1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Asensio, J.L. Brown, T. Lane, A.N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking UK Nucleic Acids Res. NARHAD 0389 0305-1048 26 3677 3686 10.1093/nar/26.16.3677 9685482 Comparison of the solution structures of intramolecular DNA triple helices containing adjacent and non-adjacent CG.C+ triplets. 1998 UK J.Mol.Biol. JMOBAK 0070 0022-2836 275 811 The Contribution of Cytosine Protonation to the Stability of Parallel DNA Triple Helices 1998 10.2210/pdb1bce/pdb pdb_00001bce 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 NON-NUCLEOTIDE LINKERS BETWEEN RESIDUES 6 AND 7 AND BETWEEN 12 AND 13 1866.281 DNA (5'-D(*AP*AP*GP*GP*AP*A)-3') 1 syn polymer NON-NUCLEOTIDE LINKERS BETWEEN RESIDUES 6 AND 7 AND BETWEEN 12 AND 13 1750.177 DNA (5'-D(*TP*TP*CP*CP*TP*T)-3') 2 syn polymer no no (DA)(DA)(DG)(DG)(DA)(DA) AAGGAA A polydeoxyribonucleotide no no (DT)(DT)(DC)(DC)(DT)(DT) TTCCTT B,C polydeoxyribonucleotide n n n n n n n n n n n n -13.415 1 20 A 1 B 12 7.084 A_DA1:DT12_B 1 -9.701 -0.645 -0.252 -0.206 -0.975 1 20 A 2 B 11 3.933 A_DA2:DT11_B 2 -12.930 -0.474 0.360 -0.226 2.649 1 19 A 3 B 10 -1.966 A_DG3:DC10_B 3 -12.213 -0.688 0.418 -0.194 5.449 1 19 A 4 B 9 -2.611 A_DG4:DC9_B 4 -11.012 0.460 0.303 -0.015 -6.292 1 20 A 5 B 8 -4.520 A_DA5:DT8_B 5 -21.051 -0.141 -0.051 -0.056 -2.692 1 20 A 6 B 7 -0.491 A_DA6:DT7_B 6 -18.296 -0.417 0.860 -0.323 2.613 33.040 A A 1 2 8.766 B B 12 11 2.805 4.947 0.219 -0.635 AA_DA1DA2:DT11DT12_BB 1 -5.346 9.473 32.250 -1.819 -1.144 3.057 31.737 A A 2 3 -2.401 B B 11 10 3.004 -1.313 0.049 -1.360 AA_DA2DG3:DC10DT11_BB 2 0.205 -0.375 31.710 -2.263 -0.055 2.993 35.929 A A 3 4 3.357 B B 10 9 3.042 2.070 0.281 -0.895 AA_DG3DG4:DC9DC10_BB 3 0.787 -1.277 35.863 -1.723 -0.353 2.812 32.875 A A 4 5 13.744 B B 9 8 3.229 7.691 0.267 -1.492 AA_DG4DA5:DT8DC9_BB 4 4.008 -7.162 31.741 -3.873 0.173 2.523 32.396 A A 5 6 8.514 B B 8 7 2.871 4.711 0.638 -1.191 AA_DA5DA6:DT7DT8_BB 5 -5.626 10.168 31.576 -2.828 -1.972 database_2 pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other 1 0 1998-08-12 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_nmr_software.name ENSEMBLE OF 10 STRUCTURES ENSEMBLE OF 10 STRUCTURES Y BNL 1998-04-29 REL REL CHEMICAL SYNTHESIS sample CHEMICAL SYNTHESIS sample THE STRUCTURES WERE BASED ON ANALYSIS OF SCALAR COUPLING CONSTANTS AND DISTANCES DERIVED FROM TIME-DEPENDENT NOES USING RESTRAINED MOLECULAR DYNAMICS. ENERGY, NMR R FACTORS 50 10 NOESY DQF-COSY 0.1M 5 1 ATMOSPHERE 303 K RESTRAINED MD/SIMULATED ANNEALING PROTOCOL RESTRAINED MOLECULAR DYNAMICS H2O MSI refinement Discover structure solution Discover 500 Varian UNITY 600 Varian UNITYPLUS A 1 n 1 DA 1 A A 2 n 2 DA 2 A G 3 n 3 DG 3 A G 4 n 4 DG 4 A A 5 n 5 DA 5 A A 6 n 6 DA 6 A T 7 n 1 DT 7 B T 8 n 2 DT 8 B C 9 n 3 DC 9 B C 10 n 4 DC 10 B T 11 n 5 DT 11 B T 12 n 6 DT 12 B T 13 n 1 DT 13 C T 14 n 2 DT 14 C C 15 n 3 DC 15 C C 16 n 4 DC 16 C T 17 n 5 DT 17 C T 18 n 6 DT 18 C author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 3.85 0.30 108.30 112.15 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 4.66 0.30 108.30 112.96 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 4.55 0.30 108.30 112.85 A A A O4' C1' N9 DA DA DA 6 6 6 N 1 2.38 0.30 108.30 110.68 B B B O4' C1' N1 DT DT DT 8 8 8 N 1 2.22 0.30 108.30 110.52 B B B O4' C1' N1 DC DC DC 10 10 10 N 1 2.12 0.30 108.30 110.42 B B B O4' C1' N1 DT DT DT 12 12 12 N 1 3.77 0.30 108.30 112.07 C C C O4' C1' N1 DC DC DC 15 15 15 N 2 4.49 0.30 108.30 112.79 A A A O4' C1' N9 DG DG DG 4 4 4 N 2 2.44 0.30 108.30 110.74 A A A O4' C1' N9 DA DA DA 5 5 5 N 2 4.95 0.30 108.30 113.25 A A A O4' C1' N9 DA DA DA 6 6 6 N 2 2.74 0.30 108.30 111.04 B B B O4' C1' N1 DT DT DT 8 8 8 N 2 2.24 0.30 108.30 110.54 B B B O4' C1' N1 DC DC DC 9 9 9 N 2 2.31 0.30 108.30 110.61 B B B O4' C1' N1 DT DT DT 11 11 11 N 2 2.45 0.30 108.30 110.75 B B B O4' C1' N1 DT DT DT 12 12 12 N 2 5.55 0.30 108.30 113.85 C C C O4' C1' N1 DC DC DC 15 15 15 N 3 6.32 0.30 108.30 114.62 A A A O4' C1' N9 DG DG DG 4 4 4 N 3 4.72 0.30 108.30 113.02 A A A O4' C1' N9 DA DA DA 6 6 6 N 3 2.10 0.30 108.30 110.40 B B B O4' C1' N1 DT DT DT 7 7 7 N 3 2.16 0.30 108.30 110.46 B B B O4' C1' N1 DT DT DT 8 8 8 N 3 2.51 0.30 108.30 110.81 B B B O4' C1' N1 DC DC DC 9 9 9 N 3 1.83 0.30 108.30 110.13 B B B O4' C1' N1 DC DC DC 10 10 10 N 3 2.06 0.30 108.30 110.36 B B B O4' C1' N1 DT DT DT 12 12 12 N 3 4.47 0.30 108.30 112.77 C C C O4' C1' N1 DC DC DC 15 15 15 N 3 1.91 0.30 108.30 110.21 C C C O4' C1' N1 DT DT DT 17 17 17 N 4 4.35 0.30 108.30 112.65 A A A O4' C1' N9 DG DG DG 4 4 4 N 4 1.91 0.30 108.30 110.21 A A A O4' C1' N9 DA DA DA 5 5 5 N 4 5.14 0.30 108.30 113.44 A A A O4' C1' N9 DA DA DA 6 6 6 N 4 2.42 0.30 108.30 110.72 B B B O4' C1' N1 DC DC DC 9 9 9 N 4 1.87 0.30 108.30 110.17 B B B O4' C1' N1 DC DC DC 10 10 10 N 4 2.13 0.30 108.30 110.43 B B B O4' C1' N1 DT DT DT 12 12 12 N 4 2.32 0.30 108.30 110.62 C C C O4' C1' N1 DT DT DT 13 13 13 N 4 2.43 0.30 108.30 110.73 C C C O4' C1' N1 DT DT DT 14 14 14 N 4 2.96 0.30 108.30 111.26 C C C O4' C1' N1 DC DC DC 15 15 15 N 4 2.09 0.30 108.30 110.39 C C C O4' C1' N1 DC DC DC 16 16 16 N 4 2.88 0.30 108.30 111.18 C C C O4' C1' N1 DT DT DT 18 18 18 N 5 4.81 0.30 108.30 113.11 A A A O4' C1' N9 DG DG DG 4 4 4 N 5 4.32 0.30 108.30 112.62 A A A O4' C1' N9 DA DA DA 5 5 5 N 5 4.90 0.30 108.30 113.20 A A A O4' C1' N9 DA DA DA 6 6 6 N 5 2.36 0.30 108.30 110.66 B B B O4' C1' N1 DC DC DC 9 9 9 N 5 2.12 0.30 108.30 110.42 B B B O4' C1' N1 DT DT DT 11 11 11 N 5 2.31 0.30 108.30 110.61 B B B O4' C1' N1 DT DT DT 12 12 12 N 5 4.36 0.30 108.30 112.66 C C C O4' C1' N1 DC DC DC 15 15 15 N 5 2.12 0.30 108.30 110.42 C C C O4' C1' N1 DT DT DT 17 17 17 N 5 2.45 0.30 108.30 110.75 C C C O4' C1' N1 DT DT DT 18 18 18 N 6 3.18 0.30 108.30 111.48 A A A O4' C1' N9 DG DG DG 4 4 4 N 6 2.79 0.30 108.30 111.09 A A A O4' C1' N9 DA DA DA 5 5 5 N 6 4.78 0.30 108.30 113.08 A A A O4' C1' N9 DA DA DA 6 6 6 N 6 -3.78 0.60 122.90 119.12 B B B C6 C5 C7 DT DT DT 8 8 8 N 6 1.80 0.30 108.30 110.10 B B B O4' C1' N1 DC DC DC 9 9 9 N 6 2.29 0.30 108.30 110.59 B B B O4' C1' N1 DT DT DT 11 11 11 N 6 2.26 0.30 108.30 110.56 B B B O4' C1' N1 DT DT DT 12 12 12 N 6 2.96 0.30 108.30 111.26 C C C O4' C1' N1 DC DC DC 15 15 15 N 6 1.88 0.30 108.30 110.18 C C C O4' C1' N1 DC DC DC 16 16 16 N 6 1.87 0.30 108.30 110.17 C C C O4' C1' N1 DT DT DT 17 17 17 N 6 2.45 0.30 108.30 110.75 C C C O4' C1' N1 DT DT DT 18 18 18 N 7 3.99 0.30 108.30 112.29 A A A O4' C1' N9 DG DG DG 4 4 4 N 7 2.95 0.30 108.30 111.25 A A A O4' C1' N9 DA DA DA 5 5 5 N 7 4.83 0.30 108.30 113.13 A A A O4' C1' N9 DA DA DA 6 6 6 N 7 2.35 0.30 108.30 110.65 B B B O4' C1' N1 DT DT DT 7 7 7 N 7 2.53 0.30 108.30 110.83 B B B O4' C1' N1 DT DT DT 8 8 8 N 7 3.16 0.30 108.30 111.46 B B B O4' C1' N1 DC DC DC 9 9 9 N 7 2.22 0.30 108.30 110.52 B B B O4' C1' N1 DT DT DT 11 11 11 N 7 2.30 0.30 108.30 110.60 B B B O4' C1' N1 DT DT DT 12 12 12 N 7 5.56 0.30 108.30 113.86 C C C O4' C1' N1 DC DC DC 15 15 15 N 7 1.97 0.30 108.30 110.27 C C C O4' C1' N1 DT DT DT 17 17 17 N 8 2.00 0.30 108.30 110.30 A A A O4' C1' N9 DG DG DG 4 4 4 N 8 5.23 0.30 108.30 113.53 A A A O4' C1' N9 DA DA DA 5 5 5 N 8 4.72 0.30 108.30 113.02 A A A O4' C1' N9 DA DA DA 6 6 6 N 8 3.29 0.30 108.30 111.59 B B B O4' C1' N1 DC DC DC 9 9 9 N 8 2.06 0.30 108.30 110.36 B B B O4' C1' N1 DT DT DT 11 11 11 N 8 2.33 0.30 108.30 110.63 B B B O4' C1' N1 DT DT DT 12 12 12 N 8 2.91 0.30 108.30 111.21 C C C O4' C1' N1 DC DC DC 15 15 15 N 8 2.18 0.30 108.30 110.48 C C C O4' C1' N1 DT DT DT 17 17 17 N 8 2.28 0.30 108.30 110.58 C C C O4' C1' N1 DT DT DT 18 18 18 N 9 3.06 0.30 108.30 111.36 A A A O4' C1' N9 DG DG DG 4 4 4 N 9 4.36 0.30 108.30 112.66 A A A O4' C1' N9 DA DA DA 5 5 5 N 9 4.40 0.30 108.30 112.70 A A A O4' C1' N9 DA DA DA 6 6 6 N 9 2.51 0.30 108.30 110.81 B B B O4' C1' N1 DT DT DT 8 8 8 N 9 2.47 0.30 108.30 110.77 B B B O4' C1' N1 DC DC DC 9 9 9 N 9 2.39 0.30 108.30 110.69 B B B O4' C1' N1 DT DT DT 11 11 11 N 9 2.30 0.30 108.30 110.60 B B B O4' C1' N1 DT DT DT 12 12 12 N 9 1.91 0.30 108.30 110.21 C C C O4' C1' N1 DT DT DT 13 13 13 N 9 4.23 0.30 108.30 112.53 C C C O4' C1' N1 DC DC DC 15 15 15 N 9 2.22 0.30 108.30 110.52 C C C O4' C1' N1 DC DC DC 16 16 16 N 9 2.15 0.30 108.30 110.45 C C C O4' C1' N1 DT DT DT 18 18 18 N 10 -4.33 0.70 108.00 103.67 A A A O4' C1' N9 DA DA DA 2 2 2 N 10 3.60 0.30 108.30 111.90 A A A O4' C1' N9 DG DG DG 4 4 4 N 10 4.60 0.30 108.30 112.90 A A A O4' C1' N9 DA DA DA 5 5 5 N 10 3.98 0.30 108.30 112.28 A A A O4' C1' N9 DA DA DA 6 6 6 N 10 2.32 0.30 108.30 110.62 B B B O4' C1' N1 DT DT DT 8 8 8 N 10 2.19 0.30 108.30 110.49 B B B O4' C1' N1 DC DC DC 9 9 9 N 10 2.23 0.30 108.30 110.53 B B B O4' C1' N1 DT DT DT 11 11 11 N 10 2.18 0.30 108.30 110.48 B B B O4' C1' N1 DT DT DT 12 12 12 N 10 5.71 0.30 108.30 114.01 C C C O4' C1' N1 DC DC DC 15 15 15 N 10 2.06 0.30 108.30 110.36 C C C O4' C1' N1 DT DT DT 18 18 18 N INTRAMOLECULAR TRIPLEX, NMR, 10 STRUCTURES 1 N N 2 N N 2 N N hydrog WATSON-CRICK A DA 1 A N1 DA 1 1_555 B DT 12 B N3 DT 6 1_555 hydrog WATSON-CRICK A DA 1 A N6 DA 1 1_555 B DT 12 B O4 DT 6 1_555 hydrog HOOGSTEEN A DA 1 A N6 DA 1 1_555 C DT 13 C O4 DT 1 1_555 hydrog HOOGSTEEN A DA 1 A N7 DA 1 1_555 C DT 13 C N3 DT 1 1_555 hydrog WATSON-CRICK A DA 2 A N1 DA 2 1_555 B DT 11 B N3 DT 5 1_555 hydrog WATSON-CRICK A DA 2 A N6 DA 2 1_555 B DT 11 B O4 DT 5 1_555 hydrog HOOGSTEEN A DA 2 A N6 DA 2 1_555 C DT 14 C O4 DT 2 1_555 hydrog HOOGSTEEN A DA 2 A N7 DA 2 1_555 C DT 14 C N3 DT 2 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 10 B N3 DC 4 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 10 B O2 DC 4 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 10 B N4 DC 4 1_555 hydrog DG-DC PAIR A DG 3 A O6 DG 3 1_555 C DC 15 C N4 DC 3 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 9 B N3 DC 3 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 9 B O2 DC 3 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 9 B N4 DC 3 1_555 hydrog DG-DC PAIR A DG 4 A O6 DG 4 1_555 C DC 16 C N4 DC 4 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 8 B N3 DT 2 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 8 B O4 DT 2 1_555 hydrog HOOGSTEEN A DA 5 A N6 DA 5 1_555 C DT 17 C O4 DT 5 1_555 hydrog HOOGSTEEN A DA 5 A N7 DA 5 1_555 C DT 17 C N3 DT 5 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 7 B N3 DT 1 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 7 B O4 DT 1 1_555 hydrog HOOGSTEEN A DA 6 A N6 DA 6 1_555 C DT 18 C O4 DT 6 1_555 hydrog HOOGSTEEN A DA 6 A N7 DA 6 1_555 C DT 18 C N3 DT 6 1_555 DNA DEOXYRIBONUCLEIC ACID, DNA TRIPLEX, DNA 1BCE PDB 1 1BCE 1BCE PDB 2 1BCE 1 6 1BCE 1 6 1BCE A 1 1 6 7 12 1BCE 7 12 1BCE B 2 1 6 13 18 1BCE 13 18 1BCE C 2 1 6 1 P 1