0.016044
0.000000
0.000000
0.000000
0.016044
0.000000
0.000000
0.000000
0.015211
0.00000
0.00000
0.00000
Huang, D.B.
Huxford, T.
Chen, Y.Q.
Ghosh, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
62.330
62.330
65.740
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
UK
Structure
STRUE6
2005
0969-2126
5
1427
1436
10.1016/S0969-2126(97)00293-1
9384558
The role of DNA in the mechanism of NFkappaB dimer formation: crystal structures of the dimerization domains of the p50 and p65 subunits.
1997
UK
Nature
NATUAS
0006
0028-0836
373
303
Structure of NF-Kappa B p50 Homodimer Bound to a Kappa B Site
1995
10.2210/pdb1bfs/pdb
pdb_00001bfs
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
105
1
IMAGE PLATE
1996-10-25
MARRESEARCH
M
x-ray
1
1.5418
1.0
1.5418
12256.831
NUCLEAR FACTOR NF-KAPPA-B P50
DIMERIZATION DOMAIN
1
nat
polymer
18.015
water
72
nat
water
no
no
ASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVNITKP
ASVFVQLRRKSDLETSEPKPFLYYPE
ASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVNITKP
ASVFVQLRRKSDLETSEPKPFLYYPE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
sample
10090
Mus musculus
1
2.60
49.
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Other
1
0
1998-01-28
1
1
2008-03-24
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1997-09-12
REL
HOH
water
HOH
401
2
HOH
HOH
401
A
HOH
402
2
HOH
HOH
402
A
HOH
403
2
HOH
HOH
403
A
HOH
404
2
HOH
HOH
404
A
HOH
406
2
HOH
HOH
406
A
HOH
407
2
HOH
HOH
407
A
HOH
409
2
HOH
HOH
409
A
HOH
413
2
HOH
HOH
413
A
HOH
414
2
HOH
HOH
414
A
HOH
415
2
HOH
HOH
415
A
HOH
416
2
HOH
HOH
416
A
HOH
417
2
HOH
HOH
417
A
HOH
418
2
HOH
HOH
418
A
HOH
419
2
HOH
HOH
419
A
HOH
422
2
HOH
HOH
422
A
HOH
423
2
HOH
HOH
423
A
HOH
425
2
HOH
HOH
425
A
HOH
426
2
HOH
HOH
426
A
HOH
434
2
HOH
HOH
434
A
HOH
437
2
HOH
HOH
437
A
HOH
438
2
HOH
HOH
438
A
HOH
445
2
HOH
HOH
445
A
HOH
455
2
HOH
HOH
455
A
HOH
456
2
HOH
HOH
456
A
HOH
457
2
HOH
HOH
457
A
HOH
460
2
HOH
HOH
460
A
HOH
461
2
HOH
HOH
461
A
HOH
462
2
HOH
HOH
462
A
HOH
468
2
HOH
HOH
468
A
HOH
472
2
HOH
HOH
472
A
HOH
475
2
HOH
HOH
475
A
HOH
480
2
HOH
HOH
480
A
HOH
481
2
HOH
HOH
481
A
HOH
485
2
HOH
HOH
485
A
HOH
486
2
HOH
HOH
486
A
HOH
487
2
HOH
HOH
487
A
HOH
488
2
HOH
HOH
488
A
HOH
489
2
HOH
HOH
489
A
HOH
491
2
HOH
HOH
491
A
HOH
492
2
HOH
HOH
492
A
HOH
493
2
HOH
HOH
493
A
HOH
502
2
HOH
HOH
502
A
HOH
504
2
HOH
HOH
504
A
HOH
506
2
HOH
HOH
506
A
HOH
508
2
HOH
HOH
508
A
HOH
509
2
HOH
HOH
509
A
HOH
510
2
HOH
HOH
510
A
HOH
511
2
HOH
HOH
511
A
HOH
512
2
HOH
HOH
512
A
HOH
513
2
HOH
HOH
513
A
HOH
514
2
HOH
HOH
514
A
HOH
516
2
HOH
HOH
516
A
HOH
517
2
HOH
HOH
517
A
HOH
518
2
HOH
HOH
518
A
HOH
519
2
HOH
HOH
519
A
HOH
520
2
HOH
HOH
520
A
HOH
522
2
HOH
HOH
522
A
HOH
525
2
HOH
HOH
525
A
HOH
526
2
HOH
HOH
526
A
HOH
527
2
HOH
HOH
527
A
HOH
528
2
HOH
HOH
528
A
HOH
530
2
HOH
HOH
530
A
HOH
533
2
HOH
HOH
533
A
HOH
534
2
HOH
HOH
534
A
HOH
536
2
HOH
HOH
536
A
HOH
537
2
HOH
HOH
537
A
HOH
538
2
HOH
HOH
538
A
HOH
540
2
HOH
HOH
540
A
HOH
541
2
HOH
HOH
541
A
HOH
542
2
HOH
HOH
542
A
HOH
543
2
HOH
HOH
543
A
HOH
545
2
HOH
HOH
545
A
ALA
245
n
1
ALA
245
A
SER
246
n
2
SER
246
A
ASN
247
n
3
ASN
247
A
LEU
248
n
4
LEU
248
A
LYS
249
n
5
LYS
249
A
ILE
250
n
6
ILE
250
A
VAL
251
n
7
VAL
251
A
ARG
252
n
8
ARG
252
A
MET
253
n
9
MET
253
A
ASP
254
n
10
ASP
254
A
ARG
255
n
11
ARG
255
A
THR
256
n
12
THR
256
A
ALA
257
n
13
ALA
257
A
GLY
258
n
14
GLY
258
A
CYS
259
n
15
CYS
259
A
VAL
260
n
16
VAL
260
A
THR
261
n
17
THR
261
A
GLY
262
n
18
GLY
262
A
GLY
263
n
19
GLY
263
A
GLU
264
n
20
GLU
264
A
GLU
265
n
21
GLU
265
A
ILE
266
n
22
ILE
266
A
TYR
267
n
23
TYR
267
A
LEU
268
n
24
LEU
268
A
LEU
269
n
25
LEU
269
A
CYS
270
n
26
CYS
270
A
ASP
271
n
27
ASP
271
A
LYS
272
n
28
LYS
272
A
VAL
273
n
29
VAL
273
A
GLN
274
n
30
GLN
274
A
LYS
275
n
31
LYS
275
A
ASP
276
n
32
ASP
276
A
ASP
277
n
33
ASP
277
A
ILE
278
n
34
ILE
278
A
GLN
279
n
35
GLN
279
A
ILE
280
n
36
ILE
280
A
ARG
281
n
37
ARG
281
A
PHE
282
n
38
PHE
282
A
TYR
283
n
39
TYR
283
A
GLU
284
n
40
GLU
284
A
GLU
285
n
41
GLU
285
A
GLU
286
n
42
GLU
286
A
GLU
287
n
43
GLU
287
A
ASN
288
n
44
ASN
288
A
GLY
289
n
45
GLY
289
A
GLY
290
n
46
GLY
290
A
VAL
291
n
47
VAL
291
A
TRP
292
n
48
TRP
292
A
GLU
293
n
49
GLU
293
A
GLY
294
n
50
GLY
294
A
PHE
295
n
51
PHE
295
A
GLY
296
n
52
GLY
296
A
ASP
297
n
53
ASP
297
A
PHE
298
n
54
PHE
298
A
SER
299
n
55
SER
299
A
PRO
300
n
56
PRO
300
A
THR
301
n
57
THR
301
A
ASP
302
n
58
ASP
302
A
VAL
303
n
59
VAL
303
A
HIS
304
n
60
HIS
304
A
ARG
305
n
61
ARG
305
A
GLN
306
n
62
GLN
306
A
PHE
307
n
63
PHE
307
A
ALA
308
n
64
ALA
308
A
ILE
309
n
65
ILE
309
A
VAL
310
n
66
VAL
310
A
PHE
311
n
67
PHE
311
A
LYS
312
n
68
LYS
312
A
THR
313
n
69
THR
313
A
PRO
314
n
70
PRO
314
A
LYS
315
n
71
LYS
315
A
TYR
316
n
72
TYR
316
A
LYS
317
n
73
LYS
317
A
ASP
318
n
74
ASP
318
A
VAL
319
n
75
VAL
319
A
ASN
320
n
76
ASN
320
A
ILE
321
n
77
ILE
321
A
THR
322
n
78
THR
322
A
LYS
323
n
79
LYS
323
A
PRO
324
n
80
PRO
324
A
ALA
325
n
81
ALA
325
A
SER
326
n
82
SER
326
A
VAL
327
n
83
VAL
327
A
PHE
328
n
84
PHE
328
A
VAL
329
n
85
VAL
329
A
GLN
330
n
86
GLN
330
A
LEU
331
n
87
LEU
331
A
ARG
332
n
88
ARG
332
A
ARG
333
n
89
ARG
333
A
LYS
334
n
90
LYS
334
A
SER
335
n
91
SER
335
A
ASP
336
n
92
ASP
336
A
LEU
337
n
93
LEU
337
A
GLU
338
n
94
GLU
338
A
THR
339
n
95
THR
339
A
SER
340
n
96
SER
340
A
GLU
341
n
97
GLU
341
A
PRO
342
n
98
PRO
342
A
LYS
343
n
99
LYS
343
A
PRO
344
n
100
PRO
344
A
PHE
345
n
101
PHE
345
A
LEU
346
n
102
LEU
346
A
TYR
347
n
103
TYR
347
A
TYR
348
n
104
TYR
348
A
PRO
349
n
105
PRO
349
A
GLU
350
n
106
GLU
350
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
62.3300000000
62.3300000000
32.8700000000
A
O
GLY
258
A
O
GLY
14
A
N
LEU
346
A
N
LEU
102
A
O
LYS
343
A
O
LYS
99
A
N
VAL
329
A
N
VAL
85
A
O
PHE
328
A
O
PHE
84
A
N
TYR
283
A
N
TYR
39
A
O
PHE
282
A
O
PHE
38
A
N
GLY
294
A
N
GLY
50
A
O
ILE
309
A
O
ILE
65
A
N
LEU
268
A
N
LEU
24
A
O
LEU
269
A
O
LEU
25
A
N
ARG
252
A
N
ARG
8
1
A
ARG
252
-171.97
146.96
1
A
GLU
286
-69.97
27.75
1
A
GLU
287
51.16
-110.83
PARHCSDX.PRO
TOPHCSDX.PRO
28.6
0.2870000
0.1830000
0.1830000
2.2
6.0
561
5613
10.
70.
1
2.
MOLECULAR REPLACEMENT
MONOMER A OF DIMERIZATION DOMAINS OF P50RHR/DNA COMPLEX
0.25
2.2
6.0
78
942
0
0
864
0.01
1.7
26.5
1.37
2.2
25.0
1BFS
7896
0.0490000
1
13.2
98.
0.2700000
2.20
2.28
4.1
98.6
model building
X-PLOR
refinement
X-PLOR
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
STRUCTURE OF NF-KB P50 HOMODIMER BOUND TO A KB SITE
1
N
N
2
N
N
A
GLU
287
A
GLU
43
HELX_P
A
GLY
289
A
GLY
45
5
1
3
A
PRO
300
A
PRO
56
HELX_P
A
ASP
302
A
ASP
58
5
2
3
TRANSCRIPTION FACTOR
TRANSCRIPTION FACTOR, NF-KB, DIMERIZATION DOMAIN
NFKB1_MOUSE
UNP
1
1
P25799
MADDDPYGTGQMFHLNTALTHSIFNAELYSPEIPLSTDGPYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYP
QVKICNYVGPAKVIVQLVTNGKNIHLHAHSLVGKHCEDGVCTVTAGPKDMVVGFANLGILHVTKKKVFETLEARMTEACI
RGYNPGLLVHSDLAYLQAEGGGDRQLTDREKEIIRQAAVQQTKEMDLSVVRLMFTAFLPDSTGSFTRRLEPVVSDAIYDS
KAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVN
ITKPASVFVQLRRKSDLETSEPKPFLYYPEIKDKEEVQRKRQKLMPNFSDSFGGGSGAGAGGGGMFGSGGGGGSTGSPGP
GYGYSNYGFPPYGGITFHPGVTKSNAGVTHGTINTKFKNGPKDCAKSDDEESLTLPEKETEGEGPSLPMACTKTEPIALA
STMEDKEQDMGFQDNLFLEKALQLARRHANALFDYAVTGDVKMLLAVQRHLTAVQDENGDSVLHLAIIHLHAQLVRDLLE
VTSGLISDDIINMRNDLYQTPLHLAVITKQEDVVEDLLRVGADLSLLDRWGNSVLHLAAKEGHDRILSILLKSRKAAPLI
DHPNGEGLNAIHIAVMSNSLPCLLLLVAAGAEVNAQEQKSGRTPLHLAVEYDNISLAGCLLLEGDAHVDSTTYDGTTPLH
IAAGRGSTRLAALLKAAGADPLVENFEPLYDLDDSWEKAGEDEGVVPGTTPLDMAANWQVFDILNGKPYEPVFTSDDILP
QGDMKQLTEDTRLQLCKLLEIPDPDKNWATLAQKLGLGILNNAFRLSPAPSKTLMDNYEVSGGTIKELMEALQQMGYTEA
IEVIQAAFRTPATTASSPVTTAQVHCLPLSSSSTRQHIDELRDSDSVCDSGVETSFRKLSFTESLTGDSPLLSLNKMPHG
YGQEGPIEGKI
245
350
1BFS
245
350
P25799
A
1
1
106
5
3
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ALA
257
A
ALA
13
A
CYS
259
A
CYS
15
A
LYS
343
A
LYS
99
A
TYR
348
A
TYR
104
A
ALA
325
A
ALA
81
A
ARG
332
A
ARG
88
A
GLN
279
A
GLN
35
A
GLU
285
A
GLU
41
A
VAL
291
A
VAL
47
A
PHE
295
A
PHE
51
A
ALA
308
A
ALA
64
A
LYS
312
A
LYS
68
A
GLU
265
A
GLU
21
A
CYS
270
A
CYS
26
A
ILE
250
A
ILE
6
A
MET
253
A
MET
9
92
P 41 21 2