1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Nishikawa, T. Nagadoi, A. Yoshimura, S. Aimoto, S. Nishimura, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 6 1057 1065 10.1016/S0969-2126(98)00106-3 9739097 Solution structure of the DNA-binding domain of human telomeric protein, hTRF1. 1998 10.2210/pdb1ba5/pdb pdb_00001ba5 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 6668.805 HTRF1 DNA-BINDING DOMAIN 1 man polymer TELOMERIC REPEAT BINDING FACTOR 1 no no RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample NUCLEUS 9606 Homo sapiens database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1999-04-27 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site Y BNL 1998-04-22 REL REL THE STRUCTURES OF HTRF1 DNA-BINDING DOMAIN WERE DETERMINED BY 2D PROTON NMR SPECTROSCOPY. LEAST RESTRAINT VIOLATION 60 18 COSY TOCSY NOESY 100 mM PHOSPHATE POTASSIU 6.8 1 ATMOSPHERE 300 K DETAILS OF THE STRUCTURE CALCULATION AND ALL STRUCTURAL STATISTICS WILL BE GIVEN IN THE REFERENCES CITED ABOVE. THE STRUCTURES WERE CONSTRUCTED ON THE BASIS OF 546 INTERPROTON DISTANCE RESTRAINTS DERIVED FROM NOES AND 27 DIHEDRAL ANGLE RESTRAINTS. THE METHOD USED TO DETERMINE THE STRUCTURES IS THE SIMULATED-ANNEALING PROTOCOL IN FOUR-DIMENSIONAL SPACE IMPLEMENTED IN THE EMBOSS PROGRAM [T.NAKAI, A.KIDERA AND H.NAKAMURA, J.BIOMOL.NMR,3,19-40(1993)]. THE STRUCTURES WERE REFINED BY THE RESTRAINED ENERGY MINIMIZATION USING AMBER ALL-ATOM FORCE FIELD. DISTANCE GEOMETRY/ SIMULATED ANNEALING H2O NAKAI,KIDERA,NAKAMURA refinement EMBOSS structure solution EMBOSS 500 Bruker AMX2-500 600 Bruker DMX600 ARG 1 n 1 ARG 1 A LYS 2 n 2 LYS 2 A ARG 3 n 3 ARG 3 A GLN 4 n 4 GLN 4 A ALA 5 n 5 ALA 5 A TRP 6 n 6 TRP 6 A LEU 7 n 7 LEU 7 A TRP 8 n 8 TRP 8 A GLU 9 n 9 GLU 9 A GLU 10 n 10 GLU 10 A ASP 11 n 11 ASP 11 A LYS 12 n 12 LYS 12 A ASN 13 n 13 ASN 13 A LEU 14 n 14 LEU 14 A ARG 15 n 15 ARG 15 A SER 16 n 16 SER 16 A GLY 17 n 17 GLY 17 A VAL 18 n 18 VAL 18 A ARG 19 n 19 ARG 19 A LYS 20 n 20 LYS 20 A TYR 21 n 21 TYR 21 A GLY 22 n 22 GLY 22 A GLU 23 n 23 GLU 23 A GLY 24 n 24 GLY 24 A ASN 25 n 25 ASN 25 A TRP 26 n 26 TRP 26 A SER 27 n 27 SER 27 A LYS 28 n 28 LYS 28 A ILE 29 n 29 ILE 29 A LEU 30 n 30 LEU 30 A LEU 31 n 31 LEU 31 A HIS 32 n 32 HIS 32 A TYR 33 n 33 TYR 33 A LYS 34 n 34 LYS 34 A PHE 35 n 35 PHE 35 A ASN 36 n 36 ASN 36 A ASN 37 n 37 ASN 37 A ARG 38 n 38 ARG 38 A THR 39 n 39 THR 39 A SER 40 n 40 SER 40 A VAL 41 n 41 VAL 41 A MET 42 n 42 MET 42 A LEU 43 n 43 LEU 43 A LYS 44 n 44 LYS 44 A ASP 45 n 45 ASP 45 A ARG 46 n 46 ARG 46 A TRP 47 n 47 TRP 47 A ARG 48 n 48 ARG 48 A THR 49 n 49 THR 49 A MET 50 n 50 MET 50 A LYS 51 n 51 LYS 51 A LYS 52 n 52 LYS 52 A LEU 53 n 53 LEU 53 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 16 A ARG 38 0.085 SIDE CHAIN 1 A LYS 2 62.22 -81.30 1 A ASN 25 -151.48 50.97 1 A ASN 37 -152.89 57.62 1 A THR 39 -142.73 -65.34 1 A SER 40 -163.39 -54.94 2 A LYS 2 174.75 153.08 2 A ARG 3 -159.91 64.67 2 A ALA 5 -153.44 -49.57 2 A TRP 26 -135.06 -60.99 2 A HIS 32 -121.48 -56.55 2 A ASN 36 -91.54 -122.31 2 A ASN 37 -90.79 45.82 3 A LYS 2 -162.62 48.05 3 A TYR 33 -161.04 55.09 3 A LYS 34 49.47 93.22 3 A ASN 36 -99.62 -134.99 3 A LYS 52 -146.67 18.21 4 A ASN 36 -68.60 -73.50 4 A ASN 37 -151.97 55.20 4 A SER 40 57.73 -71.55 5 A ALA 5 -75.31 -111.11 5 A ASN 37 -154.66 51.45 6 A ARG 3 46.90 -105.99 6 A GLN 4 -156.16 32.68 6 A ALA 5 -75.39 -81.60 6 A ASN 25 -80.88 47.98 6 A ASN 36 -105.43 -149.05 7 A ARG 3 53.20 79.95 7 A TRP 6 62.59 -179.83 7 A TYR 21 -73.55 -72.31 7 A LEU 31 -78.35 22.04 7 A HIS 32 -146.25 -64.20 7 A LYS 34 58.94 -128.38 7 A PHE 35 69.14 158.77 7 A ASN 36 -93.66 -156.92 7 A THR 39 -147.24 -87.70 7 A SER 40 -145.38 -56.55 7 A LYS 52 -159.39 44.55 8 A ARG 3 67.59 -76.74 8 A TYR 21 -148.19 -38.01 8 A TRP 26 -125.36 -53.52 8 A HIS 32 -78.24 -71.39 8 A ASN 37 -153.10 58.51 8 A THR 39 -149.53 -69.75 8 A SER 40 -158.26 -59.55 8 A LYS 52 -167.38 -50.90 9 A GLN 4 -163.15 -66.43 9 A TRP 6 55.29 78.79 9 A TYR 21 -113.38 -82.14 9 A ASN 36 -86.58 -123.45 9 A THR 39 -151.61 -75.15 9 A SER 40 -155.41 -57.43 9 A LYS 51 -79.14 28.42 10 A LYS 2 -141.42 -69.97 10 A GLN 4 -96.29 -81.14 10 A ALA 5 -86.90 48.68 10 A TRP 6 57.26 -164.58 10 A TRP 26 -126.90 -60.77 10 A ASN 36 -88.32 -133.86 10 A THR 39 -123.37 -94.26 10 A SER 40 -155.76 -54.32 10 A MET 50 -83.69 39.73 10 A LYS 52 -172.22 -35.75 11 A GLN 4 -56.04 -70.97 11 A LYS 20 -93.85 -61.69 11 A ASN 36 -98.47 -144.87 12 A ARG 3 -114.86 -140.99 12 A TRP 6 60.26 98.81 12 A TYR 21 -97.10 -79.59 12 A TYR 33 -77.11 -166.76 12 A LYS 34 -76.09 -132.80 12 A PHE 35 72.74 90.44 12 A ASN 36 -99.52 -61.47 12 A ASN 37 -91.59 36.72 12 A SER 40 32.79 -93.21 13 A LYS 2 52.45 -105.67 13 A ARG 3 74.02 -41.01 13 A TRP 6 58.22 -172.82 13 A TYR 21 -77.18 -72.52 13 A ASN 25 -79.79 43.94 13 A LYS 34 -76.41 -123.47 13 A PHE 35 73.72 -177.46 13 A ASN 36 -160.50 -96.34 14 A ARG 3 -158.40 61.11 14 A ALA 5 -68.86 -178.11 14 A TYR 21 -96.74 -86.26 14 A ASN 36 -62.98 -80.32 14 A ASN 37 -146.08 52.06 14 A LYS 52 -136.61 -44.88 15 A GLN 4 -69.02 94.94 15 A TYR 21 -69.42 -71.76 15 A TYR 33 -150.92 25.83 15 A LYS 34 53.05 101.37 15 A ASN 36 -100.63 -139.98 16 A LYS 2 43.71 -106.45 16 A SER 40 44.99 -103.78 17 A LYS 2 -165.71 -36.56 17 A ALA 5 -84.76 -88.99 17 A TRP 26 -143.35 -59.82 17 A THR 39 -139.94 -86.83 17 A SER 40 -150.41 -63.83 18 A LYS 2 57.53 92.27 18 A ALA 5 -172.06 -128.10 18 A TRP 6 61.79 178.47 18 A SER 40 56.43 -74.07 18 A LYS 51 -78.19 20.49 refinement AMBER DNA-BINDING DOMAIN OF HUMAN TELOMERIC PROTEIN, HTRF1, NMR, 18 STRUCTURES 1 Y N A TRP 8 A TRP 8 HELX_P A TYR 21 A TYR 21 1 1 14 A TRP 26 A TRP 26 HELX_P A HIS 32 A HIS 32 1 2 7 A VAL 41 A VAL 41 HELX_P A LYS 51 A LYS 51 1 3 11 DNA-BINDING DOMAIN DNA-BINDING DOMAIN, MYB REPEATS, TELOMERES, TRF TERF1_HUMAN UNP 1 1 P54274 MAEDVSSAAPSPRRCADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEEEEDAGLVAEAEAVAAGWMLD FLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGS IEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKI KSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRKSVSDKQSAVTESSEGTVSLLRSHKN LFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATESRIPVSKSQPVTPEKHRARKRQAWLWEEDKNLRSGVRKYGE GNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSED 378 430 1BA5 1 53 P54274 A 1 1 53 1 P 1