0.019414 0.000000 0.000000 0.000000 0.016958 0.000000 0.000000 0.000000 0.016049 0.00000 0.00000 0.00000 Martin, J.L. Begun, J. Schindeler, A. Wickramasinghe, W.A. Alewood, D. Alewood, P.F. Bergman, D.A. Brinkworth, R.I. Abbenante, G. March, D.R. Reid, R.C. Fairlie, D.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 51.510 58.970 62.310 C4 H9 N O2 103.120 n ALPHA-AMINOBUTYRIC ACID L-peptide linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C37 H53 N5 O7 679.846 N-[3-(8-SEC-BUTYL-7,10-DIOXO-2-OXA-6,9-DIAZA-BICYCLO[11.2.2]HEPTADECA-1(16),13(17),14- TRIEN-11-YLAMINO)-2-HYDROXY-1-(4-HYDROXY-BENZYL)-PROPYL]-3-METHYL-2- (2-OXO-PYRROLIDIN-1-YL)-BUTYRAMIDE MACROCYCLIC PEPTIDOMIMETIC INHIBITOR 5 non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N O N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N H N 15 N H N 16 N H N 17 N N N 18 S C N 19 N C N 20 N O N 21 N C N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N N N 31 S C N 32 N C N 33 N O N 34 N C N 35 N C N 36 N C N 37 N N N 38 N C N 39 N N N 40 N N N 41 N O N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N N N 58 S C N 59 N C N 60 N O N 61 N C N 62 N C N 63 N O N 64 N N N 65 N O N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N O N 81 N O N 82 N O N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N N N 91 R C N 92 N C N 93 N O N 94 N C N 95 N S N 96 N O N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N N N 105 S C N 106 N C N 107 N O N 108 N C N 109 N C N 110 N C N 111 N O N 112 N N N 113 N O N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N N N 125 S C N 126 N C N 127 N O N 128 N C N 129 N C N 130 N C N 131 N O N 132 N O N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N N N 144 N C N 145 N C N 146 N O N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N N N 154 S C N 155 N C N 156 N O N 157 N C Y 158 N C Y 159 N N Y 160 N C Y 161 N C Y 162 N N N 163 N O N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N O N 175 N H N 176 N H N 177 N N N 178 S C N 179 N C N 180 N O N 181 S C N 182 N C N 183 N C N 184 N C N 185 N O N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N N N 200 S C N 201 N C N 202 N O N 203 N C N 204 N C N 205 N C N 206 N C N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N N N 222 S C N 223 N C N 224 N O N 225 N C N 226 N C N 227 N C N 228 N C N 229 N N N 230 N O N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N N N 247 S C N 248 N C N 249 N O N 250 N C N 251 N C N 252 N S N 253 N C N 254 N O N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C Y 271 N C Y 272 N C Y 273 N C Y 274 N C Y 275 N C Y 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N C N 290 N C N 291 N C N 292 N O N 293 N C N 294 N N N 295 S C N 296 N C N 297 N C N 298 N C N 299 N C N 300 N O N 301 N N N 302 S C N 303 N C Y 304 N C Y 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N C N 310 R C N 311 N C N 312 N O N 313 N O N 314 N N N 315 S C N 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C Y 322 N C N 323 N O N 324 N C N 325 N C N 326 N O N 327 N N N 328 S C N 329 N C N 330 N O N 331 S C N 332 N C N 333 N C N 334 N C N 335 N N N 336 N C N 337 N C N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N N N 392 S C N 393 N C N 394 N O N 395 N C N 396 N C N 397 N C N 398 N O N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N S N 409 N O N 410 N O N 411 N O N 412 N O N 413 N N N 414 S C N 415 N C N 416 N O N 417 R C N 418 N O N 419 N C N 420 N O N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N N N 431 S C N 432 N C N 433 N O N 434 N C Y 435 N C Y 436 N C Y 437 N C Y 438 N N Y 439 N C Y 440 N C Y 441 N C Y 442 N C Y 443 N C N 444 N O N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N N N 458 S C N 459 N C N 460 N O N 461 N C Y 462 N C Y 463 N C Y 464 N C Y 465 N C Y 466 N C Y 467 N C N 468 N O N 469 N O N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N N N 482 S C N 483 N C N 484 N O N 485 N C N 486 N C N 487 N C N 488 N O N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N doub N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N doub N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N doub N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N doub N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N doub N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing Y 155 N sing Y 156 N doub Y 157 N doub N 158 N sing Y 159 N sing N 160 N sing Y 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N doub N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing Y 263 N doub Y 264 N sing Y 265 N sing N 266 N sing Y 267 N doub N 268 N sing Y 269 N doub N 270 N sing Y 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing Y 310 N doub Y 311 N sing Y 312 N sing N 313 N sing Y 314 N doub N 315 N sing Y 316 N doub N 317 N sing Y 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing Y 337 N sing Y 338 N doub Y 339 N doub N 340 N sing Y 341 N sing N 342 N sing Y 343 N sing N 344 N sing Y 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N doub N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N doub N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N doub N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N doub N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N doub N 424 N sing N 425 N sing N 426 N sing N 427 N sing Y 428 N doub Y 429 N sing Y 430 N sing N 431 N sing Y 432 N doub Y 433 N sing Y 434 N sing N 435 N sing Y 436 N sing Y 437 N doub N 438 N sing Y 439 N doub N 440 N sing Y 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N doub N 452 N sing N 453 N sing N 454 N sing N 455 N sing Y 456 N doub Y 457 N sing Y 458 N sing N 459 N sing Y 460 N doub N 461 N sing Y 462 N doub N 463 N sing Y 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N doub N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing US Biochemistry BICHAW 0033 0006-2960 38 7978 7988 10.1021/bi990174x 10387041 Molecular recognition of macrocyclic peptidomimetic inhibitors by HIV-1 protease. 1999 10.2210/pdb1b6k/pdb pdb_00001b6k 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 289 1 YALE MIRRORS IMAGE PLATE 1995-06-01 RIGAKU RAXIS IIC NI FILTER SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 10765.687 RETROPEPSIN 3.4.23.16 GLN7LYS, LEU33ILE, CYS67ABA, CYS95ABA, GLN107LYS, LEU133ILE, CYS167ABA, CYS195ABA 2 nat polymer 96.063 SULFATE ION 3 syn non-polymer 679.846 N-[3-(8-SEC-BUTYL-7,10-DIOXO-2-OXA-6,9-DIAZA-BICYCLO[11.2.2]HEPTADECA-1(16),13(17),14- TRIEN-11-YLAMINO)-2-HYDROXY-1-(4-HYDROXY-BENZYL)-PROPYL]-3-METHYL-2- (2-OXO-PYRROLIDIN-1-YL)-BUTYRAMIDE 1 syn non-polymer 18.015 water 95 nat water HIV-1 PR no yes PQITLWKRPLVTIRIGGQLKEALLDTGADDTVIEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPVEI(ABA)GHKAIGTVL VGPTPVNIIGRNLLTQIG(ABA)TLNF PQITLWKRPLVTIRIGGQLKEALLDTGADDTVIEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPVEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n CYS RESIDUES REPLACED WITH ABA Lentivirus sample 11676 Human immunodeficiency virus 1 1 2.20 43.99 5.5 0.1 M ACETATE BUFFER PH 5.5 AND 30-60% AMMONIUM SULFATE chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description Data collection 1 0 2000-01-07 1 1 2008-04-26 1 2 2011-07-13 1 3 2023-08-09 1 4 2023-11-15 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 HIV-1 PROTEASE COMPLEXED WITH MACROCYCLIC PEPTIDOMIMETIC INHIBITOR 1 HIV-1 PROTEASE COMPLEXED WITH MACROCYCLIC PEPTIDOMIMETIC INHIBITOR 4 HIV-1 PROTEASE COMPLEXED WITH MACROCYCLIC PEPTIDOMIMETIC INHIBITOR 6 HIV-1 PROTEASE COMPLEXED WITH MACROCYCLIC PEPTIDOMIMETIC INHIBITOR 3 HIV-1 PROTEASE COMPLEXED WITH MACROCYCLIC PEPTIDOMIMETIC INHIBITOR 2 HIV-1 PROTEASE COMPLEXED WITH MACROCYCLIC PEPTIDOMIMETIC INHIBITOR 7 BNL Y RCSB 1999-01-17 REL REL SO4 SULFATE ION PI5 N-[3-(8-SEC-BUTYL-7,10-DIOXO-2-OXA-6,9-DIAZA-BICYCLO[11.2.2]HEPTADECA-1(16),13(17),14- TRIEN-11-YLAMINO)-2-HYDROXY-1-(4-HYDROXY-BENZYL)-PROPYL]-3-METHYL-2- (2-OXO-PYRROLIDIN-1-YL)-BUTYRAMIDE HOH water 1CPI PDB ENTRY 1CPI PDB experimental model SO4 502 2 SO4 SO4 502 A SO4 503 2 SO4 SO4 503 A PI5 201 3 PI5 PI5 201 A SO4 501 2 SO4 SO4 501 B HOH 301 4 HOH HOH 301 A HOH 304 4 HOH HOH 304 A HOH 305 4 HOH HOH 305 A HOH 307 4 HOH HOH 307 A HOH 308 4 HOH HOH 308 A HOH 309 4 HOH HOH 309 A HOH 310 4 HOH HOH 310 A HOH 311 4 HOH HOH 311 A HOH 312 4 HOH HOH 312 A HOH 313 4 HOH HOH 313 A HOH 314 4 HOH HOH 314 A HOH 315 4 HOH HOH 315 A HOH 316 4 HOH HOH 316 A HOH 317 4 HOH HOH 317 A HOH 321 4 HOH HOH 321 A HOH 325 4 HOH HOH 325 A HOH 330 4 HOH HOH 330 A HOH 331 4 HOH HOH 331 A HOH 333 4 HOH HOH 333 A HOH 336 4 HOH HOH 336 A HOH 338 4 HOH HOH 338 A HOH 340 4 HOH HOH 340 A HOH 341 4 HOH HOH 341 A HOH 342 4 HOH HOH 342 A HOH 343 4 HOH HOH 343 A HOH 347 4 HOH HOH 347 A HOH 348 4 HOH HOH 348 A HOH 350 4 HOH HOH 350 A HOH 352 4 HOH HOH 352 A HOH 355 4 HOH HOH 355 A HOH 357 4 HOH HOH 357 A HOH 358 4 HOH HOH 358 A HOH 360 4 HOH HOH 360 A HOH 362 4 HOH HOH 362 A HOH 365 4 HOH HOH 365 A HOH 367 4 HOH HOH 367 A HOH 368 4 HOH HOH 368 A HOH 369 4 HOH HOH 369 A HOH 370 4 HOH HOH 370 A HOH 372 4 HOH HOH 372 A HOH 373 4 HOH HOH 373 A HOH 381 4 HOH HOH 381 A HOH 382 4 HOH HOH 382 A HOH 383 4 HOH HOH 383 A HOH 386 4 HOH HOH 386 A HOH 390 4 HOH HOH 390 A HOH 391 4 HOH HOH 391 A HOH 394 4 HOH HOH 394 A HOH 395 4 HOH HOH 395 A HOH 302 4 HOH HOH 302 B HOH 303 4 HOH HOH 303 B HOH 306 4 HOH HOH 306 B HOH 318 4 HOH HOH 318 B HOH 319 4 HOH HOH 319 B HOH 320 4 HOH HOH 320 B HOH 322 4 HOH HOH 322 B HOH 323 4 HOH HOH 323 B HOH 324 4 HOH HOH 324 B HOH 326 4 HOH HOH 326 B HOH 327 4 HOH HOH 327 B HOH 328 4 HOH HOH 328 B HOH 329 4 HOH HOH 329 B HOH 332 4 HOH HOH 332 B HOH 334 4 HOH HOH 334 B HOH 335 4 HOH HOH 335 B HOH 337 4 HOH HOH 337 B HOH 339 4 HOH HOH 339 B HOH 344 4 HOH HOH 344 B HOH 345 4 HOH HOH 345 B HOH 346 4 HOH HOH 346 B HOH 349 4 HOH HOH 349 B HOH 351 4 HOH HOH 351 B HOH 353 4 HOH HOH 353 B HOH 354 4 HOH HOH 354 B HOH 356 4 HOH HOH 356 B HOH 359 4 HOH HOH 359 B HOH 361 4 HOH HOH 361 B HOH 363 4 HOH HOH 363 B HOH 364 4 HOH HOH 364 B HOH 366 4 HOH HOH 366 B HOH 371 4 HOH HOH 371 B HOH 374 4 HOH HOH 374 B HOH 375 4 HOH HOH 375 B HOH 376 4 HOH HOH 376 B HOH 377 4 HOH HOH 377 B HOH 378 4 HOH HOH 378 B HOH 379 4 HOH HOH 379 B HOH 380 4 HOH HOH 380 B HOH 384 4 HOH HOH 384 B HOH 385 4 HOH HOH 385 B HOH 387 4 HOH HOH 387 B HOH 388 4 HOH HOH 388 B HOH 389 4 HOH HOH 389 B HOH 392 4 HOH HOH 392 B HOH 393 4 HOH HOH 393 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A LYS 7 n 7 LYS 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A ARG 14 n 14 ARG 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A ILE 33 n 33 ILE 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A ASN 37 n 37 ASN 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A LYS 41 n 41 LYS 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A PRO 63 n 63 PRO 63 A VAL 64 n 64 VAL 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A ABA 67 n 67 ABA 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A ABA 95 n 95 ABA 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 101 n 1 PRO 101 B GLN 102 n 2 GLN 102 B ILE 103 n 3 ILE 103 B THR 104 n 4 THR 104 B LEU 105 n 5 LEU 105 B TRP 106 n 6 TRP 106 B LYS 107 n 7 LYS 107 B ARG 108 n 8 ARG 108 B PRO 109 n 9 PRO 109 B LEU 110 n 10 LEU 110 B VAL 111 n 11 VAL 111 B THR 112 n 12 THR 112 B ILE 113 n 13 ILE 113 B ARG 114 n 14 ARG 114 B ILE 115 n 15 ILE 115 B GLY 116 n 16 GLY 116 B GLY 117 n 17 GLY 117 B GLN 118 n 18 GLN 118 B LEU 119 n 19 LEU 119 B LYS 120 n 20 LYS 120 B GLU 121 n 21 GLU 121 B ALA 122 n 22 ALA 122 B LEU 123 n 23 LEU 123 B LEU 124 n 24 LEU 124 B ASP 125 n 25 ASP 125 B THR 126 n 26 THR 126 B GLY 127 n 27 GLY 127 B ALA 128 n 28 ALA 128 B ASP 129 n 29 ASP 129 B ASP 130 n 30 ASP 130 B THR 131 n 31 THR 131 B VAL 132 n 32 VAL 132 B ILE 133 n 33 ILE 133 B GLU 134 n 34 GLU 134 B GLU 135 n 35 GLU 135 B MET 136 n 36 MET 136 B ASN 137 n 37 ASN 137 B LEU 138 n 38 LEU 138 B PRO 139 n 39 PRO 139 B GLY 140 n 40 GLY 140 B LYS 141 n 41 LYS 141 B TRP 142 n 42 TRP 142 B LYS 143 n 43 LYS 143 B PRO 144 n 44 PRO 144 B LYS 145 n 45 LYS 145 B MET 146 n 46 MET 146 B ILE 147 n 47 ILE 147 B GLY 148 n 48 GLY 148 B GLY 149 n 49 GLY 149 B ILE 150 n 50 ILE 150 B GLY 151 n 51 GLY 151 B GLY 152 n 52 GLY 152 B PHE 153 n 53 PHE 153 B ILE 154 n 54 ILE 154 B LYS 155 n 55 LYS 155 B VAL 156 n 56 VAL 156 B ARG 157 n 57 ARG 157 B GLN 158 n 58 GLN 158 B TYR 159 n 59 TYR 159 B ASP 160 n 60 ASP 160 B GLN 161 n 61 GLN 161 B ILE 162 n 62 ILE 162 B PRO 163 n 63 PRO 163 B VAL 164 n 64 VAL 164 B GLU 165 n 65 GLU 165 B ILE 166 n 66 ILE 166 B ABA 167 n 67 ABA 167 B GLY 168 n 68 GLY 168 B HIS 169 n 69 HIS 169 B LYS 170 n 70 LYS 170 B ALA 171 n 71 ALA 171 B ILE 172 n 72 ILE 172 B GLY 173 n 73 GLY 173 B THR 174 n 74 THR 174 B VAL 175 n 75 VAL 175 B LEU 176 n 76 LEU 176 B VAL 177 n 77 VAL 177 B GLY 178 n 78 GLY 178 B PRO 179 n 79 PRO 179 B THR 180 n 80 THR 180 B PRO 181 n 81 PRO 181 B VAL 182 n 82 VAL 182 B ASN 183 n 83 ASN 183 B ILE 184 n 84 ILE 184 B ILE 185 n 85 ILE 185 B GLY 186 n 86 GLY 186 B ARG 187 n 87 ARG 187 B ASN 188 n 88 ASN 188 B LEU 189 n 89 LEU 189 B LEU 190 n 90 LEU 190 B THR 191 n 91 THR 191 B GLN 192 n 92 GLN 192 B ILE 193 n 93 ILE 193 B GLY 194 n 94 GLY 194 B ABA 195 n 95 ABA 195 B THR 196 n 96 THR 196 B LEU 197 n 97 LEU 197 B ASN 198 n 98 ASN 198 B PHE 199 n 99 PHE 199 B author_and_software_defined_assembly PISA 2 dimeric 5610 -59 9040 A ABA 67 ALPHA-AMINOBUTYRIC ACID A ABA 67 ALA A ABA 95 ALPHA-AMINOBUTYRIC ACID A ABA 95 ALA B ABA 167 ALPHA-AMINOBUTYRIC ACID B ABA 67 ALA B ABA 195 ALPHA-AMINOBUTYRIC ACID B ABA 95 ALA 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 197 B O LEU 97 B O ASN 198 B O ASN 98 A N THR 96 A N THR 96 A O LEU 97 A O LEU 97 B N ILE 103 B N ILE 3 1 A CG LYS 7 A CG LYS 7 1 Y 1 A CD LYS 7 A CD LYS 7 1 Y 1 A CE LYS 7 A CE LYS 7 1 Y 1 A NZ LYS 7 A NZ LYS 7 1 Y 1 A CG ASN 37 A CG ASN 37 1 Y 1 A OD1 ASN 37 A OD1 ASN 37 1 Y 1 A ND2 ASN 37 A ND2 ASN 37 1 Y 1 A CG LYS 41 A CG LYS 41 1 Y 1 A CD LYS 41 A CD LYS 41 1 Y 1 A CE LYS 41 A CE LYS 41 1 Y 1 A NZ LYS 41 A NZ LYS 41 1 Y 1 A CG LYS 43 A CG LYS 43 1 Y 1 A CD LYS 43 A CD LYS 43 1 Y 1 A CE LYS 43 A CE LYS 43 1 Y 1 A NZ LYS 43 A NZ LYS 43 1 Y 1 A CG LYS 45 A CG LYS 45 1 Y 1 A CD LYS 45 A CD LYS 45 1 Y 1 A CE LYS 45 A CE LYS 45 1 Y 1 A NZ LYS 45 A NZ LYS 45 1 Y 1 A CG LYS 55 A CG LYS 55 1 Y 1 A CD LYS 55 A CD LYS 55 1 Y 1 A CE LYS 55 A CE LYS 55 1 Y 1 A NZ LYS 55 A NZ LYS 55 1 Y 1 A CG LYS 70 A CG LYS 70 1 Y 1 A CD LYS 70 A CD LYS 70 1 Y 1 A CE LYS 70 A CE LYS 70 1 Y 1 A NZ LYS 70 A NZ LYS 70 1 Y 1 B CG ASN 137 B CG ASN 37 1 Y 1 B OD1 ASN 137 B OD1 ASN 37 1 Y 1 B ND2 ASN 137 B ND2 ASN 37 1 Y 1 B CG LYS 141 B CG LYS 41 1 Y 1 B CD LYS 141 B CD LYS 41 1 Y 1 B CE LYS 141 B CE LYS 41 1 Y 1 B NZ LYS 141 B NZ LYS 41 1 Y 1 B CG LYS 143 B CG LYS 43 1 Y 1 B CD LYS 143 B CD LYS 43 1 Y 1 B CE LYS 143 B CE LYS 43 1 Y 1 B NZ LYS 143 B NZ LYS 43 1 Y 1 -11.04 1.60 110.90 99.86 B B B CG1 CB CG2 VAL VAL VAL 182 182 182 A A A N 1 -108.65 1.60 110.90 2.25 B B B CG1 CB CG2 VAL VAL VAL 182 182 182 B B B N PARHCSDXJA11R.PRO TOPHCSDXJA11R.PRO PARAM19.SOL TOPH19.SOL INHIBTOP.INP 16.8 0.00 0.00 0.00 0.00 0.00 0.00 0.2390000 0.006 0.2090000 1.85 8.00 1528 15126 10.1 91.6 RANDOM 10000000.00 0.00100 1 RESTRAINED THROUGHOUT 0.0 OTHER PDB ENTRY 1CPI 0.24 0.21 5.00 0.26 0.25 1.85 8.00 95 1674 64 0 1515 0.006 1.3 27.0 1.16 1.15 1.50 1.76 2.00 1.97 2.00 3.11 2.50 0.3120000 0.021 0.2920000 1.96 217 2014 6 9.7 82.3 4.5 1.85 50.0 1B6K 15429 1.0 0.065 1 10.7 3.0 92 1.85 1.92 2.7 0.276 81 model building X-PLOR refinement X-PLOR 3.851 data reduction DENZO data scaling SCALEPACK phasing X-PLOR HIV-1 PROTEASE COMPLEXED WITH MACROCYCLIC PEPTIDOMIMETIC INHIBITOR 5 1 N N 1 N N 2 N N 2 N N 3 N N 2 N N 4 N N 4 N N A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 1 6 B GLY 186 B GLY 86 HELX_P B THR 191 B THR 91 1 2 6 covale 1.327 both A ILE 66 A C ILE 66 1_555 A ABA 67 A N ABA 67 1_555 covale 1.330 both A ABA 67 A C ABA 67 1_555 A GLY 68 A N GLY 68 1_555 covale 1.328 both A GLY 94 A C GLY 94 1_555 A ABA 95 A N ABA 95 1_555 covale 1.328 both A ABA 95 A C ABA 95 1_555 A THR 96 A N THR 96 1_555 covale 1.331 both B ILE 166 B C ILE 66 1_555 B ABA 167 B N ABA 67 1_555 covale 1.331 both B ABA 167 B C ABA 67 1_555 B GLY 168 B N GLY 68 1_555 covale 1.331 both B GLY 194 B C GLY 94 1_555 B ABA 195 B N ABA 95 1_555 covale 1.332 both B ABA 195 B C ABA 95 1_555 B THR 196 B N THR 96 1_555 HYDROLASE/HYDROLASE INHIBITOR COMPLEX (ACID PROTEINASE-PEPTIDE), HYDROLASE-HYDROLASE INHIBITOR COMPLEX POL_HV1A2 UNP 1 P03369 57 155 1B6K 1 99 P03369 A 1 1 99 57 155 1B6K 101 199 P03369 B 1 1 99 1 CYS SEE REMARK 999 ABA 67 1B6K A P03369 UNP 123 67 1 CYS SEE REMARK 999 ABA 95 1B6K A P03369 UNP 151 95 2 CYS SEE REMARK 999 ABA 167 1B6K B P03369 UNP 123 67 2 CYS SEE REMARK 999 ABA 195 1B6K B P03369 UNP 151 95 1 LEU SEE REMARK 999 ILE 33 1B6K A P03369 UNP 89 33 2 GLN SEE REMARK 999 LYS 107 1B6K B P03369 UNP 63 7 2 LEU SEE REMARK 999 ILE 133 1B6K B P03369 UNP 89 33 4 anti-parallel anti-parallel anti-parallel A GLN 2 A GLN 2 A THR 4 A THR 4 B THR 196 B THR 96 B ASN 198 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 102 B GLN 2 B THR 104 B THR 4 BINDING SITE FOR RESIDUE SO4 B 501 B SO4 501 Software 7 BINDING SITE FOR RESIDUE SO4 A 502 A SO4 502 Software 4 BINDING SITE FOR RESIDUE SO4 A 503 A SO4 503 Software 6 BINDING SITE FOR RESIDUE PI5 A 201 A PI5 201 Software 18 A GLY 68 A GLY 68 7 3_545 A HIS 69 A HIS 69 7 3_545 A LYS 70 A LYS 70 7 3_545 B PRO 101 B PRO 1 7 2_554 B LYS 155 B LYS 55 7 1_555 B HOH 384 H HOH 7 1_555 B HOH 389 H HOH 7 1_555 A PRO 1 A PRO 1 4 1_555 A ARG 57 A ARG 57 4 2_455 A HIS 69 A HIS 69 4 1_555 A HOH 391 G HOH 4 1_555 A ARG 14 A ARG 14 6 1_555 A HOH 357 G HOH 6 1_555 B ARG 114 B ARG 14 6 1_455 B GLY 116 B GLY 16 6 1_455 B GLY 117 B GLY 17 6 1_455 B HOH 392 H HOH 6 1_455 A ASP 25 A ASP 25 18 1_555 A GLY 27 A GLY 27 18 1_555 A ALA 28 A ALA 28 18 1_555 A ASP 29 A ASP 29 18 1_555 A GLY 48 A GLY 48 18 1_555 A GLY 49 A GLY 49 18 1_555 A PRO 81 A PRO 81 18 1_555 A HOH 301 G HOH 18 1_555 A HOH 317 G HOH 18 1_555 A HOH 382 G HOH 18 1_555 A HOH 395 G HOH 18 1_555 B ARG 108 B ARG 8 18 1_555 B ASP 125 B ASP 25 18 1_555 B GLY 127 B GLY 27 18 1_555 B ALA 128 B ALA 28 18 1_555 B ASP 129 B ASP 29 18 1_555 B GLY 148 B GLY 48 18 1_555 B ILE 184 B ILE 84 18 1_555 19 P 21 21 21