0.011711
0.000000
0.000000
0.000000
0.005740
0.000000
0.000000
0.000000
0.022366
0.00000
0.00000
0.00000
Pattanayek, R.
Newcomer, M.E.
Wagner, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
85.390
174.210
44.710
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Protein Sci.
PRCIEI
0795
0961-8368
7
1326
1331
9655336
Crystal structure of apo-glycine N-methyltransferase (GNMT).
1998
10.2210/pdb1bhj/pdb
pdb_00001bhj
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
108
1
MIRRORS
IMAGE PLATE
1995-06
RIGAKU
NI FILTER
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH2R
APO FORM
32460.830
GLYCINE N-METHYLTRANSFERASE
2.1.1.20
2
man
polymer
18.015
water
105
nat
water
GNMT, FOLATE BINDING PROTEIN
no
no
VDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFS
VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNI
ASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRL
SYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG
VDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFS
VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNI
ASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRL
SYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway rat
Rattus
Escherichia
Escherichia coli
sample
BL21
10116
Rattus norvegicus
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PRSET
1
2.7
54.0
6.8
pH 6.8
database_2
pdbx_database_status
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Database references
Other
Refinement description
1
0
1999-01-06
1
1
2008-03-24
1
2
2011-07-13
1
3
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1998-06-09
REL
HOH
water
1XVA
PDB
experimental model
HOH
1
2
HOH
HOH
293
A
HOH
2
2
HOH
HOH
294
A
HOH
3
2
HOH
HOH
295
A
HOH
5
2
HOH
HOH
296
A
HOH
8
2
HOH
HOH
297
A
HOH
9
2
HOH
HOH
298
A
HOH
11
2
HOH
HOH
299
A
HOH
12
2
HOH
HOH
300
A
HOH
13
2
HOH
HOH
301
A
HOH
14
2
HOH
HOH
302
A
HOH
15
2
HOH
HOH
303
A
HOH
18
2
HOH
HOH
304
A
HOH
20
2
HOH
HOH
305
A
HOH
21
2
HOH
HOH
306
A
HOH
22
2
HOH
HOH
307
A
HOH
23
2
HOH
HOH
308
A
HOH
25
2
HOH
HOH
309
A
HOH
26
2
HOH
HOH
310
A
HOH
27
2
HOH
HOH
311
A
HOH
28
2
HOH
HOH
312
A
HOH
36
2
HOH
HOH
313
A
HOH
39
2
HOH
HOH
314
A
HOH
40
2
HOH
HOH
315
A
HOH
43
2
HOH
HOH
316
A
HOH
46
2
HOH
HOH
317
A
HOH
48
2
HOH
HOH
318
A
HOH
50
2
HOH
HOH
319
A
HOH
52
2
HOH
HOH
320
A
HOH
53
2
HOH
HOH
321
A
HOH
54
2
HOH
HOH
322
A
HOH
56
2
HOH
HOH
323
A
HOH
57
2
HOH
HOH
324
A
HOH
62
2
HOH
HOH
325
A
HOH
63
2
HOH
HOH
326
A
HOH
64
2
HOH
HOH
327
A
HOH
68
2
HOH
HOH
328
A
HOH
69
2
HOH
HOH
329
A
HOH
70
2
HOH
HOH
330
A
HOH
71
2
HOH
HOH
331
A
HOH
73
2
HOH
HOH
332
A
HOH
74
2
HOH
HOH
333
A
HOH
75
2
HOH
HOH
334
A
HOH
76
2
HOH
HOH
335
A
HOH
79
2
HOH
HOH
336
A
HOH
82
2
HOH
HOH
337
A
HOH
83
2
HOH
HOH
338
A
HOH
85
2
HOH
HOH
339
A
HOH
87
2
HOH
HOH
340
A
HOH
89
2
HOH
HOH
341
A
HOH
92
2
HOH
HOH
342
A
HOH
97
2
HOH
HOH
343
A
HOH
98
2
HOH
HOH
344
A
HOH
100
2
HOH
HOH
345
A
HOH
102
2
HOH
HOH
346
A
HOH
104
2
HOH
HOH
347
A
HOH
4
2
HOH
HOH
293
B
HOH
6
2
HOH
HOH
294
B
HOH
7
2
HOH
HOH
295
B
HOH
10
2
HOH
HOH
296
B
HOH
16
2
HOH
HOH
297
B
HOH
17
2
HOH
HOH
298
B
HOH
19
2
HOH
HOH
299
B
HOH
24
2
HOH
HOH
300
B
HOH
29
2
HOH
HOH
301
B
HOH
30
2
HOH
HOH
302
B
HOH
31
2
HOH
HOH
303
B
HOH
32
2
HOH
HOH
304
B
HOH
33
2
HOH
HOH
305
B
HOH
34
2
HOH
HOH
306
B
HOH
35
2
HOH
HOH
307
B
HOH
37
2
HOH
HOH
308
B
HOH
38
2
HOH
HOH
309
B
HOH
41
2
HOH
HOH
310
B
HOH
42
2
HOH
HOH
311
B
HOH
44
2
HOH
HOH
312
B
HOH
45
2
HOH
HOH
313
B
HOH
47
2
HOH
HOH
314
B
HOH
49
2
HOH
HOH
315
B
HOH
51
2
HOH
HOH
316
B
HOH
55
2
HOH
HOH
317
B
HOH
58
2
HOH
HOH
318
B
HOH
59
2
HOH
HOH
319
B
HOH
60
2
HOH
HOH
320
B
HOH
61
2
HOH
HOH
321
B
HOH
65
2
HOH
HOH
322
B
HOH
66
2
HOH
HOH
323
B
HOH
67
2
HOH
HOH
324
B
HOH
72
2
HOH
HOH
325
B
HOH
77
2
HOH
HOH
326
B
HOH
78
2
HOH
HOH
327
B
HOH
80
2
HOH
HOH
328
B
HOH
81
2
HOH
HOH
329
B
HOH
84
2
HOH
HOH
330
B
HOH
86
2
HOH
HOH
331
B
HOH
88
2
HOH
HOH
332
B
HOH
90
2
HOH
HOH
333
B
HOH
91
2
HOH
HOH
334
B
HOH
93
2
HOH
HOH
335
B
HOH
94
2
HOH
HOH
336
B
HOH
95
2
HOH
HOH
337
B
HOH
96
2
HOH
HOH
338
B
HOH
99
2
HOH
HOH
339
B
HOH
101
2
HOH
HOH
340
B
HOH
103
2
HOH
HOH
341
B
HOH
105
2
HOH
HOH
342
B
VAL
1
n
1
VAL
1
A
ASP
2
n
2
ASP
2
A
SER
3
n
3
SER
3
A
VAL
4
n
4
VAL
4
A
TYR
5
n
5
TYR
5
A
ARG
6
n
6
ARG
6
A
THR
7
n
7
THR
7
A
ARG
8
n
8
ARG
8
A
SER
9
n
9
SER
9
A
LEU
10
n
10
LEU
10
A
GLY
11
n
11
GLY
11
A
VAL
12
n
12
VAL
12
A
ALA
13
n
13
ALA
13
A
ALA
14
n
14
ALA
14
A
GLU
15
n
15
GLU
15
A
GLY
16
n
16
GLY
16
A
ILE
17
n
17
ILE
17
A
PRO
18
n
18
PRO
18
A
ASP
19
n
19
ASP
19
A
GLN
20
n
20
GLN
20
A
TYR
21
n
21
TYR
21
A
ALA
22
n
22
ALA
22
A
ASP
23
n
23
ASP
23
A
GLY
24
n
24
GLY
24
A
GLU
25
n
25
GLU
25
A
ALA
26
n
26
ALA
26
A
ALA
27
n
27
ALA
27
A
ARG
28
n
28
ARG
28
A
VAL
29
n
29
VAL
29
A
TRP
30
n
30
TRP
30
A
GLN
31
n
31
GLN
31
A
LEU
32
n
32
LEU
32
A
TYR
33
n
33
TYR
33
A
ILE
34
n
34
ILE
34
A
GLY
35
n
35
GLY
35
A
ASP
36
n
36
ASP
36
A
THR
37
n
37
THR
37
A
ARG
38
n
38
ARG
38
A
SER
39
n
39
SER
39
A
ARG
40
n
40
ARG
40
A
THR
41
n
41
THR
41
A
ALA
42
n
42
ALA
42
A
GLU
43
n
43
GLU
43
A
TYR
44
n
44
TYR
44
A
LYS
45
n
45
LYS
45
A
ALA
46
n
46
ALA
46
A
TRP
47
n
47
TRP
47
A
LEU
48
n
48
LEU
48
A
LEU
49
n
49
LEU
49
A
GLY
50
n
50
GLY
50
A
LEU
51
n
51
LEU
51
A
LEU
52
n
52
LEU
52
A
ARG
53
n
53
ARG
53
A
GLN
54
n
54
GLN
54
A
HIS
55
n
55
HIS
55
A
GLY
56
n
56
GLY
56
A
CYS
57
n
57
CYS
57
A
HIS
58
n
58
HIS
58
A
ARG
59
n
59
ARG
59
A
VAL
60
n
60
VAL
60
A
LEU
61
n
61
LEU
61
A
ASP
62
n
62
ASP
62
A
VAL
63
n
63
VAL
63
A
ALA
64
n
64
ALA
64
A
CYS
65
n
65
CYS
65
A
GLY
66
n
66
GLY
66
A
THR
67
n
67
THR
67
A
GLY
68
n
68
GLY
68
A
VAL
69
n
69
VAL
69
A
ASP
70
n
70
ASP
70
A
SER
71
n
71
SER
71
A
ILE
72
n
72
ILE
72
A
MET
73
n
73
MET
73
A
LEU
74
n
74
LEU
74
A
VAL
75
n
75
VAL
75
A
GLU
76
n
76
GLU
76
A
GLU
77
n
77
GLU
77
A
GLY
78
n
78
GLY
78
A
PHE
79
n
79
PHE
79
A
SER
80
n
80
SER
80
A
VAL
81
n
81
VAL
81
A
THR
82
n
82
THR
82
A
SER
83
n
83
SER
83
A
VAL
84
n
84
VAL
84
A
ASP
85
n
85
ASP
85
A
ALA
86
n
86
ALA
86
A
SER
87
n
87
SER
87
A
ASP
88
n
88
ASP
88
A
LYS
89
n
89
LYS
89
A
MET
90
n
90
MET
90
A
LEU
91
n
91
LEU
91
A
LYS
92
n
92
LYS
92
A
TYR
93
n
93
TYR
93
A
ALA
94
n
94
ALA
94
A
LEU
95
n
95
LEU
95
A
LYS
96
n
96
LYS
96
A
GLU
97
n
97
GLU
97
A
ARG
98
n
98
ARG
98
A
TRP
99
n
99
TRP
99
A
ASN
100
n
100
ASN
100
A
ARG
101
n
101
ARG
101
A
ARG
102
n
102
ARG
102
A
LYS
103
n
103
LYS
103
A
GLU
104
n
104
GLU
104
A
PRO
105
n
105
PRO
105
A
ALA
106
n
106
ALA
106
A
PHE
107
n
107
PHE
107
A
ASP
108
n
108
ASP
108
A
LYS
109
n
109
LYS
109
A
TRP
110
n
110
TRP
110
A
VAL
111
n
111
VAL
111
A
ILE
112
n
112
ILE
112
A
GLU
113
n
113
GLU
113
A
GLU
114
n
114
GLU
114
A
ALA
115
n
115
ALA
115
A
ASN
116
n
116
ASN
116
A
TRP
117
n
117
TRP
117
A
LEU
118
n
118
LEU
118
A
THR
119
n
119
THR
119
A
LEU
120
n
120
LEU
120
A
ASP
121
n
121
ASP
121
A
LYS
122
n
122
LYS
122
A
ASP
123
n
123
ASP
123
A
VAL
124
n
124
VAL
124
A
PRO
125
n
125
PRO
125
A
ALA
126
n
126
ALA
126
A
GLY
127
n
127
GLY
127
A
ASP
128
n
128
ASP
128
A
GLY
129
n
129
GLY
129
A
PHE
130
n
130
PHE
130
A
ASP
131
n
131
ASP
131
A
ALA
132
n
132
ALA
132
A
VAL
133
n
133
VAL
133
A
ILE
134
n
134
ILE
134
A
CYS
135
n
135
CYS
135
A
LEU
136
n
136
LEU
136
A
GLY
137
n
137
GLY
137
A
ASN
138
n
138
ASN
138
A
SER
139
n
139
SER
139
A
PHE
140
n
140
PHE
140
A
ALA
141
n
141
ALA
141
A
HIS
142
n
142
HIS
142
A
LEU
143
n
143
LEU
143
A
PRO
144
n
144
PRO
144
A
ASP
145
n
145
ASP
145
A
SER
146
n
146
SER
146
A
LYS
147
n
147
LYS
147
A
GLY
148
n
148
GLY
148
A
ASP
149
n
149
ASP
149
A
GLN
150
n
150
GLN
150
A
SER
151
n
151
SER
151
A
GLU
152
n
152
GLU
152
A
HIS
153
n
153
HIS
153
A
ARG
154
n
154
ARG
154
A
LEU
155
n
155
LEU
155
A
ALA
156
n
156
ALA
156
A
LEU
157
n
157
LEU
157
A
LYS
158
n
158
LYS
158
A
ASN
159
n
159
ASN
159
A
ILE
160
n
160
ILE
160
A
ALA
161
n
161
ALA
161
A
SER
162
n
162
SER
162
A
MET
163
n
163
MET
163
A
VAL
164
n
164
VAL
164
A
ARG
165
n
165
ARG
165
A
PRO
166
n
166
PRO
166
A
GLY
167
n
167
GLY
167
A
GLY
168
n
168
GLY
168
A
LEU
169
n
169
LEU
169
A
LEU
170
n
170
LEU
170
A
VAL
171
n
171
VAL
171
A
ILE
172
n
172
ILE
172
A
ASP
173
n
173
ASP
173
A
HIS
174
n
174
HIS
174
A
ARG
175
n
175
ARG
175
A
ASN
176
n
176
ASN
176
A
TYR
177
n
177
TYR
177
A
ASP
178
n
178
ASP
178
A
TYR
179
n
179
TYR
179
A
ILE
180
n
180
ILE
180
A
LEU
181
n
181
LEU
181
A
SER
182
n
182
SER
182
A
THR
183
n
183
THR
183
A
GLY
184
n
184
GLY
184
A
CYS
185
n
185
CYS
185
A
ALA
186
n
186
ALA
186
A
PRO
187
n
187
PRO
187
A
PRO
188
n
188
PRO
188
A
GLY
189
n
189
GLY
189
A
LYS
190
n
190
LYS
190
A
ASN
191
n
191
ASN
191
A
ILE
192
n
192
ILE
192
A
TYR
193
n
193
TYR
193
A
TYR
194
n
194
TYR
194
A
LYS
195
n
195
LYS
195
A
SER
196
n
196
SER
196
A
ASP
197
n
197
ASP
197
A
LEU
198
n
198
LEU
198
A
THR
199
n
199
THR
199
A
LYS
200
n
200
LYS
200
A
ASP
201
n
201
ASP
201
A
ILE
202
n
202
ILE
202
A
THR
203
n
203
THR
203
A
THR
204
n
204
THR
204
A
SER
205
n
205
SER
205
A
VAL
206
n
206
VAL
206
A
LEU
207
n
207
LEU
207
A
THR
208
n
208
THR
208
A
VAL
209
n
209
VAL
209
A
ASN
210
n
210
ASN
210
A
ASN
211
n
211
ASN
211
A
LYS
212
n
212
LYS
212
A
ALA
213
n
213
ALA
213
A
HIS
214
n
214
HIS
214
A
MET
215
n
215
MET
215
A
VAL
216
n
216
VAL
216
A
THR
217
n
217
THR
217
A
LEU
218
n
218
LEU
218
A
ASP
219
n
219
ASP
219
A
TYR
220
n
220
TYR
220
A
THR
221
n
221
THR
221
A
VAL
222
n
222
VAL
222
A
GLN
223
n
223
GLN
223
A
VAL
224
n
224
VAL
224
A
PRO
225
n
225
PRO
225
A
GLY
226
n
226
GLY
226
A
ALA
227
n
227
ALA
227
A
GLY
228
n
228
GLY
228
A
ARG
229
n
229
ARG
229
A
ASP
230
n
230
ASP
230
A
GLY
231
n
231
GLY
231
A
ALA
232
n
232
ALA
232
A
PRO
233
n
233
PRO
233
A
GLY
234
n
234
GLY
234
A
PHE
235
n
235
PHE
235
A
SER
236
n
236
SER
236
A
LYS
237
n
237
LYS
237
A
PHE
238
n
238
PHE
238
A
ARG
239
n
239
ARG
239
A
LEU
240
n
240
LEU
240
A
SER
241
n
241
SER
241
A
TYR
242
n
242
TYR
242
A
TYR
243
n
243
TYR
243
A
PRO
244
n
244
PRO
244
A
HIS
245
n
245
HIS
245
A
CYS
246
n
246
CYS
246
A
LEU
247
n
247
LEU
247
A
ALA
248
n
248
ALA
248
A
SER
249
n
249
SER
249
A
PHE
250
n
250
PHE
250
A
THR
251
n
251
THR
251
A
GLU
252
n
252
GLU
252
A
LEU
253
n
253
LEU
253
A
VAL
254
n
254
VAL
254
A
GLN
255
n
255
GLN
255
A
GLU
256
n
256
GLU
256
A
ALA
257
n
257
ALA
257
A
PHE
258
n
258
PHE
258
A
GLY
259
n
259
GLY
259
A
GLY
260
n
260
GLY
260
A
ARG
261
n
261
ARG
261
A
CYS
262
n
262
CYS
262
A
GLN
263
n
263
GLN
263
A
HIS
264
n
264
HIS
264
A
SER
265
n
265
SER
265
A
VAL
266
n
266
VAL
266
A
LEU
267
n
267
LEU
267
A
GLY
268
n
268
GLY
268
A
ASP
269
n
269
ASP
269
A
PHE
270
n
270
PHE
270
A
LYS
271
n
271
LYS
271
A
PRO
272
n
272
PRO
272
A
TYR
273
n
273
TYR
273
A
ARG
274
n
274
ARG
274
A
PRO
275
n
275
PRO
275
A
GLY
276
n
276
GLY
276
A
GLN
277
n
277
GLN
277
A
ALA
278
n
278
ALA
278
A
TYR
279
n
279
TYR
279
A
VAL
280
n
280
VAL
280
A
PRO
281
n
281
PRO
281
A
CYS
282
n
282
CYS
282
A
TYR
283
n
283
TYR
283
A
PHE
284
n
284
PHE
284
A
ILE
285
n
285
ILE
285
A
HIS
286
n
286
HIS
286
A
VAL
287
n
287
VAL
287
A
LEU
288
n
288
LEU
288
A
LYS
289
n
289
LYS
289
A
LYS
290
n
290
LYS
290
A
THR
291
n
291
THR
291
A
GLY
292
n
292
GLY
292
A
VAL
1
n
1
VAL
1
B
ASP
2
n
2
ASP
2
B
SER
3
n
3
SER
3
B
VAL
4
n
4
VAL
4
B
TYR
5
n
5
TYR
5
B
ARG
6
n
6
ARG
6
B
THR
7
n
7
THR
7
B
ARG
8
n
8
ARG
8
B
SER
9
n
9
SER
9
B
LEU
10
n
10
LEU
10
B
GLY
11
n
11
GLY
11
B
VAL
12
n
12
VAL
12
B
ALA
13
n
13
ALA
13
B
ALA
14
n
14
ALA
14
B
GLU
15
n
15
GLU
15
B
GLY
16
n
16
GLY
16
B
ILE
17
n
17
ILE
17
B
PRO
18
n
18
PRO
18
B
ASP
19
n
19
ASP
19
B
GLN
20
n
20
GLN
20
B
TYR
21
n
21
TYR
21
B
ALA
22
n
22
ALA
22
B
ASP
23
n
23
ASP
23
B
GLY
24
n
24
GLY
24
B
GLU
25
n
25
GLU
25
B
ALA
26
n
26
ALA
26
B
ALA
27
n
27
ALA
27
B
ARG
28
n
28
ARG
28
B
VAL
29
n
29
VAL
29
B
TRP
30
n
30
TRP
30
B
GLN
31
n
31
GLN
31
B
LEU
32
n
32
LEU
32
B
TYR
33
n
33
TYR
33
B
ILE
34
n
34
ILE
34
B
GLY
35
n
35
GLY
35
B
ASP
36
n
36
ASP
36
B
THR
37
n
37
THR
37
B
ARG
38
n
38
ARG
38
B
SER
39
n
39
SER
39
B
ARG
40
n
40
ARG
40
B
THR
41
n
41
THR
41
B
ALA
42
n
42
ALA
42
B
GLU
43
n
43
GLU
43
B
TYR
44
n
44
TYR
44
B
LYS
45
n
45
LYS
45
B
ALA
46
n
46
ALA
46
B
TRP
47
n
47
TRP
47
B
LEU
48
n
48
LEU
48
B
LEU
49
n
49
LEU
49
B
GLY
50
n
50
GLY
50
B
LEU
51
n
51
LEU
51
B
LEU
52
n
52
LEU
52
B
ARG
53
n
53
ARG
53
B
GLN
54
n
54
GLN
54
B
HIS
55
n
55
HIS
55
B
GLY
56
n
56
GLY
56
B
CYS
57
n
57
CYS
57
B
HIS
58
n
58
HIS
58
B
ARG
59
n
59
ARG
59
B
VAL
60
n
60
VAL
60
B
LEU
61
n
61
LEU
61
B
ASP
62
n
62
ASP
62
B
VAL
63
n
63
VAL
63
B
ALA
64
n
64
ALA
64
B
CYS
65
n
65
CYS
65
B
GLY
66
n
66
GLY
66
B
THR
67
n
67
THR
67
B
GLY
68
n
68
GLY
68
B
VAL
69
n
69
VAL
69
B
ASP
70
n
70
ASP
70
B
SER
71
n
71
SER
71
B
ILE
72
n
72
ILE
72
B
MET
73
n
73
MET
73
B
LEU
74
n
74
LEU
74
B
VAL
75
n
75
VAL
75
B
GLU
76
n
76
GLU
76
B
GLU
77
n
77
GLU
77
B
GLY
78
n
78
GLY
78
B
PHE
79
n
79
PHE
79
B
SER
80
n
80
SER
80
B
VAL
81
n
81
VAL
81
B
THR
82
n
82
THR
82
B
SER
83
n
83
SER
83
B
VAL
84
n
84
VAL
84
B
ASP
85
n
85
ASP
85
B
ALA
86
n
86
ALA
86
B
SER
87
n
87
SER
87
B
ASP
88
n
88
ASP
88
B
LYS
89
n
89
LYS
89
B
MET
90
n
90
MET
90
B
LEU
91
n
91
LEU
91
B
LYS
92
n
92
LYS
92
B
TYR
93
n
93
TYR
93
B
ALA
94
n
94
ALA
94
B
LEU
95
n
95
LEU
95
B
LYS
96
n
96
LYS
96
B
GLU
97
n
97
GLU
97
B
ARG
98
n
98
ARG
98
B
TRP
99
n
99
TRP
99
B
ASN
100
n
100
ASN
100
B
ARG
101
n
101
ARG
101
B
ARG
102
n
102
ARG
102
B
LYS
103
n
103
LYS
103
B
GLU
104
n
104
GLU
104
B
PRO
105
n
105
PRO
105
B
ALA
106
n
106
ALA
106
B
PHE
107
n
107
PHE
107
B
ASP
108
n
108
ASP
108
B
LYS
109
n
109
LYS
109
B
TRP
110
n
110
TRP
110
B
VAL
111
n
111
VAL
111
B
ILE
112
n
112
ILE
112
B
GLU
113
n
113
GLU
113
B
GLU
114
n
114
GLU
114
B
ALA
115
n
115
ALA
115
B
ASN
116
n
116
ASN
116
B
TRP
117
n
117
TRP
117
B
LEU
118
n
118
LEU
118
B
THR
119
n
119
THR
119
B
LEU
120
n
120
LEU
120
B
ASP
121
n
121
ASP
121
B
LYS
122
n
122
LYS
122
B
ASP
123
n
123
ASP
123
B
VAL
124
n
124
VAL
124
B
PRO
125
n
125
PRO
125
B
ALA
126
n
126
ALA
126
B
GLY
127
n
127
GLY
127
B
ASP
128
n
128
ASP
128
B
GLY
129
n
129
GLY
129
B
PHE
130
n
130
PHE
130
B
ASP
131
n
131
ASP
131
B
ALA
132
n
132
ALA
132
B
VAL
133
n
133
VAL
133
B
ILE
134
n
134
ILE
134
B
CYS
135
n
135
CYS
135
B
LEU
136
n
136
LEU
136
B
GLY
137
n
137
GLY
137
B
ASN
138
n
138
ASN
138
B
SER
139
n
139
SER
139
B
PHE
140
n
140
PHE
140
B
ALA
141
n
141
ALA
141
B
HIS
142
n
142
HIS
142
B
LEU
143
n
143
LEU
143
B
PRO
144
n
144
PRO
144
B
ASP
145
n
145
ASP
145
B
SER
146
n
146
SER
146
B
LYS
147
n
147
LYS
147
B
GLY
148
n
148
GLY
148
B
ASP
149
n
149
ASP
149
B
GLN
150
n
150
GLN
150
B
SER
151
n
151
SER
151
B
GLU
152
n
152
GLU
152
B
HIS
153
n
153
HIS
153
B
ARG
154
n
154
ARG
154
B
LEU
155
n
155
LEU
155
B
ALA
156
n
156
ALA
156
B
LEU
157
n
157
LEU
157
B
LYS
158
n
158
LYS
158
B
ASN
159
n
159
ASN
159
B
ILE
160
n
160
ILE
160
B
ALA
161
n
161
ALA
161
B
SER
162
n
162
SER
162
B
MET
163
n
163
MET
163
B
VAL
164
n
164
VAL
164
B
ARG
165
n
165
ARG
165
B
PRO
166
n
166
PRO
166
B
GLY
167
n
167
GLY
167
B
GLY
168
n
168
GLY
168
B
LEU
169
n
169
LEU
169
B
LEU
170
n
170
LEU
170
B
VAL
171
n
171
VAL
171
B
ILE
172
n
172
ILE
172
B
ASP
173
n
173
ASP
173
B
HIS
174
n
174
HIS
174
B
ARG
175
n
175
ARG
175
B
ASN
176
n
176
ASN
176
B
TYR
177
n
177
TYR
177
B
ASP
178
n
178
ASP
178
B
TYR
179
n
179
TYR
179
B
ILE
180
n
180
ILE
180
B
LEU
181
n
181
LEU
181
B
SER
182
n
182
SER
182
B
THR
183
n
183
THR
183
B
GLY
184
n
184
GLY
184
B
CYS
185
n
185
CYS
185
B
ALA
186
n
186
ALA
186
B
PRO
187
n
187
PRO
187
B
PRO
188
n
188
PRO
188
B
GLY
189
n
189
GLY
189
B
LYS
190
n
190
LYS
190
B
ASN
191
n
191
ASN
191
B
ILE
192
n
192
ILE
192
B
TYR
193
n
193
TYR
193
B
TYR
194
n
194
TYR
194
B
LYS
195
n
195
LYS
195
B
SER
196
n
196
SER
196
B
ASP
197
n
197
ASP
197
B
LEU
198
n
198
LEU
198
B
THR
199
n
199
THR
199
B
LYS
200
n
200
LYS
200
B
ASP
201
n
201
ASP
201
B
ILE
202
n
202
ILE
202
B
THR
203
n
203
THR
203
B
THR
204
n
204
THR
204
B
SER
205
n
205
SER
205
B
VAL
206
n
206
VAL
206
B
LEU
207
n
207
LEU
207
B
THR
208
n
208
THR
208
B
VAL
209
n
209
VAL
209
B
ASN
210
n
210
ASN
210
B
ASN
211
n
211
ASN
211
B
LYS
212
n
212
LYS
212
B
ALA
213
n
213
ALA
213
B
HIS
214
n
214
HIS
214
B
MET
215
n
215
MET
215
B
VAL
216
n
216
VAL
216
B
THR
217
n
217
THR
217
B
LEU
218
n
218
LEU
218
B
ASP
219
n
219
ASP
219
B
TYR
220
n
220
TYR
220
B
THR
221
n
221
THR
221
B
VAL
222
n
222
VAL
222
B
GLN
223
n
223
GLN
223
B
VAL
224
n
224
VAL
224
B
PRO
225
n
225
PRO
225
B
GLY
226
n
226
GLY
226
B
ALA
227
n
227
ALA
227
B
GLY
228
n
228
GLY
228
B
ARG
229
n
229
ARG
229
B
ASP
230
n
230
ASP
230
B
GLY
231
n
231
GLY
231
B
ALA
232
n
232
ALA
232
B
PRO
233
n
233
PRO
233
B
GLY
234
n
234
GLY
234
B
PHE
235
n
235
PHE
235
B
SER
236
n
236
SER
236
B
LYS
237
n
237
LYS
237
B
PHE
238
n
238
PHE
238
B
ARG
239
n
239
ARG
239
B
LEU
240
n
240
LEU
240
B
SER
241
n
241
SER
241
B
TYR
242
n
242
TYR
242
B
TYR
243
n
243
TYR
243
B
PRO
244
n
244
PRO
244
B
HIS
245
n
245
HIS
245
B
CYS
246
n
246
CYS
246
B
LEU
247
n
247
LEU
247
B
ALA
248
n
248
ALA
248
B
SER
249
n
249
SER
249
B
PHE
250
n
250
PHE
250
B
THR
251
n
251
THR
251
B
GLU
252
n
252
GLU
252
B
LEU
253
n
253
LEU
253
B
VAL
254
n
254
VAL
254
B
GLN
255
n
255
GLN
255
B
GLU
256
n
256
GLU
256
B
ALA
257
n
257
ALA
257
B
PHE
258
n
258
PHE
258
B
GLY
259
n
259
GLY
259
B
GLY
260
n
260
GLY
260
B
ARG
261
n
261
ARG
261
B
CYS
262
n
262
CYS
262
B
GLN
263
n
263
GLN
263
B
HIS
264
n
264
HIS
264
B
SER
265
n
265
SER
265
B
VAL
266
n
266
VAL
266
B
LEU
267
n
267
LEU
267
B
GLY
268
n
268
GLY
268
B
ASP
269
n
269
ASP
269
B
PHE
270
n
270
PHE
270
B
LYS
271
n
271
LYS
271
B
PRO
272
n
272
PRO
272
B
TYR
273
n
273
TYR
273
B
ARG
274
n
274
ARG
274
B
PRO
275
n
275
PRO
275
B
GLY
276
n
276
GLY
276
B
GLN
277
n
277
GLN
277
B
ALA
278
n
278
ALA
278
B
TYR
279
n
279
TYR
279
B
VAL
280
n
280
VAL
280
B
PRO
281
n
281
PRO
281
B
CYS
282
n
282
CYS
282
B
TYR
283
n
283
TYR
283
B
PHE
284
n
284
PHE
284
B
ILE
285
n
285
ILE
285
B
HIS
286
n
286
HIS
286
B
VAL
287
n
287
VAL
287
B
LEU
288
n
288
LEU
288
B
LYS
289
n
289
LYS
289
B
LYS
290
n
290
LYS
290
B
THR
291
n
291
THR
291
B
GLY
292
n
292
GLY
292
B
author_and_software_defined_assembly
PISA,PQS
4
tetrameric
12680
-58
48480
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_765
-x+2,-y+1,z
crystal symmetry operation
170.7800000000
174.2100000000
0.0000000000
A
O
SER
80
A
O
SER
80
A
N
VAL
60
A
N
VAL
60
A
O
LEU
61
A
O
LEU
61
A
N
ALA
132
A
N
ALA
132
A
O
VAL
133
A
O
VAL
133
A
N
LEU
169
A
N
LEU
169
A
O
LEU
170
A
O
LEU
170
A
N
LEU
288
A
N
LEU
288
A
O
ILE
285
A
O
ILE
285
A
N
LEU
267
A
N
LEU
267
A
O
GLY
234
A
O
GLY
234
A
N
VAL
224
A
N
VAL
224
A
O
LYS
212
A
O
LYS
212
A
N
VAL
209
A
N
VAL
209
B
O
PHE
284
B
O
PHE
284
B
N
HIS
174
B
N
HIS
174
B
O
LEU
169
B
O
LEU
169
B
N
VAL
133
B
N
VAL
133
B
O
ALA
132
B
O
ALA
132
B
N
LEU
61
B
N
LEU
61
B
O
VAL
60
B
O
VAL
60
B
N
SER
80
B
N
SER
80
B
O
SER
83
B
O
SER
83
B
N
VAL
111
B
N
VAL
111
B
O
GLY
234
B
O
GLY
234
B
N
VAL
224
B
N
VAL
224
B
O
LYS
212
B
O
LYS
212
B
N
VAL
209
B
N
VAL
209
1
A
ASP
2
-125.81
-146.18
1
A
SER
3
172.05
159.15
1
A
VAL
4
-160.89
68.64
1
A
GLN
20
-19.00
-80.01
1
A
ASP
36
-100.23
44.16
1
A
ARG
38
-63.35
96.45
1
A
SER
39
-165.68
60.29
1
A
ARG
40
-33.58
141.57
1
A
ALA
64
-141.73
48.54
1
A
CYS
65
-43.96
-70.33
1
A
LYS
92
-39.81
-31.29
1
A
LEU
120
-38.17
-35.32
1
A
ASP
123
-152.89
-35.34
1
A
CYS
135
-153.83
54.38
1
A
GLN
150
44.69
28.72
1
A
ASN
211
59.00
0.65
1
A
ALA
227
-60.87
22.09
1
A
ARG
229
-62.06
-98.36
1
A
ARG
261
-65.41
70.34
1
A
PHE
270
-141.72
-35.62
1
A
GLN
277
-29.38
147.14
1
B
ASP
2
-123.39
-151.41
1
B
SER
3
174.14
152.51
1
B
VAL
4
-158.05
59.32
1
B
GLN
20
-10.86
-92.68
1
B
ASP
36
-63.13
0.77
1
B
SER
39
171.33
35.03
1
B
ARG
40
-39.05
152.14
1
B
GLN
54
-39.54
-26.31
1
B
CYS
65
-37.77
-74.09
1
B
ASN
211
76.05
-21.21
1
B
ALA
227
-86.51
32.79
1
B
ARG
229
-52.04
-80.80
1
B
ASP
230
-113.13
64.72
1
B
PRO
244
-63.40
98.11
1
B
ARG
261
-66.59
68.54
1
B
SER
265
-170.91
132.24
1
B
PHE
270
-162.83
-18.38
1
B
PRO
275
-45.94
154.26
1
B
GLN
277
-36.31
134.79
PROTEIN_REP.PARAM
TOPHCSDX.PRO
33.24
0.3180000
0.2210000
0.2210000
2.5
8.0
1840
18688
10.0
78.7
RANDOM
100000.00
0.001
1
THROUGHOUT
2.0
RIGID BODY REFINEMENT
1XVA
2.5
8.0
105
4675
0
0
4570
0.007
1.325
27.77
0.3183000
0.2210000
2.61
184
1653
8
10.0
53.7
2.5
30
1BHJ
22481
2
0.1060000
1
10.59
2.7
93.8
2.50
2.54
2.73
0.4170000
1
2.5
87.0
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
3.1
CRYSTAL STRUCTURE OF APO-GLYCINE N-METHYLTRANSFERASE (GNMT)
1
N
N
1
N
N
2
N
N
2
N
N
A
GLU
25
A
GLU
25
HELX_P
A
LEU
32
A
LEU
32
1
1
8
A
ALA
42
A
ALA
42
HELX_P
A
GLN
54
A
GLN
54
1
2
13
A
SER
71
A
SER
71
HELX_P
A
GLU
76
A
GLU
76
1
3
6
A
ASP
88
A
ASP
88
HELX_P
A
ASN
100
A
ASN
100
1
4
13
A
PRO
105
A
PRO
105
HELX_P
A
LYS
109
A
LYS
109
1
5
5
A
LEU
120
A
LEU
120
HELX_P
A
LYS
122
A
LYS
122
5
6
3
A
SER
139
A
SER
139
HELX_P
A
HIS
142
A
HIS
142
5
7
4
A
SER
151
A
SER
151
HELX_P
A
SER
162
A
SER
162
1
8
12
A
TYR
177
A
TYR
177
HELX_P
A
THR
183
A
THR
183
1
9
7
A
LEU
247
A
LEU
247
HELX_P
A
PHE
258
A
PHE
258
1
10
12
B
GLU
25
B
GLU
25
HELX_P
B
TYR
33
B
TYR
33
1
11
9
B
ALA
42
B
ALA
42
HELX_P
B
HIS
55
B
HIS
55
1
12
14
B
VAL
69
B
VAL
69
HELX_P
B
GLU
76
B
GLU
76
1
13
8
B
ASP
88
B
ASP
88
HELX_P
B
LYS
103
B
LYS
103
1
14
16
B
PRO
105
B
PRO
105
HELX_P
B
LYS
109
B
LYS
109
1
15
5
B
LEU
120
B
LEU
120
HELX_P
B
LYS
122
B
LYS
122
5
16
3
B
SER
139
B
SER
139
HELX_P
B
HIS
142
B
HIS
142
5
17
4
B
SER
151
B
SER
151
HELX_P
B
MET
163
B
MET
163
1
18
13
B
TYR
177
B
TYR
177
HELX_P
B
THR
183
B
THR
183
1
19
7
B
LEU
247
B
LEU
247
HELX_P
B
PHE
258
B
PHE
258
1
20
12
METHYLTRANSFERASE
METHYLTRANSFERASE, FOLATE BINDING PROTEIN
GNMT_RAT
UNP
1
1
P13255
VDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFS
VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNI
ASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRL
SYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG
1
292
1BHJ
1
292
P13255
A
1
1
292
1
292
1BHJ
1
292
P13255
B
1
1
292
6
3
6
3
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
SER
80
A
SER
80
A
SER
83
A
SER
83
A
ARG
59
A
ARG
59
A
ASP
62
A
ASP
62
A
ALA
132
A
ALA
132
A
CYS
135
A
CYS
135
A
LEU
169
A
LEU
169
A
ARG
175
A
ARG
175
A
TYR
283
A
TYR
283
A
LYS
289
A
LYS
289
A
SER
265
A
SER
265
A
LEU
267
A
LEU
267
A
GLY
234
A
GLY
234
A
TYR
242
A
TYR
242
A
LYS
212
A
LYS
212
A
VAL
224
A
VAL
224
A
LYS
200
A
LYS
200
A
VAL
209
A
VAL
209
B
TYR
283
B
TYR
283
B
LYS
289
B
LYS
289
B
LEU
169
B
LEU
169
B
ARG
175
B
ARG
175
B
ALA
132
B
ALA
132
B
CYS
135
B
CYS
135
B
ARG
59
B
ARG
59
B
ASP
62
B
ASP
62
B
SER
80
B
SER
80
B
ASP
85
B
ASP
85
B
VAL
111
B
VAL
111
B
GLU
114
B
GLU
114
B
GLY
234
B
GLY
234
B
TYR
242
B
TYR
242
B
LYS
212
B
LYS
212
B
VAL
224
B
VAL
224
B
ILE
202
B
ILE
202
B
VAL
209
B
VAL
209
18
P 21 21 2