1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Bertini, I.
Kurtz Junior, D.M.
Eidsness, M.K.
Liu, G.
Luchinat, C.
Rosato, A.
Scott, R.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
Fe 3
55.845
FE (III) ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
GW
J.Biol.Inorg.Chem.
JJBCFA
2154
0949-8257
3
401
-1
Solution Structure of Reduced Clostridium Pasteurianum Rubredoxin
1998
10.2210/pdb1bfy/pdb
pdb_00001bfy
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
REDUCED CLOSTRIDIUM PASTEURIANUM RUBREDOXIN
6051.611
RUBREDOXIN
1.18.1.1
1
nat
polymer
55.845
FE (III) ION
1
syn
non-polymer
no
no
MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEE
MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Clostridium
sample
1501
Clostridium pasteurianum
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1999-05-25
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1998-05-23
REL
REL
FE
FE (III) ION
THE STRUCTURE WAS DETERMINED USING 2D NMR SPECTROSCOPY.
LOWEST TARGET FUNCTION
50
20
NOESY
TOCSY
DQF-COSY
IR-NOESY
0.1 M
6.8
NORMAL
298
K
distance geometry
WATER
GUNTERT,WUTHRICH
refinement
DYANA
1.4
structure solution
BRUKER XWINNMR
XWINNMR
800
Bruker
AVANCE800
600
Bruker
AMX600
FE
55
2
FE
FE
55
A
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
LYS
3
n
3
LYS
3
A
TYR
4
n
4
TYR
4
A
THR
5
n
5
THR
5
A
CYS
6
n
6
CYS
6
A
THR
7
n
7
THR
7
A
VAL
8
n
8
VAL
8
A
CYS
9
n
9
CYS
9
A
GLY
10
n
10
GLY
10
A
TYR
11
n
11
TYR
11
A
ILE
12
n
12
ILE
12
A
TYR
13
n
13
TYR
13
A
ASN
14
n
14
ASN
14
A
PRO
15
n
15
PRO
15
A
GLU
16
n
16
GLU
16
A
ASP
17
n
17
ASP
17
A
GLY
18
n
18
GLY
18
A
ASP
19
n
19
ASP
19
A
PRO
20
n
20
PRO
20
A
ASP
21
n
21
ASP
21
A
ASN
22
n
22
ASN
22
A
GLY
23
n
23
GLY
23
A
VAL
24
n
24
VAL
24
A
ASN
25
n
25
ASN
25
A
PRO
26
n
26
PRO
26
A
GLY
27
n
27
GLY
27
A
THR
28
n
28
THR
28
A
ASP
29
n
29
ASP
29
A
PHE
30
n
30
PHE
30
A
LYS
31
n
31
LYS
31
A
ASP
32
n
32
ASP
32
A
ILE
33
n
33
ILE
33
A
PRO
34
n
34
PRO
34
A
ASP
35
n
35
ASP
35
A
ASP
36
n
36
ASP
36
A
TRP
37
n
37
TRP
37
A
VAL
38
n
38
VAL
38
A
CYS
39
n
39
CYS
39
A
PRO
40
n
40
PRO
40
A
LEU
41
n
41
LEU
41
A
CYS
42
n
42
CYS
42
A
GLY
43
n
43
GLY
43
A
VAL
44
n
44
VAL
44
A
GLY
45
n
45
GLY
45
A
LYS
46
n
46
LYS
46
A
ASP
47
n
47
ASP
47
A
GLN
48
n
48
GLN
48
A
PHE
49
n
49
PHE
49
A
GLU
50
n
50
GLU
50
A
GLU
51
n
51
GLU
51
A
VAL
52
n
52
VAL
52
A
GLU
53
n
53
GLU
53
A
GLU
54
n
54
GLU
54
A
author_defined_assembly
1
monomeric
A
CYS
6
A
SG
CYS
6
1_555
A
FE
55
B
FE
FE
1_555
A
CYS
9
A
SG
CYS
9
1_555
92.5
A
CYS
6
A
SG
CYS
6
1_555
A
FE
55
B
FE
FE
1_555
A
CYS
39
A
SG
CYS
39
1_555
100.5
A
CYS
9
A
SG
CYS
9
1_555
A
FE
55
B
FE
FE
1_555
A
CYS
39
A
SG
CYS
39
1_555
121.0
A
CYS
6
A
SG
CYS
6
1_555
A
FE
55
B
FE
FE
1_555
A
CYS
42
A
SG
CYS
42
1_555
125.0
A
CYS
9
A
SG
CYS
9
1_555
A
FE
55
B
FE
FE
1_555
A
CYS
42
A
SG
CYS
42
1_555
106.2
A
CYS
39
A
SG
CYS
39
1_555
A
FE
55
B
FE
FE
1_555
A
CYS
42
A
SG
CYS
42
1_555
111.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
3
A
O
LYS
3
A
N
VAL
52
A
N
VAL
52
1
A
CA
MET
1
WRONG HAND
4
A
CA
MET
1
WRONG HAND
5
A
CA
MET
1
WRONG HAND
7
A
CA
MET
1
WRONG HAND
8
A
CA
MET
1
WRONG HAND
9
A
CA
MET
1
WRONG HAND
10
A
CA
MET
1
WRONG HAND
11
A
CA
MET
1
WRONG HAND
12
A
CA
MET
1
WRONG HAND
13
A
CA
MET
1
WRONG HAND
14
A
CA
MET
1
WRONG HAND
17
A
CA
MET
1
WRONG HAND
18
A
CA
MET
1
WRONG HAND
19
A
CA
MET
1
WRONG HAND
6
A
A
GLU
GLU
53
54
149.72
1
A
TYR
4
0.085
SIDE CHAIN
1
A
TYR
13
0.077
SIDE CHAIN
2
A
TYR
11
0.103
SIDE CHAIN
2
A
TYR
13
0.073
SIDE CHAIN
3
A
TYR
4
0.076
SIDE CHAIN
3
A
TYR
13
0.072
SIDE CHAIN
4
A
TYR
4
0.094
SIDE CHAIN
4
A
TYR
13
0.084
SIDE CHAIN
5
A
TYR
13
0.078
SIDE CHAIN
6
A
TYR
13
0.077
SIDE CHAIN
7
A
TYR
4
0.118
SIDE CHAIN
7
A
TYR
13
0.076
SIDE CHAIN
10
A
TYR
13
0.085
SIDE CHAIN
11
A
TYR
4
0.089
SIDE CHAIN
12
A
TYR
13
0.090
SIDE CHAIN
12
A
PHE
30
0.087
SIDE CHAIN
13
A
TYR
4
0.115
SIDE CHAIN
14
A
TYR
13
0.070
SIDE CHAIN
16
A
TYR
4
0.105
SIDE CHAIN
16
A
TYR
13
0.083
SIDE CHAIN
16
A
PHE
30
0.078
SIDE CHAIN
17
A
TYR
4
0.110
SIDE CHAIN
17
A
TYR
13
0.081
SIDE CHAIN
18
A
TYR
4
0.099
SIDE CHAIN
18
A
TYR
13
0.088
SIDE CHAIN
19
A
TYR
13
0.074
SIDE CHAIN
9
8.31
1.20
111.50
119.81
A
A
A
CB
CA
C
CYS
CYS
CYS
42
42
42
N
1
A
LYS
2
58.72
167.41
1
A
CYS
6
-68.77
-97.56
1
A
THR
7
-172.95
-41.65
1
A
VAL
8
-147.79
-38.62
1
A
VAL
44
-145.46
-51.85
2
A
CYS
6
-74.84
-112.08
2
A
THR
7
-160.18
-158.20
2
A
CYS
9
-153.19
-55.85
2
A
CYS
39
-34.57
148.55
2
A
ASP
47
54.67
-68.53
3
A
CYS
6
-58.91
94.72
3
A
TYR
11
-150.82
66.13
3
A
ILE
12
-37.79
125.19
3
A
CYS
39
-39.65
144.02
3
A
LEU
41
-149.32
35.87
3
A
CYS
42
-131.19
-47.41
3
A
ASP
47
21.11
85.83
3
A
GLN
48
75.20
150.66
3
A
PHE
49
-171.02
109.44
4
A
LYS
2
62.54
162.00
4
A
CYS
6
-77.56
47.45
4
A
THR
7
43.39
-124.27
4
A
CYS
9
-133.00
-70.04
4
A
TYR
11
-131.91
-57.63
4
A
ILE
12
75.17
119.15
4
A
VAL
44
48.07
-149.39
4
A
ASP
47
-158.43
-63.59
5
A
LYS
2
60.15
168.36
5
A
VAL
8
-123.34
-65.15
5
A
CYS
9
-94.56
-60.53
5
A
VAL
44
78.84
123.35
5
A
LYS
46
53.87
74.05
5
A
ASP
47
-152.59
-69.67
6
A
THR
7
-69.28
81.02
6
A
VAL
8
66.98
-74.88
6
A
CYS
9
43.05
-122.68
6
A
ASP
19
-151.87
63.94
6
A
CYS
42
-142.67
-68.19
6
A
LYS
46
-148.55
33.89
7
A
LYS
2
62.18
171.60
7
A
VAL
8
-140.50
24.22
7
A
TYR
11
21.00
65.27
7
A
LEU
41
68.80
-62.31
8
A
LYS
2
54.64
173.38
8
A
VAL
8
-148.57
16.20
8
A
ILE
12
71.32
128.06
8
A
LYS
46
62.38
-88.02
8
A
ASP
47
46.83
-72.48
9
A
LYS
2
64.04
167.82
9
A
THR
7
53.84
-94.41
9
A
TYR
11
-134.88
-57.76
9
A
ILE
12
75.22
121.25
9
A
VAL
44
-143.58
-73.23
9
A
ASP
47
30.09
-93.74
9
A
GLN
48
-150.34
64.84
9
A
PHE
49
-45.72
156.12
10
A
LYS
2
57.79
174.94
10
A
THR
7
-76.40
-74.18
10
A
VAL
44
-99.50
-71.20
10
A
ASP
47
-163.54
-82.93
10
A
PHE
49
49.32
92.43
11
A
LYS
2
62.60
167.47
11
A
THR
7
-25.84
-82.36
11
A
CYS
9
-141.09
-78.09
11
A
LEU
41
70.19
43.54
11
A
LYS
46
58.57
78.32
11
A
ASP
47
-153.81
-99.68
12
A
LYS
2
59.73
170.29
12
A
THR
7
65.64
-72.37
12
A
TYR
11
22.19
63.88
12
A
PRO
40
-69.60
95.81
12
A
LEU
41
85.42
59.11
12
A
CYS
42
-147.22
-94.67
12
A
ASP
47
-138.85
-65.84
13
A
LYS
2
62.47
165.33
13
A
CYS
6
-81.37
-121.01
13
A
THR
7
-160.49
-46.08
13
A
VAL
8
-104.65
-66.75
13
A
TYR
11
-65.76
87.21
13
A
ASP
47
29.26
-94.42
13
A
PHE
49
-47.73
156.26
14
A
LYS
2
66.09
162.34
14
A
THR
7
-41.60
-76.18
14
A
VAL
8
-99.70
48.50
14
A
CYS
9
-160.95
-60.95
14
A
LYS
46
59.50
101.78
14
A
ASP
47
-138.80
-75.73
14
A
GLN
48
-144.69
55.34
15
A
THR
7
-82.29
-99.26
15
A
GLN
48
-171.92
-38.66
16
A
VAL
8
-132.50
-60.54
16
A
CYS
9
-95.92
-89.31
16
A
CYS
42
-147.76
-57.61
16
A
GLN
48
-179.37
-30.06
16
A
GLU
53
-69.00
82.13
17
A
LYS
2
55.83
174.82
17
A
VAL
8
-153.35
35.91
17
A
CYS
9
-121.79
-65.25
17
A
CYS
42
-125.65
-97.83
17
A
VAL
44
76.94
-173.20
17
A
ASP
47
-159.45
-75.49
17
A
PHE
49
53.15
173.47
18
A
LYS
2
66.32
164.38
18
A
THR
7
76.14
-62.46
18
A
VAL
8
-78.79
43.72
18
A
CYS
9
177.05
-102.49
18
A
ILE
12
79.84
110.73
18
A
LEU
41
-150.80
51.50
18
A
CYS
42
-142.84
-64.68
18
A
VAL
44
61.77
-83.65
18
A
GLN
48
36.93
47.02
19
A
LYS
2
62.09
165.76
19
A
VAL
8
-160.98
-32.74
19
A
CYS
42
-162.90
-66.79
20
A
ILE
12
69.64
113.01
20
A
ASP
47
69.59
-63.24
model building
DYANA
model building
XWINNMR
refinement
DYANA
refinement
XWINNMR
SOLUTION STRUCTURE OF REDUCED CLOSTRIDIUM PASTEURIANUM RUBREDOXIN, NMR, 20 STRUCTURES
1
Y
N
2
N
N
metalc
2.304
A
CYS
6
A
SG
CYS
6
1_555
A
FE
55
B
FE
FE
1_555
metalc
2.226
A
CYS
9
A
SG
CYS
9
1_555
A
FE
55
B
FE
FE
1_555
metalc
2.253
A
CYS
39
A
SG
CYS
39
1_555
A
FE
55
B
FE
FE
1_555
metalc
2.247
A
CYS
42
A
SG
CYS
42
1_555
A
FE
55
B
FE
FE
1_555
ELECTRON TRANSPORT
ELECTRON TRANSPORT, RUBREDOXIN, SOLUTION STRUCTURE, PARAMAGNETISM, NUCLEAR RELAXATION
RUBR_CLOPA
UNP
1
1
P00268
MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEE
1
54
1BFY
1
54
P00268
A
1
1
54
2
anti-parallel
A
LYS
3
A
LYS
3
A
TYR
4
A
TYR
4
A
GLU
51
A
GLU
51
A
VAL
52
A
VAL
52
IRON BINDING SITE.
Unknown
4
BINDING SITE FOR RESIDUE FE A 55
A
FE
55
Software
4
A
CYS
6
A
CYS
6
4
1_555
A
CYS
9
A
CYS
9
4
1_555
A
CYS
39
A
CYS
39
4
1_555
A
CYS
42
A
CYS
42
4
1_555
A
CYS
6
A
CYS
6
4
1_555
A
CYS
9
A
CYS
9
4
1_555
A
CYS
39
A
CYS
39
4
1_555
A
CYS
42
A
CYS
42
4
1_555
1
P 1