1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Mujeeb, A. Clever, J.L. Billeci, T.M. James, T.L. Parslow, T.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking US Nat.Struct.Biol. NSBIEW 2024 1072-8368 5 432 436 10.1038/nsb0698-432 9628479 Structure of the dimer initiation complex of HIV-1 genomic RNA. 1998 10.2210/pdb1bau/pdb pdb_00001bau 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 ENGINEERED SEQUENCE IN THE LOWER STEM REGION 7417.488 SL1 RNA DIMER HIV-1 PACKAGING SIGNAL, RESIDUE 248-270 2 syn polymer no no GGCAAUGAAGCGCGCACGUUGCC GGCAAUGAAGCGCGCACGUUGCC A,B polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n -15.175 1 19 A 1 A 23 0.761 A_G1:C23_A 1 -17.580 -0.330 -0.191 -0.182 -30.216 1 19 A 2 A 22 -3.038 A_G2:C22_A 2 -13.579 -0.118 -0.363 -0.038 -6.698 1 19 A 3 A 21 0.632 A_C3:G21_A 3 4.404 0.636 0.204 -0.240 -2.835 1 20 A 4 A 20 -6.203 A_A4:U20_A 4 -12.053 0.053 -0.427 -0.059 25.270 1 20 A 5 A 19 -4.092 A_A5:U19_A 5 -6.241 0.021 0.389 0.061 37.852 28 A 6 A 18 -5.908 A_U6:G18_A 6 -24.801 2.254 -0.694 -0.450 50.336 5 A 7 A 17 20.777 A_G7:C17_A 7 -5.592 3.543 -1.557 -1.605 -43.605 B 9 A 16 88.914 B_A9:A16_A 8 46.952 -5.587 -0.911 1.053 6.539 1 19 B 10 A 15 1.828 B_G10:C15_A 9 2.046 -1.209 0.946 -0.394 16.381 1 B 11 A 14 -9.791 B_C11:G14_A 10 -8.893 -1.067 -0.293 -0.723 4.461 B 12 A 13 11.309 B_G12:C13_A 11 0.153 0.617 0.695 -0.990 -2.309 1 22 B 13 A 12 11.538 B_C13:G12_A 12 -0.220 -0.008 0.714 -1.151 -6.685 1 19 B 15 A 10 3.417 B_C15:G10_A 13 0.532 0.997 1.296 -0.917 42.733 B 16 A 9 89.808 B_A16:A9_A 14 45.056 5.113 -0.559 0.672 -50.345 5 B 17 B 7 20.761 B_C17:G7_B 15 -5.584 -3.543 -1.557 -1.605 -37.862 28 B 18 B 6 -5.923 B_G18:U6_B 16 -24.810 -2.253 -0.694 -0.450 -25.279 1 20 B 19 B 5 -4.087 B_U19:A5_B 17 -6.219 -0.021 0.389 0.061 2.804 1 20 B 20 B 4 -6.205 B_U20:A4_B 18 -12.016 -0.053 -0.427 -0.059 6.685 1 19 B 21 B 3 0.630 B_G21:C3_B 19 4.392 -0.636 0.203 -0.240 30.230 1 19 B 22 B 2 -3.049 B_C22:G2_B 20 -13.570 0.118 -0.365 -0.038 15.165 1 19 B 23 B 1 0.755 B_C23:G1_B 21 -17.574 0.330 -0.191 -0.182 3.089 32.381 A A 1 2 17.035 A A 23 22 3.608 9.367 -0.541 -1.210 AA_G1G2:C22C23_AA 1 1.596 -2.903 30.991 -3.901 1.264 2.839 33.242 A A 2 3 2.092 A A 22 21 2.978 1.193 0.690 -0.646 AA_G2C3:G21C22_AA 2 -4.435 7.777 32.932 -1.307 -1.868 2.126 32.053 A A 3 4 37.631 A A 21 20 3.658 19.381 -0.660 -1.248 AA_C3A4:U20G21_AA 3 2.779 -5.395 25.503 -5.721 1.692 2.833 26.171 A A 4 5 -5.443 A A 20 19 2.704 -2.381 -0.662 -1.332 AA_A4A5:U19U20_AA 4 -11.420 26.111 23.468 -2.365 -1.309 2.766 38.664 A A 5 6 7.457 A A 19 18 3.013 4.913 -0.644 -1.019 AA_A5U6:G18U19_AA 5 4.841 -7.349 38.067 -2.077 1.503 3.118 46.334 A A 6 7 -20.220 A A 18 17 3.140 -15.603 2.395 -1.249 AA_U6G7:C17G18_AA 6 -4.867 6.308 43.505 -0.275 -3.453 1.540 46.109 A B 7 9 34.277 A A 17 16 4.054 24.856 -0.035 -3.108 AB_G7A9:A16C17_AA 7 -16.813 23.185 35.420 -6.065 -1.374 0.956 54.617 B B 9 10 -24.297 A A 16 15 3.258 -20.393 -3.594 -1.630 BB_A9G10:C15A16_AA 8 32.359 -38.553 39.744 -0.832 5.416 1.609 26.217 B B 10 11 32.503 A A 15 14 3.055 13.964 -1.280 -1.554 BB_G10C11:G14C15_AA 9 3.065 -7.133 22.033 -6.362 3.465 2.402 58.522 B B 11 12 48.664 A A 14 13 3.892 42.909 1.144 -0.250 BB_C11G12:C13G14_AA 10 -7.810 8.857 40.018 -2.917 -1.655 1.467 21.661 B B 12 13 33.196 A A 13 12 3.281 11.810 0.000 -2.394 BB_G12C13:G12C13_AA 11 -0.008 0.024 18.190 -10.079 -0.004 4.021 83.330 B B 13 15 41.631 A A 12 10 5.841 52.330 1.094 -1.653 BB_C13C15:G10G12_AA 12 8.588 -6.832 66.797 -3.488 -0.455 0.960 54.717 B B 15 16 -24.071 A A 10 9 3.280 -20.237 3.583 -1.619 BB_C15A16:A9G10_AA 13 -32.560 38.730 39.802 -0.822 -5.410 1.556 45.629 B B 16 17 33.168 A B 9 7 4.147 23.934 -0.307 -3.191 BB_A16C17:G7A9_BA 14 16.152 -22.384 35.716 -6.198 1.802 3.118 46.335 B B 17 18 -20.218 B B 7 6 3.139 -15.601 -2.396 -1.249 BB_C17G18:U6G7_BB 15 4.868 -6.308 43.507 -0.276 3.454 2.766 38.667 B B 18 19 7.465 B B 6 5 3.013 4.918 0.644 -1.019 BB_G18U19:A5U6_BB 16 -4.849 7.360 38.068 -2.077 -1.504 2.833 26.163 B B 19 20 -5.447 B B 5 4 2.704 -2.382 0.661 -1.332 BB_U19U20:A4A5_BB 17 11.416 -26.108 23.461 -2.365 1.312 2.127 32.053 B B 20 21 37.619 B B 4 3 3.657 19.376 0.660 -1.248 BB_U20G21:C3A4_BB 18 -2.775 5.388 25.507 -5.720 -1.691 2.838 33.244 B B 21 22 2.076 B B 3 2 2.977 1.184 -0.690 -0.645 BB_G21C22:G2C3_BB 19 4.444 -7.791 32.933 -1.304 1.869 3.088 32.382 B B 22 23 17.053 B B 2 1 3.608 9.377 0.541 -1.211 BB_C22C23:G1G2_BB 20 -1.605 2.919 30.989 -3.903 -1.267 database_2 pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other 1 0 1999-04-27 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_nmr_software.name Y BNL 1998-04-18 REL REL RNA SYNTHESIZED USING T7 RNA TRANSCRIPTION sample INTERPROTON-DISTANCE INFORMATION (IN THE FORM OF NOE CROSS-PEAKS) WAS COLLECTED FROM 2D NOE EXPERIMENTS IN D2O AS WELL AS IN 90% H2O FOR NON-EXCHANGEABLE AND EXCHANGEABLE PROTONS, RESPECTIVELY. 2D NOE EXPERIMENTS WERE CARRIED OUT AT 50, 80, 200 AND 400 M SEC MIXING TIMES. COUPLING CONSTANTS AND SUGAR CONFORMATIONS WERE DEDUCED FROM DQF-COSY EXPERIMENTS. LOWEST NMR CONSTRAINT VIOLATIONS AND LOWEST AMBER ENERGY. 34 1 2D NOE IN D2O 2D NOE IN WATER DQF-COSY 100 mM NACL 6.4 298 K RANDOMLY GENERATED STRUCTURES WERE FOLDED IN DYANA USING NMR DRIVEN STRUCTURAL RESTRAINTS. 34 STRUCTURES SHOWING LOWEST TARGET FUNCTION VALUES AND NO CONSISTENT VIOLATIONS OF NMR RESTRAINTS WERE INDIVIDUALLY SUBJECTED TO RESTRAINED ENERGY MINIMIZATION IN AMBER 4.1. FOR DETAILS OF REFINEMENT PROTOCOL, PLEASE REFER TO THE REFERENCE ABOVE. D2O AND H2O GUNTERT,WUTHRICH refinement DYANA 1.4 structure solution DYANA structure solution Amber 4.1 600 Varian UNITYPLUS G 1 n 1 G 1 A G 2 n 2 G 2 A C 3 n 3 C 3 A A 4 n 4 A 4 A A 5 n 5 A 5 A U 6 n 6 U 6 A G 7 n 7 G 7 A A 8 n 8 A 8 A A 9 n 9 A 9 A G 10 n 10 G 10 A C 11 n 11 C 11 A G 12 n 12 G 12 A C 13 n 13 C 13 A G 14 n 14 G 14 A C 15 n 15 C 15 A A 16 n 16 A 16 A C 17 n 17 C 17 A G 18 n 18 G 18 A U 19 n 19 U 19 A U 20 n 20 U 20 A G 21 n 21 G 21 A C 22 n 22 C 22 A C 23 n 23 C 23 A G 1 n 1 G 1 B G 2 n 2 G 2 B C 3 n 3 C 3 B A 4 n 4 A 4 B A 5 n 5 A 5 B U 6 n 6 U 6 B G 7 n 7 G 7 B A 8 n 8 A 8 B A 9 n 9 A 9 B G 10 n 10 G 10 B C 11 n 11 C 11 B G 12 n 12 G 12 B C 13 n 13 C 13 B G 14 n 14 G 14 B C 15 n 15 C 15 B A 16 n 16 A 16 B C 17 n 17 C 17 B G 18 n 18 G 18 B U 19 n 19 U 19 B U 20 n 20 U 20 B G 21 n 21 G 21 B C 22 n 22 C 22 B C 23 n 23 C 23 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A B H21 O2 G C 12 13 0.32 1 A B O2 H21 C G 13 12 0.74 1 A B H1 N3 G C 12 13 0.80 1 A B C2 H21 C G 13 12 1.08 1 A B O6 H41 G C 12 13 1.13 1 A B N3 H1 C G 13 12 1.14 1 A B N3 H1 C G 11 14 1.19 1 A B O2 H21 C G 11 14 1.23 1 A B C4 H1 C G 11 14 1.26 1 A B H1 H41 G C 14 11 1.27 1 A B N2 O2 G C 12 13 1.27 1 A B H41 C6 C G 11 14 1.30 1 A B C2 H21 C G 11 14 1.31 1 A B H41 O6 C G 13 12 1.33 1 A B H21 C2 G C 12 13 1.34 1 A B N3 H21 C G 11 14 1.38 1 A B N4 H1 C G 11 14 1.39 1 A B O6 H41 G C 14 11 1.40 1 A B H41 N1 C G 11 14 1.41 1 A B H41 O6 C G 11 14 1.44 1 A B O2 N2 C G 13 12 1.47 1 A B H1 N3 G C 14 11 1.50 1 A B H21 O2 G C 10 15 1.54 1 A B C5 H61 C A 17 9 1.58 1 A B OP1 OP1 A A 9 9 1.78 1 A B N1 N3 G C 12 13 1.78 1 A B C5 N6 C A 17 9 1.86 1 A B N4 O6 C G 11 14 1.89 1 A B N3 N1 C G 11 14 1.91 1 A B N6 C5 A C 9 17 1.92 1 A B N3 N1 C G 13 12 1.97 1 A B N4 N1 C G 11 14 1.99 1 A B O2 N2 C G 11 14 2.00 1 A B C6 N6 C A 17 9 2.02 1 A B N3 N2 C G 11 14 2.02 1 A B C2 N2 C G 13 12 2.10 1 A B O6 N4 G C 14 11 2.12 1 A B O6 N4 G C 12 13 2.15 1 A B N4 C6 C G 11 14 2.18 1 A A 4 0.069 SIDE CHAIN 1 A U 6 0.074 SIDE CHAIN 1 A G 7 0.145 SIDE CHAIN 1 A A 8 0.091 SIDE CHAIN 1 A A 9 0.135 SIDE CHAIN 1 A C 11 0.099 SIDE CHAIN 1 A G 12 0.087 SIDE CHAIN 1 A C 13 0.072 SIDE CHAIN 1 A G 14 0.086 SIDE CHAIN 1 A C 17 0.140 SIDE CHAIN 1 A G 18 0.087 SIDE CHAIN 1 A U 19 0.109 SIDE CHAIN 1 A U 20 0.112 SIDE CHAIN 1 A C 22 0.085 SIDE CHAIN 1 A C 23 0.090 SIDE CHAIN 1 B A 4 0.069 SIDE CHAIN 1 B U 6 0.075 SIDE CHAIN 1 B G 7 0.145 SIDE CHAIN 1 B A 8 0.091 SIDE CHAIN 1 B A 9 0.135 SIDE CHAIN 1 B C 11 0.099 SIDE CHAIN 1 B G 12 0.087 SIDE CHAIN 1 B C 13 0.072 SIDE CHAIN 1 B G 14 0.086 SIDE CHAIN 1 B C 17 0.140 SIDE CHAIN 1 B G 18 0.087 SIDE CHAIN 1 B U 19 0.109 SIDE CHAIN 1 B U 20 0.112 SIDE CHAIN 1 B C 22 0.085 SIDE CHAIN 1 B C 23 0.090 SIDE CHAIN 1 3.12 0.50 117.70 120.82 A A A C5 C6 N1 A A A 4 4 4 N 1 4.34 0.70 108.50 112.84 A A A O4' C1' N1 U U U 6 6 6 N 1 -2.91 0.40 106.40 103.49 A A A C8 N9 C4 G G G 7 7 7 N 1 -9.27 1.00 102.60 93.33 A A A C4' C3' C2' A A A 8 8 8 N 1 5.88 0.80 101.50 107.38 A A A C3' C2' C1' A A A 8 8 8 N 1 8.22 1.30 114.00 122.22 A A A N9 C1' C2' A A A 8 8 8 N 1 3.14 0.50 110.60 113.74 A A A C2 N3 C4 A A A 8 8 8 N 1 3.24 0.50 117.70 120.94 A A A C5 C6 N1 A A A 8 8 8 N 1 -6.81 0.60 118.60 111.79 A A A N1 C6 N6 A A A 8 8 8 N 1 7.36 0.90 109.80 117.16 A A A C5' C4' O4' A A A 9 9 9 N 1 -3.38 0.50 103.90 100.52 A A A C5 N7 C8 A A A 9 9 9 N 1 3.72 0.50 113.80 117.52 A A A N7 C8 N9 A A A 9 9 9 N 1 -2.75 0.40 105.80 103.05 A A A C8 N9 C4 A A A 9 9 9 N 1 -4.63 0.60 118.60 113.97 A A A N1 C6 N6 A A A 9 9 9 N 1 9.41 0.70 108.50 117.91 A A A O4' C1' N9 G G G 10 10 10 N 1 10.00 0.90 109.80 119.80 A A A C5' C4' O4' C C C 11 11 11 N 1 7.24 0.70 108.50 115.74 A A A O4' C1' N1 C C C 11 11 11 N 1 4.76 0.60 118.90 123.66 A A A N1 C2 O2 C C C 11 11 11 N 1 -5.20 0.70 121.90 116.70 A A A N3 C2 O2 C C C 11 11 11 N 1 9.11 0.90 109.80 118.91 A A A C5' C4' O4' C C C 13 13 13 N 1 6.77 0.70 108.50 115.27 A A A O4' C1' N1 C C C 13 13 13 N 1 -4.30 0.70 121.90 117.60 A A A N3 C2 O2 C C C 13 13 13 N 1 7.43 0.70 108.50 115.93 A A A O4' C1' N1 C C C 15 15 15 N 1 7.05 0.80 101.50 108.55 A A A C3' C2' C1' A A A 16 16 16 N 1 3.10 0.50 110.60 113.70 A A A C2 N3 C4 A A A 16 16 16 N 1 3.21 0.50 117.70 120.91 A A A C5 C6 N1 A A A 16 16 16 N 1 -3.36 0.50 103.90 100.54 A A A C5 N7 C8 A A A 16 16 16 N 1 6.16 0.50 113.80 119.96 A A A N7 C8 N9 A A A 16 16 16 N 1 -5.21 0.40 105.80 100.59 A A A C8 N9 C4 A A A 16 16 16 N 1 -4.29 0.60 118.60 114.31 A A A N1 C6 N6 A A A 16 16 16 N 1 -3.46 0.40 120.30 116.84 A A A C6 N1 C2 C C C 17 17 17 N 1 7.41 0.70 108.50 115.91 A A A O4' C1' N1 U U U 19 19 19 N 1 6.22 0.70 108.50 114.72 A A A O4' C1' N1 U U U 20 20 20 N 1 4.73 0.70 108.50 113.23 A A A O4' C1' N9 G G G 21 21 21 N 1 3.07 0.50 117.70 120.77 B B B C5 C6 N1 A A A 4 4 4 N 1 4.39 0.70 108.50 112.89 B B B O4' C1' N1 U U U 6 6 6 N 1 -2.86 0.40 106.40 103.54 B B B C8 N9 C4 G G G 7 7 7 N 1 -9.30 1.00 102.60 93.30 B B B C4' C3' C2' A A A 8 8 8 N 1 5.91 0.80 101.50 107.41 B B B C3' C2' C1' A A A 8 8 8 N 1 8.22 1.30 114.00 122.22 B B B N9 C1' C2' A A A 8 8 8 N 1 3.17 0.50 110.60 113.77 B B B C2 N3 C4 A A A 8 8 8 N 1 3.24 0.50 117.70 120.94 B B B C5 C6 N1 A A A 8 8 8 N 1 -6.82 0.60 118.60 111.78 B B B N1 C6 N6 A A A 8 8 8 N 1 7.35 0.90 109.80 117.15 B B B C5' C4' O4' A A A 9 9 9 N 1 -3.34 0.50 103.90 100.56 B B B C5 N7 C8 A A A 9 9 9 N 1 3.71 0.50 113.80 117.51 B B B N7 C8 N9 A A A 9 9 9 N 1 -2.78 0.40 105.80 103.02 B B B C8 N9 C4 A A A 9 9 9 N 1 -4.68 0.60 118.60 113.92 B B B N1 C6 N6 A A A 9 9 9 N 1 9.30 0.70 108.50 117.80 B B B O4' C1' N9 G G G 10 10 10 N 1 10.04 0.90 109.80 119.84 B B B C5' C4' O4' C C C 11 11 11 N 1 7.22 0.70 108.50 115.72 B B B O4' C1' N1 C C C 11 11 11 N 1 4.75 0.60 118.90 123.65 B B B N1 C2 O2 C C C 11 11 11 N 1 -5.25 0.70 121.90 116.65 B B B N3 C2 O2 C C C 11 11 11 N 1 9.18 0.90 109.80 118.98 B B B C5' C4' O4' C C C 13 13 13 N 1 6.80 0.70 108.50 115.30 B B B O4' C1' N1 C C C 13 13 13 N 1 -4.27 0.70 121.90 117.63 B B B N3 C2 O2 C C C 13 13 13 N 1 7.45 0.70 108.50 115.95 B B B O4' C1' N1 C C C 15 15 15 N 1 7.03 0.80 101.50 108.53 B B B C3' C2' C1' A A A 16 16 16 N 1 3.05 0.50 110.60 113.65 B B B C2 N3 C4 A A A 16 16 16 N 1 3.15 0.50 117.70 120.85 B B B C5 C6 N1 A A A 16 16 16 N 1 -3.33 0.50 103.90 100.57 B B B C5 N7 C8 A A A 16 16 16 N 1 6.12 0.50 113.80 119.92 B B B N7 C8 N9 A A A 16 16 16 N 1 -5.18 0.40 105.80 100.62 B B B C8 N9 C4 A A A 16 16 16 N 1 -4.34 0.60 118.60 114.26 B B B N1 C6 N6 A A A 16 16 16 N 1 -3.47 0.40 120.30 116.83 B B B C6 N1 C2 C C C 17 17 17 N 1 7.44 0.70 108.50 115.94 B B B O4' C1' N1 U U U 19 19 19 N 1 6.23 0.70 108.50 114.73 B B B O4' C1' N1 U U U 20 20 20 N 1 4.72 0.70 108.50 113.22 B B B O4' C1' N9 G G G 21 21 21 N 1 A A C6 N1 A A 9 9 -0.052 0.007 1.351 1.299 N 1 B B C6 N1 A A 9 9 -0.051 0.007 1.351 1.300 N model building DYANA refinement AMBER refinement DYANA NMR STRUCTURE OF THE DIMER INITIATION COMPLEX OF HIV-1 GENOMIC RNA, MINIMIZED AVERAGE STRUCTURE 1 N N 1 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 23 A N3 C 23 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 23 A O2 C 23 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 23 A N4 C 23 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 22 A N3 C 22 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 22 A O2 C 22 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 22 A N4 C 22 1_555 hydrog WATSON-CRICK A C 3 A N3 C 3 1_555 A G 21 A N1 G 21 1_555 hydrog WATSON-CRICK A C 3 A N4 C 3 1_555 A G 21 A O6 G 21 1_555 hydrog WATSON-CRICK A C 3 A O2 C 3 1_555 A G 21 A N2 G 21 1_555 hydrog WATSON-CRICK A A 4 A N1 A 4 1_555 A U 20 A N3 U 20 1_555 hydrog WATSON-CRICK A A 4 A N6 A 4 1_555 A U 20 A O4 U 20 1_555 hydrog WATSON-CRICK A A 5 A N1 A 5 1_555 A U 19 A N3 U 19 1_555 hydrog WATSON-CRICK A A 5 A N6 A 5 1_555 A U 19 A O4 U 19 1_555 hydrog TYPE_28_PAIR A U 6 A N3 U 6 1_555 A G 18 A O6 G 18 1_555 hydrog TYPE_28_PAIR A U 6 A O2 U 6 1_555 A G 18 A N1 G 18 1_555 hydrog G-C PAIR A G 7 A N2 G 7 1_555 A C 17 A N3 C 17 1_555 hydrog A-A MISPAIR A A 9 A N6 A 9 1_555 B A 16 B N3 A 16 1_555 hydrog G-G MISPAIR A G 10 A N1 G 10 1_555 B G 14 B O6 G 14 1_555 hydrog WATSON-CRICK A G 10 A N1 G 10 1_555 B C 15 B N3 C 15 1_555 hydrog WATSON-CRICK A G 10 A N2 G 10 1_555 B C 15 B O2 C 15 1_555 hydrog WATSON-CRICK A G 10 A O6 G 10 1_555 B C 15 B N4 C 15 1_555 hydrog REVERSED WATSON-CRICK A G 12 A N1 G 12 1_555 B C 13 B O2 C 13 1_555 hydrog REVERSED WATSON-CRICK A G 12 A N2 G 12 1_555 B C 13 B N3 C 13 1_555 hydrog C-G PAIR A C 13 A N4 C 13 1_555 B G 12 B O6 G 12 1_555 hydrog G-C PAIR A G 14 A N1 G 14 1_555 B C 11 B N3 C 11 1_555 hydrog WATSON-CRICK A C 15 A N3 C 15 1_555 B G 10 B N1 G 10 1_555 hydrog WATSON-CRICK A C 15 A N4 C 15 1_555 B G 10 B O6 G 10 1_555 hydrog WATSON-CRICK A C 15 A O2 C 15 1_555 B G 10 B N2 G 10 1_555 hydrog A-A MISPAIR A A 16 A N3 A 16 1_555 B A 9 B N6 A 9 1_555 hydrog WATSON-CRICK B G 1 B N1 G 1 1_555 B C 23 B N3 C 23 1_555 hydrog WATSON-CRICK B G 1 B N2 G 1 1_555 B C 23 B O2 C 23 1_555 hydrog WATSON-CRICK B G 1 B O6 G 1 1_555 B C 23 B N4 C 23 1_555 hydrog WATSON-CRICK B G 2 B N1 G 2 1_555 B C 22 B N3 C 22 1_555 hydrog WATSON-CRICK B G 2 B N2 G 2 1_555 B C 22 B O2 C 22 1_555 hydrog WATSON-CRICK B G 2 B O6 G 2 1_555 B C 22 B N4 C 22 1_555 hydrog WATSON-CRICK B C 3 B N3 C 3 1_555 B G 21 B N1 G 21 1_555 hydrog WATSON-CRICK B C 3 B N4 C 3 1_555 B G 21 B O6 G 21 1_555 hydrog WATSON-CRICK B C 3 B O2 C 3 1_555 B G 21 B N2 G 21 1_555 hydrog WATSON-CRICK B A 4 B N1 A 4 1_555 B U 20 B N3 U 20 1_555 hydrog WATSON-CRICK B A 4 B N6 A 4 1_555 B U 20 B O4 U 20 1_555 hydrog WATSON-CRICK B A 5 B N1 A 5 1_555 B U 19 B N3 U 19 1_555 hydrog WATSON-CRICK B A 5 B N6 A 5 1_555 B U 19 B O4 U 19 1_555 hydrog TYPE_28_PAIR B U 6 B N3 U 6 1_555 B G 18 B O6 G 18 1_555 hydrog TYPE_28_PAIR B U 6 B O2 U 6 1_555 B G 18 B N1 G 18 1_555 hydrog G-C PAIR B G 7 B N2 G 7 1_555 B C 17 B N3 C 17 1_555 RNA RIBONUCLEIC ACID, HIV-1, DIMERIZATION, ENCAPSIDATION, RNA 1BAU PDB 1 1BAU 1 23 1BAU 1 23 1BAU A 1 1 23 1 23 1BAU 1 23 1BAU B 1 1 23 1 P 1