1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Bertini, I. Kurtz Junior, D.M. Eidsness, M.K. Liu, G. Luchinat, C. Rosato, A. Scott, R.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking Fe 3 55.845 FE (III) ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking GW J.Biol.Inorg.Chem. JJBCFA 2154 0949-8257 3 401 -1 Solution Structure of Reduced Clostridium Pasteurianum Rubredoxin 1998 10.2210/pdb1bfy/pdb pdb_00001bfy 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 REDUCED CLOSTRIDIUM PASTEURIANUM RUBREDOXIN 6051.611 RUBREDOXIN 1.18.1.1 1 nat polymer 55.845 FE (III) ION 1 syn non-polymer no no MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEE MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Clostridium sample 1501 Clostridium pasteurianum database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1999-05-25 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1998-05-23 REL REL FE FE (III) ION THE STRUCTURE WAS DETERMINED USING 2D NMR SPECTROSCOPY. LOWEST TARGET FUNCTION 50 20 NOESY TOCSY DQF-COSY IR-NOESY 0.1 M 6.8 NORMAL 298 K distance geometry WATER GUNTERT,WUTHRICH refinement DYANA 1.4 structure solution BRUKER XWINNMR XWINNMR 800 Bruker AVANCE800 600 Bruker AMX600 FE 55 2 FE FE 55 A MET 1 n 1 MET 1 A LYS 2 n 2 LYS 2 A LYS 3 n 3 LYS 3 A TYR 4 n 4 TYR 4 A THR 5 n 5 THR 5 A CYS 6 n 6 CYS 6 A THR 7 n 7 THR 7 A VAL 8 n 8 VAL 8 A CYS 9 n 9 CYS 9 A GLY 10 n 10 GLY 10 A TYR 11 n 11 TYR 11 A ILE 12 n 12 ILE 12 A TYR 13 n 13 TYR 13 A ASN 14 n 14 ASN 14 A PRO 15 n 15 PRO 15 A GLU 16 n 16 GLU 16 A ASP 17 n 17 ASP 17 A GLY 18 n 18 GLY 18 A ASP 19 n 19 ASP 19 A PRO 20 n 20 PRO 20 A ASP 21 n 21 ASP 21 A ASN 22 n 22 ASN 22 A GLY 23 n 23 GLY 23 A VAL 24 n 24 VAL 24 A ASN 25 n 25 ASN 25 A PRO 26 n 26 PRO 26 A GLY 27 n 27 GLY 27 A THR 28 n 28 THR 28 A ASP 29 n 29 ASP 29 A PHE 30 n 30 PHE 30 A LYS 31 n 31 LYS 31 A ASP 32 n 32 ASP 32 A ILE 33 n 33 ILE 33 A PRO 34 n 34 PRO 34 A ASP 35 n 35 ASP 35 A ASP 36 n 36 ASP 36 A TRP 37 n 37 TRP 37 A VAL 38 n 38 VAL 38 A CYS 39 n 39 CYS 39 A PRO 40 n 40 PRO 40 A LEU 41 n 41 LEU 41 A CYS 42 n 42 CYS 42 A GLY 43 n 43 GLY 43 A VAL 44 n 44 VAL 44 A GLY 45 n 45 GLY 45 A LYS 46 n 46 LYS 46 A ASP 47 n 47 ASP 47 A GLN 48 n 48 GLN 48 A PHE 49 n 49 PHE 49 A GLU 50 n 50 GLU 50 A GLU 51 n 51 GLU 51 A VAL 52 n 52 VAL 52 A GLU 53 n 53 GLU 53 A GLU 54 n 54 GLU 54 A author_defined_assembly 1 monomeric A CYS 6 A SG CYS 6 1_555 A FE 55 B FE FE 1_555 A CYS 9 A SG CYS 9 1_555 92.5 A CYS 6 A SG CYS 6 1_555 A FE 55 B FE FE 1_555 A CYS 39 A SG CYS 39 1_555 100.5 A CYS 9 A SG CYS 9 1_555 A FE 55 B FE FE 1_555 A CYS 39 A SG CYS 39 1_555 121.0 A CYS 6 A SG CYS 6 1_555 A FE 55 B FE FE 1_555 A CYS 42 A SG CYS 42 1_555 125.0 A CYS 9 A SG CYS 9 1_555 A FE 55 B FE FE 1_555 A CYS 42 A SG CYS 42 1_555 106.2 A CYS 39 A SG CYS 39 1_555 A FE 55 B FE FE 1_555 A CYS 42 A SG CYS 42 1_555 111.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LYS 3 A O LYS 3 A N VAL 52 A N VAL 52 1 A CA MET 1 WRONG HAND 4 A CA MET 1 WRONG HAND 5 A CA MET 1 WRONG HAND 7 A CA MET 1 WRONG HAND 8 A CA MET 1 WRONG HAND 9 A CA MET 1 WRONG HAND 10 A CA MET 1 WRONG HAND 11 A CA MET 1 WRONG HAND 12 A CA MET 1 WRONG HAND 13 A CA MET 1 WRONG HAND 14 A CA MET 1 WRONG HAND 17 A CA MET 1 WRONG HAND 18 A CA MET 1 WRONG HAND 19 A CA MET 1 WRONG HAND 6 A A GLU GLU 53 54 149.72 1 A TYR 4 0.085 SIDE CHAIN 1 A TYR 13 0.077 SIDE CHAIN 2 A TYR 11 0.103 SIDE CHAIN 2 A TYR 13 0.073 SIDE CHAIN 3 A TYR 4 0.076 SIDE CHAIN 3 A TYR 13 0.072 SIDE CHAIN 4 A TYR 4 0.094 SIDE CHAIN 4 A TYR 13 0.084 SIDE CHAIN 5 A TYR 13 0.078 SIDE CHAIN 6 A TYR 13 0.077 SIDE CHAIN 7 A TYR 4 0.118 SIDE CHAIN 7 A TYR 13 0.076 SIDE CHAIN 10 A TYR 13 0.085 SIDE CHAIN 11 A TYR 4 0.089 SIDE CHAIN 12 A TYR 13 0.090 SIDE CHAIN 12 A PHE 30 0.087 SIDE CHAIN 13 A TYR 4 0.115 SIDE CHAIN 14 A TYR 13 0.070 SIDE CHAIN 16 A TYR 4 0.105 SIDE CHAIN 16 A TYR 13 0.083 SIDE CHAIN 16 A PHE 30 0.078 SIDE CHAIN 17 A TYR 4 0.110 SIDE CHAIN 17 A TYR 13 0.081 SIDE CHAIN 18 A TYR 4 0.099 SIDE CHAIN 18 A TYR 13 0.088 SIDE CHAIN 19 A TYR 13 0.074 SIDE CHAIN 9 8.31 1.20 111.50 119.81 A A A CB CA C CYS CYS CYS 42 42 42 N 1 A LYS 2 58.72 167.41 1 A CYS 6 -68.77 -97.56 1 A THR 7 -172.95 -41.65 1 A VAL 8 -147.79 -38.62 1 A VAL 44 -145.46 -51.85 2 A CYS 6 -74.84 -112.08 2 A THR 7 -160.18 -158.20 2 A CYS 9 -153.19 -55.85 2 A CYS 39 -34.57 148.55 2 A ASP 47 54.67 -68.53 3 A CYS 6 -58.91 94.72 3 A TYR 11 -150.82 66.13 3 A ILE 12 -37.79 125.19 3 A CYS 39 -39.65 144.02 3 A LEU 41 -149.32 35.87 3 A CYS 42 -131.19 -47.41 3 A ASP 47 21.11 85.83 3 A GLN 48 75.20 150.66 3 A PHE 49 -171.02 109.44 4 A LYS 2 62.54 162.00 4 A CYS 6 -77.56 47.45 4 A THR 7 43.39 -124.27 4 A CYS 9 -133.00 -70.04 4 A TYR 11 -131.91 -57.63 4 A ILE 12 75.17 119.15 4 A VAL 44 48.07 -149.39 4 A ASP 47 -158.43 -63.59 5 A LYS 2 60.15 168.36 5 A VAL 8 -123.34 -65.15 5 A CYS 9 -94.56 -60.53 5 A VAL 44 78.84 123.35 5 A LYS 46 53.87 74.05 5 A ASP 47 -152.59 -69.67 6 A THR 7 -69.28 81.02 6 A VAL 8 66.98 -74.88 6 A CYS 9 43.05 -122.68 6 A ASP 19 -151.87 63.94 6 A CYS 42 -142.67 -68.19 6 A LYS 46 -148.55 33.89 7 A LYS 2 62.18 171.60 7 A VAL 8 -140.50 24.22 7 A TYR 11 21.00 65.27 7 A LEU 41 68.80 -62.31 8 A LYS 2 54.64 173.38 8 A VAL 8 -148.57 16.20 8 A ILE 12 71.32 128.06 8 A LYS 46 62.38 -88.02 8 A ASP 47 46.83 -72.48 9 A LYS 2 64.04 167.82 9 A THR 7 53.84 -94.41 9 A TYR 11 -134.88 -57.76 9 A ILE 12 75.22 121.25 9 A VAL 44 -143.58 -73.23 9 A ASP 47 30.09 -93.74 9 A GLN 48 -150.34 64.84 9 A PHE 49 -45.72 156.12 10 A LYS 2 57.79 174.94 10 A THR 7 -76.40 -74.18 10 A VAL 44 -99.50 -71.20 10 A ASP 47 -163.54 -82.93 10 A PHE 49 49.32 92.43 11 A LYS 2 62.60 167.47 11 A THR 7 -25.84 -82.36 11 A CYS 9 -141.09 -78.09 11 A LEU 41 70.19 43.54 11 A LYS 46 58.57 78.32 11 A ASP 47 -153.81 -99.68 12 A LYS 2 59.73 170.29 12 A THR 7 65.64 -72.37 12 A TYR 11 22.19 63.88 12 A PRO 40 -69.60 95.81 12 A LEU 41 85.42 59.11 12 A CYS 42 -147.22 -94.67 12 A ASP 47 -138.85 -65.84 13 A LYS 2 62.47 165.33 13 A CYS 6 -81.37 -121.01 13 A THR 7 -160.49 -46.08 13 A VAL 8 -104.65 -66.75 13 A TYR 11 -65.76 87.21 13 A ASP 47 29.26 -94.42 13 A PHE 49 -47.73 156.26 14 A LYS 2 66.09 162.34 14 A THR 7 -41.60 -76.18 14 A VAL 8 -99.70 48.50 14 A CYS 9 -160.95 -60.95 14 A LYS 46 59.50 101.78 14 A ASP 47 -138.80 -75.73 14 A GLN 48 -144.69 55.34 15 A THR 7 -82.29 -99.26 15 A GLN 48 -171.92 -38.66 16 A VAL 8 -132.50 -60.54 16 A CYS 9 -95.92 -89.31 16 A CYS 42 -147.76 -57.61 16 A GLN 48 -179.37 -30.06 16 A GLU 53 -69.00 82.13 17 A LYS 2 55.83 174.82 17 A VAL 8 -153.35 35.91 17 A CYS 9 -121.79 -65.25 17 A CYS 42 -125.65 -97.83 17 A VAL 44 76.94 -173.20 17 A ASP 47 -159.45 -75.49 17 A PHE 49 53.15 173.47 18 A LYS 2 66.32 164.38 18 A THR 7 76.14 -62.46 18 A VAL 8 -78.79 43.72 18 A CYS 9 177.05 -102.49 18 A ILE 12 79.84 110.73 18 A LEU 41 -150.80 51.50 18 A CYS 42 -142.84 -64.68 18 A VAL 44 61.77 -83.65 18 A GLN 48 36.93 47.02 19 A LYS 2 62.09 165.76 19 A VAL 8 -160.98 -32.74 19 A CYS 42 -162.90 -66.79 20 A ILE 12 69.64 113.01 20 A ASP 47 69.59 -63.24 model building DYANA model building XWINNMR refinement DYANA refinement XWINNMR SOLUTION STRUCTURE OF REDUCED CLOSTRIDIUM PASTEURIANUM RUBREDOXIN, NMR, 20 STRUCTURES 1 Y N 2 N N metalc 2.304 A CYS 6 A SG CYS 6 1_555 A FE 55 B FE FE 1_555 metalc 2.226 A CYS 9 A SG CYS 9 1_555 A FE 55 B FE FE 1_555 metalc 2.253 A CYS 39 A SG CYS 39 1_555 A FE 55 B FE FE 1_555 metalc 2.247 A CYS 42 A SG CYS 42 1_555 A FE 55 B FE FE 1_555 ELECTRON TRANSPORT ELECTRON TRANSPORT, RUBREDOXIN, SOLUTION STRUCTURE, PARAMAGNETISM, NUCLEAR RELAXATION RUBR_CLOPA UNP 1 1 P00268 MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEE 1 54 1BFY 1 54 P00268 A 1 1 54 2 anti-parallel A LYS 3 A LYS 3 A TYR 4 A TYR 4 A GLU 51 A GLU 51 A VAL 52 A VAL 52 IRON BINDING SITE. Unknown 4 BINDING SITE FOR RESIDUE FE A 55 A FE 55 Software 4 A CYS 6 A CYS 6 4 1_555 A CYS 9 A CYS 9 4 1_555 A CYS 39 A CYS 39 4 1_555 A CYS 42 A CYS 42 4 1_555 A CYS 6 A CYS 6 4 1_555 A CYS 9 A CYS 9 4 1_555 A CYS 39 A CYS 39 4 1_555 A CYS 42 A CYS 42 4 1_555 1 P 1