1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Clubb, R.T. Connolly, K.M. Wojciak, J.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Struct.Biol. NSBIEW 2024 1072-8368 5 546 550 10.1038/799 9665166 Site-specific DNA binding using a variation of the double stranded RNA binding motif. 1998 10.2210/pdb1bb8/pdb pdb_00001bb8 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 8462.620 INTEGRASE N-TERMINAL DNA BINDING DOMAIN 1 man polymer no no EKRRDNRGRILKTGESQRKDGRYLYKYIDSFGEPQFVYSWKLVATDRVPAGKRDCISLREKIAELQKDIHD EKRRDNRGRILKTGESQRKDGRYLYKYIDSFGEPQFVYSWKLVATDRVPAGKRDCISLREKIAELQKDIHD A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Enterococcus Escherichia Escherichia coli sample BL21 1351 Enterococcus faecalis CYTOPLASM 469008 Escherichia coli BL21(DE3) BL21 (DE3) PLASMID PET11A database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1998-11-25 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site Y BNL 1998-04-29 REL THREE AND FOUR-DIMENSIONAL HETERONUCLEAR NMR EXPERIMENTS LEAST RESTRAINT VIOLATION 100 25 NOESY ETC. 6.0 300 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. DISTANCE GEOMETRY AND SIMULATED ANNEALING H2O BRUNGER refinement X-PLOR 3.843 structure solution X-PLOR 500 Bruker DRX 600 Bruker DRX GLU 3 n 1 GLU 3 A LYS 4 n 2 LYS 4 A ARG 5 n 3 ARG 5 A ARG 6 n 4 ARG 6 A ASP 7 n 5 ASP 7 A ASN 8 n 6 ASN 8 A ARG 9 n 7 ARG 9 A GLY 10 n 8 GLY 10 A ARG 11 n 9 ARG 11 A ILE 12 n 10 ILE 12 A LEU 13 n 11 LEU 13 A LYS 14 n 12 LYS 14 A THR 15 n 13 THR 15 A GLY 16 n 14 GLY 16 A GLU 17 n 15 GLU 17 A SER 18 n 16 SER 18 A GLN 19 n 17 GLN 19 A ARG 20 n 18 ARG 20 A LYS 21 n 19 LYS 21 A ASP 22 n 20 ASP 22 A GLY 23 n 21 GLY 23 A ARG 24 n 22 ARG 24 A TYR 25 n 23 TYR 25 A LEU 26 n 24 LEU 26 A TYR 27 n 25 TYR 27 A LYS 28 n 26 LYS 28 A TYR 29 n 27 TYR 29 A ILE 30 n 28 ILE 30 A ASP 31 n 29 ASP 31 A SER 32 n 30 SER 32 A PHE 33 n 31 PHE 33 A GLY 34 n 32 GLY 34 A GLU 35 n 33 GLU 35 A PRO 36 n 34 PRO 36 A GLN 37 n 35 GLN 37 A PHE 38 n 36 PHE 38 A VAL 39 n 37 VAL 39 A TYR 40 n 38 TYR 40 A SER 41 n 39 SER 41 A TRP 42 n 40 TRP 42 A LYS 43 n 41 LYS 43 A LEU 44 n 42 LEU 44 A VAL 45 n 43 VAL 45 A ALA 46 n 44 ALA 46 A THR 47 n 45 THR 47 A ASP 48 n 46 ASP 48 A ARG 49 n 47 ARG 49 A VAL 50 n 48 VAL 50 A PRO 51 n 49 PRO 51 A ALA 52 n 50 ALA 52 A GLY 53 n 51 GLY 53 A LYS 54 n 52 LYS 54 A ARG 55 n 53 ARG 55 A ASP 56 n 54 ASP 56 A CYS 57 n 55 CYS 57 A ILE 58 n 56 ILE 58 A SER 59 n 57 SER 59 A LEU 60 n 58 LEU 60 A ARG 61 n 59 ARG 61 A GLU 62 n 60 GLU 62 A LYS 63 n 61 LYS 63 A ILE 64 n 62 ILE 64 A ALA 65 n 63 ALA 65 A GLU 66 n 64 GLU 66 A LEU 67 n 65 LEU 67 A GLN 68 n 66 GLN 68 A LYS 69 n 67 LYS 69 A ASP 70 n 68 ASP 70 A ILE 71 n 69 ILE 71 A HIS 72 n 70 HIS 72 A ASP 73 n 71 ASP 73 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A H OD2 VAL ASP 45 48 1.42 2 A A O H LEU ILE 60 64 1.45 2 A A OD1 H ASP ARG 7 11 1.48 2 A A HH11 OH ARG TYR 11 25 1.56 2 A A H OD2 LEU ASP 44 48 1.57 3 A A O HE22 GLU GLN 35 37 1.47 3 A A O H LEU ILE 60 64 1.53 3 A A OD1 H ASP ARG 7 11 1.53 4 A A H OD2 VAL ASP 45 48 1.44 4 A A HH11 O ARG VAL 49 50 1.55 4 A A H OE1 ASN GLN 8 19 1.57 5 A A H O TYR SER 25 41 1.54 6 A A O H LEU ILE 60 64 1.50 7 A A OD2 HE21 ASP GLN 31 37 1.42 8 A A H HG TRP CYS 42 57 1.34 8 A A O H LYS LEU 63 67 1.50 9 A A OD1 H ASP ARG 7 11 1.50 9 A A O HE22 GLU GLN 35 37 1.57 10 A A OD2 HE ASP ARG 22 24 1.42 11 A A O HE22 GLU GLN 35 37 1.56 12 A A O HE22 GLU GLN 35 37 1.51 12 A A OD1 H ASP ARG 7 11 1.58 12 A A O H PRO LYS 51 54 1.60 13 A A O H ALA LYS 52 54 1.50 13 A A OD2 HH22 ASP ARG 7 11 1.56 14 A A HH21 HE1 ARG TRP 24 42 1.33 15 A A OD1 H ASP ARG 7 11 1.52 15 A A O HE22 GLU GLN 35 37 1.53 15 A A O HZ3 ILE LYS 58 63 1.60 15 A A O H SER LYS 59 63 1.60 16 A A O HE22 GLU GLN 35 37 1.45 17 A A O H LYS LEU 63 67 1.54 18 A A H OE2 ASP GLU 31 35 1.49 19 A A O HE22 GLU GLN 35 37 1.49 19 A A OD1 H ASP GLY 7 10 1.56 19 A A O H LEU ILE 60 64 1.60 20 A A HZ2 H LYS CYS 43 57 1.33 20 A A HZ2 O LYS CYS 43 57 1.53 20 A A H OE1 ASN GLN 8 19 1.53 20 A A H OD2 VAL ASP 45 48 1.57 20 A A OD1 H ASP GLY 7 10 1.58 21 A A HH11 O ARG VAL 49 50 1.50 21 A A O H LYS LEU 63 67 1.51 21 A A H OE1 ASN GLN 8 19 1.54 22 A A O HE22 GLU GLN 35 37 1.46 22 A A O H PRO LYS 51 54 1.52 22 A A H OD2 VAL ASP 45 48 1.56 23 A A OD2 HH22 ASP ARG 22 24 1.54 24 A A O HE22 GLU GLN 35 37 1.36 25 A A HH11 HH21 ARG ARG 20 24 1.20 25 A A HZ2 H LYS CYS 43 57 1.33 25 A A OD1 HE21 ASP GLN 31 37 1.43 25 A A O H LYS LEU 63 67 1.54 1 A ARG 9 -101.30 -71.67 1 A SER 32 -62.11 6.28 1 A SER 41 -170.78 136.50 1 A HIS 72 -151.65 37.14 2 A LYS 4 -152.61 -113.92 2 A SER 32 -59.79 -2.82 2 A SER 41 -172.27 145.47 2 A ALA 46 -55.15 -7.04 3 A HIS 72 -156.52 15.84 4 A ARG 9 -95.57 -77.38 4 A SER 41 -171.66 146.19 4 A HIS 72 -144.76 -59.98 5 A SER 41 -171.26 143.60 5 A ALA 52 -48.96 150.50 6 A ARG 9 -104.77 -81.75 7 A LYS 4 -155.28 -141.73 7 A ASP 7 -81.57 -159.96 7 A ARG 9 -92.18 -86.01 7 A ASP 56 -49.53 162.33 8 A ARG 5 -94.70 -148.03 8 A SER 41 -174.31 146.31 9 A SER 32 -60.55 1.46 10 A ARG 9 -103.98 -80.13 10 A SER 32 -66.20 6.06 10 A SER 59 -57.97 174.77 10 A HIS 72 -156.45 -42.13 11 A LYS 4 -86.11 44.24 11 A ASP 7 -137.56 -103.72 11 A ASN 8 -66.46 -80.93 11 A SER 32 -64.10 0.74 11 A SER 41 -172.11 148.61 11 A HIS 72 -158.18 13.52 12 A SER 32 -58.90 0.30 12 A ASP 48 -69.51 -174.43 13 A ARG 9 -100.20 -73.39 13 A PRO 51 -82.09 -112.88 13 A ALA 52 -55.00 -149.76 13 A HIS 72 -85.28 -127.39 14 A SER 32 -59.87 -3.98 14 A SER 41 -171.77 148.62 14 A ALA 52 -45.36 151.60 14 A ARG 55 -78.08 -99.10 15 A ASP 7 -123.58 -169.57 15 A SER 32 -60.73 3.33 15 A GLN 68 -78.82 -72.57 16 A SER 32 -59.28 -0.43 16 A ALA 52 -45.33 159.55 16 A ASP 56 -52.10 176.48 17 A ASP 7 -130.98 -159.59 17 A SER 32 -63.01 0.36 17 A CYS 57 -172.46 -174.99 18 A SER 32 -57.08 -3.94 19 A ASN 8 -69.17 1.64 19 A SER 32 -53.66 -8.59 19 A HIS 72 -151.43 -56.28 20 A SER 32 -64.09 0.59 20 A ILE 71 -84.97 44.23 20 A HIS 72 -156.90 41.69 21 A ILE 71 -89.88 44.32 21 A HIS 72 -153.59 37.41 22 A ASP 7 -74.40 -167.36 22 A ARG 9 -101.30 -87.13 22 A SER 32 -58.20 -2.18 22 A ASP 48 -69.40 -179.69 22 A ASP 56 -43.78 154.81 22 A HIS 72 -148.61 -33.34 23 A ASP 7 -104.09 -167.66 23 A SER 32 -60.35 5.71 24 A ARG 9 -96.41 -75.79 24 A SER 41 -172.34 137.74 25 A ALA 52 -44.84 153.32 25 A SER 59 -59.19 176.04 model building X-PLOR 3.843 refinement X-PLOR 3.843 phasing X-PLOR 3.843 N-TERMINAL DNA BINDING DOMAIN FROM TN916 INTEGRASE, NMR, 25 STRUCTURES 1 Y N A LEU 60 A LEU 58 HELX_P A ASP 70 A ASP 68 1 1 11 INTEGRASE INTEGRASE, DNA BINDING, TRANSPOSITION TNR6_ENTFA UNP 1 1 P22886 MSEKRRDNRGRILKTGESQRKDGRYLYKYIDSFGEPQFVYSWKLVATDRVPAGKRDCISLREKIAELQKDIHDGIDVVGK KMTLCQLYAKQNAQRPKVRKNTETGRKYLMDILKKDKLGVRSIDSIKPSDAKEWAIRMSENGYAYQTINNYKRSLKASFY IAIQDDCVRKNPFDFQLKAVLDDDTVPKTVLTEEQEEKLLAFAKADKTYSKNYDEILILLKTGLRISEFGGLTLPDLDFE NRLVNIDHQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFKRVLANRKNDKRVEIDGYSDFLFLNRKNYPKVASDYNG MMKGLVKKYNKYNEDKLPHITPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNYYAHATFDSAMAEMKRLNKEKQQ ERLVA 3 73 1BB8 3 73 P22886 A 1 1 71 3 parallel anti-parallel A SER 18 A SER 16 A GLN 19 A GLN 17 A TYR 25 A TYR 23 A ILE 30 A ILE 28 A PRO 36 A PRO 34 A SER 41 A SER 39 1 P 1