0.014055 0.000000 0.002633 0.000000 0.013841 0.000000 0.000000 0.000000 0.014000 0.00000 0.00000 0.00000 Conti, E. Rivetti, C. Wonacott, A. Brick, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 100.61 90.00 71.150 72.250 72.670 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C13 H11 N3 209.247 PROFLAVIN non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H11 N O6 S 261.252 n O-SULFO-L-TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking NE FEBS Lett. FEBLAL 0165 0014-5793 425 229 233 10.1016/S0014-5793(98)00235-X 9559654 X-ray and spectrophotometric studies of the binding of proflavin to the S1 specificity pocket of human alpha-thrombin. 1998 UK J.Mol.Biol. JMOBAK 0070 0022-2836 221 1379 Structure of the Hirugen and Hirulog 1 Complexes of Alpha-Thrombin 1991 10.2210/pdb1bcu/pdb pdb_00001bcu 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293 1 PINHOLE DIFFRACTOMETER 1994-05 ENRAF-NONIUS FAST GRAPHITE(002) M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE ENRAF-NONIUS FR571 4096.534 ALPHA-THROMBIN 3.4.21.5 1 nat polymer 29780.219 ALPHA-THROMBIN 3.4.21.5 1 nat polymer 1548.580 HIRUGEN RESIDUES 54-65 OF HIRUDIN 1 man polymer 209.247 PROFLAVIN 1 syn non-polymer 18.015 water 232 nat water no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L polypeptide(L) no no IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE H polypeptide(L) no yes GDFEEIPEE(TYS)LQ GDFEEIPEEYLQ I polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n medicinal leech Hirudo sample 6421 Hirudo medicinalis human Homo sample 9606 Homo sapiens PLASMA human Homo sample 9606 Homo sapiens PLASMA 1 2.59 52.51 7 pH 7 diffrn_detector pdbx_database_status database_2 pdbx_initial_refinement_model struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Data collection Other Database references Derived calculations Refinement description 1 0 1998-10-14 1 1 2008-03-03 1 2 2011-07-13 1 3 2018-04-18 1 4 2023-08-02 _diffrn_detector.detector _pdbx_database_status.process_site _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1998-05-02 REL REL PRL PROFLAVIN HOH water THROMBIN IS CLEAVED BETWEEN RESIDUES 15 AND 16. CHAIN INDICATOR *L* IS USED FOR RESIDUES 1H - 15 AND CHAIN INDICATOR *H* IS USED FOR RESIDUES 16 - 247. CHAIN INDICATOR *I* IS USED FOR HIRUGEN. THE HIRUGEN RESIDUE NUMBERING CORRESPONDS TO THE C-TERMINAL RESIDUES OF HIRUDIN. CHYMOTRYPSIN NUMBERING (RATHER THAN SEQUENTIAL) SYSTEM IS USED, BASED ON THE TOPOLOGICAL ALIGNMENT WITH THE STRUCTURE OF CHYMOTRYPSIN (W.BODE ET AL., 1989, EMBO J. 8, 3467-3475) 1HGT PDB experimental model PRL 280 4 PRL PRL 280 H HOH 300 5 HOH HOH 300 L HOH 309 5 HOH HOH 309 L HOH 310 5 HOH HOH 310 L HOH 311 5 HOH HOH 311 L HOH 314 5 HOH HOH 314 L HOH 322 5 HOH HOH 322 L HOH 331 5 HOH HOH 331 L HOH 340 5 HOH HOH 340 L HOH 372 5 HOH HOH 372 L HOH 373 5 HOH HOH 373 L HOH 377 5 HOH HOH 377 L HOH 380 5 HOH HOH 380 L HOH 382 5 HOH HOH 382 L HOH 406 5 HOH HOH 406 L HOH 408 5 HOH HOH 408 L HOH 409 5 HOH HOH 409 L HOH 415 5 HOH HOH 415 L HOH 416 5 HOH HOH 416 L HOH 417 5 HOH HOH 417 L HOH 418 5 HOH HOH 418 L HOH 419 5 HOH HOH 419 L HOH 420 5 HOH HOH 420 L HOH 421 5 HOH HOH 421 L HOH 422 5 HOH HOH 422 L HOH 490 5 HOH HOH 490 L HOH 497 5 HOH HOH 497 L HOH 532 5 HOH HOH 532 L HOH 538 5 HOH HOH 538 L HOH 603 5 HOH HOH 603 L HOH 613 5 HOH HOH 613 L HOH 618 5 HOH HOH 618 L HOH 621 5 HOH HOH 621 L HOH 622 5 HOH HOH 622 L HOH 301 5 HOH HOH 301 H HOH 304 5 HOH HOH 304 H HOH 305 5 HOH HOH 305 H HOH 306 5 HOH HOH 306 H HOH 308 5 HOH HOH 308 H HOH 312 5 HOH HOH 312 H HOH 313 5 HOH HOH 313 H HOH 315 5 HOH HOH 315 H HOH 316 5 HOH HOH 316 H HOH 317 5 HOH HOH 317 H HOH 318 5 HOH HOH 318 H HOH 319 5 HOH HOH 319 H HOH 320 5 HOH HOH 320 H HOH 321 5 HOH HOH 321 H HOH 323 5 HOH HOH 323 H HOH 324 5 HOH HOH 324 H HOH 325 5 HOH HOH 325 H HOH 326 5 HOH HOH 326 H HOH 327 5 HOH HOH 327 H HOH 328 5 HOH HOH 328 H HOH 329 5 HOH HOH 329 H HOH 330 5 HOH HOH 330 H HOH 332 5 HOH HOH 332 H HOH 333 5 HOH HOH 333 H HOH 334 5 HOH HOH 334 H HOH 335 5 HOH HOH 335 H HOH 336 5 HOH HOH 336 H HOH 338 5 HOH HOH 338 H HOH 339 5 HOH HOH 339 H HOH 341 5 HOH HOH 341 H HOH 342 5 HOH HOH 342 H HOH 343 5 HOH HOH 343 H HOH 344 5 HOH HOH 344 H HOH 345 5 HOH HOH 345 H HOH 346 5 HOH HOH 346 H HOH 348 5 HOH HOH 348 H HOH 349 5 HOH HOH 349 H HOH 350 5 HOH HOH 350 H HOH 352 5 HOH HOH 352 H HOH 353 5 HOH HOH 353 H HOH 354 5 HOH HOH 354 H HOH 355 5 HOH HOH 355 H HOH 356 5 HOH HOH 356 H HOH 357 5 HOH HOH 357 H HOH 358 5 HOH HOH 358 H HOH 359 5 HOH HOH 359 H HOH 360 5 HOH HOH 360 H HOH 361 5 HOH HOH 361 H HOH 362 5 HOH HOH 362 H HOH 365 5 HOH HOH 365 H HOH 366 5 HOH HOH 366 H HOH 367 5 HOH HOH 367 H HOH 368 5 HOH HOH 368 H HOH 369 5 HOH HOH 369 H HOH 370 5 HOH HOH 370 H HOH 371 5 HOH HOH 371 H HOH 375 5 HOH HOH 375 H HOH 376 5 HOH HOH 376 H HOH 378 5 HOH HOH 378 H HOH 379 5 HOH HOH 379 H HOH 383 5 HOH HOH 383 H HOH 384 5 HOH HOH 384 H HOH 386 5 HOH HOH 386 H HOH 387 5 HOH HOH 387 H HOH 388 5 HOH HOH 388 H HOH 389 5 HOH HOH 389 H HOH 390 5 HOH HOH 390 H HOH 391 5 HOH HOH 391 H HOH 392 5 HOH HOH 392 H HOH 393 5 HOH HOH 393 H HOH 394 5 HOH HOH 394 H HOH 395 5 HOH HOH 395 H HOH 396 5 HOH HOH 396 H HOH 398 5 HOH HOH 398 H HOH 399 5 HOH HOH 399 H HOH 400 5 HOH HOH 400 H HOH 402 5 HOH HOH 402 H HOH 403 5 HOH HOH 403 H HOH 404 5 HOH HOH 404 H HOH 405 5 HOH HOH 405 H HOH 407 5 HOH HOH 407 H HOH 410 5 HOH HOH 410 H HOH 412 5 HOH HOH 412 H HOH 413 5 HOH HOH 413 H HOH 414 5 HOH HOH 414 H HOH 423 5 HOH HOH 423 H HOH 424 5 HOH HOH 424 H HOH 425 5 HOH HOH 425 H HOH 426 5 HOH HOH 426 H HOH 427 5 HOH HOH 427 H HOH 428 5 HOH HOH 428 H HOH 429 5 HOH HOH 429 H HOH 430 5 HOH HOH 430 H HOH 432 5 HOH HOH 432 H HOH 434 5 HOH HOH 434 H HOH 435 5 HOH HOH 435 H HOH 436 5 HOH HOH 436 H HOH 437 5 HOH HOH 437 H HOH 438 5 HOH HOH 438 H HOH 439 5 HOH HOH 439 H HOH 440 5 HOH HOH 440 H HOH 441 5 HOH HOH 441 H HOH 447 5 HOH HOH 447 H HOH 449 5 HOH HOH 449 H HOH 450 5 HOH HOH 450 H HOH 451 5 HOH HOH 451 H HOH 452 5 HOH HOH 452 H HOH 453 5 HOH HOH 453 H HOH 454 5 HOH HOH 454 H HOH 455 5 HOH HOH 455 H HOH 456 5 HOH HOH 456 H HOH 458 5 HOH HOH 458 H HOH 459 5 HOH HOH 459 H HOH 460 5 HOH HOH 460 H HOH 461 5 HOH HOH 461 H HOH 462 5 HOH HOH 462 H HOH 464 5 HOH HOH 464 H HOH 465 5 HOH HOH 465 H HOH 466 5 HOH HOH 466 H HOH 467 5 HOH HOH 467 H HOH 469 5 HOH HOH 469 H HOH 470 5 HOH HOH 470 H HOH 471 5 HOH HOH 471 H HOH 472 5 HOH HOH 472 H HOH 473 5 HOH HOH 473 H HOH 474 5 HOH HOH 474 H HOH 475 5 HOH HOH 475 H HOH 476 5 HOH HOH 476 H HOH 477 5 HOH HOH 477 H HOH 478 5 HOH HOH 478 H HOH 479 5 HOH HOH 479 H HOH 480 5 HOH HOH 480 H HOH 482 5 HOH HOH 482 H HOH 485 5 HOH HOH 485 H HOH 486 5 HOH HOH 486 H HOH 487 5 HOH HOH 487 H HOH 491 5 HOH HOH 491 H HOH 493 5 HOH HOH 493 H HOH 494 5 HOH HOH 494 H HOH 495 5 HOH HOH 495 H HOH 498 5 HOH HOH 498 H HOH 499 5 HOH HOH 499 H HOH 502 5 HOH HOH 502 H HOH 503 5 HOH HOH 503 H HOH 504 5 HOH HOH 504 H HOH 505 5 HOH HOH 505 H HOH 506 5 HOH HOH 506 H HOH 507 5 HOH HOH 507 H HOH 511 5 HOH HOH 511 H HOH 512 5 HOH HOH 512 H HOH 513 5 HOH HOH 513 H HOH 515 5 HOH HOH 515 H HOH 516 5 HOH HOH 516 H HOH 519 5 HOH HOH 519 H HOH 520 5 HOH HOH 520 H HOH 521 5 HOH HOH 521 H HOH 522 5 HOH HOH 522 H HOH 523 5 HOH HOH 523 H HOH 524 5 HOH HOH 524 H HOH 525 5 HOH HOH 525 H HOH 526 5 HOH HOH 526 H HOH 528 5 HOH HOH 528 H HOH 529 5 HOH HOH 529 H HOH 530 5 HOH HOH 530 H HOH 531 5 HOH HOH 531 H HOH 533 5 HOH HOH 533 H HOH 534 5 HOH HOH 534 H HOH 535 5 HOH HOH 535 H HOH 536 5 HOH HOH 536 H HOH 540 5 HOH HOH 540 H HOH 541 5 HOH HOH 541 H HOH 542 5 HOH HOH 542 H HOH 543 5 HOH HOH 543 H HOH 544 5 HOH HOH 544 H HOH 545 5 HOH HOH 545 H HOH 547 5 HOH HOH 547 H HOH 548 5 HOH HOH 548 H HOH 549 5 HOH HOH 549 H HOH 601 5 HOH HOH 601 H HOH 602 5 HOH HOH 602 H HOH 604 5 HOH HOH 604 H HOH 606 5 HOH HOH 606 H HOH 608 5 HOH HOH 608 H HOH 609 5 HOH HOH 609 H HOH 610 5 HOH HOH 610 H HOH 614 5 HOH HOH 614 H HOH 615 5 HOH HOH 615 H HOH 617 5 HOH HOH 617 H HOH 619 5 HOH HOH 619 H HOH 620 5 HOH HOH 620 H HOH 623 5 HOH HOH 623 H HOH 442 5 HOH HOH 442 I HOH 443 5 HOH HOH 443 I HOH 444 5 HOH HOH 444 I HOH 446 5 HOH HOH 446 I HOH 514 5 HOH HOH 514 I HOH 550 5 HOH HOH 550 I HOH 607 5 HOH HOH 607 I HOH 612 5 HOH HOH 612 I n 1 -5 L n 2 -4 L n 3 -3 L n 4 -2 L n 5 -1 L n 6 0 L ALA 1 n 7 B ALA 1 L ASP 1 n 8 A ASP 1 L CYS 1 n 9 CYS 1 L GLY 2 n 10 GLY 2 L LEU 3 n 11 LEU 3 L ARG 4 n 12 ARG 4 L PRO 5 n 13 PRO 5 L LEU 6 n 14 LEU 6 L PHE 7 n 15 PHE 7 L GLU 8 n 16 GLU 8 L LYS 9 n 17 LYS 9 L LYS 10 n 18 LYS 10 L SER 11 n 19 SER 11 L LEU 12 n 20 LEU 12 L GLU 13 n 21 GLU 13 L ASP 14 n 22 ASP 14 L LYS 14 n 23 A LYS 14 L THR 14 n 24 B THR 14 L GLU 14 n 25 C GLU 14 L ARG 14 n 26 D ARG 14 L GLU 14 n 27 E GLU 14 L LEU 14 n 28 F LEU 14 L LEU 14 n 29 G LEU 14 L GLU 14 n 30 H GLU 14 L SER 14 n 31 I SER 14 L TYR 14 n 32 J TYR 14 L n 33 15 L n 34 16 L n 35 17 L n 36 18 L ILE 16 n 1 ILE 16 H VAL 17 n 2 VAL 17 H GLU 18 n 3 GLU 18 H GLY 19 n 4 GLY 19 H SER 20 n 5 SER 20 H ASP 21 n 6 ASP 21 H ALA 22 n 7 ALA 22 H GLU 23 n 8 GLU 23 H ILE 24 n 9 ILE 24 H GLY 25 n 10 GLY 25 H MET 26 n 11 MET 26 H SER 27 n 12 SER 27 H PRO 28 n 13 PRO 28 H TRP 29 n 14 TRP 29 H GLN 30 n 15 GLN 30 H VAL 31 n 16 VAL 31 H MET 32 n 17 MET 32 H LEU 33 n 18 LEU 33 H PHE 34 n 19 PHE 34 H ARG 35 n 20 ARG 35 H LYS 36 n 21 LYS 36 H SER 36 n 22 A SER 36 H PRO 37 n 23 PRO 37 H GLN 38 n 24 GLN 38 H GLU 39 n 25 GLU 39 H LEU 40 n 26 LEU 40 H LEU 41 n 27 LEU 41 H CYS 42 n 28 CYS 42 H GLY 43 n 29 GLY 43 H ALA 44 n 30 ALA 44 H SER 45 n 31 SER 45 H LEU 46 n 32 LEU 46 H ILE 47 n 33 ILE 47 H SER 48 n 34 SER 48 H ASP 49 n 35 ASP 49 H ARG 50 n 36 ARG 50 H TRP 51 n 37 TRP 51 H VAL 52 n 38 VAL 52 H LEU 53 n 39 LEU 53 H THR 54 n 40 THR 54 H ALA 55 n 41 ALA 55 H ALA 56 n 42 ALA 56 H HIS 57 n 43 HIS 57 H CYS 58 n 44 CYS 58 H LEU 59 n 45 LEU 59 H LEU 60 n 46 LEU 60 H TYR 60 n 47 A TYR 60 H PRO 60 n 48 B PRO 60 H PRO 60 n 49 C PRO 60 H TRP 60 n 50 D TRP 60 H ASP 60 n 51 E ASP 60 H LYS 60 n 52 F LYS 60 H ASN 60 n 53 G ASN 60 H PHE 60 n 54 H PHE 60 H THR 60 n 55 I THR 60 H GLU 61 n 56 GLU 61 H ASN 62 n 57 ASN 62 H ASP 63 n 58 ASP 63 H LEU 64 n 59 LEU 64 H LEU 65 n 60 LEU 65 H VAL 66 n 61 VAL 66 H ARG 67 n 62 ARG 67 H ILE 68 n 63 ILE 68 H GLY 69 n 64 GLY 69 H LYS 70 n 65 LYS 70 H HIS 71 n 66 HIS 71 H SER 72 n 67 SER 72 H ARG 73 n 68 ARG 73 H THR 74 n 69 THR 74 H ARG 75 n 70 ARG 75 H TYR 76 n 71 TYR 76 H GLU 77 n 72 GLU 77 H ARG 77 n 73 A ARG 77 H ASN 78 n 74 ASN 78 H ILE 79 n 75 ILE 79 H GLU 80 n 76 GLU 80 H LYS 81 n 77 LYS 81 H ILE 82 n 78 ILE 82 H SER 83 n 79 SER 83 H MET 84 n 80 MET 84 H LEU 85 n 81 LEU 85 H GLU 86 n 82 GLU 86 H LYS 87 n 83 LYS 87 H ILE 88 n 84 ILE 88 H TYR 89 n 85 TYR 89 H ILE 90 n 86 ILE 90 H HIS 91 n 87 HIS 91 H PRO 92 n 88 PRO 92 H ARG 93 n 89 ARG 93 H TYR 94 n 90 TYR 94 H ASN 95 n 91 ASN 95 H TRP 96 n 92 TRP 96 H ARG 97 n 93 ARG 97 H GLU 97 n 94 A GLU 97 H ASN 98 n 95 ASN 98 H LEU 99 n 96 LEU 99 H ASP 100 n 97 ASP 100 H ARG 101 n 98 ARG 101 H ASP 102 n 99 ASP 102 H ILE 103 n 100 ILE 103 H ALA 104 n 101 ALA 104 H LEU 105 n 102 LEU 105 H MET 106 n 103 MET 106 H LYS 107 n 104 LYS 107 H LEU 108 n 105 LEU 108 H LYS 109 n 106 LYS 109 H LYS 110 n 107 LYS 110 H PRO 111 n 108 PRO 111 H VAL 112 n 109 VAL 112 H ALA 113 n 110 ALA 113 H PHE 114 n 111 PHE 114 H SER 115 n 112 SER 115 H ASP 116 n 113 ASP 116 H TYR 117 n 114 TYR 117 H ILE 118 n 115 ILE 118 H HIS 119 n 116 HIS 119 H PRO 120 n 117 PRO 120 H VAL 121 n 118 VAL 121 H CYS 122 n 119 CYS 122 H LEU 123 n 120 LEU 123 H PRO 124 n 121 PRO 124 H ASP 125 n 122 ASP 125 H ARG 126 n 123 ARG 126 H GLU 127 n 124 GLU 127 H THR 128 n 125 THR 128 H ALA 129 n 126 ALA 129 H ALA 129 n 127 A ALA 129 H SER 129 n 128 B SER 129 H LEU 129 n 129 C LEU 129 H LEU 130 n 130 LEU 130 H GLN 131 n 131 GLN 131 H ALA 132 n 132 ALA 132 H GLY 133 n 133 GLY 133 H TYR 134 n 134 TYR 134 H LYS 135 n 135 LYS 135 H GLY 136 n 136 GLY 136 H ARG 137 n 137 ARG 137 H VAL 138 n 138 VAL 138 H THR 139 n 139 THR 139 H GLY 140 n 140 GLY 140 H TRP 141 n 141 TRP 141 H GLY 142 n 142 GLY 142 H ASN 143 n 143 ASN 143 H LEU 144 n 144 LEU 144 H LYS 145 n 145 LYS 145 H GLU 146 n 146 GLU 146 H n 147 A 146 H n 148 B 146 H n 149 C 146 H n 150 D 146 H n 151 E 146 H n 152 F 146 H n 153 G 146 H n 154 H 146 H GLY 150 n 155 GLY 150 H GLN 151 n 156 GLN 151 H PRO 152 n 157 PRO 152 H SER 153 n 158 SER 153 H VAL 154 n 159 VAL 154 H LEU 155 n 160 LEU 155 H GLN 156 n 161 GLN 156 H VAL 157 n 162 VAL 157 H VAL 158 n 163 VAL 158 H ASN 159 n 164 ASN 159 H LEU 160 n 165 LEU 160 H PRO 161 n 166 PRO 161 H ILE 162 n 167 ILE 162 H VAL 163 n 168 VAL 163 H GLU 164 n 169 GLU 164 H ARG 165 n 170 ARG 165 H PRO 166 n 171 PRO 166 H VAL 167 n 172 VAL 167 H CYS 168 n 173 CYS 168 H LYS 169 n 174 LYS 169 H ASP 170 n 175 ASP 170 H SER 171 n 176 SER 171 H THR 172 n 177 THR 172 H ARG 173 n 178 ARG 173 H ILE 174 n 179 ILE 174 H ARG 175 n 180 ARG 175 H ILE 176 n 181 ILE 176 H THR 177 n 182 THR 177 H ASP 178 n 183 ASP 178 H ASN 179 n 184 ASN 179 H MET 180 n 185 MET 180 H PHE 181 n 186 PHE 181 H CYS 182 n 187 CYS 182 H ALA 183 n 188 ALA 183 H GLY 184 n 189 GLY 184 H TYR 184 n 190 A TYR 184 H LYS 185 n 191 LYS 185 H PRO 186 n 192 PRO 186 H ASP 186 n 193 A ASP 186 H GLU 186 n 194 B GLU 186 H GLY 186 n 195 C GLY 186 H LYS 186 n 196 D LYS 186 H ARG 187 n 197 ARG 187 H GLY 188 n 198 GLY 188 H ASP 189 n 199 ASP 189 H ALA 190 n 200 ALA 190 H CYS 191 n 201 CYS 191 H GLU 192 n 202 GLU 192 H GLY 193 n 203 GLY 193 H ASP 194 n 204 ASP 194 H SER 195 n 205 SER 195 H GLY 196 n 206 GLY 196 H GLY 197 n 207 GLY 197 H PRO 198 n 208 PRO 198 H PHE 199 n 209 PHE 199 H VAL 200 n 210 VAL 200 H MET 201 n 211 MET 201 H LYS 202 n 212 LYS 202 H SER 203 n 213 SER 203 H PRO 204 n 214 PRO 204 H PHE 204 n 215 A PHE 204 H ASN 204 n 216 B ASN 204 H ASN 205 n 217 ASN 205 H ARG 206 n 218 ARG 206 H TRP 207 n 219 TRP 207 H TYR 208 n 220 TYR 208 H GLN 209 n 221 GLN 209 H MET 210 n 222 MET 210 H GLY 211 n 223 GLY 211 H ILE 212 n 224 ILE 212 H VAL 213 n 225 VAL 213 H SER 214 n 226 SER 214 H TRP 215 n 227 TRP 215 H GLY 216 n 228 GLY 216 H GLU 217 n 229 GLU 217 H GLY 219 n 230 GLY 219 H CYS 220 n 231 CYS 220 H ASP 221 n 232 ASP 221 H ARG 221 n 233 A ARG 221 H ASP 222 n 234 ASP 222 H GLY 223 n 235 GLY 223 H LYS 224 n 236 LYS 224 H TYR 225 n 237 TYR 225 H GLY 226 n 238 GLY 226 H PHE 227 n 239 PHE 227 H TYR 228 n 240 TYR 228 H THR 229 n 241 THR 229 H HIS 230 n 242 HIS 230 H VAL 231 n 243 VAL 231 H PHE 232 n 244 PHE 232 H ARG 233 n 245 ARG 233 H LEU 234 n 246 LEU 234 H LYS 235 n 247 LYS 235 H LYS 236 n 248 LYS 236 H TRP 237 n 249 TRP 237 H ILE 238 n 250 ILE 238 H GLN 239 n 251 GLN 239 H LYS 240 n 252 LYS 240 H VAL 241 n 253 VAL 241 H ILE 242 n 254 ILE 242 H ASP 243 n 255 ASP 243 H GLN 244 n 256 GLN 244 H PHE 245 n 257 PHE 245 H n 258 246 H n 259 247 H n 1 54 I ASP 55 n 2 ASP 55 I PHE 56 n 3 PHE 56 I GLU 57 n 4 GLU 57 I GLU 58 n 5 GLU 58 I ILE 59 n 6 ILE 59 I PRO 60 n 7 PRO 60 I GLU 61 n 8 GLU 61 I GLU 62 n 9 GLU 62 I TYS 63 n 10 TYS 63 I LEU 64 n 11 LEU 64 I n 12 65 I author_and_software_defined_assembly PISA 3 trimeric 3770 -8 12880 I TYS 63 O-SULFO-L-TYROSINE C TYS 10 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 H O LYS 81 B O LYS 77 H N ILE 68 B N ILE 63 H O LEU 65 B O LEU 60 H N PHE 34 B N PHE 19 H O VAL 31 B O VAL 16 H N ALA 44 B N ALA 30 H O VAL 52 B O VAL 38 H N MET 106 B N MET 103 H O LEU 105 B O LEU 102 H N TYR 89 B N TYR 85 H O GLY 136 B O GLY 136 H N LEU 160 B N LEU 165 H O PHE 181 B O PHE 186 H N TYR 228 B N TYR 240 H O PHE 227 B O PHE 239 H N TRP 215 B N TRP 227 H O TYR 208 B O TYR 220 H N MET 201 B N MET 211 1 H ARG 75 B ARG 70 1 L THR -5 A THR 1 1 Y 1 L PHE -4 A PHE 2 1 Y 1 L GLY -3 A GLY 3 1 Y 1 L SER -2 A SER 4 1 Y 1 L GLY -1 A GLY 5 1 Y 1 L GLU 0 A GLU 6 1 Y 1 L ILE 15 A ILE 33 1 Y 1 L ASP 16 A ASP 34 1 Y 1 L GLY 17 A GLY 35 1 Y 1 L ARG 18 A ARG 36 1 Y A 1 H THR 146 B THR 147 1 Y B 1 H TRP 146 B TRP 148 1 Y C 1 H THR 146 B THR 149 1 Y D 1 H ALA 146 B ALA 150 1 Y E 1 H ASN 146 B ASN 151 1 Y F 1 H VAL 146 B VAL 152 1 Y G 1 H GLY 146 B GLY 153 1 Y H 1 H LYS 146 B LYS 154 1 Y 1 H GLY 246 B GLY 258 1 Y 1 H GLU 247 B GLU 259 1 Y 1 I GLY 54 C GLY 1 1 Y 1 I GLN 65 C GLN 12 1 Y 1 14.83 1.80 110.60 125.43 H H H N CA CB ARG ARG ARG 75 75 75 B N 1 -21.38 2.20 113.40 92.02 H H H CA CB CG ARG ARG ARG 75 75 75 B B N 1 H H CA CB ARG ARG 75 75 1.800 0.022 1.535 3.335 B N 1 L PHE 7 -126.69 -84.00 A 1 H TYR 60 -155.44 81.95 G 1 H ASN 60 -152.95 76.73 1 H HIS 71 -136.31 -54.97 A 1 H GLU 97 -110.66 -71.48 PARHCSDX.PRO TOPHCSDX.PRO PARAM19.SOL TOPH19.SOL 29.3 THE SIDE CHAIN OF ARG H 75 HAS BEEN MODELED WITH TWO DIFFERENT CONFORMATIONS. 0.212 0.007 0.189 0.189 2.0 20.0 939 24042 4.0 98.1 RANDOM 1 RESTRAINED THROUGHOUT MOLECULAR REPLACEMENT 1HGT 20.0 2.0 20.0 232 2574 16 0 2326 0.009 1.84 23.9 1.22 1.77 1.5 2.82 2.0 3.22 2.0 5.03 2.5 0.31 0.028 0.29 2.09 123 2778 8 4.0 94.9 2.0 20.0 1BCU 56491 0.051 0.051 1 11.8 2.3 98.1 0.158 2.00 2.11 4.3 0.158 1 1.8 95.9 data collection MADNES data reduction CCP4 model building X-PLOR 3.1 refinement X-PLOR 3.1 data reduction MADNES data scaling CCP4 phasing X-PLOR 3.1 ALPHA-THROMBIN COMPLEXED WITH HIRUGEN AND PROFLAVIN 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N L GLU 8 A GLU 16 HELX_P L LYS 10 A LYS 18 5 1 3 L GLU 14 A GLU 25 HELX_P L LEU 14 A LEU 29 1 2 5 C G H ALA 56 B ALA 42 HELX_P H CYS 58 B CYS 44 5 3 3 H PRO 60 B PRO 48 HELX_P H TRP 60 B TRP 50 5 4 3 B D H GLU 61 B GLU 56 HELX_P H ASP 63 B ASP 58 5 5 3 H ARG 126 B ARG 123 HELX_P H LEU 129 B LEU 129 1 6 7 C H ARG 165 B ARG 170 HELX_P H SER 171 B SER 176 1 7 7 H PRO 186 B PRO 192 HELX_P H GLU 186 B GLU 194 5 8 3 B H PHE 232 B PHE 244 HELX_P H ASP 243 B ASP 255 5 9 12 disulf 2.032 L CYS 1 A SG CYS 9 1_555 H CYS 122 B SG CYS 119 1_555 disulf 2.032 H CYS 42 B SG CYS 28 1_555 H CYS 58 B SG CYS 44 1_555 disulf 2.026 H CYS 168 B SG CYS 173 1_555 H CYS 182 B SG CYS 187 1_555 disulf 2.040 H CYS 191 B SG CYS 201 1_555 H CYS 220 B SG CYS 231 1_555 covale 1.333 both I GLU 62 C C GLU 9 1_555 I TYS 63 C N TYS 10 1_555 covale 1.330 both I TYS 63 C C TYS 10 1_555 I LEU 64 C N LEU 11 1_555 HYDROLASE/HYDROLASE INHIBITOR COMPLEX (SERINE PROTEASE INHIBITOR), HYDROLASE, SERINE PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX H SER 36 B SER 22 A 1 H PRO 37 B PRO 23 -0.52 THRB_HUMAN UNP 1 328 P00734 THRB_HUMAN UNP 2 364 P00734 ITH1_HIRME UNP 3 54 P01050 328 363 1BCU -5 18 P00734 L 1 1 36 364 622 1BCU 16 247 P00734 H 2 1 259 54 65 1BCU 54 65 P01050 I 3 1 12 3 TYR conflict TYS 63 1BCU I P01050 UNP 63 10 4 3 2 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel H LYS 81 B LYS 77 H MET 84 B MET 80 H LEU 64 B LEU 59 H ILE 68 B ILE 63 H GLN 30 B GLN 15 H ARG 35 B ARG 20 H GLU 39 B GLU 25 H SER 45 B SER 31 H TRP 51 B TRP 37 H THR 54 B THR 40 H ALA 104 B ALA 101 H LEU 108 B LEU 105 H LEU 85 B LEU 81 H ILE 90 B ILE 86 H LYS 135 B LYS 135 H GLY 140 B GLY 140 H GLN 156 B GLN 161 H PRO 161 B PRO 166 H MET 180 B MET 185 H ALA 183 B ALA 188 H GLY 226 B GLY 238 H HIS 230 B HIS 242 H TRP 207 B TRP 219 H TRP 215 B TRP 227 H PRO 198 B PRO 208 H LYS 202 B LYS 212 Unknown 3 BINDING SITE FOR RESIDUE PRL H 280 H PRL 280 Software 8 BINDING SITE FOR CHAIN I OF HIRUGEN Software 19 H HIS 57 B HIS 43 3 1_555 H ASP 102 B ASP 99 3 1_555 H SER 195 B SER 205 3 1_555 H ASP 189 B ASP 199 8 1_555 H ALA 190 B ALA 200 8 1_555 H VAL 213 B VAL 225 8 1_555 H TRP 215 B TRP 227 8 1_555 H GLY 219 B GLY 230 8 1_555 H CYS 220 B CYS 231 8 1_555 H GLY 226 B GLY 238 8 1_555 H HOH 542 F HOH 8 1_555 H PHE 34 B PHE 19 19 1_555 H LEU 40 B LEU 26 19 1_555 H LEU 65 B LEU 60 19 1_555 H ARG 67 B ARG 62 19 1_555 H ARG 73 B ARG 68 19 1_555 H THR 74 B THR 69 19 1_555 H ARG 75 B ARG 70 19 2_657 H ARG 75 B ARG 70 19 1_555 H TYR 76 B TYR 71 19 1_555 H LYS 81 B LYS 77 19 1_555 H ILE 82 B ILE 78 19 1_555 H MET 84 B MET 80 19 1_555 H HOH 338 F HOH 19 1_555 I HOH 442 G HOH 19 1_555 I HOH 444 G HOH 19 1_555 I HOH 514 G HOH 19 1_555 I HOH 550 G HOH 19 1_555 I HOH 607 G HOH 19 1_555 I HOH 612 G HOH 19 1_555 5 C 1 2 1