0.013839
0.007990
0.000000
0.000000
0.015980
0.000000
0.000000
0.000000
0.015244
0.00000
0.00000
0.00000
Greenwald, J.
Le, V.
Butler, S.L.
Bushman, F.D.
Choe, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
72.260
72.260
65.600
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 As O2 -1
136.989
CACODYLATE ION
dimethylarsinate
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
AS
N
75
N
O
N
76
N
O
N
77
N
C
N
78
N
C
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
N
N
86
R
C
N
87
N
C
N
88
N
O
N
89
N
C
N
90
N
S
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
N
N
100
S
C
N
101
N
C
N
102
N
O
N
103
N
C
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
N
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
N
N
120
S
C
N
121
N
C
N
122
N
O
N
123
N
C
N
124
N
C
N
125
N
C
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
N
C
N
140
N
C
N
141
N
O
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
N
C
Y
153
N
C
Y
154
N
N
Y
155
N
C
Y
156
N
C
Y
157
N
N
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
N
N
173
S
C
N
174
N
C
N
175
N
O
N
176
S
C
N
177
N
C
N
178
N
C
N
179
N
C
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
N
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
N
C
N
246
N
C
N
247
N
S
N
248
N
C
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
N
306
N
O
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
S
N
316
N
O
N
317
N
O
N
318
N
O
N
319
N
O
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
R
C
N
325
N
O
N
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
N
Y
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
N
375
N
O
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
N
393
N
C
N
394
N
C
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
Y
150
N
sing
Y
151
N
doub
Y
152
N
doub
N
153
N
sing
Y
154
N
sing
N
155
N
sing
Y
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
Y
258
N
doub
Y
259
N
sing
Y
260
N
sing
N
261
N
sing
Y
262
N
doub
N
263
N
sing
Y
264
N
doub
N
265
N
sing
Y
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
Y
331
N
doub
Y
332
N
sing
Y
333
N
sing
N
334
N
sing
Y
335
N
doub
Y
336
N
sing
Y
337
N
sing
N
338
N
sing
Y
339
N
sing
Y
340
N
doub
N
341
N
sing
Y
342
N
doub
N
343
N
sing
Y
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
Y
359
N
doub
Y
360
N
sing
Y
361
N
sing
N
362
N
sing
Y
363
N
doub
N
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
doub
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
38
8892
8898
10.1021/bi9907173
10413462
The mobility of an HIV-1 integrase active site loop is correlated with catalytic activity.
1999
10.2210/pdb1b92/pdb
pdb_00001b92
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1998-05
MACSCIENCE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
MACSCIENCE
17926.506
PROTEIN (INTEGRASE)
2.7.7.49
CATALYTIC CORE DOMAIN
F185K, G149A
1
man
polymer
136.989
CACODYLATE ION
2
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
100
nat
water
E.C.2.7.7.49
no
no
MHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAA
CWWAGIKQEFGIPYNPQSQAVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDIQ
TKE
MHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAA
CWWAGIKQEFGIPYNPQSQAVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDIQ
TKE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
1
Escherichia
Escherichia coli
sample
11676
Human immunodeficiency virus
CYTOPLASM
469008
Escherichia coli BL21(DE3)
BL21
DE3
PET28
1
2.76
55.39
6.5
pH 6.5
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Derived calculations
Source and taxonomy
Version format compliance
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
1999-07-19
1
1
2007-10-16
1
2
2011-07-13
1
3
2018-03-14
1
4
2023-08-09
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
RCSB
1999-02-19
REL
CAC
CACODYLATE ION
SO4
SULFATE ION
HOH
water
THE CAC RESIDUE IS A MODIFIED CACODYLATE
WHERE THE SULFUR OF A CYS RESIDUE HAS
REPLACED THE OH OF CACODYLIC ACID.
PDB SEQUENCE IS SINGLE DOMAIN OF
POL_HV1N5 ENTRY. THERE ARE ALSO TWO
POINT MUTATIONS OF F185K, G149A
1B9D
PDB
experimental model
CAC
300
2
CAC
CAC
300
A
CAC
400
2
CAC
CAC
400
A
SUL
1
3
SO4
SO4
1
A
HOH
1
4
HOH
HOH
401
A
HOH
2
4
HOH
HOH
402
A
HOH
3
4
HOH
HOH
403
A
HOH
4
4
HOH
HOH
404
A
HOH
5
4
HOH
HOH
405
A
HOH
6
4
HOH
HOH
406
A
HOH
7
4
HOH
HOH
407
A
HOH
8
4
HOH
HOH
408
A
HOH
9
4
HOH
HOH
409
A
HOH
10
4
HOH
HOH
410
A
HOH
11
4
HOH
HOH
411
A
HOH
12
4
HOH
HOH
412
A
HOH
13
4
HOH
HOH
413
A
HOH
14
4
HOH
HOH
414
A
HOH
15
4
HOH
HOH
415
A
HOH
16
4
HOH
HOH
416
A
HOH
17
4
HOH
HOH
417
A
HOH
18
4
HOH
HOH
418
A
HOH
19
4
HOH
HOH
419
A
HOH
20
4
HOH
HOH
420
A
HOH
21
4
HOH
HOH
421
A
HOH
22
4
HOH
HOH
422
A
HOH
23
4
HOH
HOH
423
A
HOH
24
4
HOH
HOH
424
A
HOH
25
4
HOH
HOH
425
A
HOH
26
4
HOH
HOH
426
A
HOH
27
4
HOH
HOH
427
A
HOH
28
4
HOH
HOH
428
A
HOH
29
4
HOH
HOH
429
A
HOH
30
4
HOH
HOH
430
A
HOH
31
4
HOH
HOH
431
A
HOH
32
4
HOH
HOH
432
A
HOH
33
4
HOH
HOH
433
A
HOH
34
4
HOH
HOH
434
A
HOH
35
4
HOH
HOH
435
A
HOH
36
4
HOH
HOH
436
A
HOH
37
4
HOH
HOH
437
A
HOH
38
4
HOH
HOH
438
A
HOH
39
4
HOH
HOH
439
A
HOH
40
4
HOH
HOH
440
A
HOH
41
4
HOH
HOH
441
A
HOH
42
4
HOH
HOH
442
A
HOH
43
4
HOH
HOH
443
A
HOH
44
4
HOH
HOH
444
A
HOH
45
4
HOH
HOH
445
A
HOH
46
4
HOH
HOH
446
A
HOH
47
4
HOH
HOH
447
A
HOH
48
4
HOH
HOH
448
A
HOH
49
4
HOH
HOH
449
A
HOH
50
4
HOH
HOH
450
A
HOH
51
4
HOH
HOH
451
A
HOH
52
4
HOH
HOH
452
A
HOH
53
4
HOH
HOH
453
A
HOH
54
4
HOH
HOH
454
A
HOH
55
4
HOH
HOH
455
A
HOH
56
4
HOH
HOH
456
A
HOH
57
4
HOH
HOH
457
A
HOH
58
4
HOH
HOH
458
A
HOH
59
4
HOH
HOH
459
A
HOH
60
4
HOH
HOH
460
A
HOH
61
4
HOH
HOH
461
A
HOH
62
4
HOH
HOH
462
A
HOH
63
4
HOH
HOH
463
A
HOH
64
4
HOH
HOH
464
A
HOH
65
4
HOH
HOH
465
A
HOH
66
4
HOH
HOH
466
A
HOH
67
4
HOH
HOH
467
A
HOH
68
4
HOH
HOH
468
A
HOH
69
4
HOH
HOH
469
A
HOH
70
4
HOH
HOH
470
A
HOH
71
4
HOH
HOH
471
A
HOH
72
4
HOH
HOH
472
A
HOH
73
4
HOH
HOH
473
A
HOH
74
4
HOH
HOH
474
A
HOH
75
4
HOH
HOH
475
A
HOH
76
4
HOH
HOH
476
A
HOH
77
4
HOH
HOH
477
A
HOH
78
4
HOH
HOH
478
A
HOH
79
4
HOH
HOH
479
A
HOH
80
4
HOH
HOH
480
A
HOH
81
4
HOH
HOH
481
A
HOH
82
4
HOH
HOH
482
A
HOH
83
4
HOH
HOH
483
A
HOH
84
4
HOH
HOH
484
A
HOH
85
4
HOH
HOH
485
A
HOH
86
4
HOH
HOH
486
A
HOH
87
4
HOH
HOH
487
A
HOH
88
4
HOH
HOH
488
A
HOH
89
4
HOH
HOH
489
A
HOH
90
4
HOH
HOH
490
A
HOH
91
4
HOH
HOH
491
A
HOH
92
4
HOH
HOH
492
A
HOH
93
4
HOH
HOH
493
A
HOH
94
4
HOH
HOH
494
A
HOH
95
4
HOH
HOH
495
A
HOH
96
4
HOH
HOH
496
A
HOH
97
4
HOH
HOH
497
A
HOH
98
4
HOH
HOH
498
A
HOH
99
4
HOH
HOH
499
A
HOH
100
4
HOH
HOH
500
A
n
1
50
A
n
2
51
A
n
3
52
A
n
4
53
A
n
5
54
A
n
6
55
A
CYS
56
n
7
CYS
56
A
SER
57
n
8
SER
57
A
PRO
58
n
9
PRO
58
A
GLY
59
n
10
GLY
59
A
ILE
60
n
11
ILE
60
A
TRP
61
n
12
TRP
61
A
GLN
62
n
13
GLN
62
A
LEU
63
n
14
LEU
63
A
ASP
64
n
15
ASP
64
A
CYS
65
n
16
CYS
65
A
THR
66
n
17
THR
66
A
HIS
67
n
18
HIS
67
A
LEU
68
n
19
LEU
68
A
GLU
69
n
20
GLU
69
A
GLY
70
n
21
GLY
70
A
LYS
71
n
22
LYS
71
A
VAL
72
n
23
VAL
72
A
ILE
73
n
24
ILE
73
A
LEU
74
n
25
LEU
74
A
VAL
75
n
26
VAL
75
A
ALA
76
n
27
ALA
76
A
VAL
77
n
28
VAL
77
A
HIS
78
n
29
HIS
78
A
VAL
79
n
30
VAL
79
A
ALA
80
n
31
ALA
80
A
SER
81
n
32
SER
81
A
GLY
82
n
33
GLY
82
A
TYR
83
n
34
TYR
83
A
ILE
84
n
35
ILE
84
A
GLU
85
n
36
GLU
85
A
ALA
86
n
37
ALA
86
A
GLU
87
n
38
GLU
87
A
VAL
88
n
39
VAL
88
A
ILE
89
n
40
ILE
89
A
PRO
90
n
41
PRO
90
A
ALA
91
n
42
ALA
91
A
GLU
92
n
43
GLU
92
A
THR
93
n
44
THR
93
A
GLY
94
n
45
GLY
94
A
GLN
95
n
46
GLN
95
A
GLU
96
n
47
GLU
96
A
THR
97
n
48
THR
97
A
ALA
98
n
49
ALA
98
A
TYR
99
n
50
TYR
99
A
PHE
100
n
51
PHE
100
A
LEU
101
n
52
LEU
101
A
LEU
102
n
53
LEU
102
A
LYS
103
n
54
LYS
103
A
LEU
104
n
55
LEU
104
A
ALA
105
n
56
ALA
105
A
GLY
106
n
57
GLY
106
A
ARG
107
n
58
ARG
107
A
TRP
108
n
59
TRP
108
A
PRO
109
n
60
PRO
109
A
VAL
110
n
61
VAL
110
A
LYS
111
n
62
LYS
111
A
THR
112
n
63
THR
112
A
VAL
113
n
64
VAL
113
A
HIS
114
n
65
HIS
114
A
THR
115
n
66
THR
115
A
ASP
116
n
67
ASP
116
A
ASN
117
n
68
ASN
117
A
GLY
118
n
69
GLY
118
A
SER
119
n
70
SER
119
A
ASN
120
n
71
ASN
120
A
PHE
121
n
72
PHE
121
A
THR
122
n
73
THR
122
A
SER
123
n
74
SER
123
A
THR
124
n
75
THR
124
A
THR
125
n
76
THR
125
A
VAL
126
n
77
VAL
126
A
LYS
127
n
78
LYS
127
A
ALA
128
n
79
ALA
128
A
ALA
129
n
80
ALA
129
A
CYS
130
n
81
CYS
130
A
TRP
131
n
82
TRP
131
A
TRP
132
n
83
TRP
132
A
ALA
133
n
84
ALA
133
A
GLY
134
n
85
GLY
134
A
ILE
135
n
86
ILE
135
A
LYS
136
n
87
LYS
136
A
GLN
137
n
88
GLN
137
A
GLU
138
n
89
GLU
138
A
PHE
139
n
90
PHE
139
A
GLY
140
n
91
GLY
140
A
n
92
141
A
n
93
142
A
n
94
143
A
n
95
144
A
n
96
145
A
n
97
146
A
n
98
147
A
n
99
148
A
ALA
149
n
100
ALA
149
A
VAL
150
n
101
VAL
150
A
ILE
151
n
102
ILE
151
A
GLU
152
n
103
GLU
152
A
SER
153
n
104
SER
153
A
MET
154
n
105
MET
154
A
ASN
155
n
106
ASN
155
A
LYS
156
n
107
LYS
156
A
GLU
157
n
108
GLU
157
A
LEU
158
n
109
LEU
158
A
LYS
159
n
110
LYS
159
A
LYS
160
n
111
LYS
160
A
ILE
161
n
112
ILE
161
A
ILE
162
n
113
ILE
162
A
GLY
163
n
114
GLY
163
A
GLN
164
n
115
GLN
164
A
VAL
165
n
116
VAL
165
A
ARG
166
n
117
ARG
166
A
ASP
167
n
118
ASP
167
A
GLN
168
n
119
GLN
168
A
ALA
169
n
120
ALA
169
A
GLU
170
n
121
GLU
170
A
HIS
171
n
122
HIS
171
A
LEU
172
n
123
LEU
172
A
LYS
173
n
124
LYS
173
A
THR
174
n
125
THR
174
A
ALA
175
n
126
ALA
175
A
VAL
176
n
127
VAL
176
A
GLN
177
n
128
GLN
177
A
MET
178
n
129
MET
178
A
ALA
179
n
130
ALA
179
A
VAL
180
n
131
VAL
180
A
PHE
181
n
132
PHE
181
A
ILE
182
n
133
ILE
182
A
HIS
183
n
134
HIS
183
A
ASN
184
n
135
ASN
184
A
LYS
185
n
136
LYS
185
A
LYS
186
n
137
LYS
186
A
ARG
187
n
138
ARG
187
A
LYS
188
n
139
LYS
188
A
GLY
189
n
140
GLY
189
A
n
141
190
A
n
142
191
A
n
143
192
A
GLY
193
n
144
GLY
193
A
TYR
194
n
145
TYR
194
A
SER
195
n
146
SER
195
A
ALA
196
n
147
ALA
196
A
GLY
197
n
148
GLY
197
A
GLU
198
n
149
GLU
198
A
ARG
199
n
150
ARG
199
A
ILE
200
n
151
ILE
200
A
VAL
201
n
152
VAL
201
A
ASP
202
n
153
ASP
202
A
ILE
203
n
154
ILE
203
A
ILE
204
n
155
ILE
204
A
ALA
205
n
156
ALA
205
A
THR
206
n
157
THR
206
A
ASP
207
n
158
ASP
207
A
ILE
208
n
159
ILE
208
A
GLN
209
n
160
GLN
209
A
THR
210
n
161
THR
210
A
n
162
211
A
n
163
212
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA,PQS
2
dimeric
4480
-34
12940
A
CYS
65
A
SG
CYS
16
1_555
A
CAC
300
B
AS
CAC
1_555
A
CAC
300
B
O1
CAC
1_555
117.0
A
CYS
65
A
SG
CYS
16
1_555
A
CAC
300
B
AS
CAC
1_555
A
CAC
300
B
C1
CAC
1_555
107.9
A
CAC
300
B
O1
CAC
1_555
A
CAC
300
B
AS
CAC
1_555
A
CAC
300
B
C1
CAC
1_555
120.9
A
CYS
65
A
SG
CYS
16
1_555
A
CAC
300
B
AS
CAC
1_555
A
CAC
300
B
C2
CAC
1_555
105.3
A
CAC
300
B
O1
CAC
1_555
A
CAC
300
B
AS
CAC
1_555
A
CAC
300
B
C2
CAC
1_555
112.8
A
CAC
300
B
C1
CAC
1_555
A
CAC
300
B
AS
CAC
1_555
A
CAC
300
B
C2
CAC
1_555
88.6
A
CYS
130
A
SG
CYS
81
1_555
A
CAC
400
C
AS
CAC
1_555
A
CAC
400
C
O1
CAC
1_555
102.1
A
CYS
130
A
SG
CYS
81
1_555
A
CAC
400
C
AS
CAC
1_555
A
CAC
400
C
C1
CAC
1_555
105.4
A
CAC
400
C
O1
CAC
1_555
A
CAC
400
C
AS
CAC
1_555
A
CAC
400
C
C1
CAC
1_555
118.5
A
CYS
130
A
SG
CYS
81
1_555
A
CAC
400
C
AS
CAC
1_555
A
CAC
400
C
C2
CAC
1_555
110.7
A
CAC
400
C
O1
CAC
1_555
A
CAC
400
C
AS
CAC
1_555
A
CAC
400
C
C2
CAC
1_555
126.3
A
CAC
400
C
C1
CAC
1_555
A
CAC
400
C
AS
CAC
1_555
A
CAC
400
C
C2
CAC
1_555
92.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
112
A
O
THR
63
A
N
TRP
61
A
N
TRP
12
A
O
GLN
62
A
O
GLN
13
A
N
VAL
77
A
N
VAL
28
A
O
VAL
72
A
O
VAL
23
A
N
ILE
89
A
N
ILE
40
1
A
SG
CYS
56
A
SG
CYS
7
1
Y
1
A
CG
LYS
111
A
CG
LYS
62
1
Y
1
A
CD
LYS
111
A
CD
LYS
62
1
Y
1
A
CE
LYS
111
A
CE
LYS
62
1
Y
1
A
NZ
LYS
111
A
NZ
LYS
62
1
Y
1
A
CG1
VAL
150
A
CG1
VAL
101
1
Y
1
A
CG2
VAL
150
A
CG2
VAL
101
1
Y
1
A
OG
SER
153
A
OG
SER
104
1
Y
1
A
CG
LYS
156
A
CG
LYS
107
1
Y
1
A
CD
LYS
156
A
CD
LYS
107
1
Y
1
A
CE
LYS
156
A
CE
LYS
107
1
Y
1
A
NZ
LYS
156
A
NZ
LYS
107
1
Y
1
A
CG
ASP
167
A
CG
ASP
118
1
Y
1
A
OD1
ASP
167
A
OD1
ASP
118
1
Y
1
A
OD2
ASP
167
A
OD2
ASP
118
1
Y
1
A
CG
GLU
170
A
CG
GLU
121
1
Y
1
A
CD
GLU
170
A
CD
GLU
121
1
Y
1
A
OE1
GLU
170
A
OE1
GLU
121
1
Y
1
A
OE2
GLU
170
A
OE2
GLU
121
1
Y
1
A
OG1
THR
210
A
OG1
THR
161
1
Y
1
A
CG2
THR
210
A
CG2
THR
161
1
Y
1
A
MET
50
A
MET
1
1
Y
1
A
HIS
51
A
HIS
2
1
Y
1
A
GLY
52
A
GLY
3
1
Y
1
A
GLN
53
A
GLN
4
1
Y
1
A
VAL
54
A
VAL
5
1
Y
1
A
ASP
55
A
ASP
6
1
Y
1
A
ILE
141
A
ILE
92
1
Y
1
A
PRO
142
A
PRO
93
1
Y
1
A
TYR
143
A
TYR
94
1
Y
1
A
ASN
144
A
ASN
95
1
Y
1
A
PRO
145
A
PRO
96
1
Y
1
A
GLN
146
A
GLN
97
1
Y
1
A
SER
147
A
SER
98
1
Y
1
A
GLN
148
A
GLN
99
1
Y
1
A
GLY
190
A
GLY
141
1
Y
1
A
ILE
191
A
ILE
142
1
Y
1
A
GLY
192
A
GLY
143
1
Y
1
A
LYS
211
A
LYS
162
1
Y
1
A
GLU
212
A
GLU
163
1
Y
1
A
GLU
138
-10.53
B
1
-3.10
0.50
120.30
117.20
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
107
107
107
N
1
13.90
2.20
113.40
127.30
A
A
A
CA
CB
CG
ASN
ASN
ASN
120
120
120
N
1
-11.24
1.80
114.00
102.76
A
A
A
CA
CB
SG
CYS
CYS
CYS
130
130
130
N
1
A
LYS
188
-117.15
75.91
39.2
0.2890000
0.2250000
2.02
20
654
12346
5
98.5
4.29
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
1B9D
2.02
20
100
1205
13
0
1092
.010
.020
.028
.040
0.030
.050
29.5
2.03
24
1B92
13085
0.0320000
1
11.9
4.6
98.5
model building
CCP4
refinement
REFMAC
data reduction
DENZO
data scaling
SCALEPACK
phasing
CCP4
MOBILITY OF AN HIV-1 INTEGRASE ACTIVE SITE LOOP IS CORRELATED WITH CATALYTIC ACTIVITY
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
GLY
94
A
GLY
45
HELX_P
A
ARG
107
A
ARG
58
1
1
14
A
GLY
118
A
GLY
69
HELX_P
A
PHE
121
A
PHE
72
5
2
4
A
THR
124
A
THR
75
HELX_P
A
ALA
133
A
ALA
84
1
3
10
A
VAL
150
A
VAL
101
HELX_P
A
GLN
168
A
GLN
119
1
4
19
A
LEU
172
A
LEU
123
HELX_P
A
LYS
185
A
LYS
136
1
5
14
A
ALA
196
A
ALA
147
HELX_P
A
ILE
208
A
ILE
159
1
6
13
metalc
2.284
A
CYS
65
A
SG
CYS
16
1_555
A
CAC
300
B
AS
CAC
1_555
metalc
2.304
A
CYS
130
A
SG
CYS
81
1_555
A
CAC
400
C
AS
CAC
1_555
TRANSFERASE
DNA INTEGRATION, TRANSFERASE
POL_HV1N5
UNP
1
P12497
765
927
1B92
50
212
P12497
A
1
1
163
1
GLY
engineered mutation
ALA
149
1B92
A
P12497
UNP
864
100
1
PHE
engineered mutation
LYS
185
1B92
A
P12497
UNP
900
136
4
parallel
anti-parallel
anti-parallel
A
THR
112
A
THR
63
A
HIS
114
A
HIS
65
A
ILE
60
A
ILE
11
A
LEU
68
A
LEU
19
A
LYS
71
A
LYS
22
A
HIS
78
A
HIS
29
A
TYR
83
A
TYR
34
A
ILE
89
A
ILE
40
BINDING SITE FOR RESIDUE CAC A 300
A
CAC
300
Software
6
BINDING SITE FOR RESIDUE CAC A 400
A
CAC
400
Software
6
BINDING SITE FOR RESIDUE SO4 A 1
A
SO4
1
Software
6
A
CYS
65
A
CYS
16
6
1_555
A
THR
97
A
THR
48
6
1_555
A
ASN
120
A
ASN
71
6
1_555
A
HOH
406
E
HOH
6
1_555
A
HOH
407
E
HOH
6
1_555
A
HOH
439
E
HOH
6
1_555
A
PHE
121
A
PHE
72
6
1_555
A
VAL
126
A
VAL
77
6
1_555
A
CYS
130
A
CYS
81
6
1_555
A
ILE
135
A
ILE
86
6
1_555
A
LYS
136
A
LYS
87
6
1_555
A
GLN
137
A
GLN
88
6
1_555
A
LYS
71
A
LYS
22
6
1_555
A
ARG
166
A
ARG
117
6
1_555
A
HIS
171
A
HIS
122
6
1_555
A
LEU
172
A
LEU
123
6
1_555
A
HOH
452
E
HOH
6
1_555
A
HOH
474
E
HOH
6
1_555
152
trigonal
P 31 2 1