0.015913
0.000000
0.004273
0.000000
0.017759
0.000000
0.000000
0.000000
0.019544
0.00000
0.00000
0.00000
Schildbach, J.F.
Karzai, A.W.
Raumann, B.E.
Sauer, R.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
105.03
90.00
62.840
56.310
52.980
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
96
811
817
10.1073/pnas.96.3.811
9927650
Origins of DNA-binding specificity: role of protein contacts with the DNA backbone.
1999
UK
Nature
NATUAS
0006
0028-0836
367
754
DNA Recognition by Beta-Sheets in the Arc Repressor-Operator Crystal Structure
1994
10.2210/pdb1bdv/pdb
pdb_00001bdv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
200
1
MIRRORS
IMAGE PLATE
1996-11-15
RIGAKU RAXIS II
NI FILTER
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
6756.387
DNA (5'-D(*TP*AP*TP*AP*GP*TP*AP*GP*AP*GP*TP*GP*CP*TP*TP*CP*TP*AP*TP*CP*AP*T)-3')
1
syn
polymer
6743.404
DNA (5'-D(*AP*AP*TP*GP*AP*TP*AP*GP*AP*AP*GP*CP*AP*CP*TP*CP*TP*AP*CP*TP*AP*T)-3')
1
syn
polymer
6190.229
PROTEIN (ARC FV10 REPRESSOR)
F10V
4
man
polymer
18.015
water
34
nat
water
no
no
(DT)(DA)(DT)(DA)(DG)(DT)(DA)(DG)(DA)(DG)(DT)(DG)(DC)(DT)(DT)(DC)(DT)(DA)(DT)(DC)
(DA)(DT)
TATAGTAGAGTGCTTCTATCAT
E
polydeoxyribonucleotide
no
no
(DA)(DA)(DT)(DG)(DA)(DT)(DA)(DG)(DA)(DA)(DG)(DC)(DA)(DC)(DT)(DC)(DT)(DA)(DC)(DT)
(DA)(DT)
AATGATAGAAGCACTCTACTAT
F
polydeoxyribonucleotide
no
no
MKGMSKMPQVNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGA
MKGMSKMPQVNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGA
A,B,C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
P22-like viruses
Escherichia
sample
10754
Enterobacteria phage P22
562
Escherichia coli
PLASMID
1
2.37
48.02
6.5
pH 6.5
PEG 400
1
GLYCEROL
1
CACODYLATE
1
MGCL2
1
COBALTHEXAMMINE
1
5.219
1
20
E
2
F
22
-1.974
E_DA2:DT22_F
1
-16.129
-0.463
0.169
-0.038
-3.931
1
20
E
3
F
21
6.979
E_DT3:DA21_F
2
2.616
-0.190
0.065
0.001
-8.406
1
20
E
4
F
20
3.092
E_DA4:DT20_F
3
-5.457
0.167
-0.616
-0.304
-14.810
1
19
E
5
F
19
4.623
E_DG5:DC19_F
4
6.348
-0.807
-0.535
-0.341
-9.417
1
20
E
6
F
18
-4.766
E_DT6:DA18_F
5
-1.632
-0.488
0.085
-0.104
-1.719
1
20
E
7
F
17
-1.142
E_DA7:DT17_F
6
4.754
-0.469
0.272
-0.140
8.541
1
19
E
8
F
16
2.199
E_DG8:DC16_F
7
1.082
-0.376
0.219
0.113
-1.555
1
20
E
9
F
15
2.647
E_DA9:DT15_F
8
-9.979
0.316
-0.406
0.027
8.263
1
19
E
10
F
14
2.337
E_DG10:DC14_F
9
-7.722
-0.056
0.627
0.075
-1.503
1
20
E
11
F
13
0.877
E_DT11:DA13_F
10
-18.968
-0.260
0.386
-0.100
-5.206
1
19
E
12
F
12
7.141
E_DG12:DC12_F
11
4.869
-0.584
-0.214
0.091
-0.366
1
19
E
13
F
11
0.433
E_DC13:DG11_F
12
-26.434
-0.167
0.473
-0.110
-5.261
1
20
E
14
F
10
-12.579
E_DT14:DA10_F
13
-20.624
-0.597
-0.255
0.008
-9.168
1
20
E
15
F
9
-6.072
E_DT15:DA9_F
14
-4.686
-0.991
-0.237
-0.135
0.173
1
19
E
16
F
8
-1.802
E_DC16:DG8_F
15
-11.631
0.015
-0.087
-0.189
6.030
1
20
E
17
F
7
0.889
E_DT17:DA7_F
16
-2.251
0.464
-0.289
-0.404
6.780
1
20
E
18
F
6
2.339
E_DA18:DT6_F
17
1.863
-0.222
0.347
-0.090
15.004
1
20
E
19
F
5
-9.129
E_DT19:DA5_F
18
-2.675
-0.586
-0.167
-0.134
5.600
1
19
E
20
F
4
2.219
E_DC20:DG4_F
19
-4.463
0.505
-0.506
-0.194
-5.294
1
20
E
21
F
3
7.763
E_DA21:DT3_F
20
-1.439
-0.205
-0.499
-0.297
10.058
1
20
E
22
F
2
11.594
E_DT22:DA2_F
21
-5.997
0.717
-0.219
-0.031
3.397
33.808
E
E
2
3
5.765
F
F
22
21
3.499
3.348
1.078
-0.987
EE_DA2DT3:DA21DT22_FF
1
0.279
-0.480
33.646
-2.269
-1.807
2.875
29.340
E
E
3
4
20.611
F
F
21
20
3.411
10.228
-0.551
-0.918
EE_DT3DA4:DT20DA21_FF
2
0.815
-1.643
27.524
-4.000
1.262
3.188
30.532
E
E
4
5
12.792
F
F
20
19
3.458
6.677
-0.382
-0.978
EE_DA4DG5:DC19DT20_FF
3
-2.396
4.589
29.715
-3.224
0.235
3.024
29.281
E
E
5
6
15.260
F
F
19
18
3.411
7.623
-0.186
-1.094
EE_DG5DT6:DA18DC19_FF
4
-2.001
4.006
28.223
-3.816
-0.066
2.915
44.117
E
E
6
7
-22.887
F
F
18
17
3.311
-16.796
0.186
0.470
EE_DT6DA7:DT17DA18_FF
5
0.827
-1.127
40.935
2.190
-0.170
2.832
32.280
E
E
7
8
23.029
F
F
17
16
3.158
12.481
-0.794
-0.127
EE_DA7DG8:DC16DT17_FF
6
1.667
-3.076
29.783
-2.344
1.710
3.353
32.994
E
E
8
9
21.152
F
F
16
15
3.650
11.731
0.375
-0.249
EE_DG8DA9:DT15DC16_FF
7
4.189
-7.553
30.613
-2.657
0.131
3.079
35.484
E
E
9
10
3.170
F
F
15
14
2.867
1.903
-1.089
0.438
EE_DA9DG10:DC14DT15_FF
8
-10.746
17.904
33.815
0.459
0.320
3.268
31.667
E
E
10
11
15.475
F
F
14
13
3.584
8.342
-0.490
-0.592
EE_DG10DT11:DA13DC14_FF
9
2.274
-4.219
30.493
-2.730
1.347
3.402
38.084
E
E
11
12
-9.047
F
F
13
12
3.571
-5.881
1.315
1.029
EE_DT11DG12:DC12DA13_FF
10
0.747
-1.148
37.636
2.377
-1.914
3.028
41.136
E
E
12
13
-16.626
F
F
12
11
3.210
-11.517
-1.571
0.773
EE_DG12DC13:DG11DC12_FF
11
-4.413
6.371
39.320
2.320
1.769
3.190
32.690
E
E
13
14
20.730
F
F
11
10
3.705
11.432
-0.691
-0.798
EE_DC13DT14:DA10DG11_FF
12
0.911
-1.652
30.663
-3.573
1.399
3.345
34.515
E
E
14
15
-4.861
F
F
10
9
3.347
-2.880
1.247
0.242
EE_DT14DT15:DA9DA10_FF
13
0.845
-1.427
34.388
0.865
-1.967
3.193
33.767
E
E
15
16
10.150
F
F
9
8
3.277
5.867
0.069
-0.205
EE_DT15DC16:DG8DA9_FF
14
-0.710
1.228
33.261
-1.299
-0.233
3.177
31.640
E
E
16
17
14.867
F
F
8
7
3.176
8.010
1.223
0.007
EE_DC16DT17:DA7DG8_FF
15
2.976
-5.523
30.492
-1.454
-1.698
3.345
36.756
E
E
17
18
-10.805
F
F
7
6
3.449
-6.776
0.017
0.263
EE_DT17DA18:DT6DA7_FF
16
-1.240
1.977
36.127
1.384
-0.204
3.154
23.203
E
E
18
19
0.866
F
F
6
5
3.182
0.348
0.011
-1.174
EE_DA18DT19:DA5DT6_FF
17
1.986
-4.944
23.117
-3.036
0.638
3.090
41.115
E
E
19
20
22.865
F
F
5
4
3.643
15.658
0.683
-0.946
EE_DT19DC20:DG4DA5_FF
18
4.090
-5.973
37.923
-3.173
-0.495
3.117
29.490
E
E
20
21
17.133
F
F
4
3
3.579
8.596
-0.051
-1.087
EE_DC20DA21:DT3DG4_FF
19
-1.606
3.201
28.191
-4.055
-0.258
2.796
34.962
E
E
21
22
4.245
F
F
3
2
2.834
2.548
-0.180
-0.476
EE_DA21DT22:DA2DT3_FF
20
-0.845
1.408
34.862
-1.123
0.189
struct_conf
struct_conf_type
database_2
struct_ref_seq_dif
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Database references
Refinement description
1
0
1999-01-06
1
1
2008-05-22
1
2
2011-07-13
1
3
2017-11-29
1
4
2021-11-03
1
5
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
Y
NDB
1998-05-11
REL
HOH
water
1PAR
PDB ENTRY 1PAR
PDB
experimental model
HOH
102
4
HOH
HOH
102
E
HOH
103
4
HOH
HOH
103
E
HOH
126
4
HOH
HOH
126
E
HOH
122
4
HOH
HOH
122
F
HOH
133
4
HOH
HOH
133
F
HOH
134
4
HOH
HOH
134
F
HOH
101
4
HOH
HOH
101
A
HOH
104
4
HOH
HOH
104
A
HOH
105
4
HOH
HOH
105
A
HOH
107
4
HOH
HOH
107
A
HOH
108
4
HOH
HOH
108
A
HOH
114
4
HOH
HOH
114
A
HOH
115
4
HOH
HOH
115
A
HOH
118
4
HOH
HOH
118
A
HOH
119
4
HOH
HOH
119
A
HOH
120
4
HOH
HOH
120
A
HOH
106
4
HOH
HOH
106
B
HOH
110
4
HOH
HOH
110
B
HOH
111
4
HOH
HOH
111
B
HOH
112
4
HOH
HOH
112
B
HOH
113
4
HOH
HOH
113
B
HOH
116
4
HOH
HOH
116
B
HOH
117
4
HOH
HOH
117
B
HOH
123
4
HOH
HOH
123
C
HOH
124
4
HOH
HOH
124
C
HOH
127
4
HOH
HOH
127
C
HOH
129
4
HOH
HOH
129
C
HOH
131
4
HOH
HOH
131
C
HOH
109
4
HOH
HOH
109
D
HOH
121
4
HOH
HOH
121
D
HOH
125
4
HOH
HOH
125
D
HOH
128
4
HOH
HOH
128
D
HOH
130
4
HOH
HOH
130
D
HOH
132
4
HOH
HOH
132
D
T
1
n
1
DT
1
E
A
2
n
2
DA
2
E
T
3
n
3
DT
3
E
A
4
n
4
DA
4
E
G
5
n
5
DG
5
E
T
6
n
6
DT
6
E
A
7
n
7
DA
7
E
G
8
n
8
DG
8
E
A
9
n
9
DA
9
E
G
10
n
10
DG
10
E
T
11
n
11
DT
11
E
G
12
n
12
DG
12
E
C
13
n
13
DC
13
E
T
14
n
14
DT
14
E
T
15
n
15
DT
15
E
C
16
n
16
DC
16
E
T
17
n
17
DT
17
E
A
18
n
18
DA
18
E
T
19
n
19
DT
19
E
C
20
n
20
DC
20
E
A
21
n
21
DA
21
E
T
22
n
22
DT
22
E
A
1
n
1
DA
1
F
A
2
n
2
DA
2
F
T
3
n
3
DT
3
F
G
4
n
4
DG
4
F
A
5
n
5
DA
5
F
T
6
n
6
DT
6
F
A
7
n
7
DA
7
F
G
8
n
8
DG
8
F
A
9
n
9
DA
9
F
A
10
n
10
DA
10
F
G
11
n
11
DG
11
F
C
12
n
12
DC
12
F
A
13
n
13
DA
13
F
C
14
n
14
DC
14
F
T
15
n
15
DT
15
F
C
16
n
16
DC
16
F
T
17
n
17
DT
17
F
A
18
n
18
DA
18
F
C
19
n
19
DC
19
F
T
20
n
20
DT
20
F
A
21
n
21
DA
21
F
T
22
n
22
DT
22
F
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
MET
7
n
7
MET
7
A
PRO
8
n
8
PRO
8
A
GLN
9
n
9
GLN
9
A
VAL
10
n
10
VAL
10
A
ASN
11
n
11
ASN
11
A
LEU
12
n
12
LEU
12
A
ARG
13
n
13
ARG
13
A
TRP
14
n
14
TRP
14
A
PRO
15
n
15
PRO
15
A
ARG
16
n
16
ARG
16
A
GLU
17
n
17
GLU
17
A
VAL
18
n
18
VAL
18
A
LEU
19
n
19
LEU
19
A
ASP
20
n
20
ASP
20
A
LEU
21
n
21
LEU
21
A
VAL
22
n
22
VAL
22
A
ARG
23
n
23
ARG
23
A
LYS
24
n
24
LYS
24
A
VAL
25
n
25
VAL
25
A
ALA
26
n
26
ALA
26
A
GLU
27
n
27
GLU
27
A
GLU
28
n
28
GLU
28
A
ASN
29
n
29
ASN
29
A
GLY
30
n
30
GLY
30
A
ARG
31
n
31
ARG
31
A
SER
32
n
32
SER
32
A
VAL
33
n
33
VAL
33
A
ASN
34
n
34
ASN
34
A
SER
35
n
35
SER
35
A
GLU
36
n
36
GLU
36
A
ILE
37
n
37
ILE
37
A
TYR
38
n
38
TYR
38
A
GLN
39
n
39
GLN
39
A
ARG
40
n
40
ARG
40
A
VAL
41
n
41
VAL
41
A
MET
42
n
42
MET
42
A
GLU
43
n
43
GLU
43
A
SER
44
n
44
SER
44
A
PHE
45
n
45
PHE
45
A
LYS
46
n
46
LYS
46
A
LYS
47
n
47
LYS
47
A
GLU
48
n
48
GLU
48
A
GLY
49
n
49
GLY
49
A
ARG
50
n
50
ARG
50
A
ILE
51
n
51
ILE
51
A
GLY
52
n
52
GLY
52
A
n
53
53
A
MET
1
n
1
MET
1
B
LYS
2
n
2
LYS
2
B
GLY
3
n
3
GLY
3
B
MET
4
n
4
MET
4
B
SER
5
n
5
SER
5
B
LYS
6
n
6
LYS
6
B
MET
7
n
7
MET
7
B
PRO
8
n
8
PRO
8
B
GLN
9
n
9
GLN
9
B
VAL
10
n
10
VAL
10
B
ASN
11
n
11
ASN
11
B
LEU
12
n
12
LEU
12
B
ARG
13
n
13
ARG
13
B
TRP
14
n
14
TRP
14
B
PRO
15
n
15
PRO
15
B
ARG
16
n
16
ARG
16
B
GLU
17
n
17
GLU
17
B
VAL
18
n
18
VAL
18
B
LEU
19
n
19
LEU
19
B
ASP
20
n
20
ASP
20
B
LEU
21
n
21
LEU
21
B
VAL
22
n
22
VAL
22
B
ARG
23
n
23
ARG
23
B
LYS
24
n
24
LYS
24
B
VAL
25
n
25
VAL
25
B
ALA
26
n
26
ALA
26
B
GLU
27
n
27
GLU
27
B
GLU
28
n
28
GLU
28
B
ASN
29
n
29
ASN
29
B
GLY
30
n
30
GLY
30
B
ARG
31
n
31
ARG
31
B
SER
32
n
32
SER
32
B
VAL
33
n
33
VAL
33
B
ASN
34
n
34
ASN
34
B
SER
35
n
35
SER
35
B
GLU
36
n
36
GLU
36
B
ILE
37
n
37
ILE
37
B
TYR
38
n
38
TYR
38
B
GLN
39
n
39
GLN
39
B
ARG
40
n
40
ARG
40
B
VAL
41
n
41
VAL
41
B
MET
42
n
42
MET
42
B
GLU
43
n
43
GLU
43
B
SER
44
n
44
SER
44
B
PHE
45
n
45
PHE
45
B
LYS
46
n
46
LYS
46
B
LYS
47
n
47
LYS
47
B
GLU
48
n
48
GLU
48
B
GLY
49
n
49
GLY
49
B
ARG
50
n
50
ARG
50
B
ILE
51
n
51
ILE
51
B
GLY
52
n
52
GLY
52
B
ALA
53
n
53
ALA
53
B
n
1
1
C
n
2
2
C
n
3
3
C
n
4
4
C
n
5
5
C
n
6
6
C
MET
7
n
7
MET
7
C
PRO
8
n
8
PRO
8
C
GLN
9
n
9
GLN
9
C
VAL
10
n
10
VAL
10
C
ASN
11
n
11
ASN
11
C
LEU
12
n
12
LEU
12
C
ARG
13
n
13
ARG
13
C
TRP
14
n
14
TRP
14
C
PRO
15
n
15
PRO
15
C
ARG
16
n
16
ARG
16
C
GLU
17
n
17
GLU
17
C
VAL
18
n
18
VAL
18
C
LEU
19
n
19
LEU
19
C
ASP
20
n
20
ASP
20
C
LEU
21
n
21
LEU
21
C
VAL
22
n
22
VAL
22
C
ARG
23
n
23
ARG
23
C
LYS
24
n
24
LYS
24
C
VAL
25
n
25
VAL
25
C
ALA
26
n
26
ALA
26
C
GLU
27
n
27
GLU
27
C
GLU
28
n
28
GLU
28
C
ASN
29
n
29
ASN
29
C
GLY
30
n
30
GLY
30
C
ARG
31
n
31
ARG
31
C
SER
32
n
32
SER
32
C
VAL
33
n
33
VAL
33
C
ASN
34
n
34
ASN
34
C
SER
35
n
35
SER
35
C
GLU
36
n
36
GLU
36
C
ILE
37
n
37
ILE
37
C
TYR
38
n
38
TYR
38
C
GLN
39
n
39
GLN
39
C
ARG
40
n
40
ARG
40
C
VAL
41
n
41
VAL
41
C
MET
42
n
42
MET
42
C
GLU
43
n
43
GLU
43
C
SER
44
n
44
SER
44
C
PHE
45
n
45
PHE
45
C
LYS
46
n
46
LYS
46
C
LYS
47
n
47
LYS
47
C
GLU
48
n
48
GLU
48
C
GLY
49
n
49
GLY
49
C
n
50
50
C
n
51
51
C
n
52
52
C
n
53
53
C
MET
1
n
1
MET
1
D
LYS
2
n
2
LYS
2
D
GLY
3
n
3
GLY
3
D
MET
4
n
4
MET
4
D
SER
5
n
5
SER
5
D
LYS
6
n
6
LYS
6
D
MET
7
n
7
MET
7
D
PRO
8
n
8
PRO
8
D
GLN
9
n
9
GLN
9
D
VAL
10
n
10
VAL
10
D
ASN
11
n
11
ASN
11
D
LEU
12
n
12
LEU
12
D
ARG
13
n
13
ARG
13
D
TRP
14
n
14
TRP
14
D
PRO
15
n
15
PRO
15
D
ARG
16
n
16
ARG
16
D
GLU
17
n
17
GLU
17
D
VAL
18
n
18
VAL
18
D
LEU
19
n
19
LEU
19
D
ASP
20
n
20
ASP
20
D
LEU
21
n
21
LEU
21
D
VAL
22
n
22
VAL
22
D
ARG
23
n
23
ARG
23
D
LYS
24
n
24
LYS
24
D
VAL
25
n
25
VAL
25
D
ALA
26
n
26
ALA
26
D
GLU
27
n
27
GLU
27
D
GLU
28
n
28
GLU
28
D
ASN
29
n
29
ASN
29
D
GLY
30
n
30
GLY
30
D
ARG
31
n
31
ARG
31
D
SER
32
n
32
SER
32
D
VAL
33
n
33
VAL
33
D
ASN
34
n
34
ASN
34
D
SER
35
n
35
SER
35
D
GLU
36
n
36
GLU
36
D
ILE
37
n
37
ILE
37
D
TYR
38
n
38
TYR
38
D
GLN
39
n
39
GLN
39
D
ARG
40
n
40
ARG
40
D
VAL
41
n
41
VAL
41
D
MET
42
n
42
MET
42
D
GLU
43
n
43
GLU
43
D
SER
44
n
44
SER
44
D
PHE
45
n
45
PHE
45
D
LYS
46
n
46
LYS
46
D
LYS
47
n
47
LYS
47
D
GLU
48
n
48
GLU
48
D
GLY
49
n
49
GLY
49
D
ARG
50
n
50
ARG
50
D
n
51
51
D
n
52
52
D
n
53
53
D
author_defined_assembly
6
hexameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
12
C
N
LEU
12
B
O
VAL
10
D
O
VAL
10
C
N
LEU
12
E
N
LEU
12
D
O
VAL
10
F
O
VAL
10
1
A
CG
GLU
17
C
CG
GLU
17
1
Y
1
A
CD
GLU
17
C
CD
GLU
17
1
Y
1
A
OE1
GLU
17
C
OE1
GLU
17
1
Y
1
A
OE2
GLU
17
C
OE2
GLU
17
1
Y
1
A
CG
GLU
27
C
CG
GLU
27
1
Y
1
A
CD
GLU
27
C
CD
GLU
27
1
Y
1
A
OE1
GLU
27
C
OE1
GLU
27
1
Y
1
A
OE2
GLU
27
C
OE2
GLU
27
1
Y
1
B
CG
LYS
2
D
CG
LYS
2
1
Y
1
B
CD
LYS
2
D
CD
LYS
2
1
Y
1
B
CE
LYS
2
D
CE
LYS
2
1
Y
1
B
NZ
LYS
2
D
NZ
LYS
2
1
Y
1
B
OG
SER
5
D
OG
SER
5
1
Y
1
B
CG
LYS
6
D
CG
LYS
6
1
Y
1
B
CD
LYS
6
D
CD
LYS
6
1
Y
1
B
CE
LYS
6
D
CE
LYS
6
1
Y
1
B
NZ
LYS
6
D
NZ
LYS
6
1
Y
1
B
CG
ARG
16
D
CG
ARG
16
1
Y
1
B
CD
ARG
16
D
CD
ARG
16
1
Y
1
B
NE
ARG
16
D
NE
ARG
16
1
Y
1
B
CZ
ARG
16
D
CZ
ARG
16
1
Y
1
B
NH1
ARG
16
D
NH1
ARG
16
1
Y
1
B
NH2
ARG
16
D
NH2
ARG
16
1
Y
1
B
CG
LYS
24
D
CG
LYS
24
1
Y
1
B
CD
LYS
24
D
CD
LYS
24
1
Y
1
B
CE
LYS
24
D
CE
LYS
24
1
Y
1
B
NZ
LYS
24
D
NZ
LYS
24
1
Y
1
B
CG
GLU
27
D
CG
GLU
27
1
Y
1
B
CD
GLU
27
D
CD
GLU
27
1
Y
1
B
OE1
GLU
27
D
OE1
GLU
27
1
Y
1
B
OE2
GLU
27
D
OE2
GLU
27
1
Y
1
B
CG
GLU
28
D
CG
GLU
28
1
Y
1
B
CD
GLU
28
D
CD
GLU
28
1
Y
1
B
OE1
GLU
28
D
OE1
GLU
28
1
Y
1
B
OE2
GLU
28
D
OE2
GLU
28
1
Y
1
D
CG
LYS
2
F
CG
LYS
2
1
Y
1
D
CD
LYS
2
F
CD
LYS
2
1
Y
1
D
CE
LYS
2
F
CE
LYS
2
1
Y
1
D
NZ
LYS
2
F
NZ
LYS
2
1
Y
1
D
CG
MET
42
F
CG
MET
42
1
Y
1
D
SD
MET
42
F
SD
MET
42
1
Y
1
D
CE
MET
42
F
CE
MET
42
1
Y
1
D
CG
LYS
46
F
CG
LYS
46
1
Y
1
D
CD
LYS
46
F
CD
LYS
46
1
Y
1
D
CE
LYS
46
F
CE
LYS
46
1
Y
1
D
NZ
LYS
46
F
NZ
LYS
46
1
Y
1
D
CG
LYS
47
F
CG
LYS
47
1
Y
1
D
CD
LYS
47
F
CD
LYS
47
1
Y
1
D
CE
LYS
47
F
CE
LYS
47
1
Y
1
D
NZ
LYS
47
F
NZ
LYS
47
1
Y
1
D
CG
GLU
48
F
CG
GLU
48
1
Y
1
D
CD
GLU
48
F
CD
GLU
48
1
Y
1
D
OE1
GLU
48
F
OE1
GLU
48
1
Y
1
D
OE2
GLU
48
F
OE2
GLU
48
1
Y
1
D
CG
ARG
50
F
CG
ARG
50
1
Y
1
D
CD
ARG
50
F
CD
ARG
50
1
Y
1
D
NE
ARG
50
F
NE
ARG
50
1
Y
1
D
CZ
ARG
50
F
CZ
ARG
50
1
Y
1
D
NH1
ARG
50
F
NH1
ARG
50
1
Y
1
D
NH2
ARG
50
F
NH2
ARG
50
1
Y
1
A
MET
1
C
MET
1
1
Y
1
A
LYS
2
C
LYS
2
1
Y
1
A
GLY
3
C
GLY
3
1
Y
1
A
MET
4
C
MET
4
1
Y
1
A
SER
5
C
SER
5
1
Y
1
A
LYS
6
C
LYS
6
1
Y
1
A
ALA
53
C
ALA
53
1
Y
1
C
MET
1
E
MET
1
1
Y
1
C
LYS
2
E
LYS
2
1
Y
1
C
GLY
3
E
GLY
3
1
Y
1
C
MET
4
E
MET
4
1
Y
1
C
SER
5
E
SER
5
1
Y
1
C
LYS
6
E
LYS
6
1
Y
1
C
ARG
50
E
ARG
50
1
Y
1
C
ILE
51
E
ILE
51
1
Y
1
C
GLY
52
E
GLY
52
1
Y
1
C
ALA
53
E
ALA
53
1
Y
1
D
ILE
51
F
ILE
51
1
Y
1
D
GLY
52
F
GLY
52
1
Y
1
D
ALA
53
F
ALA
53
1
Y
1
A
PRO
15
-39.76
132.74
1
C
ARG
16
-29.85
-47.36
1
C
GLU
48
-147.57
-49.93
0.3010000
0.2435000
0.2435000
2.8
20
8691
10.0
97.5
RANDOM
1000000.0
0.1
1
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
PDB ENTRY 1PAR
2.8
20
34
2452
0
896
1522
0.009
1.373
19.5
1.46
0.4423000
0.050
0.4519000
20
747
10
10
97.5
2.8
20
1BDV
8691
2
0.0810000
1
2
2.0
97.5
2.5
2.59
62
model building
X-PLOR
refinement
X-PLOR
3.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
ARC FV10 COCRYSTAL
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
A
PRO
15
C
PRO
15
HELX_P
A
GLY
30
C
GLY
30
1
AA
16
A
SER
32
C
SER
32
HELX_P
A
GLU
48
C
GLU
48
1
AB
17
B
PRO
15
D
PRO
15
HELX_P
B
GLY
30
D
GLY
30
1
BA
16
B
SER
32
D
SER
32
HELX_P
B
GLU
48
D
GLU
48
1
BB
17
C
PRO
15
E
PRO
15
HELX_P
C
GLY
30
E
GLY
30
1
CA
16
C
SER
32
E
SER
32
HELX_P
C
GLU
48
E
GLU
48
1
CB
17
D
PRO
15
F
PRO
15
HELX_P
D
GLY
30
F
GLY
30
1
DA
16
D
SER
32
F
SER
32
HELX_P
D
GLU
48
F
GLU
48
1
DB
17
hydrog
WATSON-CRICK
E
DA
2
A
N1
DA
2
1_555
F
DT
22
B
N3
DT
22
1_555
hydrog
WATSON-CRICK
E
DA
2
A
N6
DA
2
1_555
F
DT
22
B
O4
DT
22
1_555
hydrog
WATSON-CRICK
E
DT
3
A
N3
DT
3
1_555
F
DA
21
B
N1
DA
21
1_555
hydrog
WATSON-CRICK
E
DT
3
A
O4
DT
3
1_555
F
DA
21
B
N6
DA
21
1_555
hydrog
WATSON-CRICK
E
DA
4
A
N1
DA
4
1_555
F
DT
20
B
N3
DT
20
1_555
hydrog
WATSON-CRICK
E
DA
4
A
N6
DA
4
1_555
F
DT
20
B
O4
DT
20
1_555
hydrog
WATSON-CRICK
E
DG
5
A
N1
DG
5
1_555
F
DC
19
B
N3
DC
19
1_555
hydrog
WATSON-CRICK
E
DG
5
A
N2
DG
5
1_555
F
DC
19
B
O2
DC
19
1_555
hydrog
WATSON-CRICK
E
DG
5
A
O6
DG
5
1_555
F
DC
19
B
N4
DC
19
1_555
hydrog
WATSON-CRICK
E
DT
6
A
N3
DT
6
1_555
F
DA
18
B
N1
DA
18
1_555
hydrog
WATSON-CRICK
E
DT
6
A
O4
DT
6
1_555
F
DA
18
B
N6
DA
18
1_555
hydrog
WATSON-CRICK
E
DA
7
A
N1
DA
7
1_555
F
DT
17
B
N3
DT
17
1_555
hydrog
WATSON-CRICK
E
DA
7
A
N6
DA
7
1_555
F
DT
17
B
O4
DT
17
1_555
hydrog
WATSON-CRICK
E
DG
8
A
N1
DG
8
1_555
F
DC
16
B
N3
DC
16
1_555
hydrog
WATSON-CRICK
E
DG
8
A
N2
DG
8
1_555
F
DC
16
B
O2
DC
16
1_555
hydrog
WATSON-CRICK
E
DG
8
A
O6
DG
8
1_555
F
DC
16
B
N4
DC
16
1_555
hydrog
WATSON-CRICK
E
DA
9
A
N1
DA
9
1_555
F
DT
15
B
N3
DT
15
1_555
hydrog
WATSON-CRICK
E
DA
9
A
N6
DA
9
1_555
F
DT
15
B
O4
DT
15
1_555
hydrog
WATSON-CRICK
E
DG
10
A
N1
DG
10
1_555
F
DC
14
B
N3
DC
14
1_555
hydrog
WATSON-CRICK
E
DG
10
A
N2
DG
10
1_555
F
DC
14
B
O2
DC
14
1_555
hydrog
WATSON-CRICK
E
DG
10
A
O6
DG
10
1_555
F
DC
14
B
N4
DC
14
1_555
hydrog
WATSON-CRICK
E
DT
11
A
N3
DT
11
1_555
F
DA
13
B
N1
DA
13
1_555
hydrog
WATSON-CRICK
E
DT
11
A
O4
DT
11
1_555
F
DA
13
B
N6
DA
13
1_555
hydrog
WATSON-CRICK
E
DG
12
A
N1
DG
12
1_555
F
DC
12
B
N3
DC
12
1_555
hydrog
WATSON-CRICK
E
DG
12
A
N2
DG
12
1_555
F
DC
12
B
O2
DC
12
1_555
hydrog
WATSON-CRICK
E
DG
12
A
O6
DG
12
1_555
F
DC
12
B
N4
DC
12
1_555
hydrog
WATSON-CRICK
E
DC
13
A
N3
DC
13
1_555
F
DG
11
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
E
DC
13
A
N4
DC
13
1_555
F
DG
11
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
E
DC
13
A
O2
DC
13
1_555
F
DG
11
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
E
DT
14
A
N3
DT
14
1_555
F
DA
10
B
N1
DA
10
1_555
hydrog
WATSON-CRICK
E
DT
14
A
O4
DT
14
1_555
F
DA
10
B
N6
DA
10
1_555
hydrog
WATSON-CRICK
E
DT
15
A
N3
DT
15
1_555
F
DA
9
B
N1
DA
9
1_555
hydrog
WATSON-CRICK
E
DT
15
A
O4
DT
15
1_555
F
DA
9
B
N6
DA
9
1_555
hydrog
WATSON-CRICK
E
DC
16
A
N3
DC
16
1_555
F
DG
8
B
N1
DG
8
1_555
hydrog
WATSON-CRICK
E
DC
16
A
N4
DC
16
1_555
F
DG
8
B
O6
DG
8
1_555
hydrog
WATSON-CRICK
E
DC
16
A
O2
DC
16
1_555
F
DG
8
B
N2
DG
8
1_555
hydrog
WATSON-CRICK
E
DT
17
A
N3
DT
17
1_555
F
DA
7
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
E
DT
17
A
O4
DT
17
1_555
F
DA
7
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
E
DA
18
A
N1
DA
18
1_555
F
DT
6
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
E
DA
18
A
N6
DA
18
1_555
F
DT
6
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
E
DT
19
A
N3
DT
19
1_555
F
DA
5
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
E
DT
19
A
O4
DT
19
1_555
F
DA
5
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
E
DC
20
A
N3
DC
20
1_555
F
DG
4
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
E
DC
20
A
N4
DC
20
1_555
F
DG
4
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
E
DC
20
A
O2
DC
20
1_555
F
DG
4
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
E
DA
21
A
N1
DA
21
1_555
F
DT
3
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
E
DA
21
A
N6
DA
21
1_555
F
DT
3
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
E
DT
22
A
N3
DT
22
1_555
F
DA
2
B
N1
DA
2
1_555
hydrog
WATSON-CRICK
E
DT
22
A
O4
DT
22
1_555
F
DA
2
B
N6
DA
2
1_555
GENE REGULATION/DNA
GENE-REGULATING PROTEIN, GENE REGULATION-DNA COMPLEX
given
-0.511800
0.112700
-0.851700
0.130700
-0.969600
-0.206800
-0.849100
-0.217200
0.481500
63.45470
-8.03550
35.21450
given
0.535600
0.039500
-0.843500
0.042600
-0.998900
-0.019800
-0.843400
-0.025300
-0.536700
58.08270
-4.33970
105.34710
given
0.014600
0.119900
-0.992700
0.100400
-0.987900
-0.117900
-0.994800
-0.098000
-0.026400
70.37200
-5.90280
71.22350
RARC_BPP22
UNP
3
1BDV
PDB
1
1BDV
PDB
2
1
53
1BDV
1
53
P03050
A
1
1
53
1
53
1BDV
1
53
P03050
B
1
1
53
1
53
1BDV
1
53
P03050
C
1
1
53
1
53
1BDV
1
53
P03050
D
1
1
53
1
22
1BDV
1
22
1BDV
E
2
1
22
1
22
1BDV
1
22
1BDV
F
3
1
22
1
PHE
engineered mutation
VAL
10
1BDV
A
P03050
UNP
10
10
2
PHE
engineered mutation
VAL
10
1BDV
B
P03050
UNP
10
10
3
PHE
engineered mutation
VAL
10
1BDV
C
P03050
UNP
10
10
4
PHE
engineered mutation
VAL
10
1BDV
D
P03050
UNP
10
10
2
2
anti-parallel
anti-parallel
A
PRO
8
C
PRO
8
A
TRP
14
C
TRP
14
B
PRO
8
D
PRO
8
B
TRP
14
D
TRP
14
C
PRO
8
E
PRO
8
C
TRP
14
E
TRP
14
D
PRO
8
F
PRO
8
D
TRP
14
F
TRP
14
4
monoclinic
P 1 21 1