1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Aono, S. Bentrop, D. Bertini, I. Donaire, A. Luchinat, C. Niikura, Y. Rosato, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking Fe3 S4 295.795 FE3-S4 CLUSTER non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking Fe4 S4 351.640 IRON/SULFUR CLUSTER non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 37 9812 9826 10.1021/bi972818b 9657695 Solution structure of the oxidized Fe7S8 ferredoxin from the thermophilic bacterium Bacillus schlegelii by 1H NMR spectroscopy. 1998 GW J.Biol.Inorg.Chem. JJBCFA 2154 0949-8257 1 523 1H NMR Studies of the Fe7S8 Ferredoxin from Bacillus Schlegelii: A Further Attempt to Understand Fe3S4 Clusters 1996 US Biochem.Biophys.Res.Commun. BBRCA9 0146 0006-291X 201 938 Cloning and Expression of the Gene Encoding the 7Fe Type Ferredoxin from a Thermophilic Hydrogen Oxidizing Bacterium, Bacillus Schlegelii 1994 JA J.Biochem.(Tokyo) JOBIAO 0418 0021-924X 112 792 Purification and Characterization of a 7Fe Ferredoxin from a Thermophilic Hydrogen-Oxidizing Bacterium, Bacillus Schlegelii 1992 10.2210/pdb1bd6/pdb pdb_00001bd6 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 8750.828 7-FE FERREDOXIN 1 man polymer 295.795 FE3-S4 CLUSTER 1 syn non-polymer 351.640 IRON/SULFUR CLUSTER 1 syn non-polymer no no AYVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDFVPEEWKSYIQKNRDFFKK AYVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDFVPEEWKSYIQKNRDFFKK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Bacillus Escherichia sample ATCC 43741 1484 Bacillus schlegelii 562 Escherichia coli JM 109 BACTERIUM PKKFD54 database_2 pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other 1 0 1998-06-17 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_nmr_software.name _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1998-05-06 REL REL F3S FE3-S4 CLUSTER SF4 IRON/SULFUR CLUSTER 300 1 NOESY TOCSY DQF-COSY 6.5 288 K THE STRUCTURE CALCULATIONS WERE CARRIED OUT WITH THE PROGRAM DYANA (BY GUNTERT,MUMENTHALER,WUTHRICH). THE 20 STRUCTURES OF THE DYANA FAMILY WITH THE LOWEST TARGET FUNCTION VALUES WERE REFINED BY RESTRAINED ENERGY MINIMIZATION (REM) AND RESTRAINED MOLECULAR DYNAMICS (RMD) IN VACUO. THE STRUCTURE IN THIS ENTRY REPRESENTS THE MINIMIZED AVERAGE STRUCTURE OF THE RMD FAMILY. REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. torsion angle dynamics PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM, FERGUSON,SEIBEL,SINGH,WEINER,KOLLMAN refinement Amber 4.1 structure solution DYANA 500 Bruker AMX600 600 Bruker DRX 500 FS3 78 2 F3S F3S 78 A FS4 79 3 SF4 SF4 79 A ALA 1 n 1 ALA 1 A TYR 2 n 2 TYR 2 A VAL 3 n 3 VAL 3 A ILE 4 n 4 ILE 4 A THR 5 n 5 THR 5 A GLU 6 n 6 GLU 6 A PRO 7 n 7 PRO 7 A CYS 8 n 8 CYS 8 A ILE 9 n 9 ILE 9 A GLY 10 n 10 GLY 10 A THR 11 n 11 THR 11 A LYS 12 n 12 LYS 12 A ASP 13 n 13 ASP 13 A ALA 14 n 14 ALA 14 A SER 15 n 15 SER 15 A CYS 16 n 16 CYS 16 A VAL 17 n 17 VAL 17 A GLU 18 n 18 GLU 18 A VAL 19 n 19 VAL 19 A CYS 20 n 20 CYS 20 A PRO 21 n 21 PRO 21 A VAL 22 n 22 VAL 22 A ASP 23 n 23 ASP 23 A CYS 24 n 24 CYS 24 A ILE 25 n 25 ILE 25 A HIS 26 n 26 HIS 26 A GLU 27 n 27 GLU 27 A GLY 28 n 28 GLY 28 A GLU 29 n 29 GLU 29 A ASP 30 n 30 ASP 30 A GLN 31 n 31 GLN 31 A TYR 32 n 32 TYR 32 A TYR 33 n 33 TYR 33 A ILE 34 n 34 ILE 34 A ASP 35 n 35 ASP 35 A PRO 36 n 36 PRO 36 A ASP 37 n 37 ASP 37 A VAL 38 n 38 VAL 38 A CYS 39 n 39 CYS 39 A ILE 40 n 40 ILE 40 A ASP 41 n 41 ASP 41 A CYS 42 n 42 CYS 42 A GLY 43 n 43 GLY 43 A ALA 44 n 44 ALA 44 A CYS 45 n 45 CYS 45 A GLU 46 n 46 GLU 46 A ALA 47 n 47 ALA 47 A VAL 48 n 48 VAL 48 A CYS 49 n 49 CYS 49 A PRO 50 n 50 PRO 50 A VAL 51 n 51 VAL 51 A SER 52 n 52 SER 52 A ALA 53 n 53 ALA 53 A ILE 54 n 54 ILE 54 A TYR 55 n 55 TYR 55 A HIS 56 n 56 HIS 56 A GLU 57 n 57 GLU 57 A ASP 58 n 58 ASP 58 A PHE 59 n 59 PHE 59 A VAL 60 n 60 VAL 60 A PRO 61 n 61 PRO 61 A GLU 62 n 62 GLU 62 A GLU 63 n 63 GLU 63 A TRP 64 n 64 TRP 64 A LYS 65 n 65 LYS 65 A SER 66 n 66 SER 66 A TYR 67 n 67 TYR 67 A ILE 68 n 68 ILE 68 A GLN 69 n 69 GLN 69 A LYS 70 n 70 LYS 70 A ASN 71 n 71 ASN 71 A ARG 72 n 72 ARG 72 A ASP 73 n 73 ASP 73 A PHE 74 n 74 PHE 74 A PHE 75 n 75 PHE 75 A LYS 76 n 76 LYS 76 A LYS 77 n 77 LYS 77 A author_defined_assembly 1 monomeric A CYS 8 A SG CYS 8 1_555 A F3S 78 B FE1 F3S 1_555 A F3S 78 B S1 F3S 1_555 117.9 A CYS 8 A SG CYS 8 1_555 A F3S 78 B FE1 F3S 1_555 A F3S 78 B S2 F3S 1_555 116.6 A F3S 78 B S1 F3S 1_555 A F3S 78 B FE1 F3S 1_555 A F3S 78 B S2 F3S 1_555 103.2 A CYS 8 A SG CYS 8 1_555 A F3S 78 B FE1 F3S 1_555 A F3S 78 B S3 F3S 1_555 113.8 A F3S 78 B S1 F3S 1_555 A F3S 78 B FE1 F3S 1_555 A F3S 78 B S3 F3S 1_555 101.4 A F3S 78 B S2 F3S 1_555 A F3S 78 B FE1 F3S 1_555 A F3S 78 B S3 F3S 1_555 101.5 A CYS 16 A SG CYS 16 1_555 A F3S 78 B FE4 F3S 1_555 A F3S 78 B S2 F3S 1_555 112.6 A CYS 16 A SG CYS 16 1_555 A F3S 78 B FE4 F3S 1_555 A F3S 78 B S3 F3S 1_555 109.8 A F3S 78 B S2 F3S 1_555 A F3S 78 B FE4 F3S 1_555 A F3S 78 B S3 F3S 1_555 110.1 A CYS 16 A SG CYS 16 1_555 A F3S 78 B FE4 F3S 1_555 A F3S 78 B S4 F3S 1_555 113.2 A F3S 78 B S2 F3S 1_555 A F3S 78 B FE4 F3S 1_555 A F3S 78 B S4 F3S 1_555 98.9 A F3S 78 B S3 F3S 1_555 A F3S 78 B FE4 F3S 1_555 A F3S 78 B S4 F3S 1_555 111.8 A CYS 20 A SG CYS 20 1_555 A SF4 79 C FE1 SF4 1_555 A SF4 79 C S2 SF4 1_555 116.5 A CYS 20 A SG CYS 20 1_555 A SF4 79 C FE1 SF4 1_555 A SF4 79 C S3 SF4 1_555 115.2 A SF4 79 C S2 SF4 1_555 A SF4 79 C FE1 SF4 1_555 A SF4 79 C S3 SF4 1_555 104.1 A CYS 20 A SG CYS 20 1_555 A SF4 79 C FE1 SF4 1_555 A SF4 79 C S4 SF4 1_555 113.5 A SF4 79 C S2 SF4 1_555 A SF4 79 C FE1 SF4 1_555 A SF4 79 C S4 SF4 1_555 102.1 A SF4 79 C S3 SF4 1_555 A SF4 79 C FE1 SF4 1_555 A SF4 79 C S4 SF4 1_555 103.8 A CYS 39 A SG CYS 39 1_555 A SF4 79 C FE2 SF4 1_555 A SF4 79 C S1 SF4 1_555 105.1 A CYS 39 A SG CYS 39 1_555 A SF4 79 C FE2 SF4 1_555 A SF4 79 C S3 SF4 1_555 114.1 A SF4 79 C S1 SF4 1_555 A SF4 79 C FE2 SF4 1_555 A SF4 79 C S3 SF4 1_555 102.6 A CYS 39 A SG CYS 39 1_555 A SF4 79 C FE2 SF4 1_555 A SF4 79 C S4 SF4 1_555 111.9 A SF4 79 C S1 SF4 1_555 A SF4 79 C FE2 SF4 1_555 A SF4 79 C S4 SF4 1_555 110.5 A SF4 79 C S3 SF4 1_555 A SF4 79 C FE2 SF4 1_555 A SF4 79 C S4 SF4 1_555 112.0 A CYS 42 A SG CYS 42 1_555 A SF4 79 C FE3 SF4 1_555 A SF4 79 C S1 SF4 1_555 109.2 A CYS 42 A SG CYS 42 1_555 A SF4 79 C FE3 SF4 1_555 A SF4 79 C S2 SF4 1_555 112.7 A SF4 79 C S1 SF4 1_555 A SF4 79 C FE3 SF4 1_555 A SF4 79 C S2 SF4 1_555 104.6 A CYS 42 A SG CYS 42 1_555 A SF4 79 C FE3 SF4 1_555 A SF4 79 C S4 SF4 1_555 115.1 A SF4 79 C S1 SF4 1_555 A SF4 79 C FE3 SF4 1_555 A SF4 79 C S4 SF4 1_555 104.5 A SF4 79 C S2 SF4 1_555 A SF4 79 C FE3 SF4 1_555 A SF4 79 C S4 SF4 1_555 109.8 A CYS 45 A SG CYS 45 1_555 A SF4 79 C FE4 SF4 1_555 A SF4 79 C S1 SF4 1_555 98.8 A CYS 45 A SG CYS 45 1_555 A SF4 79 C FE4 SF4 1_555 A SF4 79 C S2 SF4 1_555 109.9 A SF4 79 C S1 SF4 1_555 A SF4 79 C FE4 SF4 1_555 A SF4 79 C S2 SF4 1_555 107.6 A CYS 45 A SG CYS 45 1_555 A SF4 79 C FE4 SF4 1_555 A SF4 79 C S3 SF4 1_555 126.5 A SF4 79 C S1 SF4 1_555 A SF4 79 C FE4 SF4 1_555 A SF4 79 C S3 SF4 1_555 104.6 A SF4 79 C S2 SF4 1_555 A SF4 79 C FE4 SF4 1_555 A SF4 79 C S3 SF4 1_555 107.7 A CYS 49 A SG CYS 49 1_555 A F3S 78 B FE3 F3S 1_555 A F3S 78 B S1 F3S 1_555 119.5 A CYS 49 A SG CYS 49 1_555 A F3S 78 B FE3 F3S 1_555 A F3S 78 B S3 F3S 1_555 111.4 A F3S 78 B S1 F3S 1_555 A F3S 78 B FE3 F3S 1_555 A F3S 78 B S3 F3S 1_555 108.2 A CYS 49 A SG CYS 49 1_555 A F3S 78 B FE3 F3S 1_555 A F3S 78 B S4 F3S 1_555 109.4 A F3S 78 B S1 F3S 1_555 A F3S 78 B FE3 F3S 1_555 A F3S 78 B S4 F3S 1_555 101.8 A F3S 78 B S3 F3S 1_555 A F3S 78 B FE3 F3S 1_555 A F3S 78 B S4 F3S 1_555 105.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O HIS 26 A O HIS 26 A N TYR 33 A N TYR 33 A N VAL 3 A N VAL 3 A O TYR 55 A O TYR 55 1 A CA ALA 1 WRONG HAND 1 A TYR 32 0.085 SIDE CHAIN 1 A TYR 33 0.090 SIDE CHAIN 1 A PHE 74 0.089 SIDE CHAIN 1 A PHE 75 0.076 SIDE CHAIN 1 A GLU 6 -15.94 -66.19 1 A LYS 12 76.07 -42.07 1 A ALA 14 -169.58 -50.68 1 A VAL 17 9.98 -79.04 1 A ASP 23 40.09 22.04 1 A ASP 30 -110.29 -72.29 1 A ASP 41 48.15 78.83 1 A LYS 76 -84.95 -153.71 model building DYANA refinement AMBER refinement DYANA 7-FE FERREDOXIN FROM BACILLUS SCHLEGELII, NMR, MINIMIZED AVERAGE STRUCTURE 1 Y N 2 N N 3 N N A GLU 6 A GLU 6 HELX_P A CYS 8 A CYS 8 5 1 3 A VAL 17 A VAL 17 HELX_P A VAL 19 A VAL 19 5 2 3 A ALA 44 A ALA 44 HELX_P A VAL 48 A VAL 48 1 3 5 A PRO 50 A PRO 50 HELX_P A SER 52 A SER 52 5 4 3 A GLU 62 A GLU 62 HELX_P A PHE 75 A PHE 75 1 5 14 metalc 2.115 A CYS 8 A SG CYS 8 1_555 A F3S 78 B FE1 F3S 1_555 metalc 2.149 A CYS 16 A SG CYS 16 1_555 A F3S 78 B FE4 F3S 1_555 metalc 2.052 A CYS 20 A SG CYS 20 1_555 A SF4 79 C FE1 SF4 1_555 metalc 2.047 A CYS 39 A SG CYS 39 1_555 A SF4 79 C FE2 SF4 1_555 metalc 2.126 A CYS 42 A SG CYS 42 1_555 A SF4 79 C FE3 SF4 1_555 metalc 2.043 A CYS 45 A SG CYS 45 1_555 A SF4 79 C FE4 SF4 1_555 metalc 2.189 A CYS 49 A SG CYS 49 1_555 A F3S 78 B FE3 F3S 1_555 ELECTRON TRANSPORT ELECTRON TRANSPORT, IRON-SULFUR A ALA 14 A ALA 14 1 A SER 15 A SER 15 3.32 FER_BACSC UNP 1 1 Q45560 AYVITEPCIGTKDASCVEVCPVDCIHEGEDQYYIDPDVCIDCGACEAVCPVSAIYHEDFVPEEWKSYIQKNRDFFKK 1 77 1BD6 1 77 Q45560 A 1 1 77 2 2 anti-parallel anti-parallel A ILE 25 A ILE 25 A GLU 27 A GLU 27 A TYR 32 A TYR 32 A ILE 34 A ILE 34 A TYR 2 A TYR 2 A VAL 3 A VAL 3 A TYR 55 A TYR 55 A HIS 56 A HIS 56 BINDING SITE FOR RESIDUE F3S A 78 A F3S 78 Software 6 BINDING SITE FOR RESIDUE SF4 A 79 A SF4 79 Software 7 A ILE 4 A ILE 4 6 1_555 A CYS 8 A CYS 8 6 1_555 A SER 15 A SER 15 6 1_555 A CYS 16 A CYS 16 6 1_555 A CYS 49 A CYS 49 6 1_555 A ILE 54 A ILE 54 6 1_555 A TYR 2 A TYR 2 7 1_555 A CYS 20 A CYS 20 7 1_555 A ILE 34 A ILE 34 7 1_555 A CYS 39 A CYS 39 7 1_555 A ILE 40 A ILE 40 7 1_555 A CYS 42 A CYS 42 7 1_555 A CYS 45 A CYS 45 7 1_555 1 P 1