0.006757
0.000000
0.004388
0.000000
0.006757
0.000000
0.000000
0.000000
0.011291
0.00000
0.00000
0.00000
Hargreaves, D.
Rice, D.W.
Sedelnikova, S.E.
Artymiuk, P.J.
Lloyd, R.G.
Rafferty, J.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
123.00
90.00
148.000
148.000
105.600
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
S
C
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
N
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
C
N
376
N
S
N
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
N
C
N
418
N
C
N
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
S
C
N
432
N
C
N
433
N
O
N
434
N
C
N
435
N
O
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
N
N
445
S
C
N
446
N
C
N
447
N
O
N
448
R
C
N
449
N
O
N
450
N
C
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
N
N
462
S
C
N
463
N
C
N
464
N
O
N
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
N
472
N
O
N
473
N
O
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
N
N
486
S
C
N
487
N
C
N
488
N
O
N
489
N
C
N
490
N
C
N
491
N
C
N
492
N
O
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
doub
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
doub
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
Y
464
N
doub
Y
465
N
sing
Y
466
N
sing
N
467
N
sing
Y
468
N
doub
N
469
N
sing
Y
470
N
doub
N
471
N
sing
Y
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
doub
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
5
441
446
10.1038/nsb0698-441
9628481
Crystal structure of E.coli RuvA with bound DNA Holliday junction at 6 A resolution.
1998
US
Science
SCIEAS
0038
0036-8075
274
415
Crystal Structure of DNA Recombination Protein Ruva and a Model for its Binding to the Holliday Junction
1996
10.2210/pdb1bdx/pdb
pdb_00001bdx
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
IMAGE PLATE
1997-12-15
MARRESEARCH
SI CRYSTAL
SINGLE WAVELENGTH
M
x-ray
1
0.87
1.0
PX9.6
SRS
0.87
SYNCHROTRON
SRS BEAMLINE PX9.6
4898.191
DNA (5'-D(P*GP*CP*AP*TP*GP*CP*AP*TP*AP*TP*GP*CP*AP*TP*GP*C)-3')
4
syn
polymer
22111.668
HOLLIDAY JUNCTION DNA HELICASE RUVA
4
man
polymer
no
no
(DG)(DC)(DA)(DT)(DG)(DC)(DA)(DT)(DA)(DT)(DG)(DC)(DA)(DT)(DG)(DC)
GCATGCATATGCATGC
J,K,L,M
polydeoxyribonucleotide
no
no
MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNG
VGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAE
QEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL
MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNG
VGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAE
QEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL
A,B,C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia coli
BL21
Escherichia
Escherichia coli
sample
469008
Escherichia coli BL21(DE3)
DE3
RUVA
469008
Escherichia coli BL21(DE3)
BL21
DE3
PAM159
1
4.46
48
MOLECULAR REPLACEMENT PHASES WERE ONLY GOOD ENOUGH TO USE IN LOCATING HEAVY ATOMS BY DIFFERENCE FOURIER AND WERE THEN ABANDONED IN FAVOUR OF MIR PHASES.
VAPOR DIFFUSION, HANGING DROP
6.5
PROTEIN/DNA COMPLEX WAS CRYSTALLISED FROM 0.85M SODIUM ACETATE BUFFERED WITH 100MM IMIDAZOLE AT PH 6.5, VAPOR DIFFUSION, HANGING DROP
SODIUM ACETATE
1
IMIDAZOLE
1
SODIUM ACETATE
2
IMIDAZOLE
2
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Refinement description
1
0
1999-11-24
1
1
2008-05-22
1
2
2011-07-13
1
3
2017-11-22
1
4
2023-08-09
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
P ATOMS ONLY
P ATOMS ONLY
P ATOMS ONLY
P ATOMS ONLY
CA ATOMS ONLY
CA ATOMS ONLY
CA ATOMS ONLY
CA ATOMS ONLY
RCSB
Y
RCSB
1998-05-11
REL
1CUK
PDB
experimental model
G
2
n
1
DG
2
J
C
3
n
2
DC
3
J
A
4
n
3
DA
4
J
T
5
n
4
DT
5
J
G
6
n
5
DG
6
J
C
7
n
6
DC
7
J
A
8
n
7
DA
8
J
T
9
n
8
DT
9
J
A
10
n
9
DA
10
J
T
11
n
10
DT
11
J
G
12
n
11
DG
12
J
C
13
n
12
DC
13
J
A
14
n
13
DA
14
J
T
15
n
14
DT
15
J
G
16
n
15
DG
16
J
C
17
n
16
DC
17
J
G
2
n
1
DG
2
K
C
3
n
2
DC
3
K
A
4
n
3
DA
4
K
T
5
n
4
DT
5
K
G
6
n
5
DG
6
K
C
7
n
6
DC
7
K
A
8
n
7
DA
8
K
T
9
n
8
DT
9
K
A
10
n
9
DA
10
K
T
11
n
10
DT
11
K
G
12
n
11
DG
12
K
C
13
n
12
DC
13
K
A
14
n
13
DA
14
K
T
15
n
14
DT
15
K
G
16
n
15
DG
16
K
C
17
n
16
DC
17
K
G
2
n
1
DG
2
L
C
3
n
2
DC
3
L
A
4
n
3
DA
4
L
T
5
n
4
DT
5
L
G
6
n
5
DG
6
L
C
7
n
6
DC
7
L
A
8
n
7
DA
8
L
T
9
n
8
DT
9
L
A
10
n
9
DA
10
L
T
11
n
10
DT
11
L
G
12
n
11
DG
12
L
C
13
n
12
DC
13
L
A
14
n
13
DA
14
L
T
15
n
14
DT
15
L
G
16
n
15
DG
16
L
C
17
n
16
DC
17
L
G
2
n
1
DG
2
M
C
3
n
2
DC
3
M
A
4
n
3
DA
4
M
T
5
n
4
DT
5
M
G
6
n
5
DG
6
M
C
7
n
6
DC
7
M
A
8
n
7
DA
8
M
T
9
n
8
DT
9
M
A
10
n
9
DA
10
M
T
11
n
10
DT
11
M
G
12
n
11
DG
12
M
C
13
n
12
DC
13
M
A
14
n
13
DA
14
M
T
15
n
14
DT
15
M
G
16
n
15
DG
16
M
C
17
n
16
DC
17
M
MET
1
n
1
MET
1
A
ILE
2
n
2
ILE
2
A
GLY
3
n
3
GLY
3
A
ARG
4
n
4
ARG
4
A
LEU
5
n
5
LEU
5
A
ARG
6
n
6
ARG
6
A
GLY
7
n
7
GLY
7
A
ILE
8
n
8
ILE
8
A
ILE
9
n
9
ILE
9
A
ILE
10
n
10
ILE
10
A
GLU
11
n
11
GLU
11
A
LYS
12
n
12
LYS
12
A
GLN
13
n
13
GLN
13
A
PRO
14
n
14
PRO
14
A
PRO
15
n
15
PRO
15
A
LEU
16
n
16
LEU
16
A
VAL
17
n
17
VAL
17
A
LEU
18
n
18
LEU
18
A
ILE
19
n
19
ILE
19
A
GLU
20
n
20
GLU
20
A
VAL
21
n
21
VAL
21
A
GLY
22
n
22
GLY
22
A
GLY
23
n
23
GLY
23
A
VAL
24
n
24
VAL
24
A
GLY
25
n
25
GLY
25
A
TYR
26
n
26
TYR
26
A
GLU
27
n
27
GLU
27
A
VAL
28
n
28
VAL
28
A
HIS
29
n
29
HIS
29
A
MET
30
n
30
MET
30
A
PRO
31
n
31
PRO
31
A
MET
32
n
32
MET
32
A
THR
33
n
33
THR
33
A
CYS
34
n
34
CYS
34
A
PHE
35
n
35
PHE
35
A
TYR
36
n
36
TYR
36
A
GLU
37
n
37
GLU
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLU
40
n
40
GLU
40
A
ALA
41
n
41
ALA
41
A
GLY
42
n
42
GLY
42
A
GLN
43
n
43
GLN
43
A
GLU
44
n
44
GLU
44
A
ALA
45
n
45
ALA
45
A
ILE
46
n
46
ILE
46
A
VAL
47
n
47
VAL
47
A
PHE
48
n
48
PHE
48
A
THR
49
n
49
THR
49
A
HIS
50
n
50
HIS
50
A
PHE
51
n
51
PHE
51
A
VAL
52
n
52
VAL
52
A
VAL
53
n
53
VAL
53
A
ARG
54
n
54
ARG
54
A
GLU
55
n
55
GLU
55
A
ASP
56
n
56
ASP
56
A
ALA
57
n
57
ALA
57
A
GLN
58
n
58
GLN
58
A
LEU
59
n
59
LEU
59
A
LEU
60
n
60
LEU
60
A
TYR
61
n
61
TYR
61
A
GLY
62
n
62
GLY
62
A
PHE
63
n
63
PHE
63
A
ASN
64
n
64
ASN
64
A
ASN
65
n
65
ASN
65
A
LYS
66
n
66
LYS
66
A
GLN
67
n
67
GLN
67
A
GLU
68
n
68
GLU
68
A
ARG
69
n
69
ARG
69
A
THR
70
n
70
THR
70
A
LEU
71
n
71
LEU
71
A
PHE
72
n
72
PHE
72
A
LYS
73
n
73
LYS
73
A
GLU
74
n
74
GLU
74
A
LEU
75
n
75
LEU
75
A
ILE
76
n
76
ILE
76
A
LYS
77
n
77
LYS
77
A
THR
78
n
78
THR
78
A
ASN
79
n
79
ASN
79
A
GLY
80
n
80
GLY
80
A
VAL
81
n
81
VAL
81
A
GLY
82
n
82
GLY
82
A
PRO
83
n
83
PRO
83
A
LYS
84
n
84
LYS
84
A
LEU
85
n
85
LEU
85
A
ALA
86
n
86
ALA
86
A
LEU
87
n
87
LEU
87
A
ALA
88
n
88
ALA
88
A
ILE
89
n
89
ILE
89
A
LEU
90
n
90
LEU
90
A
SER
91
n
91
SER
91
A
GLY
92
n
92
GLY
92
A
MET
93
n
93
MET
93
A
SER
94
n
94
SER
94
A
ALA
95
n
95
ALA
95
A
GLN
96
n
96
GLN
96
A
GLN
97
n
97
GLN
97
A
PHE
98
n
98
PHE
98
A
VAL
99
n
99
VAL
99
A
ASN
100
n
100
ASN
100
A
ALA
101
n
101
ALA
101
A
VAL
102
n
102
VAL
102
A
GLU
103
n
103
GLU
103
A
ARG
104
n
104
ARG
104
A
GLU
105
n
105
GLU
105
A
GLU
106
n
106
GLU
106
A
VAL
107
n
107
VAL
107
A
GLY
108
n
108
GLY
108
A
ALA
109
n
109
ALA
109
A
LEU
110
n
110
LEU
110
A
VAL
111
n
111
VAL
111
A
LYS
112
n
112
LYS
112
A
LEU
113
n
113
LEU
113
A
PRO
114
n
114
PRO
114
A
GLY
115
n
115
GLY
115
A
ILE
116
n
116
ILE
116
A
GLY
117
n
117
GLY
117
A
LYS
118
n
118
LYS
118
A
LYS
119
n
119
LYS
119
A
THR
120
n
120
THR
120
A
ALA
121
n
121
ALA
121
A
GLU
122
n
122
GLU
122
A
ARG
123
n
123
ARG
123
A
LEU
124
n
124
LEU
124
A
ILE
125
n
125
ILE
125
A
VAL
126
n
126
VAL
126
A
GLU
127
n
127
GLU
127
A
MET
128
n
128
MET
128
A
LYS
129
n
129
LYS
129
A
ASP
130
n
130
ASP
130
A
ARG
131
n
131
ARG
131
A
PHE
132
n
132
PHE
132
A
LYS
133
n
133
LYS
133
A
GLY
134
n
134
GLY
134
A
LEU
135
n
135
LEU
135
A
HIS
136
n
136
HIS
136
A
GLY
137
n
137
GLY
137
A
ASP
138
n
138
ASP
138
A
LEU
139
n
139
LEU
139
A
PHE
140
n
140
PHE
140
A
THR
141
n
141
THR
141
A
PRO
142
n
142
PRO
142
A
n
143
143
A
n
144
144
A
n
145
145
A
n
146
146
A
n
147
147
A
n
148
148
A
n
149
149
A
n
150
150
A
n
151
151
A
n
152
152
A
n
153
153
A
n
154
154
A
n
155
155
A
THR
156
n
156
THR
156
A
ASP
157
n
157
ASP
157
A
ASP
158
n
158
ASP
158
A
ALA
159
n
159
ALA
159
A
GLU
160
n
160
GLU
160
A
GLN
161
n
161
GLN
161
A
GLU
162
n
162
GLU
162
A
ALA
163
n
163
ALA
163
A
VAL
164
n
164
VAL
164
A
ALA
165
n
165
ALA
165
A
ALA
166
n
166
ALA
166
A
LEU
167
n
167
LEU
167
A
VAL
168
n
168
VAL
168
A
ALA
169
n
169
ALA
169
A
LEU
170
n
170
LEU
170
A
GLY
171
n
171
GLY
171
A
TYR
172
n
172
TYR
172
A
LYS
173
n
173
LYS
173
A
PRO
174
n
174
PRO
174
A
GLN
175
n
175
GLN
175
A
GLU
176
n
176
GLU
176
A
ALA
177
n
177
ALA
177
A
SER
178
n
178
SER
178
A
ARG
179
n
179
ARG
179
A
MET
180
n
180
MET
180
A
VAL
181
n
181
VAL
181
A
SER
182
n
182
SER
182
A
LYS
183
n
183
LYS
183
A
ILE
184
n
184
ILE
184
A
ALA
185
n
185
ALA
185
A
ARG
186
n
186
ARG
186
A
PRO
187
n
187
PRO
187
A
ASP
188
n
188
ASP
188
A
ALA
189
n
189
ALA
189
A
SER
190
n
190
SER
190
A
SER
191
n
191
SER
191
A
GLU
192
n
192
GLU
192
A
THR
193
n
193
THR
193
A
LEU
194
n
194
LEU
194
A
ILE
195
n
195
ILE
195
A
ARG
196
n
196
ARG
196
A
GLU
197
n
197
GLU
197
A
ALA
198
n
198
ALA
198
A
LEU
199
n
199
LEU
199
A
ARG
200
n
200
ARG
200
A
ALA
201
n
201
ALA
201
A
ALA
202
n
202
ALA
202
A
LEU
203
n
203
LEU
203
A
MET
1
n
1
MET
1
B
ILE
2
n
2
ILE
2
B
GLY
3
n
3
GLY
3
B
ARG
4
n
4
ARG
4
B
LEU
5
n
5
LEU
5
B
ARG
6
n
6
ARG
6
B
GLY
7
n
7
GLY
7
B
ILE
8
n
8
ILE
8
B
ILE
9
n
9
ILE
9
B
ILE
10
n
10
ILE
10
B
GLU
11
n
11
GLU
11
B
LYS
12
n
12
LYS
12
B
GLN
13
n
13
GLN
13
B
PRO
14
n
14
PRO
14
B
PRO
15
n
15
PRO
15
B
LEU
16
n
16
LEU
16
B
VAL
17
n
17
VAL
17
B
LEU
18
n
18
LEU
18
B
ILE
19
n
19
ILE
19
B
GLU
20
n
20
GLU
20
B
VAL
21
n
21
VAL
21
B
GLY
22
n
22
GLY
22
B
GLY
23
n
23
GLY
23
B
VAL
24
n
24
VAL
24
B
GLY
25
n
25
GLY
25
B
TYR
26
n
26
TYR
26
B
GLU
27
n
27
GLU
27
B
VAL
28
n
28
VAL
28
B
HIS
29
n
29
HIS
29
B
MET
30
n
30
MET
30
B
PRO
31
n
31
PRO
31
B
MET
32
n
32
MET
32
B
THR
33
n
33
THR
33
B
CYS
34
n
34
CYS
34
B
PHE
35
n
35
PHE
35
B
TYR
36
n
36
TYR
36
B
GLU
37
n
37
GLU
37
B
LEU
38
n
38
LEU
38
B
PRO
39
n
39
PRO
39
B
GLU
40
n
40
GLU
40
B
ALA
41
n
41
ALA
41
B
GLY
42
n
42
GLY
42
B
GLN
43
n
43
GLN
43
B
GLU
44
n
44
GLU
44
B
ALA
45
n
45
ALA
45
B
ILE
46
n
46
ILE
46
B
VAL
47
n
47
VAL
47
B
PHE
48
n
48
PHE
48
B
THR
49
n
49
THR
49
B
HIS
50
n
50
HIS
50
B
PHE
51
n
51
PHE
51
B
VAL
52
n
52
VAL
52
B
VAL
53
n
53
VAL
53
B
ARG
54
n
54
ARG
54
B
GLU
55
n
55
GLU
55
B
ASP
56
n
56
ASP
56
B
ALA
57
n
57
ALA
57
B
GLN
58
n
58
GLN
58
B
LEU
59
n
59
LEU
59
B
LEU
60
n
60
LEU
60
B
TYR
61
n
61
TYR
61
B
GLY
62
n
62
GLY
62
B
PHE
63
n
63
PHE
63
B
ASN
64
n
64
ASN
64
B
ASN
65
n
65
ASN
65
B
LYS
66
n
66
LYS
66
B
GLN
67
n
67
GLN
67
B
GLU
68
n
68
GLU
68
B
ARG
69
n
69
ARG
69
B
THR
70
n
70
THR
70
B
LEU
71
n
71
LEU
71
B
PHE
72
n
72
PHE
72
B
LYS
73
n
73
LYS
73
B
GLU
74
n
74
GLU
74
B
LEU
75
n
75
LEU
75
B
ILE
76
n
76
ILE
76
B
LYS
77
n
77
LYS
77
B
THR
78
n
78
THR
78
B
ASN
79
n
79
ASN
79
B
GLY
80
n
80
GLY
80
B
VAL
81
n
81
VAL
81
B
GLY
82
n
82
GLY
82
B
PRO
83
n
83
PRO
83
B
LYS
84
n
84
LYS
84
B
LEU
85
n
85
LEU
85
B
ALA
86
n
86
ALA
86
B
LEU
87
n
87
LEU
87
B
ALA
88
n
88
ALA
88
B
ILE
89
n
89
ILE
89
B
LEU
90
n
90
LEU
90
B
SER
91
n
91
SER
91
B
GLY
92
n
92
GLY
92
B
MET
93
n
93
MET
93
B
SER
94
n
94
SER
94
B
ALA
95
n
95
ALA
95
B
GLN
96
n
96
GLN
96
B
GLN
97
n
97
GLN
97
B
PHE
98
n
98
PHE
98
B
VAL
99
n
99
VAL
99
B
ASN
100
n
100
ASN
100
B
ALA
101
n
101
ALA
101
B
VAL
102
n
102
VAL
102
B
GLU
103
n
103
GLU
103
B
ARG
104
n
104
ARG
104
B
GLU
105
n
105
GLU
105
B
GLU
106
n
106
GLU
106
B
VAL
107
n
107
VAL
107
B
GLY
108
n
108
GLY
108
B
ALA
109
n
109
ALA
109
B
LEU
110
n
110
LEU
110
B
VAL
111
n
111
VAL
111
B
LYS
112
n
112
LYS
112
B
LEU
113
n
113
LEU
113
B
PRO
114
n
114
PRO
114
B
GLY
115
n
115
GLY
115
B
ILE
116
n
116
ILE
116
B
GLY
117
n
117
GLY
117
B
LYS
118
n
118
LYS
118
B
LYS
119
n
119
LYS
119
B
THR
120
n
120
THR
120
B
ALA
121
n
121
ALA
121
B
GLU
122
n
122
GLU
122
B
ARG
123
n
123
ARG
123
B
LEU
124
n
124
LEU
124
B
ILE
125
n
125
ILE
125
B
VAL
126
n
126
VAL
126
B
GLU
127
n
127
GLU
127
B
MET
128
n
128
MET
128
B
LYS
129
n
129
LYS
129
B
ASP
130
n
130
ASP
130
B
ARG
131
n
131
ARG
131
B
PHE
132
n
132
PHE
132
B
LYS
133
n
133
LYS
133
B
GLY
134
n
134
GLY
134
B
LEU
135
n
135
LEU
135
B
HIS
136
n
136
HIS
136
B
GLY
137
n
137
GLY
137
B
ASP
138
n
138
ASP
138
B
LEU
139
n
139
LEU
139
B
PHE
140
n
140
PHE
140
B
THR
141
n
141
THR
141
B
PRO
142
n
142
PRO
142
B
n
143
143
B
n
144
144
B
n
145
145
B
n
146
146
B
n
147
147
B
n
148
148
B
n
149
149
B
n
150
150
B
n
151
151
B
n
152
152
B
n
153
153
B
n
154
154
B
n
155
155
B
THR
156
n
156
THR
156
B
ASP
157
n
157
ASP
157
B
ASP
158
n
158
ASP
158
B
ALA
159
n
159
ALA
159
B
GLU
160
n
160
GLU
160
B
GLN
161
n
161
GLN
161
B
GLU
162
n
162
GLU
162
B
ALA
163
n
163
ALA
163
B
VAL
164
n
164
VAL
164
B
ALA
165
n
165
ALA
165
B
ALA
166
n
166
ALA
166
B
LEU
167
n
167
LEU
167
B
VAL
168
n
168
VAL
168
B
ALA
169
n
169
ALA
169
B
LEU
170
n
170
LEU
170
B
GLY
171
n
171
GLY
171
B
TYR
172
n
172
TYR
172
B
LYS
173
n
173
LYS
173
B
PRO
174
n
174
PRO
174
B
GLN
175
n
175
GLN
175
B
GLU
176
n
176
GLU
176
B
ALA
177
n
177
ALA
177
B
SER
178
n
178
SER
178
B
ARG
179
n
179
ARG
179
B
MET
180
n
180
MET
180
B
VAL
181
n
181
VAL
181
B
SER
182
n
182
SER
182
B
LYS
183
n
183
LYS
183
B
ILE
184
n
184
ILE
184
B
ALA
185
n
185
ALA
185
B
ARG
186
n
186
ARG
186
B
PRO
187
n
187
PRO
187
B
ASP
188
n
188
ASP
188
B
ALA
189
n
189
ALA
189
B
SER
190
n
190
SER
190
B
SER
191
n
191
SER
191
B
GLU
192
n
192
GLU
192
B
THR
193
n
193
THR
193
B
LEU
194
n
194
LEU
194
B
ILE
195
n
195
ILE
195
B
ARG
196
n
196
ARG
196
B
GLU
197
n
197
GLU
197
B
ALA
198
n
198
ALA
198
B
LEU
199
n
199
LEU
199
B
ARG
200
n
200
ARG
200
B
ALA
201
n
201
ALA
201
B
ALA
202
n
202
ALA
202
B
LEU
203
n
203
LEU
203
B
MET
1
n
1
MET
1
C
ILE
2
n
2
ILE
2
C
GLY
3
n
3
GLY
3
C
ARG
4
n
4
ARG
4
C
LEU
5
n
5
LEU
5
C
ARG
6
n
6
ARG
6
C
GLY
7
n
7
GLY
7
C
ILE
8
n
8
ILE
8
C
ILE
9
n
9
ILE
9
C
ILE
10
n
10
ILE
10
C
GLU
11
n
11
GLU
11
C
LYS
12
n
12
LYS
12
C
GLN
13
n
13
GLN
13
C
PRO
14
n
14
PRO
14
C
PRO
15
n
15
PRO
15
C
LEU
16
n
16
LEU
16
C
VAL
17
n
17
VAL
17
C
LEU
18
n
18
LEU
18
C
ILE
19
n
19
ILE
19
C
GLU
20
n
20
GLU
20
C
VAL
21
n
21
VAL
21
C
GLY
22
n
22
GLY
22
C
GLY
23
n
23
GLY
23
C
VAL
24
n
24
VAL
24
C
GLY
25
n
25
GLY
25
C
TYR
26
n
26
TYR
26
C
GLU
27
n
27
GLU
27
C
VAL
28
n
28
VAL
28
C
HIS
29
n
29
HIS
29
C
MET
30
n
30
MET
30
C
PRO
31
n
31
PRO
31
C
MET
32
n
32
MET
32
C
THR
33
n
33
THR
33
C
CYS
34
n
34
CYS
34
C
PHE
35
n
35
PHE
35
C
TYR
36
n
36
TYR
36
C
GLU
37
n
37
GLU
37
C
LEU
38
n
38
LEU
38
C
PRO
39
n
39
PRO
39
C
GLU
40
n
40
GLU
40
C
ALA
41
n
41
ALA
41
C
GLY
42
n
42
GLY
42
C
GLN
43
n
43
GLN
43
C
GLU
44
n
44
GLU
44
C
ALA
45
n
45
ALA
45
C
ILE
46
n
46
ILE
46
C
VAL
47
n
47
VAL
47
C
PHE
48
n
48
PHE
48
C
THR
49
n
49
THR
49
C
HIS
50
n
50
HIS
50
C
PHE
51
n
51
PHE
51
C
VAL
52
n
52
VAL
52
C
VAL
53
n
53
VAL
53
C
ARG
54
n
54
ARG
54
C
GLU
55
n
55
GLU
55
C
ASP
56
n
56
ASP
56
C
ALA
57
n
57
ALA
57
C
GLN
58
n
58
GLN
58
C
LEU
59
n
59
LEU
59
C
LEU
60
n
60
LEU
60
C
TYR
61
n
61
TYR
61
C
GLY
62
n
62
GLY
62
C
PHE
63
n
63
PHE
63
C
ASN
64
n
64
ASN
64
C
ASN
65
n
65
ASN
65
C
LYS
66
n
66
LYS
66
C
GLN
67
n
67
GLN
67
C
GLU
68
n
68
GLU
68
C
ARG
69
n
69
ARG
69
C
THR
70
n
70
THR
70
C
LEU
71
n
71
LEU
71
C
PHE
72
n
72
PHE
72
C
LYS
73
n
73
LYS
73
C
GLU
74
n
74
GLU
74
C
LEU
75
n
75
LEU
75
C
ILE
76
n
76
ILE
76
C
LYS
77
n
77
LYS
77
C
THR
78
n
78
THR
78
C
ASN
79
n
79
ASN
79
C
GLY
80
n
80
GLY
80
C
VAL
81
n
81
VAL
81
C
GLY
82
n
82
GLY
82
C
PRO
83
n
83
PRO
83
C
LYS
84
n
84
LYS
84
C
LEU
85
n
85
LEU
85
C
ALA
86
n
86
ALA
86
C
LEU
87
n
87
LEU
87
C
ALA
88
n
88
ALA
88
C
ILE
89
n
89
ILE
89
C
LEU
90
n
90
LEU
90
C
SER
91
n
91
SER
91
C
GLY
92
n
92
GLY
92
C
MET
93
n
93
MET
93
C
SER
94
n
94
SER
94
C
ALA
95
n
95
ALA
95
C
GLN
96
n
96
GLN
96
C
GLN
97
n
97
GLN
97
C
PHE
98
n
98
PHE
98
C
VAL
99
n
99
VAL
99
C
ASN
100
n
100
ASN
100
C
ALA
101
n
101
ALA
101
C
VAL
102
n
102
VAL
102
C
GLU
103
n
103
GLU
103
C
ARG
104
n
104
ARG
104
C
GLU
105
n
105
GLU
105
C
GLU
106
n
106
GLU
106
C
VAL
107
n
107
VAL
107
C
GLY
108
n
108
GLY
108
C
ALA
109
n
109
ALA
109
C
LEU
110
n
110
LEU
110
C
VAL
111
n
111
VAL
111
C
LYS
112
n
112
LYS
112
C
LEU
113
n
113
LEU
113
C
PRO
114
n
114
PRO
114
C
GLY
115
n
115
GLY
115
C
ILE
116
n
116
ILE
116
C
GLY
117
n
117
GLY
117
C
LYS
118
n
118
LYS
118
C
LYS
119
n
119
LYS
119
C
THR
120
n
120
THR
120
C
ALA
121
n
121
ALA
121
C
GLU
122
n
122
GLU
122
C
ARG
123
n
123
ARG
123
C
LEU
124
n
124
LEU
124
C
ILE
125
n
125
ILE
125
C
VAL
126
n
126
VAL
126
C
GLU
127
n
127
GLU
127
C
MET
128
n
128
MET
128
C
LYS
129
n
129
LYS
129
C
ASP
130
n
130
ASP
130
C
ARG
131
n
131
ARG
131
C
PHE
132
n
132
PHE
132
C
LYS
133
n
133
LYS
133
C
GLY
134
n
134
GLY
134
C
LEU
135
n
135
LEU
135
C
HIS
136
n
136
HIS
136
C
GLY
137
n
137
GLY
137
C
ASP
138
n
138
ASP
138
C
LEU
139
n
139
LEU
139
C
PHE
140
n
140
PHE
140
C
THR
141
n
141
THR
141
C
PRO
142
n
142
PRO
142
C
n
143
143
C
n
144
144
C
n
145
145
C
n
146
146
C
n
147
147
C
n
148
148
C
n
149
149
C
n
150
150
C
n
151
151
C
n
152
152
C
n
153
153
C
n
154
154
C
n
155
155
C
THR
156
n
156
THR
156
C
ASP
157
n
157
ASP
157
C
ASP
158
n
158
ASP
158
C
ALA
159
n
159
ALA
159
C
GLU
160
n
160
GLU
160
C
GLN
161
n
161
GLN
161
C
GLU
162
n
162
GLU
162
C
ALA
163
n
163
ALA
163
C
VAL
164
n
164
VAL
164
C
ALA
165
n
165
ALA
165
C
ALA
166
n
166
ALA
166
C
LEU
167
n
167
LEU
167
C
VAL
168
n
168
VAL
168
C
ALA
169
n
169
ALA
169
C
LEU
170
n
170
LEU
170
C
GLY
171
n
171
GLY
171
C
TYR
172
n
172
TYR
172
C
LYS
173
n
173
LYS
173
C
PRO
174
n
174
PRO
174
C
GLN
175
n
175
GLN
175
C
GLU
176
n
176
GLU
176
C
ALA
177
n
177
ALA
177
C
SER
178
n
178
SER
178
C
ARG
179
n
179
ARG
179
C
MET
180
n
180
MET
180
C
VAL
181
n
181
VAL
181
C
SER
182
n
182
SER
182
C
LYS
183
n
183
LYS
183
C
ILE
184
n
184
ILE
184
C
ALA
185
n
185
ALA
185
C
ARG
186
n
186
ARG
186
C
PRO
187
n
187
PRO
187
C
ASP
188
n
188
ASP
188
C
ALA
189
n
189
ALA
189
C
SER
190
n
190
SER
190
C
SER
191
n
191
SER
191
C
GLU
192
n
192
GLU
192
C
THR
193
n
193
THR
193
C
LEU
194
n
194
LEU
194
C
ILE
195
n
195
ILE
195
C
ARG
196
n
196
ARG
196
C
GLU
197
n
197
GLU
197
C
ALA
198
n
198
ALA
198
C
LEU
199
n
199
LEU
199
C
ARG
200
n
200
ARG
200
C
ALA
201
n
201
ALA
201
C
ALA
202
n
202
ALA
202
C
LEU
203
n
203
LEU
203
C
MET
1
n
1
MET
1
D
ILE
2
n
2
ILE
2
D
GLY
3
n
3
GLY
3
D
ARG
4
n
4
ARG
4
D
LEU
5
n
5
LEU
5
D
ARG
6
n
6
ARG
6
D
GLY
7
n
7
GLY
7
D
ILE
8
n
8
ILE
8
D
ILE
9
n
9
ILE
9
D
ILE
10
n
10
ILE
10
D
GLU
11
n
11
GLU
11
D
LYS
12
n
12
LYS
12
D
GLN
13
n
13
GLN
13
D
PRO
14
n
14
PRO
14
D
PRO
15
n
15
PRO
15
D
LEU
16
n
16
LEU
16
D
VAL
17
n
17
VAL
17
D
LEU
18
n
18
LEU
18
D
ILE
19
n
19
ILE
19
D
GLU
20
n
20
GLU
20
D
VAL
21
n
21
VAL
21
D
GLY
22
n
22
GLY
22
D
GLY
23
n
23
GLY
23
D
VAL
24
n
24
VAL
24
D
GLY
25
n
25
GLY
25
D
TYR
26
n
26
TYR
26
D
GLU
27
n
27
GLU
27
D
VAL
28
n
28
VAL
28
D
HIS
29
n
29
HIS
29
D
MET
30
n
30
MET
30
D
PRO
31
n
31
PRO
31
D
MET
32
n
32
MET
32
D
THR
33
n
33
THR
33
D
CYS
34
n
34
CYS
34
D
PHE
35
n
35
PHE
35
D
TYR
36
n
36
TYR
36
D
GLU
37
n
37
GLU
37
D
LEU
38
n
38
LEU
38
D
PRO
39
n
39
PRO
39
D
GLU
40
n
40
GLU
40
D
ALA
41
n
41
ALA
41
D
GLY
42
n
42
GLY
42
D
GLN
43
n
43
GLN
43
D
GLU
44
n
44
GLU
44
D
ALA
45
n
45
ALA
45
D
ILE
46
n
46
ILE
46
D
VAL
47
n
47
VAL
47
D
PHE
48
n
48
PHE
48
D
THR
49
n
49
THR
49
D
HIS
50
n
50
HIS
50
D
PHE
51
n
51
PHE
51
D
VAL
52
n
52
VAL
52
D
VAL
53
n
53
VAL
53
D
ARG
54
n
54
ARG
54
D
GLU
55
n
55
GLU
55
D
ASP
56
n
56
ASP
56
D
ALA
57
n
57
ALA
57
D
GLN
58
n
58
GLN
58
D
LEU
59
n
59
LEU
59
D
LEU
60
n
60
LEU
60
D
TYR
61
n
61
TYR
61
D
GLY
62
n
62
GLY
62
D
PHE
63
n
63
PHE
63
D
ASN
64
n
64
ASN
64
D
ASN
65
n
65
ASN
65
D
LYS
66
n
66
LYS
66
D
GLN
67
n
67
GLN
67
D
GLU
68
n
68
GLU
68
D
ARG
69
n
69
ARG
69
D
THR
70
n
70
THR
70
D
LEU
71
n
71
LEU
71
D
PHE
72
n
72
PHE
72
D
LYS
73
n
73
LYS
73
D
GLU
74
n
74
GLU
74
D
LEU
75
n
75
LEU
75
D
ILE
76
n
76
ILE
76
D
LYS
77
n
77
LYS
77
D
THR
78
n
78
THR
78
D
ASN
79
n
79
ASN
79
D
GLY
80
n
80
GLY
80
D
VAL
81
n
81
VAL
81
D
GLY
82
n
82
GLY
82
D
PRO
83
n
83
PRO
83
D
LYS
84
n
84
LYS
84
D
LEU
85
n
85
LEU
85
D
ALA
86
n
86
ALA
86
D
LEU
87
n
87
LEU
87
D
ALA
88
n
88
ALA
88
D
ILE
89
n
89
ILE
89
D
LEU
90
n
90
LEU
90
D
SER
91
n
91
SER
91
D
GLY
92
n
92
GLY
92
D
MET
93
n
93
MET
93
D
SER
94
n
94
SER
94
D
ALA
95
n
95
ALA
95
D
GLN
96
n
96
GLN
96
D
GLN
97
n
97
GLN
97
D
PHE
98
n
98
PHE
98
D
VAL
99
n
99
VAL
99
D
ASN
100
n
100
ASN
100
D
ALA
101
n
101
ALA
101
D
VAL
102
n
102
VAL
102
D
GLU
103
n
103
GLU
103
D
ARG
104
n
104
ARG
104
D
GLU
105
n
105
GLU
105
D
GLU
106
n
106
GLU
106
D
VAL
107
n
107
VAL
107
D
GLY
108
n
108
GLY
108
D
ALA
109
n
109
ALA
109
D
LEU
110
n
110
LEU
110
D
VAL
111
n
111
VAL
111
D
LYS
112
n
112
LYS
112
D
LEU
113
n
113
LEU
113
D
PRO
114
n
114
PRO
114
D
GLY
115
n
115
GLY
115
D
ILE
116
n
116
ILE
116
D
GLY
117
n
117
GLY
117
D
LYS
118
n
118
LYS
118
D
LYS
119
n
119
LYS
119
D
THR
120
n
120
THR
120
D
ALA
121
n
121
ALA
121
D
GLU
122
n
122
GLU
122
D
ARG
123
n
123
ARG
123
D
LEU
124
n
124
LEU
124
D
ILE
125
n
125
ILE
125
D
VAL
126
n
126
VAL
126
D
GLU
127
n
127
GLU
127
D
MET
128
n
128
MET
128
D
LYS
129
n
129
LYS
129
D
ASP
130
n
130
ASP
130
D
ARG
131
n
131
ARG
131
D
PHE
132
n
132
PHE
132
D
LYS
133
n
133
LYS
133
D
GLY
134
n
134
GLY
134
D
LEU
135
n
135
LEU
135
D
HIS
136
n
136
HIS
136
D
GLY
137
n
137
GLY
137
D
ASP
138
n
138
ASP
138
D
LEU
139
n
139
LEU
139
D
PHE
140
n
140
PHE
140
D
THR
141
n
141
THR
141
D
PRO
142
n
142
PRO
142
D
n
143
143
D
n
144
144
D
n
145
145
D
n
146
146
D
n
147
147
D
n
148
148
D
n
149
149
D
n
150
150
D
n
151
151
D
n
152
152
D
n
153
153
D
n
154
154
D
n
155
155
D
THR
156
n
156
THR
156
D
ASP
157
n
157
ASP
157
D
ASP
158
n
158
ASP
158
D
ALA
159
n
159
ALA
159
D
GLU
160
n
160
GLU
160
D
GLN
161
n
161
GLN
161
D
GLU
162
n
162
GLU
162
D
ALA
163
n
163
ALA
163
D
VAL
164
n
164
VAL
164
D
ALA
165
n
165
ALA
165
D
ALA
166
n
166
ALA
166
D
LEU
167
n
167
LEU
167
D
VAL
168
n
168
VAL
168
D
ALA
169
n
169
ALA
169
D
LEU
170
n
170
LEU
170
D
GLY
171
n
171
GLY
171
D
TYR
172
n
172
TYR
172
D
LYS
173
n
173
LYS
173
D
PRO
174
n
174
PRO
174
D
GLN
175
n
175
GLN
175
D
GLU
176
n
176
GLU
176
D
ALA
177
n
177
ALA
177
D
SER
178
n
178
SER
178
D
ARG
179
n
179
ARG
179
D
MET
180
n
180
MET
180
D
VAL
181
n
181
VAL
181
D
SER
182
n
182
SER
182
D
LYS
183
n
183
LYS
183
D
ILE
184
n
184
ILE
184
D
ALA
185
n
185
ALA
185
D
ARG
186
n
186
ARG
186
D
PRO
187
n
187
PRO
187
D
ASP
188
n
188
ASP
188
D
ALA
189
n
189
ALA
189
D
SER
190
n
190
SER
190
D
SER
191
n
191
SER
191
D
GLU
192
n
192
GLU
192
D
THR
193
n
193
THR
193
D
LEU
194
n
194
LEU
194
D
ILE
195
n
195
ILE
195
D
ARG
196
n
196
ARG
196
D
GLU
197
n
197
GLU
197
D
ALA
198
n
198
ALA
198
D
LEU
199
n
199
LEU
199
D
ARG
200
n
200
ARG
200
D
ALA
201
n
201
ALA
201
D
ALA
202
n
202
ALA
202
D
LEU
203
n
203
LEU
203
D
author_defined_assembly
8
octameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ALA
143
E
ALA
143
1
Y
1
A
ALA
144
E
ALA
144
1
Y
1
A
ASP
145
E
ASP
145
1
Y
1
A
LEU
146
E
LEU
146
1
Y
1
A
VAL
147
E
VAL
147
1
Y
1
A
LEU
148
E
LEU
148
1
Y
1
A
THR
149
E
THR
149
1
Y
1
A
SER
150
E
SER
150
1
Y
1
A
PRO
151
E
PRO
151
1
Y
1
A
ALA
152
E
ALA
152
1
Y
1
A
SER
153
E
SER
153
1
Y
1
A
PRO
154
E
PRO
154
1
Y
1
A
ALA
155
E
ALA
155
1
Y
1
B
ALA
143
F
ALA
143
1
Y
1
B
ALA
144
F
ALA
144
1
Y
1
B
ASP
145
F
ASP
145
1
Y
1
B
LEU
146
F
LEU
146
1
Y
1
B
VAL
147
F
VAL
147
1
Y
1
B
LEU
148
F
LEU
148
1
Y
1
B
THR
149
F
THR
149
1
Y
1
B
SER
150
F
SER
150
1
Y
1
B
PRO
151
F
PRO
151
1
Y
1
B
ALA
152
F
ALA
152
1
Y
1
B
SER
153
F
SER
153
1
Y
1
B
PRO
154
F
PRO
154
1
Y
1
B
ALA
155
F
ALA
155
1
Y
1
C
ALA
143
G
ALA
143
1
Y
1
C
ALA
144
G
ALA
144
1
Y
1
C
ASP
145
G
ASP
145
1
Y
1
C
LEU
146
G
LEU
146
1
Y
1
C
VAL
147
G
VAL
147
1
Y
1
C
LEU
148
G
LEU
148
1
Y
1
C
THR
149
G
THR
149
1
Y
1
C
SER
150
G
SER
150
1
Y
1
C
PRO
151
G
PRO
151
1
Y
1
C
ALA
152
G
ALA
152
1
Y
1
C
SER
153
G
SER
153
1
Y
1
C
PRO
154
G
PRO
154
1
Y
1
C
ALA
155
G
ALA
155
1
Y
1
D
ALA
143
H
ALA
143
1
Y
1
D
ALA
144
H
ALA
144
1
Y
1
D
ASP
145
H
ASP
145
1
Y
1
D
LEU
146
H
LEU
146
1
Y
1
D
VAL
147
H
VAL
147
1
Y
1
D
LEU
148
H
LEU
148
1
Y
1
D
THR
149
H
THR
149
1
Y
1
D
SER
150
H
SER
150
1
Y
1
D
PRO
151
H
PRO
151
1
Y
1
D
ALA
152
H
ALA
152
1
Y
1
D
SER
153
H
SER
153
1
Y
1
D
PRO
154
H
PRO
154
1
Y
1
D
ALA
155
H
ALA
155
1
Y
OWING TO THE LOW RESOLUTION OF THE DATA, NO POSITIONAL REFINEMENT OF THE PROTEIN RESIDUES OR DNA WAS PERFORMED
6.0
1
MOLECULAR REPLACEMENT, MIR
1CUK
6.0
0
824
0
64
760
5.7
17.6
1BDX
5263
2
0.0430000
0.0430000
1
6.8
2.1
94
0.2240000
5.70
6.01
3.3
0.2240000
1
2.1
94.2
model building
CCP4
phasing
MLPHARE
model building
O
data reduction
DENZO
data scaling
CCP4
(AGROVATA
data scaling
ROTAVATA
phasing
CCP4
phasing
TFFC
E. COLI DNA HELICASE RUVA WITH BOUND DNA HOLLIDAY JUNCTION, ALPHA CARBONS AND PHOSPHATE ATOMS ONLY
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
TRANSFERASE/DNA
DNA-BINDING, BRANCH MIGRATION, HOLLIDAY JUNCTION, RUV, COMPLEX DNA-BINDING PROTEIN-DNA, TRANSFERASE-DNA COMPLEX
given
-0.999990
0.000340
0.005180
0.000340
-0.991490
0.130180
0.005180
0.130180
0.991480
73.71131
-3.18269
0.01618
given
0.000010
-0.997700
0.067820
0.998040
0.004250
0.062490
-0.062640
0.067690
0.995740
35.26724
-38.36830
2.41632
given
0.000010
0.998040
-0.062640
-0.997700
0.004260
0.067690
0.067820
0.062500
0.995740
38.44391
35.18567
-2.40027
RUVA_ECOLI
UNP
2
P0A809
1BDX
PDB
1
1BDX
1
203
1BDX
1
203
P0A809
A
1
1
203
1
203
1BDX
1
203
P0A809
B
1
1
203
1
203
1BDX
1
203
P0A809
C
1
1
203
1
203
1BDX
1
203
P0A809
D
1
1
203
2
17
1BDX
2
17
1BDX
J
2
1
16
2
17
1BDX
2
17
1BDX
K
2
1
16
2
17
1BDX
2
17
1BDX
L
2
1
16
2
17
1BDX
2
17
1BDX
M
2
1
16
5
monoclinic
C 1 2 1