1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Nishikawa, T.
Nagadoi, A.
Yoshimura, S.
Aimoto, S.
Nishimura, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
6
1057
1065
10.1016/S0969-2126(98)00106-3
9739097
Solution structure of the DNA-binding domain of human telomeric protein, hTRF1.
1998
10.2210/pdb1ba5/pdb
pdb_00001ba5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
6668.805
HTRF1
DNA-BINDING DOMAIN
1
man
polymer
TELOMERIC REPEAT BINDING FACTOR 1
no
no
RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL
RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
NUCLEUS
9606
Homo sapiens
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1999-04-27
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1998-04-22
REL
REL
THE STRUCTURES OF HTRF1 DNA-BINDING DOMAIN WERE DETERMINED BY 2D PROTON NMR SPECTROSCOPY.
LEAST RESTRAINT VIOLATION
60
18
COSY
TOCSY
NOESY
100 mM PHOSPHATE POTASSIU
6.8
1
ATMOSPHERE
300
K
DETAILS OF THE STRUCTURE CALCULATION AND ALL STRUCTURAL STATISTICS WILL BE GIVEN IN THE REFERENCES CITED ABOVE. THE STRUCTURES WERE CONSTRUCTED ON THE BASIS OF 546 INTERPROTON DISTANCE RESTRAINTS DERIVED FROM NOES AND 27 DIHEDRAL ANGLE RESTRAINTS. THE METHOD USED TO DETERMINE THE STRUCTURES IS THE SIMULATED-ANNEALING PROTOCOL IN FOUR-DIMENSIONAL SPACE IMPLEMENTED IN THE EMBOSS PROGRAM [T.NAKAI, A.KIDERA AND H.NAKAMURA, J.BIOMOL.NMR,3,19-40(1993)]. THE STRUCTURES WERE REFINED BY THE RESTRAINED ENERGY MINIMIZATION USING AMBER ALL-ATOM FORCE FIELD.
DISTANCE GEOMETRY/ SIMULATED ANNEALING
H2O
NAKAI,KIDERA,NAKAMURA
refinement
EMBOSS
structure solution
EMBOSS
500
Bruker
AMX2-500
600
Bruker
DMX600
ARG
1
n
1
ARG
1
A
LYS
2
n
2
LYS
2
A
ARG
3
n
3
ARG
3
A
GLN
4
n
4
GLN
4
A
ALA
5
n
5
ALA
5
A
TRP
6
n
6
TRP
6
A
LEU
7
n
7
LEU
7
A
TRP
8
n
8
TRP
8
A
GLU
9
n
9
GLU
9
A
GLU
10
n
10
GLU
10
A
ASP
11
n
11
ASP
11
A
LYS
12
n
12
LYS
12
A
ASN
13
n
13
ASN
13
A
LEU
14
n
14
LEU
14
A
ARG
15
n
15
ARG
15
A
SER
16
n
16
SER
16
A
GLY
17
n
17
GLY
17
A
VAL
18
n
18
VAL
18
A
ARG
19
n
19
ARG
19
A
LYS
20
n
20
LYS
20
A
TYR
21
n
21
TYR
21
A
GLY
22
n
22
GLY
22
A
GLU
23
n
23
GLU
23
A
GLY
24
n
24
GLY
24
A
ASN
25
n
25
ASN
25
A
TRP
26
n
26
TRP
26
A
SER
27
n
27
SER
27
A
LYS
28
n
28
LYS
28
A
ILE
29
n
29
ILE
29
A
LEU
30
n
30
LEU
30
A
LEU
31
n
31
LEU
31
A
HIS
32
n
32
HIS
32
A
TYR
33
n
33
TYR
33
A
LYS
34
n
34
LYS
34
A
PHE
35
n
35
PHE
35
A
ASN
36
n
36
ASN
36
A
ASN
37
n
37
ASN
37
A
ARG
38
n
38
ARG
38
A
THR
39
n
39
THR
39
A
SER
40
n
40
SER
40
A
VAL
41
n
41
VAL
41
A
MET
42
n
42
MET
42
A
LEU
43
n
43
LEU
43
A
LYS
44
n
44
LYS
44
A
ASP
45
n
45
ASP
45
A
ARG
46
n
46
ARG
46
A
TRP
47
n
47
TRP
47
A
ARG
48
n
48
ARG
48
A
THR
49
n
49
THR
49
A
MET
50
n
50
MET
50
A
LYS
51
n
51
LYS
51
A
LYS
52
n
52
LYS
52
A
LEU
53
n
53
LEU
53
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
16
A
ARG
38
0.085
SIDE CHAIN
1
A
LYS
2
62.22
-81.30
1
A
ASN
25
-151.48
50.97
1
A
ASN
37
-152.89
57.62
1
A
THR
39
-142.73
-65.34
1
A
SER
40
-163.39
-54.94
2
A
LYS
2
174.75
153.08
2
A
ARG
3
-159.91
64.67
2
A
ALA
5
-153.44
-49.57
2
A
TRP
26
-135.06
-60.99
2
A
HIS
32
-121.48
-56.55
2
A
ASN
36
-91.54
-122.31
2
A
ASN
37
-90.79
45.82
3
A
LYS
2
-162.62
48.05
3
A
TYR
33
-161.04
55.09
3
A
LYS
34
49.47
93.22
3
A
ASN
36
-99.62
-134.99
3
A
LYS
52
-146.67
18.21
4
A
ASN
36
-68.60
-73.50
4
A
ASN
37
-151.97
55.20
4
A
SER
40
57.73
-71.55
5
A
ALA
5
-75.31
-111.11
5
A
ASN
37
-154.66
51.45
6
A
ARG
3
46.90
-105.99
6
A
GLN
4
-156.16
32.68
6
A
ALA
5
-75.39
-81.60
6
A
ASN
25
-80.88
47.98
6
A
ASN
36
-105.43
-149.05
7
A
ARG
3
53.20
79.95
7
A
TRP
6
62.59
-179.83
7
A
TYR
21
-73.55
-72.31
7
A
LEU
31
-78.35
22.04
7
A
HIS
32
-146.25
-64.20
7
A
LYS
34
58.94
-128.38
7
A
PHE
35
69.14
158.77
7
A
ASN
36
-93.66
-156.92
7
A
THR
39
-147.24
-87.70
7
A
SER
40
-145.38
-56.55
7
A
LYS
52
-159.39
44.55
8
A
ARG
3
67.59
-76.74
8
A
TYR
21
-148.19
-38.01
8
A
TRP
26
-125.36
-53.52
8
A
HIS
32
-78.24
-71.39
8
A
ASN
37
-153.10
58.51
8
A
THR
39
-149.53
-69.75
8
A
SER
40
-158.26
-59.55
8
A
LYS
52
-167.38
-50.90
9
A
GLN
4
-163.15
-66.43
9
A
TRP
6
55.29
78.79
9
A
TYR
21
-113.38
-82.14
9
A
ASN
36
-86.58
-123.45
9
A
THR
39
-151.61
-75.15
9
A
SER
40
-155.41
-57.43
9
A
LYS
51
-79.14
28.42
10
A
LYS
2
-141.42
-69.97
10
A
GLN
4
-96.29
-81.14
10
A
ALA
5
-86.90
48.68
10
A
TRP
6
57.26
-164.58
10
A
TRP
26
-126.90
-60.77
10
A
ASN
36
-88.32
-133.86
10
A
THR
39
-123.37
-94.26
10
A
SER
40
-155.76
-54.32
10
A
MET
50
-83.69
39.73
10
A
LYS
52
-172.22
-35.75
11
A
GLN
4
-56.04
-70.97
11
A
LYS
20
-93.85
-61.69
11
A
ASN
36
-98.47
-144.87
12
A
ARG
3
-114.86
-140.99
12
A
TRP
6
60.26
98.81
12
A
TYR
21
-97.10
-79.59
12
A
TYR
33
-77.11
-166.76
12
A
LYS
34
-76.09
-132.80
12
A
PHE
35
72.74
90.44
12
A
ASN
36
-99.52
-61.47
12
A
ASN
37
-91.59
36.72
12
A
SER
40
32.79
-93.21
13
A
LYS
2
52.45
-105.67
13
A
ARG
3
74.02
-41.01
13
A
TRP
6
58.22
-172.82
13
A
TYR
21
-77.18
-72.52
13
A
ASN
25
-79.79
43.94
13
A
LYS
34
-76.41
-123.47
13
A
PHE
35
73.72
-177.46
13
A
ASN
36
-160.50
-96.34
14
A
ARG
3
-158.40
61.11
14
A
ALA
5
-68.86
-178.11
14
A
TYR
21
-96.74
-86.26
14
A
ASN
36
-62.98
-80.32
14
A
ASN
37
-146.08
52.06
14
A
LYS
52
-136.61
-44.88
15
A
GLN
4
-69.02
94.94
15
A
TYR
21
-69.42
-71.76
15
A
TYR
33
-150.92
25.83
15
A
LYS
34
53.05
101.37
15
A
ASN
36
-100.63
-139.98
16
A
LYS
2
43.71
-106.45
16
A
SER
40
44.99
-103.78
17
A
LYS
2
-165.71
-36.56
17
A
ALA
5
-84.76
-88.99
17
A
TRP
26
-143.35
-59.82
17
A
THR
39
-139.94
-86.83
17
A
SER
40
-150.41
-63.83
18
A
LYS
2
57.53
92.27
18
A
ALA
5
-172.06
-128.10
18
A
TRP
6
61.79
178.47
18
A
SER
40
56.43
-74.07
18
A
LYS
51
-78.19
20.49
refinement
AMBER
DNA-BINDING DOMAIN OF HUMAN TELOMERIC PROTEIN, HTRF1, NMR, 18 STRUCTURES
1
Y
N
A
TRP
8
A
TRP
8
HELX_P
A
TYR
21
A
TYR
21
1
1
14
A
TRP
26
A
TRP
26
HELX_P
A
HIS
32
A
HIS
32
1
2
7
A
VAL
41
A
VAL
41
HELX_P
A
LYS
51
A
LYS
51
1
3
11
DNA-BINDING DOMAIN
DNA-BINDING DOMAIN, MYB REPEATS, TELOMERES, TRF
TERF1_HUMAN
UNP
1
1
P54274
MAEDVSSAAPSPRRCADGRDADPTEEQMAETERNDEEQFECQELLECQVQVGAPEEEEEEEEDAGLVAEAEAVAAGWMLD
FLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGS
IEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKI
KSYVNYVLSEKSSTFLMKAAAKVVESKRTRTITSQDKPSGNDVEMETEANLDTRKSVSDKQSAVTESSEGTVSLLRSHKN
LFLSKLQHGTQQQDLNKKERRVGTPQSTKKKKESRRATESRIPVSKSQPVTPEKHRARKRQAWLWEEDKNLRSGVRKYGE
GNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSED
378
430
1BA5
1
53
P54274
A
1
1
53
1
P 1