1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Asensio, J.L.
Brown, T.
Lane, A.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
26
3677
3686
10.1093/nar/26.16.3677
9685482
Comparison of the solution structures of intramolecular DNA triple helices containing adjacent and non-adjacent CG.C+ triplets.
1998
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
275
811
The Contribution of Cytosine Protonation to the Stability of Parallel DNA Triple Helices
1998
10.2210/pdb1bce/pdb
pdb_00001bce
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
NON-NUCLEOTIDE LINKERS BETWEEN RESIDUES 6 AND 7 AND BETWEEN 12 AND 13
1866.281
DNA (5'-D(*AP*AP*GP*GP*AP*A)-3')
1
syn
polymer
NON-NUCLEOTIDE LINKERS BETWEEN RESIDUES 6 AND 7 AND BETWEEN 12 AND 13
1750.177
DNA (5'-D(*TP*TP*CP*CP*TP*T)-3')
2
syn
polymer
no
no
(DA)(DA)(DG)(DG)(DA)(DA)
AAGGAA
A
polydeoxyribonucleotide
no
no
(DT)(DT)(DC)(DC)(DT)(DT)
TTCCTT
B,C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
-13.415
1
20
A
1
B
12
7.084
A_DA1:DT12_B
1
-9.701
-0.645
-0.252
-0.206
-0.975
1
20
A
2
B
11
3.933
A_DA2:DT11_B
2
-12.930
-0.474
0.360
-0.226
2.649
1
19
A
3
B
10
-1.966
A_DG3:DC10_B
3
-12.213
-0.688
0.418
-0.194
5.449
1
19
A
4
B
9
-2.611
A_DG4:DC9_B
4
-11.012
0.460
0.303
-0.015
-6.292
1
20
A
5
B
8
-4.520
A_DA5:DT8_B
5
-21.051
-0.141
-0.051
-0.056
-2.692
1
20
A
6
B
7
-0.491
A_DA6:DT7_B
6
-18.296
-0.417
0.860
-0.323
2.613
33.040
A
A
1
2
8.766
B
B
12
11
2.805
4.947
0.219
-0.635
AA_DA1DA2:DT11DT12_BB
1
-5.346
9.473
32.250
-1.819
-1.144
3.057
31.737
A
A
2
3
-2.401
B
B
11
10
3.004
-1.313
0.049
-1.360
AA_DA2DG3:DC10DT11_BB
2
0.205
-0.375
31.710
-2.263
-0.055
2.993
35.929
A
A
3
4
3.357
B
B
10
9
3.042
2.070
0.281
-0.895
AA_DG3DG4:DC9DC10_BB
3
0.787
-1.277
35.863
-1.723
-0.353
2.812
32.875
A
A
4
5
13.744
B
B
9
8
3.229
7.691
0.267
-1.492
AA_DG4DA5:DT8DC9_BB
4
4.008
-7.162
31.741
-3.873
0.173
2.523
32.396
A
A
5
6
8.514
B
B
8
7
2.871
4.711
0.638
-1.191
AA_DA5DA6:DT7DT8_BB
5
-5.626
10.168
31.576
-2.828
-1.972
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1998-08-12
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.name
ENSEMBLE OF 10 STRUCTURES
ENSEMBLE OF 10 STRUCTURES
Y
BNL
1998-04-29
REL
REL
CHEMICAL SYNTHESIS
sample
CHEMICAL SYNTHESIS
sample
THE STRUCTURES WERE BASED ON ANALYSIS OF SCALAR COUPLING CONSTANTS AND DISTANCES DERIVED FROM TIME-DEPENDENT NOES USING RESTRAINED MOLECULAR DYNAMICS.
ENERGY, NMR R FACTORS
50
10
NOESY
DQF-COSY
0.1M
5
1
ATMOSPHERE
303
K
RESTRAINED MD/SIMULATED ANNEALING PROTOCOL
RESTRAINED MOLECULAR DYNAMICS
H2O
MSI
refinement
Discover
structure solution
Discover
500
Varian
UNITY
600
Varian
UNITYPLUS
A
1
n
1
DA
1
A
A
2
n
2
DA
2
A
G
3
n
3
DG
3
A
G
4
n
4
DG
4
A
A
5
n
5
DA
5
A
A
6
n
6
DA
6
A
T
7
n
1
DT
7
B
T
8
n
2
DT
8
B
C
9
n
3
DC
9
B
C
10
n
4
DC
10
B
T
11
n
5
DT
11
B
T
12
n
6
DT
12
B
T
13
n
1
DT
13
C
T
14
n
2
DT
14
C
C
15
n
3
DC
15
C
C
16
n
4
DC
16
C
T
17
n
5
DT
17
C
T
18
n
6
DT
18
C
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
3.85
0.30
108.30
112.15
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
4.66
0.30
108.30
112.96
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
1
4.55
0.30
108.30
112.85
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
1
2.38
0.30
108.30
110.68
B
B
B
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
2.22
0.30
108.30
110.52
B
B
B
O4'
C1'
N1
DC
DC
DC
10
10
10
N
1
2.12
0.30
108.30
110.42
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
1
3.77
0.30
108.30
112.07
C
C
C
O4'
C1'
N1
DC
DC
DC
15
15
15
N
2
4.49
0.30
108.30
112.79
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
2
2.44
0.30
108.30
110.74
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
2
4.95
0.30
108.30
113.25
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
2
2.74
0.30
108.30
111.04
B
B
B
O4'
C1'
N1
DT
DT
DT
8
8
8
N
2
2.24
0.30
108.30
110.54
B
B
B
O4'
C1'
N1
DC
DC
DC
9
9
9
N
2
2.31
0.30
108.30
110.61
B
B
B
O4'
C1'
N1
DT
DT
DT
11
11
11
N
2
2.45
0.30
108.30
110.75
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
2
5.55
0.30
108.30
113.85
C
C
C
O4'
C1'
N1
DC
DC
DC
15
15
15
N
3
6.32
0.30
108.30
114.62
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
3
4.72
0.30
108.30
113.02
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
3
2.10
0.30
108.30
110.40
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
3
2.16
0.30
108.30
110.46
B
B
B
O4'
C1'
N1
DT
DT
DT
8
8
8
N
3
2.51
0.30
108.30
110.81
B
B
B
O4'
C1'
N1
DC
DC
DC
9
9
9
N
3
1.83
0.30
108.30
110.13
B
B
B
O4'
C1'
N1
DC
DC
DC
10
10
10
N
3
2.06
0.30
108.30
110.36
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
3
4.47
0.30
108.30
112.77
C
C
C
O4'
C1'
N1
DC
DC
DC
15
15
15
N
3
1.91
0.30
108.30
110.21
C
C
C
O4'
C1'
N1
DT
DT
DT
17
17
17
N
4
4.35
0.30
108.30
112.65
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
4
1.91
0.30
108.30
110.21
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
4
5.14
0.30
108.30
113.44
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
4
2.42
0.30
108.30
110.72
B
B
B
O4'
C1'
N1
DC
DC
DC
9
9
9
N
4
1.87
0.30
108.30
110.17
B
B
B
O4'
C1'
N1
DC
DC
DC
10
10
10
N
4
2.13
0.30
108.30
110.43
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
4
2.32
0.30
108.30
110.62
C
C
C
O4'
C1'
N1
DT
DT
DT
13
13
13
N
4
2.43
0.30
108.30
110.73
C
C
C
O4'
C1'
N1
DT
DT
DT
14
14
14
N
4
2.96
0.30
108.30
111.26
C
C
C
O4'
C1'
N1
DC
DC
DC
15
15
15
N
4
2.09
0.30
108.30
110.39
C
C
C
O4'
C1'
N1
DC
DC
DC
16
16
16
N
4
2.88
0.30
108.30
111.18
C
C
C
O4'
C1'
N1
DT
DT
DT
18
18
18
N
5
4.81
0.30
108.30
113.11
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
5
4.32
0.30
108.30
112.62
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
5
4.90
0.30
108.30
113.20
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
5
2.36
0.30
108.30
110.66
B
B
B
O4'
C1'
N1
DC
DC
DC
9
9
9
N
5
2.12
0.30
108.30
110.42
B
B
B
O4'
C1'
N1
DT
DT
DT
11
11
11
N
5
2.31
0.30
108.30
110.61
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
5
4.36
0.30
108.30
112.66
C
C
C
O4'
C1'
N1
DC
DC
DC
15
15
15
N
5
2.12
0.30
108.30
110.42
C
C
C
O4'
C1'
N1
DT
DT
DT
17
17
17
N
5
2.45
0.30
108.30
110.75
C
C
C
O4'
C1'
N1
DT
DT
DT
18
18
18
N
6
3.18
0.30
108.30
111.48
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
6
2.79
0.30
108.30
111.09
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
6
4.78
0.30
108.30
113.08
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
6
-3.78
0.60
122.90
119.12
B
B
B
C6
C5
C7
DT
DT
DT
8
8
8
N
6
1.80
0.30
108.30
110.10
B
B
B
O4'
C1'
N1
DC
DC
DC
9
9
9
N
6
2.29
0.30
108.30
110.59
B
B
B
O4'
C1'
N1
DT
DT
DT
11
11
11
N
6
2.26
0.30
108.30
110.56
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
6
2.96
0.30
108.30
111.26
C
C
C
O4'
C1'
N1
DC
DC
DC
15
15
15
N
6
1.88
0.30
108.30
110.18
C
C
C
O4'
C1'
N1
DC
DC
DC
16
16
16
N
6
1.87
0.30
108.30
110.17
C
C
C
O4'
C1'
N1
DT
DT
DT
17
17
17
N
6
2.45
0.30
108.30
110.75
C
C
C
O4'
C1'
N1
DT
DT
DT
18
18
18
N
7
3.99
0.30
108.30
112.29
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
7
2.95
0.30
108.30
111.25
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
7
4.83
0.30
108.30
113.13
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
7
2.35
0.30
108.30
110.65
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
7
2.53
0.30
108.30
110.83
B
B
B
O4'
C1'
N1
DT
DT
DT
8
8
8
N
7
3.16
0.30
108.30
111.46
B
B
B
O4'
C1'
N1
DC
DC
DC
9
9
9
N
7
2.22
0.30
108.30
110.52
B
B
B
O4'
C1'
N1
DT
DT
DT
11
11
11
N
7
2.30
0.30
108.30
110.60
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
7
5.56
0.30
108.30
113.86
C
C
C
O4'
C1'
N1
DC
DC
DC
15
15
15
N
7
1.97
0.30
108.30
110.27
C
C
C
O4'
C1'
N1
DT
DT
DT
17
17
17
N
8
2.00
0.30
108.30
110.30
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
8
5.23
0.30
108.30
113.53
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
8
4.72
0.30
108.30
113.02
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
8
3.29
0.30
108.30
111.59
B
B
B
O4'
C1'
N1
DC
DC
DC
9
9
9
N
8
2.06
0.30
108.30
110.36
B
B
B
O4'
C1'
N1
DT
DT
DT
11
11
11
N
8
2.33
0.30
108.30
110.63
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
8
2.91
0.30
108.30
111.21
C
C
C
O4'
C1'
N1
DC
DC
DC
15
15
15
N
8
2.18
0.30
108.30
110.48
C
C
C
O4'
C1'
N1
DT
DT
DT
17
17
17
N
8
2.28
0.30
108.30
110.58
C
C
C
O4'
C1'
N1
DT
DT
DT
18
18
18
N
9
3.06
0.30
108.30
111.36
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
9
4.36
0.30
108.30
112.66
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
9
4.40
0.30
108.30
112.70
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
9
2.51
0.30
108.30
110.81
B
B
B
O4'
C1'
N1
DT
DT
DT
8
8
8
N
9
2.47
0.30
108.30
110.77
B
B
B
O4'
C1'
N1
DC
DC
DC
9
9
9
N
9
2.39
0.30
108.30
110.69
B
B
B
O4'
C1'
N1
DT
DT
DT
11
11
11
N
9
2.30
0.30
108.30
110.60
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
9
1.91
0.30
108.30
110.21
C
C
C
O4'
C1'
N1
DT
DT
DT
13
13
13
N
9
4.23
0.30
108.30
112.53
C
C
C
O4'
C1'
N1
DC
DC
DC
15
15
15
N
9
2.22
0.30
108.30
110.52
C
C
C
O4'
C1'
N1
DC
DC
DC
16
16
16
N
9
2.15
0.30
108.30
110.45
C
C
C
O4'
C1'
N1
DT
DT
DT
18
18
18
N
10
-4.33
0.70
108.00
103.67
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
10
3.60
0.30
108.30
111.90
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
10
4.60
0.30
108.30
112.90
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
10
3.98
0.30
108.30
112.28
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
10
2.32
0.30
108.30
110.62
B
B
B
O4'
C1'
N1
DT
DT
DT
8
8
8
N
10
2.19
0.30
108.30
110.49
B
B
B
O4'
C1'
N1
DC
DC
DC
9
9
9
N
10
2.23
0.30
108.30
110.53
B
B
B
O4'
C1'
N1
DT
DT
DT
11
11
11
N
10
2.18
0.30
108.30
110.48
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
10
5.71
0.30
108.30
114.01
C
C
C
O4'
C1'
N1
DC
DC
DC
15
15
15
N
10
2.06
0.30
108.30
110.36
C
C
C
O4'
C1'
N1
DT
DT
DT
18
18
18
N
INTRAMOLECULAR TRIPLEX, NMR, 10 STRUCTURES
1
N
N
2
N
N
2
N
N
hydrog
WATSON-CRICK
A
DA
1
A
N1
DA
1
1_555
B
DT
12
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
A
DA
1
A
N6
DA
1
1_555
B
DT
12
B
O4
DT
6
1_555
hydrog
HOOGSTEEN
A
DA
1
A
N6
DA
1
1_555
C
DT
13
C
O4
DT
1
1_555
hydrog
HOOGSTEEN
A
DA
1
A
N7
DA
1
1_555
C
DT
13
C
N3
DT
1
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N1
DA
2
1_555
B
DT
11
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N6
DA
2
1_555
B
DT
11
B
O4
DT
5
1_555
hydrog
HOOGSTEEN
A
DA
2
A
N6
DA
2
1_555
C
DT
14
C
O4
DT
2
1_555
hydrog
HOOGSTEEN
A
DA
2
A
N7
DA
2
1_555
C
DT
14
C
N3
DT
2
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
B
DC
10
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
B
DC
10
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
B
DC
10
B
N4
DC
4
1_555
hydrog
DG-DC PAIR
A
DG
3
A
O6
DG
3
1_555
C
DC
15
C
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
9
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
9
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
9
B
N4
DC
3
1_555
hydrog
DG-DC PAIR
A
DG
4
A
O6
DG
4
1_555
C
DC
16
C
N4
DC
4
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
8
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
8
B
O4
DT
2
1_555
hydrog
HOOGSTEEN
A
DA
5
A
N6
DA
5
1_555
C
DT
17
C
O4
DT
5
1_555
hydrog
HOOGSTEEN
A
DA
5
A
N7
DA
5
1_555
C
DT
17
C
N3
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
7
B
N3
DT
1
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
7
B
O4
DT
1
1_555
hydrog
HOOGSTEEN
A
DA
6
A
N6
DA
6
1_555
C
DT
18
C
O4
DT
6
1_555
hydrog
HOOGSTEEN
A
DA
6
A
N7
DA
6
1_555
C
DT
18
C
N3
DT
6
1_555
DNA
DEOXYRIBONUCLEIC ACID, DNA TRIPLEX, DNA
1BCE
PDB
1
1BCE
1BCE
PDB
2
1BCE
1
6
1BCE
1
6
1BCE
A
1
1
6
7
12
1BCE
7
12
1BCE
B
2
1
6
13
18
1BCE
13
18
1BCE
C
2
1
6
1
P 1