1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Bycroft, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
EMBO J.
EMJODG
0897
0261-4189
18
297
305
10.1093/emboj/18.2.297
9889186
The structure of a PKD domain from polycystin-1: implications for polycystic kidney disease.
1999
10.2210/pdb1b4r/pdb
pdb_00001b4r
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
7963.906
PROTEIN (PKD1_HUMAN)
PKD DOMAIN
1
man
polymer
no
no
ATLVGPHGPLASGQLAAFHIAAPLPVTATRWDFGDGSAEVDAAGPAASHRYVLPGRYHVTAVLALGAGSALLGTDVQVEA
ATLVGPHGPLASGQLAAFHIAAPLPVTATRWDFGDGSAEVDAAGPAASHRYVLPGRYHVTAVLALGAGSALLGTDVQVEA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PRSETA
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
1999-01-06
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
BNL
Y
RCSB
1998-12-28
REL
REL
LEAST RESTRAINT VIOLATION
50
20
3.0
298
K
SA
1
BRUNGER
refinement
X-PLOR
3.1
structure solution
XPLOR
500
Bruker
AMX 500
ALA
8
n
1
ALA
8
A
THR
9
n
2
THR
9
A
LEU
10
n
3
LEU
10
A
VAL
11
n
4
VAL
11
A
GLY
12
n
5
GLY
12
A
PRO
13
n
6
PRO
13
A
HIS
14
n
7
HIS
14
A
GLY
15
n
8
GLY
15
A
PRO
16
n
9
PRO
16
A
LEU
17
n
10
LEU
17
A
ALA
18
n
11
ALA
18
A
SER
19
n
12
SER
19
A
GLY
20
n
13
GLY
20
A
GLN
21
n
14
GLN
21
A
LEU
22
n
15
LEU
22
A
ALA
23
n
16
ALA
23
A
ALA
24
n
17
ALA
24
A
PHE
25
n
18
PHE
25
A
HIS
26
n
19
HIS
26
A
ILE
27
n
20
ILE
27
A
ALA
28
n
21
ALA
28
A
ALA
29
n
22
ALA
29
A
PRO
30
n
23
PRO
30
A
LEU
31
n
24
LEU
31
A
PRO
32
n
25
PRO
32
A
VAL
33
n
26
VAL
33
A
THR
34
n
27
THR
34
A
ALA
35
n
28
ALA
35
A
THR
36
n
29
THR
36
A
ARG
37
n
30
ARG
37
A
TRP
38
n
31
TRP
38
A
ASP
39
n
32
ASP
39
A
PHE
40
n
33
PHE
40
A
GLY
41
n
34
GLY
41
A
ASP
42
n
35
ASP
42
A
GLY
43
n
36
GLY
43
A
SER
44
n
37
SER
44
A
ALA
45
n
38
ALA
45
A
GLU
46
n
39
GLU
46
A
VAL
47
n
40
VAL
47
A
ASP
48
n
41
ASP
48
A
ALA
49
n
42
ALA
49
A
ALA
50
n
43
ALA
50
A
GLY
51
n
44
GLY
51
A
PRO
52
n
45
PRO
52
A
ALA
53
n
46
ALA
53
A
ALA
54
n
47
ALA
54
A
SER
55
n
48
SER
55
A
HIS
56
n
49
HIS
56
A
ARG
57
n
50
ARG
57
A
TYR
58
n
51
TYR
58
A
VAL
59
n
52
VAL
59
A
LEU
60
n
53
LEU
60
A
PRO
61
n
54
PRO
61
A
GLY
62
n
55
GLY
62
A
ARG
63
n
56
ARG
63
A
TYR
64
n
57
TYR
64
A
HIS
65
n
58
HIS
65
A
VAL
66
n
59
VAL
66
A
THR
67
n
60
THR
67
A
ALA
68
n
61
ALA
68
A
VAL
69
n
62
VAL
69
A
LEU
70
n
63
LEU
70
A
ALA
71
n
64
ALA
71
A
LEU
72
n
65
LEU
72
A
GLY
73
n
66
GLY
73
A
ALA
74
n
67
ALA
74
A
GLY
75
n
68
GLY
75
A
SER
76
n
69
SER
76
A
ALA
77
n
70
ALA
77
A
LEU
78
n
71
LEU
78
A
LEU
79
n
72
LEU
79
A
GLY
80
n
73
GLY
80
A
THR
81
n
74
THR
81
A
ASP
82
n
75
ASP
82
A
VAL
83
n
76
VAL
83
A
GLN
84
n
77
GLN
84
A
VAL
85
n
78
VAL
85
A
GLU
86
n
79
GLU
86
A
ALA
87
n
80
ALA
87
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
9
A
O
THR
2
A
N
ALA
28
A
N
ALA
21
A
O
GLN
21
A
O
GLN
14
A
N
TYR
58
A
N
TYR
51
A
O
VAL
47
A
O
VAL
40
A
N
TRP
38
A
N
TRP
31
A
O
ALA
35
A
O
ALA
28
A
N
ALA
71
A
N
ALA
64
A
O
GLY
62
A
O
GLY
55
A
N
VAL
85
A
N
VAL
78
1
A
ARG
37
0.316
SIDE CHAIN
1
A
ARG
57
0.221
SIDE CHAIN
1
A
ARG
63
0.151
SIDE CHAIN
2
A
ARG
37
0.210
SIDE CHAIN
2
A
ARG
57
0.306
SIDE CHAIN
2
A
ARG
63
0.297
SIDE CHAIN
3
A
ARG
37
0.316
SIDE CHAIN
3
A
ARG
57
0.315
SIDE CHAIN
3
A
ARG
63
0.239
SIDE CHAIN
4
A
ARG
37
0.262
SIDE CHAIN
4
A
ARG
57
0.193
SIDE CHAIN
4
A
ARG
63
0.317
SIDE CHAIN
5
A
ARG
37
0.190
SIDE CHAIN
5
A
ARG
57
0.144
SIDE CHAIN
5
A
ARG
63
0.249
SIDE CHAIN
6
A
ARG
37
0.316
SIDE CHAIN
6
A
ARG
57
0.243
SIDE CHAIN
6
A
ARG
63
0.279
SIDE CHAIN
7
A
ARG
37
0.160
SIDE CHAIN
7
A
ARG
57
0.168
SIDE CHAIN
7
A
ARG
63
0.249
SIDE CHAIN
8
A
ARG
37
0.211
SIDE CHAIN
8
A
ARG
57
0.162
SIDE CHAIN
8
A
ARG
63
0.233
SIDE CHAIN
9
A
ARG
37
0.312
SIDE CHAIN
9
A
ARG
57
0.260
SIDE CHAIN
9
A
ARG
63
0.262
SIDE CHAIN
10
A
ARG
37
0.244
SIDE CHAIN
10
A
ARG
57
0.199
SIDE CHAIN
10
A
ARG
63
0.311
SIDE CHAIN
11
A
ARG
37
0.232
SIDE CHAIN
11
A
ARG
57
0.167
SIDE CHAIN
11
A
ARG
63
0.308
SIDE CHAIN
12
A
ARG
37
0.317
SIDE CHAIN
12
A
ARG
57
0.158
SIDE CHAIN
12
A
ARG
63
0.304
SIDE CHAIN
13
A
ARG
37
0.283
SIDE CHAIN
13
A
ARG
57
0.183
SIDE CHAIN
13
A
ARG
63
0.315
SIDE CHAIN
14
A
ARG
37
0.306
SIDE CHAIN
14
A
ARG
57
0.189
SIDE CHAIN
14
A
ARG
63
0.238
SIDE CHAIN
15
A
ARG
37
0.316
SIDE CHAIN
15
A
ARG
57
0.315
SIDE CHAIN
15
A
ARG
63
0.239
SIDE CHAIN
16
A
ARG
37
0.238
SIDE CHAIN
16
A
ARG
57
0.207
SIDE CHAIN
16
A
ARG
63
0.287
SIDE CHAIN
17
A
ARG
37
0.305
SIDE CHAIN
17
A
ARG
57
0.174
SIDE CHAIN
17
A
ARG
63
0.313
SIDE CHAIN
18
A
ARG
57
0.257
SIDE CHAIN
18
A
ARG
63
0.304
SIDE CHAIN
19
A
ARG
37
0.271
SIDE CHAIN
19
A
ARG
57
0.212
SIDE CHAIN
19
A
ARG
63
0.310
SIDE CHAIN
20
A
ARG
37
0.261
SIDE CHAIN
20
A
ARG
57
0.207
SIDE CHAIN
20
A
ARG
63
0.254
SIDE CHAIN
1
A
HIS
14
174.51
164.17
1
A
ALA
29
176.56
-62.26
1
A
LEU
31
-13.13
-64.58
1
A
ASP
42
-98.49
35.70
1
A
ALA
45
-71.20
-90.70
1
A
PRO
52
-88.43
40.09
1
A
ALA
54
-165.88
-168.86
1
A
GLU
86
-110.59
-159.41
2
A
HIS
14
161.94
-36.82
2
A
HIS
26
-172.47
147.61
2
A
ALA
29
172.80
-70.06
2
A
ASP
42
-97.04
33.07
2
A
ALA
45
-75.30
-86.96
2
A
PRO
52
-88.50
38.91
2
A
ALA
54
-165.18
-169.64
2
A
GLU
86
-102.45
-160.98
3
A
HIS
14
168.90
-38.87
3
A
ALA
29
175.25
-61.86
3
A
LEU
31
-15.42
-64.03
3
A
ALA
35
-178.60
149.43
3
A
ALA
45
-71.38
-98.28
3
A
PRO
52
-88.43
42.63
4
A
HIS
14
159.11
-35.63
4
A
ALA
29
172.56
-71.85
4
A
ASP
42
-109.06
-104.71
4
A
ALA
45
-81.20
-85.01
4
A
PRO
52
-88.45
41.75
4
A
GLU
86
-126.58
-154.87
5
A
HIS
14
152.25
175.28
5
A
HIS
26
-174.93
149.52
5
A
ALA
29
170.88
-72.36
5
A
ASP
42
-105.42
-103.32
5
A
ALA
45
-81.49
-85.37
5
A
PRO
52
-88.83
40.79
5
A
ALA
54
-171.59
-167.67
6
A
HIS
14
163.16
-37.50
6
A
ALA
29
169.18
-69.60
6
A
ASP
42
-104.25
-104.48
6
A
ALA
45
-80.74
-85.40
6
A
PRO
52
-88.96
38.99
6
A
ALA
54
-163.61
-166.79
6
A
ALA
74
71.53
-0.38
6
A
GLU
86
-107.66
-157.32
7
A
HIS
14
158.87
-33.98
7
A
HIS
26
-173.95
148.51
7
A
ALA
29
172.31
-71.54
7
A
ASP
42
-98.34
35.60
7
A
ALA
45
-75.58
-89.99
7
A
PRO
52
-88.97
40.99
7
A
ALA
54
-171.55
-167.05
8
A
HIS
14
158.52
-39.78
8
A
HIS
26
-174.30
143.41
8
A
ALA
29
173.30
-68.56
8
A
ASP
42
-105.35
-102.95
8
A
ALA
45
-80.43
-85.91
8
A
PRO
52
-88.93
40.44
8
A
ALA
54
-167.41
-168.34
9
A
HIS
14
163.74
-37.99
9
A
HIS
26
-171.27
144.51
9
A
ALA
29
172.01
-68.24
9
A
ASP
42
-104.35
-103.75
9
A
ALA
45
-81.25
-84.22
9
A
PRO
52
-89.53
40.74
9
A
ALA
54
-168.06
-167.69
9
A
GLU
86
-103.56
-147.97
10
A
HIS
14
165.84
-38.77
10
A
ALA
29
173.43
-68.67
10
A
ASP
42
-98.79
31.15
10
A
ALA
45
-76.21
-89.84
10
A
PRO
52
-89.08
40.14
10
A
ALA
54
-170.64
-171.76
11
A
HIS
14
151.58
170.76
11
A
ALA
29
-178.39
-61.70
11
A
LEU
31
-12.96
-64.32
11
A
ASP
42
-104.63
-105.72
11
A
ALA
45
-81.24
-84.59
11
A
PRO
52
-87.43
41.20
11
A
ALA
54
-160.02
-168.32
12
A
HIS
14
145.74
179.04
12
A
ALA
29
-178.80
-66.00
12
A
LEU
31
-9.93
-66.56
12
A
ASP
42
-98.03
31.47
12
A
ALA
45
-77.98
-88.97
12
A
PRO
52
-87.92
39.75
13
A
HIS
14
161.13
-37.19
13
A
ALA
29
174.24
-68.87
13
A
ASP
42
-101.25
-104.22
13
A
ALA
45
-81.11
-83.91
13
A
PRO
52
-89.77
40.48
13
A
GLU
86
-121.21
-156.61
14
A
HIS
14
150.29
-39.52
14
A
ALA
29
174.05
-71.40
14
A
LEU
31
-13.81
-63.79
14
A
ALA
35
-176.48
139.27
14
A
ASP
42
-95.57
34.97
14
A
ALA
45
-71.49
-95.60
14
A
PRO
52
-88.05
39.33
14
A
GLU
86
-114.14
-162.96
15
A
HIS
14
168.90
-38.87
15
A
ALA
29
175.25
-61.86
15
A
LEU
31
-15.42
-64.03
15
A
ALA
35
-178.60
149.43
15
A
ALA
45
-71.38
-98.28
15
A
PRO
52
-88.43
42.63
16
A
HIS
14
162.61
-36.36
16
A
ALA
29
-179.80
-67.30
16
A
LEU
31
-11.82
-66.21
16
A
ASP
42
-101.06
-103.05
16
A
ALA
45
-81.34
-87.66
16
A
PRO
52
-87.69
41.00
17
A
HIS
14
164.62
171.09
17
A
ALA
29
176.44
-72.10
17
A
ASP
42
-106.96
-104.87
17
A
ALA
45
-81.17
-85.48
17
A
PRO
52
-89.52
39.00
18
A
HIS
14
157.52
-33.86
18
A
ALA
29
-177.72
-66.34
18
A
LEU
31
-8.81
-67.09
18
A
ASP
42
-107.15
-104.52
18
A
ALA
45
-81.36
-86.65
18
A
PRO
52
-88.37
40.03
19
A
HIS
14
174.35
162.01
19
A
SER
19
-56.71
108.52
19
A
ALA
29
179.15
-66.38
19
A
LEU
31
-10.81
-66.52
19
A
ALA
35
-174.20
146.82
19
A
ASP
42
-93.47
-101.72
19
A
ALA
45
-81.30
-85.02
19
A
PRO
52
-86.55
41.60
20
A
HIS
14
166.96
-39.13
20
A
ALA
29
171.45
-69.22
20
A
ASP
42
-102.27
-104.52
20
A
ALA
45
-80.89
-85.96
20
A
PRO
52
-89.06
41.63
PKD DOMAIN 1 FROM HUMAN POLYCYSTEIN-1
1
N
N
MEMBRANE PROTEIN
PKD DOMAIN 1 FROM HUMAN POLYCYSTEIN-1, POLYCYSTIN (PRECURSOR), MEMBRANE PROTEIN
PKD1_HUMAN
UNP
1
P98161
275
354
1B4R
8
87
P98161
A
1
1
80
1
ASP
conflict
ALA
28
1B4R
A
P98161
UNP
302
21
3
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
9
A
THR
2
A
VAL
11
A
VAL
4
A
GLN
21
A
GLN
14
A
ALA
28
A
ALA
21
A
ALA
53
A
ALA
46
A
TYR
58
A
TYR
51
A
GLU
46
A
GLU
39
A
ALA
50
A
ALA
43
A
ALA
35
A
ALA
28
A
ASP
39
A
ASP
32
A
GLY
62
A
GLY
55
A
ALA
71
A
ALA
64
A
SER
76
A
SER
69
A
VAL
85
A
VAL
78
1
P 1