0.022178
-0.011481
-0.008281
0.000000
0.024979
-0.005248
0.000000
0.000000
0.022858
0.00000
0.00000
0.00000
Goldgur, Y.
Dyda, F.
Hickman, A.B.
Jenkins, T.M.
Craigie, R.
Davies, D.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
68.82
64.74
62.63
45.090
45.080
49.430
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
95
9150
9154
10.1073/pnas.95.16.9150
9689049
Three new structures of the core domain of HIV-1 integrase: an active site that binds magnesium.
1998
US
Science
SCIEAS
0038
0036-8075
266
1981
Crystal Structure of the Catalytic Domain of HIV-1 Integrase: Similarity to Other Polynucleotidyl Transferases
1994
10.2210/pdb1bis/pdb
pdb_00001bis
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
95
1
MIRRORS
IMAGE PLATE
1997-11
RIGAKU
NI FILTER
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH2R
18134.643
HIV-1 INTEGRASE
CORE DOMAIN
W131E, F185K
2
man
polymer
18.015
water
152
nat
water
no
no
GSHMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTV
KAACEWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIAT
DIQDIQ
GSHMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTV
KAACEWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIAT
DIQDIQ
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
Escherichia
Escherichia coli
sample
11676
Human immunodeficiency virus 1
469008
Escherichia coli BL21(DE3)
BL21
DE3
PET15B
1
2.18
43
7.0
PROTEIN WAS CRYSTALLIZED FROM 30% PEG 4000, 100 MM HEPES, PH 7.0, 5 MM DTT
database_2
pdbx_database_status
struct_ref_seq_dif
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Database references
Other
Refinement description
1
0
1998-08-19
1
1
2008-03-24
1
2
2011-07-13
1
3
2021-11-03
1
4
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_ref_seq_dif.details
Y
BNL
1998-06-19
REL
REL
HOH
water
1ITG
PDB ENTRY 1ITG
PDB
experimental model
HOH
234
2
HOH
HOH
234
A
HOH
263
2
HOH
HOH
263
A
HOH
271
2
HOH
HOH
271
A
HOH
291
2
HOH
HOH
291
A
HOH
315
2
HOH
HOH
315
A
HOH
317
2
HOH
HOH
317
A
HOH
323
2
HOH
HOH
323
A
HOH
337
2
HOH
HOH
337
A
HOH
340
2
HOH
HOH
340
A
HOH
348
2
HOH
HOH
348
A
HOH
353
2
HOH
HOH
353
A
HOH
355
2
HOH
HOH
355
A
HOH
358
2
HOH
HOH
358
A
HOH
361
2
HOH
HOH
361
A
HOH
364
2
HOH
HOH
364
A
HOH
366
2
HOH
HOH
366
A
HOH
381
2
HOH
HOH
381
A
HOH
389
2
HOH
HOH
389
A
HOH
400
2
HOH
HOH
400
A
HOH
412
2
HOH
HOH
412
A
HOH
421
2
HOH
HOH
421
A
HOH
422
2
HOH
HOH
422
A
HOH
446
2
HOH
HOH
446
A
HOH
449
2
HOH
HOH
449
A
HOH
462
2
HOH
HOH
462
A
HOH
469
2
HOH
HOH
469
A
HOH
483
2
HOH
HOH
483
A
HOH
490
2
HOH
HOH
490
A
HOH
508
2
HOH
HOH
508
A
HOH
525
2
HOH
HOH
525
A
HOH
526
2
HOH
HOH
526
A
HOH
531
2
HOH
HOH
531
A
HOH
537
2
HOH
HOH
537
A
HOH
554
2
HOH
HOH
554
A
HOH
556
2
HOH
HOH
556
A
HOH
562
2
HOH
HOH
562
A
HOH
575
2
HOH
HOH
575
A
HOH
578
2
HOH
HOH
578
A
HOH
591
2
HOH
HOH
591
A
HOH
594
2
HOH
HOH
594
A
HOH
609
2
HOH
HOH
609
A
HOH
611
2
HOH
HOH
611
A
HOH
629
2
HOH
HOH
629
A
HOH
637
2
HOH
HOH
637
A
HOH
649
2
HOH
HOH
649
A
HOH
671
2
HOH
HOH
671
A
HOH
688
2
HOH
HOH
688
A
HOH
709
2
HOH
HOH
709
A
HOH
724
2
HOH
HOH
724
A
HOH
727
2
HOH
HOH
727
A
HOH
729
2
HOH
HOH
729
A
HOH
741
2
HOH
HOH
741
A
HOH
759
2
HOH
HOH
759
A
HOH
771
2
HOH
HOH
771
A
HOH
792
2
HOH
HOH
792
A
HOH
804
2
HOH
HOH
804
A
HOH
812
2
HOH
HOH
812
A
HOH
815
2
HOH
HOH
815
A
HOH
817
2
HOH
HOH
817
A
HOH
821
2
HOH
HOH
821
A
HOH
841
2
HOH
HOH
841
A
HOH
856
2
HOH
HOH
856
A
HOH
865
2
HOH
HOH
865
A
HOH
880
2
HOH
HOH
880
A
HOH
883
2
HOH
HOH
883
A
HOH
904
2
HOH
HOH
904
A
HOH
906
2
HOH
HOH
906
A
HOH
922
2
HOH
HOH
922
A
HOH
930
2
HOH
HOH
930
A
HOH
933
2
HOH
HOH
933
A
HOH
937
2
HOH
HOH
937
A
HOH
951
2
HOH
HOH
951
A
HOH
962
2
HOH
HOH
962
A
HOH
963
2
HOH
HOH
963
A
HOH
968
2
HOH
HOH
968
A
HOH
975
2
HOH
HOH
975
A
HOH
977
2
HOH
HOH
977
A
HOH
987
2
HOH
HOH
987
A
HOH
996
2
HOH
HOH
996
A
HOH
1030
2
HOH
HOH
1030
A
HOH
367
2
HOH
HOH
367
B
HOH
377
2
HOH
HOH
377
B
HOH
394
2
HOH
HOH
394
B
HOH
396
2
HOH
HOH
396
B
HOH
430
2
HOH
HOH
430
B
HOH
432
2
HOH
HOH
432
B
HOH
437
2
HOH
HOH
437
B
HOH
443
2
HOH
HOH
443
B
HOH
447
2
HOH
HOH
447
B
HOH
454
2
HOH
HOH
454
B
HOH
456
2
HOH
HOH
456
B
HOH
458
2
HOH
HOH
458
B
HOH
467
2
HOH
HOH
467
B
HOH
470
2
HOH
HOH
470
B
HOH
509
2
HOH
HOH
509
B
HOH
511
2
HOH
HOH
511
B
HOH
513
2
HOH
HOH
513
B
HOH
538
2
HOH
HOH
538
B
HOH
539
2
HOH
HOH
539
B
HOH
543
2
HOH
HOH
543
B
HOH
549
2
HOH
HOH
549
B
HOH
581
2
HOH
HOH
581
B
HOH
595
2
HOH
HOH
595
B
HOH
660
2
HOH
HOH
660
B
HOH
669
2
HOH
HOH
669
B
HOH
670
2
HOH
HOH
670
B
HOH
672
2
HOH
HOH
672
B
HOH
689
2
HOH
HOH
689
B
HOH
695
2
HOH
HOH
695
B
HOH
699
2
HOH
HOH
699
B
HOH
701
2
HOH
HOH
701
B
HOH
707
2
HOH
HOH
707
B
HOH
710
2
HOH
HOH
710
B
HOH
738
2
HOH
HOH
738
B
HOH
756
2
HOH
HOH
756
B
HOH
764
2
HOH
HOH
764
B
HOH
773
2
HOH
HOH
773
B
HOH
776
2
HOH
HOH
776
B
HOH
788
2
HOH
HOH
788
B
HOH
790
2
HOH
HOH
790
B
HOH
805
2
HOH
HOH
805
B
HOH
816
2
HOH
HOH
816
B
HOH
844
2
HOH
HOH
844
B
HOH
863
2
HOH
HOH
863
B
HOH
878
2
HOH
HOH
878
B
HOH
884
2
HOH
HOH
884
B
HOH
893
2
HOH
HOH
893
B
HOH
925
2
HOH
HOH
925
B
HOH
927
2
HOH
HOH
927
B
HOH
931
2
HOH
HOH
931
B
HOH
934
2
HOH
HOH
934
B
HOH
938
2
HOH
HOH
938
B
HOH
948
2
HOH
HOH
948
B
HOH
952
2
HOH
HOH
952
B
HOH
960
2
HOH
HOH
960
B
HOH
973
2
HOH
HOH
973
B
HOH
984
2
HOH
HOH
984
B
HOH
1005
2
HOH
HOH
1005
B
HOH
1012
2
HOH
HOH
1012
B
HOH
1019
2
HOH
HOH
1019
B
HOH
1023
2
HOH
HOH
1023
B
HOH
1027
2
HOH
HOH
1027
B
HOH
1031
2
HOH
HOH
1031
B
HOH
1035
2
HOH
HOH
1035
B
HOH
1037
2
HOH
HOH
1037
B
HOH
1038
2
HOH
HOH
1038
B
HOH
1044
2
HOH
HOH
1044
B
HOH
1051
2
HOH
HOH
1051
B
HOH
1059
2
HOH
HOH
1059
B
HOH
1064
2
HOH
HOH
1064
B
HOH
1070
2
HOH
HOH
1070
B
HOH
1078
2
HOH
HOH
1078
B
n
1
47
A
n
2
48
A
n
3
49
A
n
4
50
A
n
5
51
A
n
6
52
A
n
7
53
A
n
8
54
A
n
9
55
A
CYS
56
n
10
CYS
56
A
SER
57
n
11
SER
57
A
PRO
58
n
12
PRO
58
A
GLY
59
n
13
GLY
59
A
ILE
60
n
14
ILE
60
A
TRP
61
n
15
TRP
61
A
GLN
62
n
16
GLN
62
A
LEU
63
n
17
LEU
63
A
ASP
64
n
18
ASP
64
A
CYS
65
n
19
CYS
65
A
THR
66
n
20
THR
66
A
HIS
67
n
21
HIS
67
A
LEU
68
n
22
LEU
68
A
GLU
69
n
23
GLU
69
A
GLY
70
n
24
GLY
70
A
LYS
71
n
25
LYS
71
A
VAL
72
n
26
VAL
72
A
ILE
73
n
27
ILE
73
A
LEU
74
n
28
LEU
74
A
VAL
75
n
29
VAL
75
A
ALA
76
n
30
ALA
76
A
VAL
77
n
31
VAL
77
A
HIS
78
n
32
HIS
78
A
VAL
79
n
33
VAL
79
A
ALA
80
n
34
ALA
80
A
SER
81
n
35
SER
81
A
GLY
82
n
36
GLY
82
A
TYR
83
n
37
TYR
83
A
ILE
84
n
38
ILE
84
A
GLU
85
n
39
GLU
85
A
ALA
86
n
40
ALA
86
A
GLU
87
n
41
GLU
87
A
VAL
88
n
42
VAL
88
A
ILE
89
n
43
ILE
89
A
PRO
90
n
44
PRO
90
A
ALA
91
n
45
ALA
91
A
GLU
92
n
46
GLU
92
A
THR
93
n
47
THR
93
A
GLY
94
n
48
GLY
94
A
GLN
95
n
49
GLN
95
A
GLU
96
n
50
GLU
96
A
THR
97
n
51
THR
97
A
ALA
98
n
52
ALA
98
A
TYR
99
n
53
TYR
99
A
PHE
100
n
54
PHE
100
A
LEU
101
n
55
LEU
101
A
LEU
102
n
56
LEU
102
A
LYS
103
n
57
LYS
103
A
LEU
104
n
58
LEU
104
A
ALA
105
n
59
ALA
105
A
GLY
106
n
60
GLY
106
A
ARG
107
n
61
ARG
107
A
TRP
108
n
62
TRP
108
A
PRO
109
n
63
PRO
109
A
VAL
110
n
64
VAL
110
A
LYS
111
n
65
LYS
111
A
THR
112
n
66
THR
112
A
VAL
113
n
67
VAL
113
A
HIS
114
n
68
HIS
114
A
THR
115
n
69
THR
115
A
ASP
116
n
70
ASP
116
A
ASN
117
n
71
ASN
117
A
GLY
118
n
72
GLY
118
A
SER
119
n
73
SER
119
A
ASN
120
n
74
ASN
120
A
PHE
121
n
75
PHE
121
A
THR
122
n
76
THR
122
A
SER
123
n
77
SER
123
A
THR
124
n
78
THR
124
A
THR
125
n
79
THR
125
A
VAL
126
n
80
VAL
126
A
LYS
127
n
81
LYS
127
A
ALA
128
n
82
ALA
128
A
ALA
129
n
83
ALA
129
A
CYS
130
n
84
CYS
130
A
GLU
131
n
85
GLU
131
A
TRP
132
n
86
TRP
132
A
ALA
133
n
87
ALA
133
A
GLY
134
n
88
GLY
134
A
ILE
135
n
89
ILE
135
A
LYS
136
n
90
LYS
136
A
GLN
137
n
91
GLN
137
A
GLU
138
n
92
GLU
138
A
PHE
139
n
93
PHE
139
A
GLY
140
n
94
GLY
140
A
ILE
141
n
95
ILE
141
A
PRO
142
n
96
PRO
142
A
n
97
143
A
n
98
144
A
n
99
145
A
n
100
146
A
n
101
147
A
n
102
148
A
n
103
149
A
n
104
150
A
ILE
151
n
105
ILE
151
A
GLU
152
n
106
GLU
152
A
SER
153
n
107
SER
153
A
MET
154
n
108
MET
154
A
ASN
155
n
109
ASN
155
A
LYS
156
n
110
LYS
156
A
GLU
157
n
111
GLU
157
A
LEU
158
n
112
LEU
158
A
LYS
159
n
113
LYS
159
A
LYS
160
n
114
LYS
160
A
ILE
161
n
115
ILE
161
A
ILE
162
n
116
ILE
162
A
GLY
163
n
117
GLY
163
A
GLN
164
n
118
GLN
164
A
VAL
165
n
119
VAL
165
A
ARG
166
n
120
ARG
166
A
ASP
167
n
121
ASP
167
A
GLN
168
n
122
GLN
168
A
ALA
169
n
123
ALA
169
A
GLU
170
n
124
GLU
170
A
HIS
171
n
125
HIS
171
A
LEU
172
n
126
LEU
172
A
LYS
173
n
127
LYS
173
A
THR
174
n
128
THR
174
A
ALA
175
n
129
ALA
175
A
VAL
176
n
130
VAL
176
A
GLN
177
n
131
GLN
177
A
MET
178
n
132
MET
178
A
ALA
179
n
133
ALA
179
A
VAL
180
n
134
VAL
180
A
PHE
181
n
135
PHE
181
A
ILE
182
n
136
ILE
182
A
HIS
183
n
137
HIS
183
A
ASN
184
n
138
ASN
184
A
LYS
185
n
139
LYS
185
A
LYS
186
n
140
LYS
186
A
ARG
187
n
141
ARG
187
A
LYS
188
n
142
LYS
188
A
GLY
189
n
143
GLY
189
A
GLY
190
n
144
GLY
190
A
ILE
191
n
145
ILE
191
A
GLY
192
n
146
GLY
192
A
GLY
193
n
147
GLY
193
A
TYR
194
n
148
TYR
194
A
SER
195
n
149
SER
195
A
ALA
196
n
150
ALA
196
A
GLY
197
n
151
GLY
197
A
GLU
198
n
152
GLU
198
A
ARG
199
n
153
ARG
199
A
ILE
200
n
154
ILE
200
A
VAL
201
n
155
VAL
201
A
ASP
202
n
156
ASP
202
A
ILE
203
n
157
ILE
203
A
ILE
204
n
158
ILE
204
A
ALA
205
n
159
ALA
205
A
THR
206
n
160
THR
206
A
ASP
207
n
161
ASP
207
A
ILE
208
n
162
ILE
208
A
GLN
209
n
163
GLN
209
A
n
164
210
A
n
165
211
A
n
166
212
A
n
1
47
B
n
2
48
B
n
3
49
B
n
4
50
B
n
5
51
B
n
6
52
B
n
7
53
B
n
8
54
B
n
9
55
B
CYS
56
n
10
CYS
56
B
SER
57
n
11
SER
57
B
PRO
58
n
12
PRO
58
B
GLY
59
n
13
GLY
59
B
ILE
60
n
14
ILE
60
B
TRP
61
n
15
TRP
61
B
GLN
62
n
16
GLN
62
B
LEU
63
n
17
LEU
63
B
ASP
64
n
18
ASP
64
B
CYS
65
n
19
CYS
65
B
THR
66
n
20
THR
66
B
HIS
67
n
21
HIS
67
B
LEU
68
n
22
LEU
68
B
GLU
69
n
23
GLU
69
B
GLY
70
n
24
GLY
70
B
LYS
71
n
25
LYS
71
B
VAL
72
n
26
VAL
72
B
ILE
73
n
27
ILE
73
B
LEU
74
n
28
LEU
74
B
VAL
75
n
29
VAL
75
B
ALA
76
n
30
ALA
76
B
VAL
77
n
31
VAL
77
B
HIS
78
n
32
HIS
78
B
VAL
79
n
33
VAL
79
B
ALA
80
n
34
ALA
80
B
SER
81
n
35
SER
81
B
GLY
82
n
36
GLY
82
B
TYR
83
n
37
TYR
83
B
ILE
84
n
38
ILE
84
B
GLU
85
n
39
GLU
85
B
ALA
86
n
40
ALA
86
B
GLU
87
n
41
GLU
87
B
VAL
88
n
42
VAL
88
B
ILE
89
n
43
ILE
89
B
PRO
90
n
44
PRO
90
B
ALA
91
n
45
ALA
91
B
GLU
92
n
46
GLU
92
B
THR
93
n
47
THR
93
B
GLY
94
n
48
GLY
94
B
GLN
95
n
49
GLN
95
B
GLU
96
n
50
GLU
96
B
THR
97
n
51
THR
97
B
ALA
98
n
52
ALA
98
B
TYR
99
n
53
TYR
99
B
PHE
100
n
54
PHE
100
B
LEU
101
n
55
LEU
101
B
LEU
102
n
56
LEU
102
B
LYS
103
n
57
LYS
103
B
LEU
104
n
58
LEU
104
B
ALA
105
n
59
ALA
105
B
GLY
106
n
60
GLY
106
B
ARG
107
n
61
ARG
107
B
TRP
108
n
62
TRP
108
B
PRO
109
n
63
PRO
109
B
VAL
110
n
64
VAL
110
B
LYS
111
n
65
LYS
111
B
THR
112
n
66
THR
112
B
VAL
113
n
67
VAL
113
B
HIS
114
n
68
HIS
114
B
THR
115
n
69
THR
115
B
ASP
116
n
70
ASP
116
B
ASN
117
n
71
ASN
117
B
GLY
118
n
72
GLY
118
B
SER
119
n
73
SER
119
B
ASN
120
n
74
ASN
120
B
PHE
121
n
75
PHE
121
B
THR
122
n
76
THR
122
B
SER
123
n
77
SER
123
B
THR
124
n
78
THR
124
B
THR
125
n
79
THR
125
B
VAL
126
n
80
VAL
126
B
LYS
127
n
81
LYS
127
B
ALA
128
n
82
ALA
128
B
ALA
129
n
83
ALA
129
B
CYS
130
n
84
CYS
130
B
GLU
131
n
85
GLU
131
B
TRP
132
n
86
TRP
132
B
ALA
133
n
87
ALA
133
B
GLY
134
n
88
GLY
134
B
ILE
135
n
89
ILE
135
B
LYS
136
n
90
LYS
136
B
GLN
137
n
91
GLN
137
B
GLU
138
n
92
GLU
138
B
PHE
139
n
93
PHE
139
B
GLY
140
n
94
GLY
140
B
ILE
141
n
95
ILE
141
B
PRO
142
n
96
PRO
142
B
TYR
143
n
97
TYR
143
B
ASN
144
n
98
ASN
144
B
PRO
145
n
99
PRO
145
B
GLN
146
n
100
GLN
146
B
SER
147
n
101
SER
147
B
GLN
148
n
102
GLN
148
B
GLY
149
n
103
GLY
149
B
VAL
150
n
104
VAL
150
B
ILE
151
n
105
ILE
151
B
GLU
152
n
106
GLU
152
B
SER
153
n
107
SER
153
B
MET
154
n
108
MET
154
B
ASN
155
n
109
ASN
155
B
LYS
156
n
110
LYS
156
B
GLU
157
n
111
GLU
157
B
LEU
158
n
112
LEU
158
B
LYS
159
n
113
LYS
159
B
LYS
160
n
114
LYS
160
B
ILE
161
n
115
ILE
161
B
ILE
162
n
116
ILE
162
B
GLY
163
n
117
GLY
163
B
GLN
164
n
118
GLN
164
B
VAL
165
n
119
VAL
165
B
ARG
166
n
120
ARG
166
B
ASP
167
n
121
ASP
167
B
GLN
168
n
122
GLN
168
B
ALA
169
n
123
ALA
169
B
GLU
170
n
124
GLU
170
B
HIS
171
n
125
HIS
171
B
LEU
172
n
126
LEU
172
B
LYS
173
n
127
LYS
173
B
THR
174
n
128
THR
174
B
ALA
175
n
129
ALA
175
B
VAL
176
n
130
VAL
176
B
GLN
177
n
131
GLN
177
B
MET
178
n
132
MET
178
B
ALA
179
n
133
ALA
179
B
VAL
180
n
134
VAL
180
B
PHE
181
n
135
PHE
181
B
ILE
182
n
136
ILE
182
B
HIS
183
n
137
HIS
183
B
ASN
184
n
138
ASN
184
B
LYS
185
n
139
LYS
185
B
LYS
186
n
140
LYS
186
B
ARG
187
n
141
ARG
187
B
LYS
188
n
142
LYS
188
B
GLY
189
n
143
GLY
189
B
GLY
190
n
144
GLY
190
B
ILE
191
n
145
ILE
191
B
GLY
192
n
146
GLY
192
B
GLY
193
n
147
GLY
193
B
TYR
194
n
148
TYR
194
B
SER
195
n
149
SER
195
B
ALA
196
n
150
ALA
196
B
GLY
197
n
151
GLY
197
B
GLU
198
n
152
GLU
198
B
ARG
199
n
153
ARG
199
B
ILE
200
n
154
ILE
200
B
VAL
201
n
155
VAL
201
B
ASP
202
n
156
ASP
202
B
ILE
203
n
157
ILE
203
B
ILE
204
n
158
ILE
204
B
ALA
205
n
159
ALA
205
B
THR
206
n
160
THR
206
B
ASP
207
n
161
ASP
207
B
ILE
208
n
162
ILE
208
B
GLN
209
n
163
GLN
209
B
n
164
210
B
n
165
211
B
n
166
212
B
author_and_software_defined_assembly
PISA
2
dimeric
2960
-17
13640
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
83
A
O
TYR
37
A
N
HIS
78
A
N
HIS
32
A
O
LYS
71
A
O
LYS
25
A
N
LEU
68
A
N
LEU
22
A
O
TRP
61
A
O
TRP
15
A
N
THR
112
A
N
THR
66
A
O
VAL
113
A
O
VAL
67
A
N
LYS
136
A
N
LYS
90
B
O
GLU
85
B
O
GLU
39
B
N
ALA
76
B
N
ALA
30
B
O
LYS
71
B
O
LYS
25
B
N
LEU
68
B
N
LEU
22
B
O
TRP
61
B
O
TRP
15
B
N
THR
112
B
N
THR
66
B
O
VAL
113
B
O
VAL
67
B
N
LYS
136
B
N
LYS
90
1
A
GLY
47
A
GLY
1
1
Y
1
A
SER
48
A
SER
2
1
Y
1
A
HIS
49
A
HIS
3
1
Y
1
A
MET
50
A
MET
4
1
Y
1
A
HIS
51
A
HIS
5
1
Y
1
A
GLY
52
A
GLY
6
1
Y
1
A
GLN
53
A
GLN
7
1
Y
1
A
VAL
54
A
VAL
8
1
Y
1
A
ASP
55
A
ASP
9
1
Y
1
A
TYR
143
A
TYR
97
1
Y
1
A
ASN
144
A
ASN
98
1
Y
1
A
PRO
145
A
PRO
99
1
Y
1
A
GLN
146
A
GLN
100
1
Y
1
A
SER
147
A
SER
101
1
Y
1
A
GLN
148
A
GLN
102
1
Y
1
A
GLY
149
A
GLY
103
1
Y
1
A
VAL
150
A
VAL
104
1
Y
1
A
ASP
210
A
ASP
164
1
Y
1
A
ILE
211
A
ILE
165
1
Y
1
A
GLN
212
A
GLN
166
1
Y
1
B
GLY
47
B
GLY
1
1
Y
1
B
SER
48
B
SER
2
1
Y
1
B
HIS
49
B
HIS
3
1
Y
1
B
MET
50
B
MET
4
1
Y
1
B
HIS
51
B
HIS
5
1
Y
1
B
GLY
52
B
GLY
6
1
Y
1
B
GLN
53
B
GLN
7
1
Y
1
B
VAL
54
B
VAL
8
1
Y
1
B
ASP
55
B
ASP
9
1
Y
1
B
ASP
210
B
ASP
164
1
Y
1
B
ILE
211
B
ILE
165
1
Y
1
B
GLN
212
B
GLN
166
1
Y
1
A
A
HZ3
H1
LYS
HOH
127
821
1.24
1
B
A
HZ2
H1
LYS
HOH
127
815
1.15
1_555
1_554
1
B
ASN
117
-99.39
30.44
1
B
PRO
142
-32.44
141.96
1
B
TYR
143
-35.14
58.87
1
B
PRO
145
-135.05
-121.68
1
B
GLN
146
-171.20
35.41
PARHCSDX.PRO
TOPH19.SOL
PARAM19.SOL
TOPHCSDX.PRO
0.2560000
0.008
0.2040000
0.2040000
1.95
1012
20884
5
93.8
RANDOM
10000000.0
0.001
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1ITG
1.95
152
2609
0
0
2457
0.009
1.700
1.301
0.3610000
0.068
0.3307000
1.98
28
788
20
3.5
83
1.95
1BIS
20883
-3
0.0280000
1
25.0
2.0
93.8
0.1060000
1.95
2.02
8.6
2
83.8
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
3.1
HIV-1 INTEGRASE CORE DOMAIN
1
N
N
1
N
N
2
N
N
2
N
N
A
GLY
94
A
GLY
48
HELX_P
A
ARG
107
A
ARG
61
1
1
14
A
SER
119
A
SER
73
HELX_P
A
THR
122
A
THR
76
1
2
4
A
THR
124
A
THR
78
HELX_P
A
ALA
133
A
ALA
87
1
3
10
A
GLU
152
A
GLU
106
HELX_P
A
GLN
168
A
GLN
122
1
4
17
A
LEU
172
A
LEU
126
HELX_P
A
LYS
185
A
LYS
139
1
5
14
A
LYS
188
A
LYS
142
HELX_P
A
GLY
190
A
GLY
144
5
6
3
A
ALA
196
A
ALA
150
HELX_P
A
ASP
207
A
ASP
161
1
7
12
B
GLY
94
B
GLY
48
HELX_P
B
ARG
107
B
ARG
61
1
8
14
B
THR
124
B
THR
78
HELX_P
B
ALA
133
B
ALA
87
1
9
10
B
SER
147
B
SER
101
HELX_P
B
GLN
168
B
GLN
122
1
10
22
B
LEU
172
B
LEU
126
HELX_P
B
LYS
185
B
LYS
139
1
11
14
B
LYS
188
B
LYS
142
HELX_P
B
GLY
190
B
GLY
144
5
12
3
B
ALA
196
B
ALA
150
HELX_P
B
ASP
207
B
ASP
161
1
13
12
DNA INTEGRATION
DNA INTEGRATION, INTEGRASE, HIV, HYDROLASE, ASPARTYL PROTEASE, ENDONUCLEASE
given
-0.456182
-0.889688
0.018811
-0.889882
0.456148
-0.006267
-0.003005
-0.019598
-0.999803
0.06050
0.02390
-0.22010
POL_HV1N5
UNP
1
1
P12497
FFREDLAFPQGKAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALL
DTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVGQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPI
ETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQ
DFWEVQLGIPHPAGLKQKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMT
KILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIV
LPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGVYYDPSKDL
IAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMKGAHTNDVKQLTEAVQKIATESIVIWGKTPKFKLPIQKETWEAWWTEY
WQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLA
LQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDGLVSAGIRKVLFLDGI
DKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIE
AEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQV
RDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKG
EGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
762
924
1BIS
47
209
P12497
A
1
1
163
762
924
1BIS
47
209
P12497
B
1
1
163
1
GLU
conflict
SER
48
1BIS
A
P12497
UNP
763
2
1
ALA
conflict
HIS
49
1BIS
A
P12497
UNP
764
3
1
TRP
engineered mutation
GLU
131
1BIS
A
P12497
UNP
846
85
1
PHE
engineered mutation
LYS
185
1BIS
A
P12497
UNP
900
139
2
GLU
conflict
SER
48
1BIS
B
P12497
UNP
763
2
2
ALA
conflict
HIS
49
1BIS
B
P12497
UNP
764
3
2
TRP
engineered mutation
GLU
131
1BIS
B
P12497
UNP
846
85
2
PHE
engineered mutation
LYS
185
1BIS
B
P12497
UNP
900
139
5
5
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
A
TYR
83
A
TYR
37
A
ILE
89
A
ILE
43
A
LYS
71
A
LYS
25
A
HIS
78
A
HIS
32
A
ILE
60
A
ILE
14
A
LEU
68
A
LEU
22
A
THR
112
A
THR
66
A
THR
115
A
THR
69
A
LYS
136
A
LYS
90
A
GLU
138
A
GLU
92
B
ILE
84
B
ILE
38
B
ILE
89
B
ILE
43
B
LYS
71
B
LYS
25
B
HIS
78
B
HIS
32
B
ILE
60
B
ILE
14
B
LEU
68
B
LEU
22
B
THR
112
B
THR
66
B
HIS
114
B
HIS
68
B
LYS
136
B
LYS
90
B
GLU
138
B
GLU
92
1
P 1