1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Mujeeb, A.
Clever, J.L.
Billeci, T.M.
James, T.L.
Parslow, T.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
5
432
436
10.1038/nsb0698-432
9628479
Structure of the dimer initiation complex of HIV-1 genomic RNA.
1998
10.2210/pdb1bau/pdb
pdb_00001bau
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
ENGINEERED SEQUENCE IN THE LOWER STEM REGION
7417.488
SL1 RNA DIMER
HIV-1 PACKAGING SIGNAL, RESIDUE 248-270
2
syn
polymer
no
no
GGCAAUGAAGCGCGCACGUUGCC
GGCAAUGAAGCGCGCACGUUGCC
A,B
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-15.175
1
19
A
1
A
23
0.761
A_G1:C23_A
1
-17.580
-0.330
-0.191
-0.182
-30.216
1
19
A
2
A
22
-3.038
A_G2:C22_A
2
-13.579
-0.118
-0.363
-0.038
-6.698
1
19
A
3
A
21
0.632
A_C3:G21_A
3
4.404
0.636
0.204
-0.240
-2.835
1
20
A
4
A
20
-6.203
A_A4:U20_A
4
-12.053
0.053
-0.427
-0.059
25.270
1
20
A
5
A
19
-4.092
A_A5:U19_A
5
-6.241
0.021
0.389
0.061
37.852
28
A
6
A
18
-5.908
A_U6:G18_A
6
-24.801
2.254
-0.694
-0.450
50.336
5
A
7
A
17
20.777
A_G7:C17_A
7
-5.592
3.543
-1.557
-1.605
-43.605
B
9
A
16
88.914
B_A9:A16_A
8
46.952
-5.587
-0.911
1.053
6.539
1
19
B
10
A
15
1.828
B_G10:C15_A
9
2.046
-1.209
0.946
-0.394
16.381
1
B
11
A
14
-9.791
B_C11:G14_A
10
-8.893
-1.067
-0.293
-0.723
4.461
B
12
A
13
11.309
B_G12:C13_A
11
0.153
0.617
0.695
-0.990
-2.309
1
22
B
13
A
12
11.538
B_C13:G12_A
12
-0.220
-0.008
0.714
-1.151
-6.685
1
19
B
15
A
10
3.417
B_C15:G10_A
13
0.532
0.997
1.296
-0.917
42.733
B
16
A
9
89.808
B_A16:A9_A
14
45.056
5.113
-0.559
0.672
-50.345
5
B
17
B
7
20.761
B_C17:G7_B
15
-5.584
-3.543
-1.557
-1.605
-37.862
28
B
18
B
6
-5.923
B_G18:U6_B
16
-24.810
-2.253
-0.694
-0.450
-25.279
1
20
B
19
B
5
-4.087
B_U19:A5_B
17
-6.219
-0.021
0.389
0.061
2.804
1
20
B
20
B
4
-6.205
B_U20:A4_B
18
-12.016
-0.053
-0.427
-0.059
6.685
1
19
B
21
B
3
0.630
B_G21:C3_B
19
4.392
-0.636
0.203
-0.240
30.230
1
19
B
22
B
2
-3.049
B_C22:G2_B
20
-13.570
0.118
-0.365
-0.038
15.165
1
19
B
23
B
1
0.755
B_C23:G1_B
21
-17.574
0.330
-0.191
-0.182
3.089
32.381
A
A
1
2
17.035
A
A
23
22
3.608
9.367
-0.541
-1.210
AA_G1G2:C22C23_AA
1
1.596
-2.903
30.991
-3.901
1.264
2.839
33.242
A
A
2
3
2.092
A
A
22
21
2.978
1.193
0.690
-0.646
AA_G2C3:G21C22_AA
2
-4.435
7.777
32.932
-1.307
-1.868
2.126
32.053
A
A
3
4
37.631
A
A
21
20
3.658
19.381
-0.660
-1.248
AA_C3A4:U20G21_AA
3
2.779
-5.395
25.503
-5.721
1.692
2.833
26.171
A
A
4
5
-5.443
A
A
20
19
2.704
-2.381
-0.662
-1.332
AA_A4A5:U19U20_AA
4
-11.420
26.111
23.468
-2.365
-1.309
2.766
38.664
A
A
5
6
7.457
A
A
19
18
3.013
4.913
-0.644
-1.019
AA_A5U6:G18U19_AA
5
4.841
-7.349
38.067
-2.077
1.503
3.118
46.334
A
A
6
7
-20.220
A
A
18
17
3.140
-15.603
2.395
-1.249
AA_U6G7:C17G18_AA
6
-4.867
6.308
43.505
-0.275
-3.453
1.540
46.109
A
B
7
9
34.277
A
A
17
16
4.054
24.856
-0.035
-3.108
AB_G7A9:A16C17_AA
7
-16.813
23.185
35.420
-6.065
-1.374
0.956
54.617
B
B
9
10
-24.297
A
A
16
15
3.258
-20.393
-3.594
-1.630
BB_A9G10:C15A16_AA
8
32.359
-38.553
39.744
-0.832
5.416
1.609
26.217
B
B
10
11
32.503
A
A
15
14
3.055
13.964
-1.280
-1.554
BB_G10C11:G14C15_AA
9
3.065
-7.133
22.033
-6.362
3.465
2.402
58.522
B
B
11
12
48.664
A
A
14
13
3.892
42.909
1.144
-0.250
BB_C11G12:C13G14_AA
10
-7.810
8.857
40.018
-2.917
-1.655
1.467
21.661
B
B
12
13
33.196
A
A
13
12
3.281
11.810
0.000
-2.394
BB_G12C13:G12C13_AA
11
-0.008
0.024
18.190
-10.079
-0.004
4.021
83.330
B
B
13
15
41.631
A
A
12
10
5.841
52.330
1.094
-1.653
BB_C13C15:G10G12_AA
12
8.588
-6.832
66.797
-3.488
-0.455
0.960
54.717
B
B
15
16
-24.071
A
A
10
9
3.280
-20.237
3.583
-1.619
BB_C15A16:A9G10_AA
13
-32.560
38.730
39.802
-0.822
-5.410
1.556
45.629
B
B
16
17
33.168
A
B
9
7
4.147
23.934
-0.307
-3.191
BB_A16C17:G7A9_BA
14
16.152
-22.384
35.716
-6.198
1.802
3.118
46.335
B
B
17
18
-20.218
B
B
7
6
3.139
-15.601
-2.396
-1.249
BB_C17G18:U6G7_BB
15
4.868
-6.308
43.507
-0.276
3.454
2.766
38.667
B
B
18
19
7.465
B
B
6
5
3.013
4.918
0.644
-1.019
BB_G18U19:A5U6_BB
16
-4.849
7.360
38.068
-2.077
-1.504
2.833
26.163
B
B
19
20
-5.447
B
B
5
4
2.704
-2.382
0.661
-1.332
BB_U19U20:A4A5_BB
17
11.416
-26.108
23.461
-2.365
1.312
2.127
32.053
B
B
20
21
37.619
B
B
4
3
3.657
19.376
0.660
-1.248
BB_U20G21:C3A4_BB
18
-2.775
5.388
25.507
-5.720
-1.691
2.838
33.244
B
B
21
22
2.076
B
B
3
2
2.977
1.184
-0.690
-0.645
BB_G21C22:G2C3_BB
19
4.444
-7.791
32.933
-1.304
1.869
3.088
32.382
B
B
22
23
17.053
B
B
2
1
3.608
9.377
0.541
-1.211
BB_C22C23:G1G2_BB
20
-1.605
2.919
30.989
-3.903
-1.267
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1999-04-27
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.name
Y
BNL
1998-04-18
REL
REL
RNA SYNTHESIZED USING T7 RNA TRANSCRIPTION
sample
INTERPROTON-DISTANCE INFORMATION (IN THE FORM OF NOE CROSS-PEAKS) WAS COLLECTED FROM 2D NOE EXPERIMENTS IN D2O AS WELL AS IN 90% H2O FOR NON-EXCHANGEABLE AND EXCHANGEABLE PROTONS, RESPECTIVELY. 2D NOE EXPERIMENTS WERE CARRIED OUT AT 50, 80, 200 AND 400 M SEC MIXING TIMES. COUPLING CONSTANTS AND SUGAR CONFORMATIONS WERE DEDUCED FROM DQF-COSY EXPERIMENTS.
LOWEST NMR CONSTRAINT VIOLATIONS AND LOWEST AMBER ENERGY.
34
1
2D NOE IN D2O
2D NOE IN WATER
DQF-COSY
100 mM NACL
6.4
298
K
RANDOMLY GENERATED STRUCTURES WERE FOLDED IN DYANA USING NMR DRIVEN STRUCTURAL RESTRAINTS. 34 STRUCTURES SHOWING LOWEST TARGET FUNCTION VALUES AND NO CONSISTENT VIOLATIONS OF NMR RESTRAINTS WERE INDIVIDUALLY SUBJECTED TO RESTRAINED ENERGY MINIMIZATION IN AMBER 4.1. FOR DETAILS OF REFINEMENT PROTOCOL, PLEASE REFER TO THE REFERENCE ABOVE.
D2O AND H2O
GUNTERT,WUTHRICH
refinement
DYANA
1.4
structure solution
DYANA
structure solution
Amber
4.1
600
Varian
UNITYPLUS
G
1
n
1
G
1
A
G
2
n
2
G
2
A
C
3
n
3
C
3
A
A
4
n
4
A
4
A
A
5
n
5
A
5
A
U
6
n
6
U
6
A
G
7
n
7
G
7
A
A
8
n
8
A
8
A
A
9
n
9
A
9
A
G
10
n
10
G
10
A
C
11
n
11
C
11
A
G
12
n
12
G
12
A
C
13
n
13
C
13
A
G
14
n
14
G
14
A
C
15
n
15
C
15
A
A
16
n
16
A
16
A
C
17
n
17
C
17
A
G
18
n
18
G
18
A
U
19
n
19
U
19
A
U
20
n
20
U
20
A
G
21
n
21
G
21
A
C
22
n
22
C
22
A
C
23
n
23
C
23
A
G
1
n
1
G
1
B
G
2
n
2
G
2
B
C
3
n
3
C
3
B
A
4
n
4
A
4
B
A
5
n
5
A
5
B
U
6
n
6
U
6
B
G
7
n
7
G
7
B
A
8
n
8
A
8
B
A
9
n
9
A
9
B
G
10
n
10
G
10
B
C
11
n
11
C
11
B
G
12
n
12
G
12
B
C
13
n
13
C
13
B
G
14
n
14
G
14
B
C
15
n
15
C
15
B
A
16
n
16
A
16
B
C
17
n
17
C
17
B
G
18
n
18
G
18
B
U
19
n
19
U
19
B
U
20
n
20
U
20
B
G
21
n
21
G
21
B
C
22
n
22
C
22
B
C
23
n
23
C
23
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
B
H21
O2
G
C
12
13
0.32
1
A
B
O2
H21
C
G
13
12
0.74
1
A
B
H1
N3
G
C
12
13
0.80
1
A
B
C2
H21
C
G
13
12
1.08
1
A
B
O6
H41
G
C
12
13
1.13
1
A
B
N3
H1
C
G
13
12
1.14
1
A
B
N3
H1
C
G
11
14
1.19
1
A
B
O2
H21
C
G
11
14
1.23
1
A
B
C4
H1
C
G
11
14
1.26
1
A
B
H1
H41
G
C
14
11
1.27
1
A
B
N2
O2
G
C
12
13
1.27
1
A
B
H41
C6
C
G
11
14
1.30
1
A
B
C2
H21
C
G
11
14
1.31
1
A
B
H41
O6
C
G
13
12
1.33
1
A
B
H21
C2
G
C
12
13
1.34
1
A
B
N3
H21
C
G
11
14
1.38
1
A
B
N4
H1
C
G
11
14
1.39
1
A
B
O6
H41
G
C
14
11
1.40
1
A
B
H41
N1
C
G
11
14
1.41
1
A
B
H41
O6
C
G
11
14
1.44
1
A
B
O2
N2
C
G
13
12
1.47
1
A
B
H1
N3
G
C
14
11
1.50
1
A
B
H21
O2
G
C
10
15
1.54
1
A
B
C5
H61
C
A
17
9
1.58
1
A
B
OP1
OP1
A
A
9
9
1.78
1
A
B
N1
N3
G
C
12
13
1.78
1
A
B
C5
N6
C
A
17
9
1.86
1
A
B
N4
O6
C
G
11
14
1.89
1
A
B
N3
N1
C
G
11
14
1.91
1
A
B
N6
C5
A
C
9
17
1.92
1
A
B
N3
N1
C
G
13
12
1.97
1
A
B
N4
N1
C
G
11
14
1.99
1
A
B
O2
N2
C
G
11
14
2.00
1
A
B
C6
N6
C
A
17
9
2.02
1
A
B
N3
N2
C
G
11
14
2.02
1
A
B
C2
N2
C
G
13
12
2.10
1
A
B
O6
N4
G
C
14
11
2.12
1
A
B
O6
N4
G
C
12
13
2.15
1
A
B
N4
C6
C
G
11
14
2.18
1
A
A
4
0.069
SIDE CHAIN
1
A
U
6
0.074
SIDE CHAIN
1
A
G
7
0.145
SIDE CHAIN
1
A
A
8
0.091
SIDE CHAIN
1
A
A
9
0.135
SIDE CHAIN
1
A
C
11
0.099
SIDE CHAIN
1
A
G
12
0.087
SIDE CHAIN
1
A
C
13
0.072
SIDE CHAIN
1
A
G
14
0.086
SIDE CHAIN
1
A
C
17
0.140
SIDE CHAIN
1
A
G
18
0.087
SIDE CHAIN
1
A
U
19
0.109
SIDE CHAIN
1
A
U
20
0.112
SIDE CHAIN
1
A
C
22
0.085
SIDE CHAIN
1
A
C
23
0.090
SIDE CHAIN
1
B
A
4
0.069
SIDE CHAIN
1
B
U
6
0.075
SIDE CHAIN
1
B
G
7
0.145
SIDE CHAIN
1
B
A
8
0.091
SIDE CHAIN
1
B
A
9
0.135
SIDE CHAIN
1
B
C
11
0.099
SIDE CHAIN
1
B
G
12
0.087
SIDE CHAIN
1
B
C
13
0.072
SIDE CHAIN
1
B
G
14
0.086
SIDE CHAIN
1
B
C
17
0.140
SIDE CHAIN
1
B
G
18
0.087
SIDE CHAIN
1
B
U
19
0.109
SIDE CHAIN
1
B
U
20
0.112
SIDE CHAIN
1
B
C
22
0.085
SIDE CHAIN
1
B
C
23
0.090
SIDE CHAIN
1
3.12
0.50
117.70
120.82
A
A
A
C5
C6
N1
A
A
A
4
4
4
N
1
4.34
0.70
108.50
112.84
A
A
A
O4'
C1'
N1
U
U
U
6
6
6
N
1
-2.91
0.40
106.40
103.49
A
A
A
C8
N9
C4
G
G
G
7
7
7
N
1
-9.27
1.00
102.60
93.33
A
A
A
C4'
C3'
C2'
A
A
A
8
8
8
N
1
5.88
0.80
101.50
107.38
A
A
A
C3'
C2'
C1'
A
A
A
8
8
8
N
1
8.22
1.30
114.00
122.22
A
A
A
N9
C1'
C2'
A
A
A
8
8
8
N
1
3.14
0.50
110.60
113.74
A
A
A
C2
N3
C4
A
A
A
8
8
8
N
1
3.24
0.50
117.70
120.94
A
A
A
C5
C6
N1
A
A
A
8
8
8
N
1
-6.81
0.60
118.60
111.79
A
A
A
N1
C6
N6
A
A
A
8
8
8
N
1
7.36
0.90
109.80
117.16
A
A
A
C5'
C4'
O4'
A
A
A
9
9
9
N
1
-3.38
0.50
103.90
100.52
A
A
A
C5
N7
C8
A
A
A
9
9
9
N
1
3.72
0.50
113.80
117.52
A
A
A
N7
C8
N9
A
A
A
9
9
9
N
1
-2.75
0.40
105.80
103.05
A
A
A
C8
N9
C4
A
A
A
9
9
9
N
1
-4.63
0.60
118.60
113.97
A
A
A
N1
C6
N6
A
A
A
9
9
9
N
1
9.41
0.70
108.50
117.91
A
A
A
O4'
C1'
N9
G
G
G
10
10
10
N
1
10.00
0.90
109.80
119.80
A
A
A
C5'
C4'
O4'
C
C
C
11
11
11
N
1
7.24
0.70
108.50
115.74
A
A
A
O4'
C1'
N1
C
C
C
11
11
11
N
1
4.76
0.60
118.90
123.66
A
A
A
N1
C2
O2
C
C
C
11
11
11
N
1
-5.20
0.70
121.90
116.70
A
A
A
N3
C2
O2
C
C
C
11
11
11
N
1
9.11
0.90
109.80
118.91
A
A
A
C5'
C4'
O4'
C
C
C
13
13
13
N
1
6.77
0.70
108.50
115.27
A
A
A
O4'
C1'
N1
C
C
C
13
13
13
N
1
-4.30
0.70
121.90
117.60
A
A
A
N3
C2
O2
C
C
C
13
13
13
N
1
7.43
0.70
108.50
115.93
A
A
A
O4'
C1'
N1
C
C
C
15
15
15
N
1
7.05
0.80
101.50
108.55
A
A
A
C3'
C2'
C1'
A
A
A
16
16
16
N
1
3.10
0.50
110.60
113.70
A
A
A
C2
N3
C4
A
A
A
16
16
16
N
1
3.21
0.50
117.70
120.91
A
A
A
C5
C6
N1
A
A
A
16
16
16
N
1
-3.36
0.50
103.90
100.54
A
A
A
C5
N7
C8
A
A
A
16
16
16
N
1
6.16
0.50
113.80
119.96
A
A
A
N7
C8
N9
A
A
A
16
16
16
N
1
-5.21
0.40
105.80
100.59
A
A
A
C8
N9
C4
A
A
A
16
16
16
N
1
-4.29
0.60
118.60
114.31
A
A
A
N1
C6
N6
A
A
A
16
16
16
N
1
-3.46
0.40
120.30
116.84
A
A
A
C6
N1
C2
C
C
C
17
17
17
N
1
7.41
0.70
108.50
115.91
A
A
A
O4'
C1'
N1
U
U
U
19
19
19
N
1
6.22
0.70
108.50
114.72
A
A
A
O4'
C1'
N1
U
U
U
20
20
20
N
1
4.73
0.70
108.50
113.23
A
A
A
O4'
C1'
N9
G
G
G
21
21
21
N
1
3.07
0.50
117.70
120.77
B
B
B
C5
C6
N1
A
A
A
4
4
4
N
1
4.39
0.70
108.50
112.89
B
B
B
O4'
C1'
N1
U
U
U
6
6
6
N
1
-2.86
0.40
106.40
103.54
B
B
B
C8
N9
C4
G
G
G
7
7
7
N
1
-9.30
1.00
102.60
93.30
B
B
B
C4'
C3'
C2'
A
A
A
8
8
8
N
1
5.91
0.80
101.50
107.41
B
B
B
C3'
C2'
C1'
A
A
A
8
8
8
N
1
8.22
1.30
114.00
122.22
B
B
B
N9
C1'
C2'
A
A
A
8
8
8
N
1
3.17
0.50
110.60
113.77
B
B
B
C2
N3
C4
A
A
A
8
8
8
N
1
3.24
0.50
117.70
120.94
B
B
B
C5
C6
N1
A
A
A
8
8
8
N
1
-6.82
0.60
118.60
111.78
B
B
B
N1
C6
N6
A
A
A
8
8
8
N
1
7.35
0.90
109.80
117.15
B
B
B
C5'
C4'
O4'
A
A
A
9
9
9
N
1
-3.34
0.50
103.90
100.56
B
B
B
C5
N7
C8
A
A
A
9
9
9
N
1
3.71
0.50
113.80
117.51
B
B
B
N7
C8
N9
A
A
A
9
9
9
N
1
-2.78
0.40
105.80
103.02
B
B
B
C8
N9
C4
A
A
A
9
9
9
N
1
-4.68
0.60
118.60
113.92
B
B
B
N1
C6
N6
A
A
A
9
9
9
N
1
9.30
0.70
108.50
117.80
B
B
B
O4'
C1'
N9
G
G
G
10
10
10
N
1
10.04
0.90
109.80
119.84
B
B
B
C5'
C4'
O4'
C
C
C
11
11
11
N
1
7.22
0.70
108.50
115.72
B
B
B
O4'
C1'
N1
C
C
C
11
11
11
N
1
4.75
0.60
118.90
123.65
B
B
B
N1
C2
O2
C
C
C
11
11
11
N
1
-5.25
0.70
121.90
116.65
B
B
B
N3
C2
O2
C
C
C
11
11
11
N
1
9.18
0.90
109.80
118.98
B
B
B
C5'
C4'
O4'
C
C
C
13
13
13
N
1
6.80
0.70
108.50
115.30
B
B
B
O4'
C1'
N1
C
C
C
13
13
13
N
1
-4.27
0.70
121.90
117.63
B
B
B
N3
C2
O2
C
C
C
13
13
13
N
1
7.45
0.70
108.50
115.95
B
B
B
O4'
C1'
N1
C
C
C
15
15
15
N
1
7.03
0.80
101.50
108.53
B
B
B
C3'
C2'
C1'
A
A
A
16
16
16
N
1
3.05
0.50
110.60
113.65
B
B
B
C2
N3
C4
A
A
A
16
16
16
N
1
3.15
0.50
117.70
120.85
B
B
B
C5
C6
N1
A
A
A
16
16
16
N
1
-3.33
0.50
103.90
100.57
B
B
B
C5
N7
C8
A
A
A
16
16
16
N
1
6.12
0.50
113.80
119.92
B
B
B
N7
C8
N9
A
A
A
16
16
16
N
1
-5.18
0.40
105.80
100.62
B
B
B
C8
N9
C4
A
A
A
16
16
16
N
1
-4.34
0.60
118.60
114.26
B
B
B
N1
C6
N6
A
A
A
16
16
16
N
1
-3.47
0.40
120.30
116.83
B
B
B
C6
N1
C2
C
C
C
17
17
17
N
1
7.44
0.70
108.50
115.94
B
B
B
O4'
C1'
N1
U
U
U
19
19
19
N
1
6.23
0.70
108.50
114.73
B
B
B
O4'
C1'
N1
U
U
U
20
20
20
N
1
4.72
0.70
108.50
113.22
B
B
B
O4'
C1'
N9
G
G
G
21
21
21
N
1
A
A
C6
N1
A
A
9
9
-0.052
0.007
1.351
1.299
N
1
B
B
C6
N1
A
A
9
9
-0.051
0.007
1.351
1.300
N
model building
DYANA
refinement
AMBER
refinement
DYANA
NMR STRUCTURE OF THE DIMER INITIATION COMPLEX OF HIV-1 GENOMIC RNA, MINIMIZED AVERAGE STRUCTURE
1
N
N
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
23
A
N3
C
23
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
23
A
O2
C
23
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
23
A
N4
C
23
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
A
C
22
A
N3
C
22
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
A
C
22
A
O2
C
22
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
A
C
22
A
N4
C
22
1_555
hydrog
WATSON-CRICK
A
C
3
A
N3
C
3
1_555
A
G
21
A
N1
G
21
1_555
hydrog
WATSON-CRICK
A
C
3
A
N4
C
3
1_555
A
G
21
A
O6
G
21
1_555
hydrog
WATSON-CRICK
A
C
3
A
O2
C
3
1_555
A
G
21
A
N2
G
21
1_555
hydrog
WATSON-CRICK
A
A
4
A
N1
A
4
1_555
A
U
20
A
N3
U
20
1_555
hydrog
WATSON-CRICK
A
A
4
A
N6
A
4
1_555
A
U
20
A
O4
U
20
1_555
hydrog
WATSON-CRICK
A
A
5
A
N1
A
5
1_555
A
U
19
A
N3
U
19
1_555
hydrog
WATSON-CRICK
A
A
5
A
N6
A
5
1_555
A
U
19
A
O4
U
19
1_555
hydrog
TYPE_28_PAIR
A
U
6
A
N3
U
6
1_555
A
G
18
A
O6
G
18
1_555
hydrog
TYPE_28_PAIR
A
U
6
A
O2
U
6
1_555
A
G
18
A
N1
G
18
1_555
hydrog
G-C PAIR
A
G
7
A
N2
G
7
1_555
A
C
17
A
N3
C
17
1_555
hydrog
A-A MISPAIR
A
A
9
A
N6
A
9
1_555
B
A
16
B
N3
A
16
1_555
hydrog
G-G MISPAIR
A
G
10
A
N1
G
10
1_555
B
G
14
B
O6
G
14
1_555
hydrog
WATSON-CRICK
A
G
10
A
N1
G
10
1_555
B
C
15
B
N3
C
15
1_555
hydrog
WATSON-CRICK
A
G
10
A
N2
G
10
1_555
B
C
15
B
O2
C
15
1_555
hydrog
WATSON-CRICK
A
G
10
A
O6
G
10
1_555
B
C
15
B
N4
C
15
1_555
hydrog
REVERSED WATSON-CRICK
A
G
12
A
N1
G
12
1_555
B
C
13
B
O2
C
13
1_555
hydrog
REVERSED WATSON-CRICK
A
G
12
A
N2
G
12
1_555
B
C
13
B
N3
C
13
1_555
hydrog
C-G PAIR
A
C
13
A
N4
C
13
1_555
B
G
12
B
O6
G
12
1_555
hydrog
G-C PAIR
A
G
14
A
N1
G
14
1_555
B
C
11
B
N3
C
11
1_555
hydrog
WATSON-CRICK
A
C
15
A
N3
C
15
1_555
B
G
10
B
N1
G
10
1_555
hydrog
WATSON-CRICK
A
C
15
A
N4
C
15
1_555
B
G
10
B
O6
G
10
1_555
hydrog
WATSON-CRICK
A
C
15
A
O2
C
15
1_555
B
G
10
B
N2
G
10
1_555
hydrog
A-A MISPAIR
A
A
16
A
N3
A
16
1_555
B
A
9
B
N6
A
9
1_555
hydrog
WATSON-CRICK
B
G
1
B
N1
G
1
1_555
B
C
23
B
N3
C
23
1_555
hydrog
WATSON-CRICK
B
G
1
B
N2
G
1
1_555
B
C
23
B
O2
C
23
1_555
hydrog
WATSON-CRICK
B
G
1
B
O6
G
1
1_555
B
C
23
B
N4
C
23
1_555
hydrog
WATSON-CRICK
B
G
2
B
N1
G
2
1_555
B
C
22
B
N3
C
22
1_555
hydrog
WATSON-CRICK
B
G
2
B
N2
G
2
1_555
B
C
22
B
O2
C
22
1_555
hydrog
WATSON-CRICK
B
G
2
B
O6
G
2
1_555
B
C
22
B
N4
C
22
1_555
hydrog
WATSON-CRICK
B
C
3
B
N3
C
3
1_555
B
G
21
B
N1
G
21
1_555
hydrog
WATSON-CRICK
B
C
3
B
N4
C
3
1_555
B
G
21
B
O6
G
21
1_555
hydrog
WATSON-CRICK
B
C
3
B
O2
C
3
1_555
B
G
21
B
N2
G
21
1_555
hydrog
WATSON-CRICK
B
A
4
B
N1
A
4
1_555
B
U
20
B
N3
U
20
1_555
hydrog
WATSON-CRICK
B
A
4
B
N6
A
4
1_555
B
U
20
B
O4
U
20
1_555
hydrog
WATSON-CRICK
B
A
5
B
N1
A
5
1_555
B
U
19
B
N3
U
19
1_555
hydrog
WATSON-CRICK
B
A
5
B
N6
A
5
1_555
B
U
19
B
O4
U
19
1_555
hydrog
TYPE_28_PAIR
B
U
6
B
N3
U
6
1_555
B
G
18
B
O6
G
18
1_555
hydrog
TYPE_28_PAIR
B
U
6
B
O2
U
6
1_555
B
G
18
B
N1
G
18
1_555
hydrog
G-C PAIR
B
G
7
B
N2
G
7
1_555
B
C
17
B
N3
C
17
1_555
RNA
RIBONUCLEIC ACID, HIV-1, DIMERIZATION, ENCAPSIDATION, RNA
1BAU
PDB
1
1BAU
1
23
1BAU
1
23
1BAU
A
1
1
23
1
23
1BAU
1
23
1BAU
B
1
1
23
1
P 1