0.021786
0.000000
0.000000
0.000000
0.022321
0.000000
0.000000
0.000000
0.018904
0.00000
0.00000
0.00000
Dung, M.H.
Bell, J.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
45.900
44.800
52.900
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C H4 O
32.042
METHANOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
53
419
425
10.1107/S0907444997000929
15299907
Structure of crystal form IX of bovine pancreatic ribonuclease A.
1997
10.2210/pdb1bel/pdb
pdb_00001bel
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
292.0
1
IMAGE PLATE
1992-08-28
RIGAKU RAXIS II
M
x-ray
1
1.5418
1.0
1.5418
PH 4.5
13708.326
RIBONUCLEASE A
3.1.27.5
1
nat
polymer
96.063
SULFATE ION
2
syn
non-polymer
32.042
METHANOL
4
syn
non-polymer
18.015
water
82
nat
water
no
no
KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMS
ITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV
KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMS
ITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
cattle
Bos
sample
9913
PANCREAS
Bos taurus
4
1.95
30.0
4.50
60% METHANOL, pH 4.50
database_2
pdbx_initial_refinement_model
software
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Refinement description
1
0
1996-10-14
1
1
2008-03-24
1
2
2011-07-13
1
3
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_software.name
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1995-12-21
REL
REL
SO4
SULFATE ION
MOH
METHANOL
HOH
water
3RN3
PDB ENTRY 3RN3
PDB
experimental model
SO4
150
2
SO4
SO4
150
A
SO4
151
2
SO4
SO4
151
A
MOH
170
3
MOH
MOH
170
A
MOH
171
3
MOH
MOH
171
A
MOH
172
3
MOH
MOH
172
A
MOH
173
3
MOH
MOH
173
A
HOH
200
4
HOH
HOH
200
A
HOH
201
4
HOH
HOH
201
A
HOH
202
4
HOH
HOH
202
A
HOH
203
4
HOH
HOH
203
A
HOH
204
4
HOH
HOH
204
A
HOH
205
4
HOH
HOH
205
A
HOH
206
4
HOH
HOH
206
A
HOH
207
4
HOH
HOH
207
A
HOH
208
4
HOH
HOH
208
A
HOH
209
4
HOH
HOH
209
A
HOH
210
4
HOH
HOH
210
A
HOH
211
4
HOH
HOH
211
A
HOH
212
4
HOH
HOH
212
A
HOH
213
4
HOH
HOH
213
A
HOH
214
4
HOH
HOH
214
A
HOH
215
4
HOH
HOH
215
A
HOH
216
4
HOH
HOH
216
A
HOH
217
4
HOH
HOH
217
A
HOH
218
4
HOH
HOH
218
A
HOH
219
4
HOH
HOH
219
A
HOH
220
4
HOH
HOH
220
A
HOH
221
4
HOH
HOH
221
A
HOH
222
4
HOH
HOH
222
A
HOH
223
4
HOH
HOH
223
A
HOH
224
4
HOH
HOH
224
A
HOH
225
4
HOH
HOH
225
A
HOH
226
4
HOH
HOH
226
A
HOH
227
4
HOH
HOH
227
A
HOH
228
4
HOH
HOH
228
A
HOH
229
4
HOH
HOH
229
A
HOH
230
4
HOH
HOH
230
A
HOH
231
4
HOH
HOH
231
A
HOH
232
4
HOH
HOH
232
A
HOH
233
4
HOH
HOH
233
A
HOH
234
4
HOH
HOH
234
A
HOH
235
4
HOH
HOH
235
A
HOH
236
4
HOH
HOH
236
A
HOH
237
4
HOH
HOH
237
A
HOH
238
4
HOH
HOH
238
A
HOH
239
4
HOH
HOH
239
A
HOH
240
4
HOH
HOH
240
A
HOH
241
4
HOH
HOH
241
A
HOH
242
4
HOH
HOH
242
A
HOH
243
4
HOH
HOH
243
A
HOH
244
4
HOH
HOH
244
A
HOH
245
4
HOH
HOH
245
A
HOH
246
4
HOH
HOH
246
A
HOH
247
4
HOH
HOH
247
A
HOH
248
4
HOH
HOH
248
A
HOH
249
4
HOH
HOH
249
A
HOH
250
4
HOH
HOH
250
A
HOH
251
4
HOH
HOH
251
A
HOH
252
4
HOH
HOH
252
A
HOH
253
4
HOH
HOH
253
A
HOH
254
4
HOH
HOH
254
A
HOH
255
4
HOH
HOH
255
A
HOH
256
4
HOH
HOH
256
A
HOH
257
4
HOH
HOH
257
A
HOH
258
4
HOH
HOH
258
A
HOH
259
4
HOH
HOH
259
A
HOH
260
4
HOH
HOH
260
A
HOH
261
4
HOH
HOH
261
A
HOH
262
4
HOH
HOH
262
A
HOH
263
4
HOH
HOH
263
A
HOH
264
4
HOH
HOH
264
A
HOH
265
4
HOH
HOH
265
A
HOH
266
4
HOH
HOH
266
A
HOH
267
4
HOH
HOH
267
A
HOH
268
4
HOH
HOH
268
A
HOH
269
4
HOH
HOH
269
A
HOH
270
4
HOH
HOH
270
A
HOH
271
4
HOH
HOH
271
A
HOH
272
4
HOH
HOH
272
A
HOH
273
4
HOH
HOH
273
A
HOH
274
4
HOH
HOH
274
A
HOH
275
4
HOH
HOH
275
A
HOH
276
4
HOH
HOH
276
A
HOH
277
4
HOH
HOH
277
A
HOH
278
4
HOH
HOH
278
A
HOH
279
4
HOH
HOH
279
A
HOH
280
4
HOH
HOH
280
A
HOH
281
4
HOH
HOH
281
A
LYS
1
n
1
LYS
1
A
GLU
2
n
2
GLU
2
A
THR
3
n
3
THR
3
A
ALA
4
n
4
ALA
4
A
ALA
5
n
5
ALA
5
A
ALA
6
n
6
ALA
6
A
LYS
7
n
7
LYS
7
A
PHE
8
n
8
PHE
8
A
GLU
9
n
9
GLU
9
A
ARG
10
n
10
ARG
10
A
GLN
11
n
11
GLN
11
A
HIS
12
n
12
HIS
12
A
MET
13
n
13
MET
13
A
ASP
14
n
14
ASP
14
A
SER
15
n
15
SER
15
A
SER
16
n
16
SER
16
A
THR
17
n
17
THR
17
A
SER
18
n
18
SER
18
A
ALA
19
n
19
ALA
19
A
ALA
20
n
20
ALA
20
A
SER
21
n
21
SER
21
A
SER
22
n
22
SER
22
A
SER
23
n
23
SER
23
A
ASN
24
n
24
ASN
24
A
TYR
25
n
25
TYR
25
A
CYS
26
n
26
CYS
26
A
ASN
27
n
27
ASN
27
A
GLN
28
n
28
GLN
28
A
MET
29
n
29
MET
29
A
MET
30
n
30
MET
30
A
LYS
31
n
31
LYS
31
A
SER
32
n
32
SER
32
A
ARG
33
n
33
ARG
33
A
ASN
34
n
34
ASN
34
A
LEU
35
n
35
LEU
35
A
THR
36
n
36
THR
36
A
LYS
37
n
37
LYS
37
A
ASP
38
n
38
ASP
38
A
ARG
39
n
39
ARG
39
A
CYS
40
n
40
CYS
40
A
LYS
41
n
41
LYS
41
A
PRO
42
n
42
PRO
42
A
VAL
43
n
43
VAL
43
A
ASN
44
n
44
ASN
44
A
THR
45
n
45
THR
45
A
PHE
46
n
46
PHE
46
A
VAL
47
n
47
VAL
47
A
HIS
48
n
48
HIS
48
A
GLU
49
n
49
GLU
49
A
SER
50
n
50
SER
50
A
LEU
51
n
51
LEU
51
A
ALA
52
n
52
ALA
52
A
ASP
53
n
53
ASP
53
A
VAL
54
n
54
VAL
54
A
GLN
55
n
55
GLN
55
A
ALA
56
n
56
ALA
56
A
VAL
57
n
57
VAL
57
A
CYS
58
n
58
CYS
58
A
SER
59
n
59
SER
59
A
GLN
60
n
60
GLN
60
A
LYS
61
n
61
LYS
61
A
ASN
62
n
62
ASN
62
A
VAL
63
n
63
VAL
63
A
ALA
64
n
64
ALA
64
A
CYS
65
n
65
CYS
65
A
LYS
66
n
66
LYS
66
A
ASN
67
n
67
ASN
67
A
GLY
68
n
68
GLY
68
A
GLN
69
n
69
GLN
69
A
THR
70
n
70
THR
70
A
ASN
71
n
71
ASN
71
A
CYS
72
n
72
CYS
72
A
TYR
73
n
73
TYR
73
A
GLN
74
n
74
GLN
74
A
SER
75
n
75
SER
75
A
TYR
76
n
76
TYR
76
A
SER
77
n
77
SER
77
A
THR
78
n
78
THR
78
A
MET
79
n
79
MET
79
A
SER
80
n
80
SER
80
A
ILE
81
n
81
ILE
81
A
THR
82
n
82
THR
82
A
ASP
83
n
83
ASP
83
A
CYS
84
n
84
CYS
84
A
ARG
85
n
85
ARG
85
A
GLU
86
n
86
GLU
86
A
THR
87
n
87
THR
87
A
GLY
88
n
88
GLY
88
A
SER
89
n
89
SER
89
A
SER
90
n
90
SER
90
A
LYS
91
n
91
LYS
91
A
TYR
92
n
92
TYR
92
A
PRO
93
n
93
PRO
93
A
ASN
94
n
94
ASN
94
A
CYS
95
n
95
CYS
95
A
ALA
96
n
96
ALA
96
A
TYR
97
n
97
TYR
97
A
LYS
98
n
98
LYS
98
A
THR
99
n
99
THR
99
A
THR
100
n
100
THR
100
A
GLN
101
n
101
GLN
101
A
ALA
102
n
102
ALA
102
A
ASN
103
n
103
ASN
103
A
LYS
104
n
104
LYS
104
A
HIS
105
n
105
HIS
105
A
ILE
106
n
106
ILE
106
A
ILE
107
n
107
ILE
107
A
VAL
108
n
108
VAL
108
A
ALA
109
n
109
ALA
109
A
CYS
110
n
110
CYS
110
A
GLU
111
n
111
GLU
111
A
GLY
112
n
112
GLY
112
A
ASN
113
n
113
ASN
113
A
PRO
114
n
114
PRO
114
A
TYR
115
n
115
TYR
115
A
VAL
116
n
116
VAL
116
A
PRO
117
n
117
PRO
117
A
VAL
118
n
118
VAL
118
A
HIS
119
n
119
HIS
119
A
PHE
120
n
120
PHE
120
A
ASP
121
n
121
ASP
121
A
ALA
122
n
122
ALA
122
A
SER
123
n
123
SER
123
A
VAL
124
n
124
VAL
124
A
0.15
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASN
44
A
O
ASN
44
A
N
CYS
84
A
N
CYS
84
A
O
MET
79
A
O
MET
79
A
N
LYS
104
A
N
LYS
104
A
O
LYS
61
A
O
LYS
61
A
N
GLN
74
A
N
GLN
74
A
O
TYR
73
A
O
TYR
73
A
N
VAL
108
A
N
VAL
108
A
O
ILE
107
A
O
ILE
107
A
N
ALA
122
A
N
ALA
122
1
5.88
0.90
118.30
124.18
A
A
A
CB
CG
OD1
ASP
ASP
ASP
14
14
14
N
1
-5.99
0.90
118.30
112.31
A
A
A
CB
CG
OD2
ASP
ASP
ASP
14
14
14
N
1
6.57
0.90
118.30
124.87
A
A
A
CB
CG
OD1
ASP
ASP
ASP
53
53
53
N
1
-6.93
0.90
118.30
111.37
A
A
A
CB
CG
OD2
ASP
ASP
ASP
53
53
53
N
1
5.88
0.90
118.30
124.18
A
A
A
CB
CG
OD1
ASP
ASP
ASP
83
83
83
N
1
-8.93
0.90
118.30
109.37
A
A
A
CB
CG
OD2
ASP
ASP
ASP
83
83
83
N
1
A
A
CD
OE1
GLU
GLU
86
86
0.073
0.011
1.252
1.325
N
1
A
ASP
38
72.89
-45.68
1
A
GLN
60
-90.67
-138.32
1
A
ASN
71
-96.13
35.27
FINAL B VALUES CALCULATED BY GRADIENT METHOD
0.15
0.15
1.60
10.0
12318
12318
82.0
1
0.000
MOLECULAR REPLACEMENT
PDB ENTRY 3RN3
TNT PROTGEO
BABINET
117.0
0.57
1.60
10.0
90
1051
10
0
951
0.010
983
1.000
1.925
1321
1.500
0.000
0.000
0.000
0.010
28
1.500
0.016
140
4.000
0.000
0.008
4
20.000
16.1
1.600
10.000
1BEL
12318
2.000
0.083
1
6.3600
6.000
82
1.60
1.80
4.220
61.0
data collection
bioteX
data reduction
bioteX
phasing
MERLOT
refinement
TNT
data scaling
bioteX
HYDROLASE PHOSPHORIC DIESTER, RNA
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
A
ALA
4
A
ALA
4
HELX_P
A
HIS
12
A
HIS
12
1
1
9
A
TYR
25
A
TYR
25
HELX_P
A
SER
32
A
SER
32
1
2
8
A
LEU
51
A
LEU
51
HELX_P
A
SER
59
A
SER
59
1
3
9
disulf
2.026
A
CYS
26
A
SG
CYS
26
1_555
A
CYS
84
A
SG
CYS
84
1_555
disulf
2.044
A
CYS
40
A
SG
CYS
40
1_555
A
CYS
95
A
SG
CYS
95
1_555
disulf
2.025
A
CYS
58
A
SG
CYS
58
1_555
A
CYS
110
A
SG
CYS
110
1_555
disulf
2.022
A
CYS
65
A
SG
CYS
65
1_555
A
CYS
72
A
SG
CYS
72
1_555
HYDROLASE
HYDROLASE (PHOSPHORIC DIESTER, RNA), NUCLEASE, ENDONUCLEASE, GLYCOPROTEIN, HYDROLASE
A
TYR
92
A
TYR
92
1
A
PRO
93
A
PRO
93
5.48
A
ASN
113
A
ASN
113
1
A
PRO
114
A
PRO
114
1.29
RNAS1_BOVIN
UNP
1
1
P61823
MALKSLVLLSLLVLVLLLVRVQPSLGKETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADV
QAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV
27
150
1BEL
1
124
P61823
A
1
1
124
3
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
43
A
VAL
43
A
VAL
47
A
VAL
47
A
MET
79
A
MET
79
A
GLU
86
A
GLU
86
A
TYR
97
A
TYR
97
A
LYS
104
A
LYS
104
A
LYS
61
A
LYS
61
A
VAL
63
A
VAL
63
A
CYS
72
A
CYS
72
A
GLN
74
A
GLN
74
A
ILE
106
A
ILE
106
A
ALA
109
A
ALA
109
A
HIS
119
A
HIS
119
A
SER
123
A
SER
123
BINDING SITE FOR RESIDUE SO4 A 150
A
SO4
150
Software
7
BINDING SITE FOR RESIDUE SO4 A 151
A
SO4
151
Software
7
BINDING SITE FOR RESIDUE MOH A 170
A
MOH
170
Software
4
BINDING SITE FOR RESIDUE MOH A 171
A
MOH
171
Software
5
BINDING SITE FOR RESIDUE MOH A 172
A
MOH
172
Software
5
BINDING SITE FOR RESIDUE MOH A 173
A
MOH
173
Software
3
A
SER
22
A
SER
22
7
2_474
A
SER
23
A
SER
23
7
2_474
A
ASN
34
A
ASN
34
7
3_554
A
LYS
37
A
LYS
37
7
3_554
A
SER
50
A
SER
50
7
1_555
A
MOH
171
E
MOH
7
1_555
A
HOH
254
H
HOH
7
1_555
A
GLN
11
A
GLN
11
7
1_555
A
HIS
12
A
HIS
12
7
1_555
A
LYS
41
A
LYS
41
7
1_555
A
HIS
119
A
HIS
119
7
1_555
A
PHE
120
A
PHE
120
7
1_555
A
HOH
252
H
HOH
7
1_555
A
HOH
273
H
HOH
7
1_555
A
ALA
6
A
ALA
6
4
3_554
A
GLN
60
A
GLN
60
4
1_555
A
TYR
76
A
TYR
76
4
1_555
A
SER
77
A
SER
77
4
1_555
A
LYS
37
A
LYS
37
5
3_554
A
LEU
51
A
LEU
51
5
1_555
A
ALA
52
A
ALA
52
5
1_555
A
SO4
150
B
SO4
5
1_555
A
HOH
266
H
HOH
5
1_555
A
ARG
10
A
ARG
10
5
1_555
A
GLN
11
A
GLN
11
5
1_555
A
ASN
34
A
ASN
34
5
1_555
A
LEU
35
A
LEU
35
5
1_555
A
HOH
203
H
HOH
5
1_555
A
TYR
73
A
TYR
73
3
2_575
A
GLU
86
A
GLU
86
3
1_555
A
SER
90
A
SER
90
3
1_555
19
P 21 21 21