Assignments, Secondary Structure, and Global Fold in Solution of the Major (Trans-Pro43) Form of Bovine Calbindin D9k
1989
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
261
8761
The Refined Structure of Vitamin D-Dependent Calcium-Binding Protein from Bovine Intestine. Molecular Details, Ion Binding, and Implications for the Structure of Other Calcium-Binding Proteins
1986
10.2210/pdb1b1g/pdb
pdb_00001b1g
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
8470.492
PROTEIN (CALBINDIN D9K)
P43G
1
man
polymer
40.078
CALCIUM ION
2
syn
non-polymer
INTESTINAL CALCIUM-BINDING PROTEIN
no
no
KSPEELKGIFEKYAAKEGDPNQLSKEELKLLLQTEFPSLLKGGSTLDELFEELDKNGDGEVSFEEFQVLVKKISQ
KSPEELKGIFEKYAAKEGDPNQLSKEELKLLLQTEFPSLLKGGSTLDELFEELDKNGDGEVSFEEFQVLVKKISQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
cattle
Bos
Escherichia
sample
9913
Bos taurus
BL21(DE3)
562
Escherichia coli
chem_comp_atom
chem_comp_bond
database_2
pdbx_nmr_software
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Other
Data collection
Database references
Derived calculations
1
0
1998-11-25
1
1
2008-04-26
1
2
2011-07-13
1
3
2011-08-10
1
4
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
NDB
1998-11-20
REL
CA
CALCIUM ION
AUTHOR USED THE NMR DATA FROM ENTRY 2BCB.
ALL CONFORMERS USED
10
10
PREVIOUSLY CALCULATED DISGEO STRUCTURES WERE PLACED IN A BATH OF WATER
MOLECULES AND CALCIUM IONS WERE ADDED IN THE BINDING SITES. THE SYSTEM WAS
ENERGY MINIMIZED TO REMOVE BAD CONTACTS, THEN ANNEALED AT 300 K. DETAILS CAN
BE FOUND IN THE JRNL CITATION ABOVE.
DISTANCE GEOMETRY AND RESTRAINED MD WITH EXPLICIT SOLVENT
D.A.PEARLMAN,D.A.CASE,J.C.CALDWELL,G.L.SEIBEL,U.C.SINGH,P.WEINER AND P.A.KOLLMAN
refinement
Amber
4.0
structure solution
DISGEO, AMBER
CA
76
2
CA
CA
76
A
CA
77
2
CA
CA
77
A
LYS
1
n
1
LYS
1
A
SER
2
n
2
SER
2
A
PRO
3
n
3
PRO
3
A
GLU
4
n
4
GLU
4
A
GLU
5
n
5
GLU
5
A
LEU
6
n
6
LEU
6
A
LYS
7
n
7
LYS
7
A
GLY
8
n
8
GLY
8
A
ILE
9
n
9
ILE
9
A
PHE
10
n
10
PHE
10
A
GLU
11
n
11
GLU
11
A
LYS
12
n
12
LYS
12
A
TYR
13
n
13
TYR
13
A
ALA
14
n
14
ALA
14
A
ALA
15
n
15
ALA
15
A
LYS
16
n
16
LYS
16
A
GLU
17
n
17
GLU
17
A
GLY
18
n
18
GLY
18
A
ASP
19
n
19
ASP
19
A
PRO
20
n
20
PRO
20
A
ASN
21
n
21
ASN
21
A
GLN
22
n
22
GLN
22
A
LEU
23
n
23
LEU
23
A
SER
24
n
24
SER
24
A
LYS
25
n
25
LYS
25
A
GLU
26
n
26
GLU
26
A
GLU
27
n
27
GLU
27
A
LEU
28
n
28
LEU
28
A
LYS
29
n
29
LYS
29
A
LEU
30
n
30
LEU
30
A
LEU
31
n
31
LEU
31
A
LEU
32
n
32
LEU
32
A
GLN
33
n
33
GLN
33
A
THR
34
n
34
THR
34
A
GLU
35
n
35
GLU
35
A
PHE
36
n
36
PHE
36
A
PRO
37
n
37
PRO
37
A
SER
38
n
38
SER
38
A
LEU
39
n
39
LEU
39
A
LEU
40
n
40
LEU
40
A
LYS
41
n
41
LYS
41
A
GLY
42
n
42
GLY
42
A
GLY
43
n
43
GLY
43
A
SER
44
n
44
SER
44
A
THR
45
n
45
THR
45
A
LEU
46
n
46
LEU
46
A
ASP
47
n
47
ASP
47
A
GLU
48
n
48
GLU
48
A
LEU
49
n
49
LEU
49
A
PHE
50
n
50
PHE
50
A
GLU
51
n
51
GLU
51
A
GLU
52
n
52
GLU
52
A
LEU
53
n
53
LEU
53
A
ASP
54
n
54
ASP
54
A
LYS
55
n
55
LYS
55
A
ASN
56
n
56
ASN
56
A
GLY
57
n
57
GLY
57
A
ASP
58
n
58
ASP
58
A
GLY
59
n
59
GLY
59
A
GLU
60
n
60
GLU
60
A
VAL
61
n
61
VAL
61
A
SER
62
n
62
SER
62
A
PHE
63
n
63
PHE
63
A
GLU
64
n
64
GLU
64
A
GLU
65
n
65
GLU
65
A
PHE
66
n
66
PHE
66
A
GLN
67
n
67
GLN
67
A
VAL
68
n
68
VAL
68
A
LEU
69
n
69
LEU
69
A
VAL
70
n
70
VAL
70
A
LYS
71
n
71
LYS
71
A
LYS
72
n
72
LYS
72
A
ILE
73
n
73
ILE
73
A
SER
74
n
74
SER
74
A
GLN
75
n
75
GLN
75
A
author_defined_assembly
1
monomeric
A
ALA
14
A
O
ALA
14
1_555
A
CA
76
B
CA
CA
1_555
A
GLU
17
A
OE2
GLU
17
1_555
130.3
A
ALA
14
A
O
ALA
14
1_555
A
CA
76
B
CA
CA
1_555
A
ASP
19
A
O
ASP
19
1_555
70.1
A
GLU
17
A
OE2
GLU
17
1_555
A
CA
76
B
CA
CA
1_555
A
ASP
19
A
O
ASP
19
1_555
75.4
A
ALA
14
A
O
ALA
14
1_555
A
CA
76
B
CA
CA
1_555
A
ASP
19
A
OD2
ASP
19
1_555
92.2
A
GLU
17
A
OE2
GLU
17
1_555
A
CA
76
B
CA
CA
1_555
A
ASP
19
A
OD2
ASP
19
1_555
106.6
A
ASP
19
A
O
ASP
19
1_555
A
CA
76
B
CA
CA
1_555
A
ASP
19
A
OD2
ASP
19
1_555
67.7
A
ALA
14
A
O
ALA
14
1_555
A
CA
76
B
CA
CA
1_555
A
GLN
22
A
O
GLN
22
1_555
71.5
A
GLU
17
A
OE2
GLU
17
1_555
A
CA
76
B
CA
CA
1_555
A
GLN
22
A
O
GLN
22
1_555
157.7
A
ASP
19
A
O
ASP
19
1_555
A
CA
76
B
CA
CA
1_555
A
GLN
22
A
O
GLN
22
1_555
122.6
A
ASP
19
A
OD2
ASP
19
1_555
A
CA
76
B
CA
CA
1_555
A
GLN
22
A
O
GLN
22
1_555
73.0
A
ALA
14
A
O
ALA
14
1_555
A
CA
76
B
CA
CA
1_555
A
GLU
27
A
OE2
GLU
27
1_555
71.7
A
GLU
17
A
OE2
GLU
17
1_555
A
CA
76
B
CA
CA
1_555
A
GLU
27
A
OE2
GLU
27
1_555
81.9
A
ASP
19
A
O
ASP
19
1_555
A
CA
76
B
CA
CA
1_555
A
GLU
27
A
OE2
GLU
27
1_555
101.7
A
ASP
19
A
OD2
ASP
19
1_555
A
CA
76
B
CA
CA
1_555
A
GLU
27
A
OE2
GLU
27
1_555
163.4
A
GLN
22
A
O
GLN
22
1_555
A
CA
76
B
CA
CA
1_555
A
GLU
27
A
OE2
GLU
27
1_555
104.7
A
ALA
14
A
O
ALA
14
1_555
A
CA
76
B
CA
CA
1_555
A
GLU
27
A
OE1
GLU
27
1_555
103.0
A
GLU
17
A
OE2
GLU
17
1_555
A
CA
76
B
CA
CA
1_555
A
GLU
27
A
OE1
GLU
27
1_555
94.0
A
ASP
19
A
O
ASP
19
1_555
A
CA
76
B
CA
CA
1_555
A
GLU
27
A
OE1
GLU
27
1_555
155.6
A
ASP
19
A
OD2
ASP
19
1_555
A
CA
76
B
CA
CA
1_555
A
GLU
27
A
OE1
GLU
27
1_555
136.6
A
GLN
22
A
O
GLN
22
1_555
A
CA
76
B
CA
CA
1_555
A
GLU
27
A
OE1
GLU
27
1_555
73.9
A
GLU
27
A
OE2
GLU
27
1_555
A
CA
76
B
CA
CA
1_555
A
GLU
27
A
OE1
GLU
27
1_555
54.5
A
ASP
54
A
OD2
ASP
54
1_555
A
CA
77
C
CA
CA
1_555
A
ASP
54
A
OD1
ASP
54
1_555
43.0
A
ASP
54
A
OD2
ASP
54
1_555
A
CA
77
C
CA
CA
1_555
A
GLY
57
A
O
GLY
57
1_555
72.2
A
ASP
54
A
OD1
ASP
54
1_555
A
CA
77
C
CA
CA
1_555
A
GLY
57
A
O
GLY
57
1_555
64.9
A
ASP
54
A
OD2
ASP
54
1_555
A
CA
77
C
CA
CA
1_555
A
GLU
60
A
O
GLU
60
1_555
75.1
A
ASP
54
A
OD1
ASP
54
1_555
A
CA
77
C
CA
CA
1_555
A
GLU
60
A
O
GLU
60
1_555
117.1
A
GLY
57
A
O
GLY
57
1_555
A
CA
77
C
CA
CA
1_555
A
GLU
60
A
O
GLU
60
1_555
90.7
A
ASP
54
A
OD2
ASP
54
1_555
A
CA
77
C
CA
CA
1_555
A
GLU
65
A
OE2
GLU
65
1_555
81.4
A
ASP
54
A
OD1
ASP
54
1_555
A
CA
77
C
CA
CA
1_555
A
GLU
65
A
OE2
GLU
65
1_555
73.0
A
GLY
57
A
O
GLY
57
1_555
A
CA
77
C
CA
CA
1_555
A
GLU
65
A
OE2
GLU
65
1_555
137.5
A
GLU
60
A
O
GLU
60
1_555
A
CA
77
C
CA
CA
1_555
A
GLU
65
A
OE2
GLU
65
1_555
114.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
23
A
O
LEU
23
A
N
VAL
61
A
N
VAL
61
1
A
A
GLY
ASP
57
58
61.88
2
A
A
ASP
GLY
58
59
-140.74
3
A
A
GLY
ASP
57
58
-138.83
3
A
A
ASP
GLY
58
59
-134.72
5
A
A
ASP
GLY
58
59
-128.26
7
A
A
GLY
ASP
57
58
-137.61
7
A
A
ASP
GLY
58
59
-131.68
7
A
A
GLY
GLU
59
60
-147.17
8
A
A
GLY
GLU
59
60
-145.18
10
A
A
GLY
GLY
42
43
-149.04
10
A
A
ASP
GLY
58
59
-141.68
10
A
A
GLY
GLU
59
60
-144.61
1
A
PHE
10
0.132
SIDE CHAIN
2
A
PHE
10
0.196
SIDE CHAIN
2
A
PHE
36
0.076
SIDE CHAIN
2
A
PHE
50
0.107
SIDE CHAIN
3
A
PHE
10
0.172
SIDE CHAIN
3
A
TYR
13
0.131
SIDE CHAIN
3
A
PHE
36
0.076
SIDE CHAIN
3
A
PHE
50
0.094
SIDE CHAIN
4
A
PHE
10
0.171
SIDE CHAIN
4
A
TYR
13
0.097
SIDE CHAIN
4
A
PHE
36
0.135
SIDE CHAIN
5
A
PHE
10
0.188
SIDE CHAIN
5
A
PHE
36
0.076
SIDE CHAIN
5
A
PHE
50
0.088
SIDE CHAIN
6
A
PHE
10
0.172
SIDE CHAIN
7
A
PHE
10
0.175
SIDE CHAIN
7
A
PHE
50
0.101
SIDE CHAIN
8
A
PHE
10
0.161
SIDE CHAIN
8
A
PHE
50
0.088
SIDE CHAIN
9
A
PHE
10
0.161
SIDE CHAIN
10
A
PHE
10
0.177
SIDE CHAIN
10
A
TYR
13
0.110
SIDE CHAIN
10
A
PHE
36
0.128
SIDE CHAIN
10
A
PHE
50
0.086
SIDE CHAIN
4
-4.73
0.70
120.80
116.07
A
A
A
CB
CG
CD1
PHE
PHE
PHE
36
36
36
N
1
A
GLU
17
-88.81
-146.98
1
A
SER
44
-35.85
125.67
1
A
ASN
56
-174.49
52.94
1
A
ASP
58
100.22
-30.09
2
A
ASP
19
64.54
142.63
2
A
LEU
40
-67.52
7.81
2
A
ASN
56
-134.76
-42.01
2
A
ASP
58
162.09
65.05
3
A
LYS
41
-72.02
-82.08
3
A
LYS
55
-67.05
0.05
3
A
ASN
56
-153.15
-50.99
3
A
ASP
58
-163.19
6.92
3
A
GLU
60
-74.07
-161.44
4
A
GLU
17
-84.30
-104.70
4
A
ASP
19
57.88
136.60
4
A
SER
44
57.17
95.86
5
A
ASP
19
66.35
101.28
5
A
SER
44
-147.34
-52.07
5
A
LEU
53
-59.82
-70.04
5
A
ASN
56
-153.08
-23.87
5
A
ASP
58
-166.17
20.68
5
A
GLU
60
-83.15
-156.11
6
A
LEU
40
-69.75
63.37
6
A
THR
45
-65.76
-177.10
6
A
ASN
56
-151.91
67.10
6
A
ASP
58
121.29
15.24
7
A
LYS
41
-78.32
49.24
7
A
ASN
56
-142.37
-45.53
7
A
ASP
58
-166.64
-6.11
7
A
GLU
60
-77.72
-162.92
8
A
LEU
40
-73.91
32.02
8
A
SER
44
62.52
-162.78
8
A
ASP
58
141.36
44.52
8
A
GLU
60
-79.50
-163.97
8
A
SER
74
-92.38
42.84
9
A
ASP
19
60.33
133.53
9
A
THR
34
-96.87
-68.43
9
A
LEU
40
-73.90
28.03
9
A
LYS
41
36.74
70.30
9
A
ASP
58
-135.75
-36.07
10
A
ASN
56
-151.15
-31.23
10
A
ASP
58
-177.12
18.68
10
A
GLU
60
-80.85
-157.85
10
A
GLU
64
-27.90
-62.95
SOLVATED REFINEMENT OF CA-LOADED CALBINDIN D9K
1
N
N
2
N
N
2
N
N
A
PRO
3
A
PRO
3
HELX_P
A
ALA
15
A
ALA
15
1
1
13
A
LYS
25
A
LYS
25
HELX_P
A
GLU
35
A
GLU
35
1
2
11
A
LEU
46
A
LEU
46
HELX_P
A
LEU
53
A
LEU
53
1
3
8
A
PHE
63
A
PHE
63
HELX_P
A
LYS
72
A
LYS
72
1
4
10
metalc
2.349
A
ALA
14
A
O
ALA
14
1_555
A
CA
76
B
CA
CA
1_555
metalc
2.265
A
GLU
17
A
OE2
GLU
17
1_555
A
CA
76
B
CA
CA
1_555
metalc
2.688
A
ASP
19
A
O
ASP
19
1_555
A
CA
76
B
CA
CA
1_555
metalc
2.260
A
ASP
19
A
OD2
ASP
19
1_555
A
CA
76
B
CA
CA
1_555
metalc
2.380
A
GLN
22
A
O
GLN
22
1_555
A
CA
76
B
CA
CA
1_555
metalc
2.350
A
GLU
27
A
OE2
GLU
27
1_555
A
CA
76
B
CA
CA
1_555
metalc
2.381
A
GLU
27
A
OE1
GLU
27
1_555
A
CA
76
B
CA
CA
1_555
metalc
2.254
A
ASP
54
A
OD2
ASP
54
1_555
A
CA
77
C
CA
CA
1_555
metalc
3.221
A
ASP
54
A
OD1
ASP
54
1_555
A
CA
77
C
CA
CA
1_555
metalc
2.362
A
GLY
57
A
O
GLY
57
1_555
A
CA
77
C
CA
CA
1_555
metalc
2.357
A
GLU
60
A
O
GLU
60
1_555
A
CA
77
C
CA
CA
1_555
metalc
2.275
A
GLU
65
A
OE2
GLU
65
1_555
A
CA
77
C
CA
CA
1_555
METAL BINDING PROTEIN
CALCIUM-BINDING PROTEIN, METAL BINDING PROTEIN
A
GLY
43
A
GLY
43
5
A
SER
44
A
SER
44
7.27
S100G_BOVIN
UNP
1
P02633
4
78
1B1G
1
75
P02633
A
1
1
75
2
anti-parallel
A
LEU
23
A
LEU
23
A
SER
24
A
SER
24
A
GLU
60
A
GLU
60
A
VAL
61
A
VAL
61
BINDING SITE FOR RESIDUE CA A 76
A
CA
76
Software
5
BINDING SITE FOR RESIDUE CA A 77
A
CA
77
Software
4
A
ALA
14
A
ALA
14
5
1_555
A
GLU
17
A
GLU
17
5
1_555
A
ASP
19
A
ASP
19
5
1_555
A
GLN
22
A
GLN
22
5
1_555
A
GLU
27
A
GLU
27
5
1_555
A
ASP
54
A
ASP
54
4
1_555
A
GLY
57
A
GLY
57
4
1_555
A
GLU
60
A
GLU
60
4
1_555
A
GLU
65
A
GLU
65
4
1_555
1
P 1