0.022178 -0.011481 -0.008281 0.000000 0.024979 -0.005248 0.000000 0.000000 0.022858 0.00000 0.00000 0.00000 Goldgur, Y. Dyda, F. Hickman, A.B. Jenkins, T.M. Craigie, R. Davies, D.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 68.82 64.74 62.63 45.090 45.080 49.430 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 95 9150 9154 10.1073/pnas.95.16.9150 9689049 Three new structures of the core domain of HIV-1 integrase: an active site that binds magnesium. 1998 US Science SCIEAS 0038 0036-8075 266 1981 Crystal Structure of the Catalytic Domain of HIV-1 Integrase: Similarity to Other Polynucleotidyl Transferases 1994 10.2210/pdb1bis/pdb pdb_00001bis 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 95 1 MIRRORS IMAGE PLATE 1997-11 RIGAKU NI FILTER M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH2R 18134.643 HIV-1 INTEGRASE CORE DOMAIN W131E, F185K 2 man polymer 18.015 water 152 nat water no no GSHMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTV KAACEWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIAT DIQDIQ GSHMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTV KAACEWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIAT DIQDIQ A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia Escherichia coli sample 11676 Human immunodeficiency virus 1 469008 Escherichia coli BL21(DE3) BL21 DE3 PET15B 1 2.18 43 7.0 PROTEIN WAS CRYSTALLIZED FROM 30% PEG 4000, 100 MM HEPES, PH 7.0, 5 MM DTT database_2 pdbx_database_status struct_ref_seq_dif pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Database references Other Refinement description 1 0 1998-08-19 1 1 2008-03-24 1 2 2011-07-13 1 3 2021-11-03 1 4 2023-08-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_ref_seq_dif.details Y BNL 1998-06-19 REL REL HOH water 1ITG PDB ENTRY 1ITG PDB experimental model HOH 234 2 HOH HOH 234 A HOH 263 2 HOH HOH 263 A HOH 271 2 HOH HOH 271 A HOH 291 2 HOH HOH 291 A HOH 315 2 HOH HOH 315 A HOH 317 2 HOH HOH 317 A HOH 323 2 HOH HOH 323 A HOH 337 2 HOH HOH 337 A HOH 340 2 HOH HOH 340 A HOH 348 2 HOH HOH 348 A HOH 353 2 HOH HOH 353 A HOH 355 2 HOH HOH 355 A HOH 358 2 HOH HOH 358 A HOH 361 2 HOH HOH 361 A HOH 364 2 HOH HOH 364 A HOH 366 2 HOH HOH 366 A HOH 381 2 HOH HOH 381 A HOH 389 2 HOH HOH 389 A HOH 400 2 HOH HOH 400 A HOH 412 2 HOH HOH 412 A HOH 421 2 HOH HOH 421 A HOH 422 2 HOH HOH 422 A HOH 446 2 HOH HOH 446 A HOH 449 2 HOH HOH 449 A HOH 462 2 HOH HOH 462 A HOH 469 2 HOH HOH 469 A HOH 483 2 HOH HOH 483 A HOH 490 2 HOH HOH 490 A HOH 508 2 HOH HOH 508 A HOH 525 2 HOH HOH 525 A HOH 526 2 HOH HOH 526 A HOH 531 2 HOH HOH 531 A HOH 537 2 HOH HOH 537 A HOH 554 2 HOH HOH 554 A HOH 556 2 HOH HOH 556 A HOH 562 2 HOH HOH 562 A HOH 575 2 HOH HOH 575 A HOH 578 2 HOH HOH 578 A HOH 591 2 HOH HOH 591 A HOH 594 2 HOH HOH 594 A HOH 609 2 HOH HOH 609 A HOH 611 2 HOH HOH 611 A HOH 629 2 HOH HOH 629 A HOH 637 2 HOH HOH 637 A HOH 649 2 HOH HOH 649 A HOH 671 2 HOH HOH 671 A HOH 688 2 HOH HOH 688 A HOH 709 2 HOH HOH 709 A HOH 724 2 HOH HOH 724 A HOH 727 2 HOH HOH 727 A HOH 729 2 HOH HOH 729 A HOH 741 2 HOH HOH 741 A HOH 759 2 HOH HOH 759 A HOH 771 2 HOH HOH 771 A HOH 792 2 HOH HOH 792 A HOH 804 2 HOH HOH 804 A HOH 812 2 HOH HOH 812 A HOH 815 2 HOH HOH 815 A HOH 817 2 HOH HOH 817 A HOH 821 2 HOH HOH 821 A HOH 841 2 HOH HOH 841 A HOH 856 2 HOH HOH 856 A HOH 865 2 HOH HOH 865 A HOH 880 2 HOH HOH 880 A HOH 883 2 HOH HOH 883 A HOH 904 2 HOH HOH 904 A HOH 906 2 HOH HOH 906 A HOH 922 2 HOH HOH 922 A HOH 930 2 HOH HOH 930 A HOH 933 2 HOH HOH 933 A HOH 937 2 HOH HOH 937 A HOH 951 2 HOH HOH 951 A HOH 962 2 HOH HOH 962 A HOH 963 2 HOH HOH 963 A HOH 968 2 HOH HOH 968 A HOH 975 2 HOH HOH 975 A HOH 977 2 HOH HOH 977 A HOH 987 2 HOH HOH 987 A HOH 996 2 HOH HOH 996 A HOH 1030 2 HOH HOH 1030 A HOH 367 2 HOH HOH 367 B HOH 377 2 HOH HOH 377 B HOH 394 2 HOH HOH 394 B HOH 396 2 HOH HOH 396 B HOH 430 2 HOH HOH 430 B HOH 432 2 HOH HOH 432 B HOH 437 2 HOH HOH 437 B HOH 443 2 HOH HOH 443 B HOH 447 2 HOH HOH 447 B HOH 454 2 HOH HOH 454 B HOH 456 2 HOH HOH 456 B HOH 458 2 HOH HOH 458 B HOH 467 2 HOH HOH 467 B HOH 470 2 HOH HOH 470 B HOH 509 2 HOH HOH 509 B HOH 511 2 HOH HOH 511 B HOH 513 2 HOH HOH 513 B HOH 538 2 HOH HOH 538 B HOH 539 2 HOH HOH 539 B HOH 543 2 HOH HOH 543 B HOH 549 2 HOH HOH 549 B HOH 581 2 HOH HOH 581 B HOH 595 2 HOH HOH 595 B HOH 660 2 HOH HOH 660 B HOH 669 2 HOH HOH 669 B HOH 670 2 HOH HOH 670 B HOH 672 2 HOH HOH 672 B HOH 689 2 HOH HOH 689 B HOH 695 2 HOH HOH 695 B HOH 699 2 HOH HOH 699 B HOH 701 2 HOH HOH 701 B HOH 707 2 HOH HOH 707 B HOH 710 2 HOH HOH 710 B HOH 738 2 HOH HOH 738 B HOH 756 2 HOH HOH 756 B HOH 764 2 HOH HOH 764 B HOH 773 2 HOH HOH 773 B HOH 776 2 HOH HOH 776 B HOH 788 2 HOH HOH 788 B HOH 790 2 HOH HOH 790 B HOH 805 2 HOH HOH 805 B HOH 816 2 HOH HOH 816 B HOH 844 2 HOH HOH 844 B HOH 863 2 HOH HOH 863 B HOH 878 2 HOH HOH 878 B HOH 884 2 HOH HOH 884 B HOH 893 2 HOH HOH 893 B HOH 925 2 HOH HOH 925 B HOH 927 2 HOH HOH 927 B HOH 931 2 HOH HOH 931 B HOH 934 2 HOH HOH 934 B HOH 938 2 HOH HOH 938 B HOH 948 2 HOH HOH 948 B HOH 952 2 HOH HOH 952 B HOH 960 2 HOH HOH 960 B HOH 973 2 HOH HOH 973 B HOH 984 2 HOH HOH 984 B HOH 1005 2 HOH HOH 1005 B HOH 1012 2 HOH HOH 1012 B HOH 1019 2 HOH HOH 1019 B HOH 1023 2 HOH HOH 1023 B HOH 1027 2 HOH HOH 1027 B HOH 1031 2 HOH HOH 1031 B HOH 1035 2 HOH HOH 1035 B HOH 1037 2 HOH HOH 1037 B HOH 1038 2 HOH HOH 1038 B HOH 1044 2 HOH HOH 1044 B HOH 1051 2 HOH HOH 1051 B HOH 1059 2 HOH HOH 1059 B HOH 1064 2 HOH HOH 1064 B HOH 1070 2 HOH HOH 1070 B HOH 1078 2 HOH HOH 1078 B n 1 47 A n 2 48 A n 3 49 A n 4 50 A n 5 51 A n 6 52 A n 7 53 A n 8 54 A n 9 55 A CYS 56 n 10 CYS 56 A SER 57 n 11 SER 57 A PRO 58 n 12 PRO 58 A GLY 59 n 13 GLY 59 A ILE 60 n 14 ILE 60 A TRP 61 n 15 TRP 61 A GLN 62 n 16 GLN 62 A LEU 63 n 17 LEU 63 A ASP 64 n 18 ASP 64 A CYS 65 n 19 CYS 65 A THR 66 n 20 THR 66 A HIS 67 n 21 HIS 67 A LEU 68 n 22 LEU 68 A GLU 69 n 23 GLU 69 A GLY 70 n 24 GLY 70 A LYS 71 n 25 LYS 71 A VAL 72 n 26 VAL 72 A ILE 73 n 27 ILE 73 A LEU 74 n 28 LEU 74 A VAL 75 n 29 VAL 75 A ALA 76 n 30 ALA 76 A VAL 77 n 31 VAL 77 A HIS 78 n 32 HIS 78 A VAL 79 n 33 VAL 79 A ALA 80 n 34 ALA 80 A SER 81 n 35 SER 81 A GLY 82 n 36 GLY 82 A TYR 83 n 37 TYR 83 A ILE 84 n 38 ILE 84 A GLU 85 n 39 GLU 85 A ALA 86 n 40 ALA 86 A GLU 87 n 41 GLU 87 A VAL 88 n 42 VAL 88 A ILE 89 n 43 ILE 89 A PRO 90 n 44 PRO 90 A ALA 91 n 45 ALA 91 A GLU 92 n 46 GLU 92 A THR 93 n 47 THR 93 A GLY 94 n 48 GLY 94 A GLN 95 n 49 GLN 95 A GLU 96 n 50 GLU 96 A THR 97 n 51 THR 97 A ALA 98 n 52 ALA 98 A TYR 99 n 53 TYR 99 A PHE 100 n 54 PHE 100 A LEU 101 n 55 LEU 101 A LEU 102 n 56 LEU 102 A LYS 103 n 57 LYS 103 A LEU 104 n 58 LEU 104 A ALA 105 n 59 ALA 105 A GLY 106 n 60 GLY 106 A ARG 107 n 61 ARG 107 A TRP 108 n 62 TRP 108 A PRO 109 n 63 PRO 109 A VAL 110 n 64 VAL 110 A LYS 111 n 65 LYS 111 A THR 112 n 66 THR 112 A VAL 113 n 67 VAL 113 A HIS 114 n 68 HIS 114 A THR 115 n 69 THR 115 A ASP 116 n 70 ASP 116 A ASN 117 n 71 ASN 117 A GLY 118 n 72 GLY 118 A SER 119 n 73 SER 119 A ASN 120 n 74 ASN 120 A PHE 121 n 75 PHE 121 A THR 122 n 76 THR 122 A SER 123 n 77 SER 123 A THR 124 n 78 THR 124 A THR 125 n 79 THR 125 A VAL 126 n 80 VAL 126 A LYS 127 n 81 LYS 127 A ALA 128 n 82 ALA 128 A ALA 129 n 83 ALA 129 A CYS 130 n 84 CYS 130 A GLU 131 n 85 GLU 131 A TRP 132 n 86 TRP 132 A ALA 133 n 87 ALA 133 A GLY 134 n 88 GLY 134 A ILE 135 n 89 ILE 135 A LYS 136 n 90 LYS 136 A GLN 137 n 91 GLN 137 A GLU 138 n 92 GLU 138 A PHE 139 n 93 PHE 139 A GLY 140 n 94 GLY 140 A ILE 141 n 95 ILE 141 A PRO 142 n 96 PRO 142 A n 97 143 A n 98 144 A n 99 145 A n 100 146 A n 101 147 A n 102 148 A n 103 149 A n 104 150 A ILE 151 n 105 ILE 151 A GLU 152 n 106 GLU 152 A SER 153 n 107 SER 153 A MET 154 n 108 MET 154 A ASN 155 n 109 ASN 155 A LYS 156 n 110 LYS 156 A GLU 157 n 111 GLU 157 A LEU 158 n 112 LEU 158 A LYS 159 n 113 LYS 159 A LYS 160 n 114 LYS 160 A ILE 161 n 115 ILE 161 A ILE 162 n 116 ILE 162 A GLY 163 n 117 GLY 163 A GLN 164 n 118 GLN 164 A VAL 165 n 119 VAL 165 A ARG 166 n 120 ARG 166 A ASP 167 n 121 ASP 167 A GLN 168 n 122 GLN 168 A ALA 169 n 123 ALA 169 A GLU 170 n 124 GLU 170 A HIS 171 n 125 HIS 171 A LEU 172 n 126 LEU 172 A LYS 173 n 127 LYS 173 A THR 174 n 128 THR 174 A ALA 175 n 129 ALA 175 A VAL 176 n 130 VAL 176 A GLN 177 n 131 GLN 177 A MET 178 n 132 MET 178 A ALA 179 n 133 ALA 179 A VAL 180 n 134 VAL 180 A PHE 181 n 135 PHE 181 A ILE 182 n 136 ILE 182 A HIS 183 n 137 HIS 183 A ASN 184 n 138 ASN 184 A LYS 185 n 139 LYS 185 A LYS 186 n 140 LYS 186 A ARG 187 n 141 ARG 187 A LYS 188 n 142 LYS 188 A GLY 189 n 143 GLY 189 A GLY 190 n 144 GLY 190 A ILE 191 n 145 ILE 191 A GLY 192 n 146 GLY 192 A GLY 193 n 147 GLY 193 A TYR 194 n 148 TYR 194 A SER 195 n 149 SER 195 A ALA 196 n 150 ALA 196 A GLY 197 n 151 GLY 197 A GLU 198 n 152 GLU 198 A ARG 199 n 153 ARG 199 A ILE 200 n 154 ILE 200 A VAL 201 n 155 VAL 201 A ASP 202 n 156 ASP 202 A ILE 203 n 157 ILE 203 A ILE 204 n 158 ILE 204 A ALA 205 n 159 ALA 205 A THR 206 n 160 THR 206 A ASP 207 n 161 ASP 207 A ILE 208 n 162 ILE 208 A GLN 209 n 163 GLN 209 A n 164 210 A n 165 211 A n 166 212 A n 1 47 B n 2 48 B n 3 49 B n 4 50 B n 5 51 B n 6 52 B n 7 53 B n 8 54 B n 9 55 B CYS 56 n 10 CYS 56 B SER 57 n 11 SER 57 B PRO 58 n 12 PRO 58 B GLY 59 n 13 GLY 59 B ILE 60 n 14 ILE 60 B TRP 61 n 15 TRP 61 B GLN 62 n 16 GLN 62 B LEU 63 n 17 LEU 63 B ASP 64 n 18 ASP 64 B CYS 65 n 19 CYS 65 B THR 66 n 20 THR 66 B HIS 67 n 21 HIS 67 B LEU 68 n 22 LEU 68 B GLU 69 n 23 GLU 69 B GLY 70 n 24 GLY 70 B LYS 71 n 25 LYS 71 B VAL 72 n 26 VAL 72 B ILE 73 n 27 ILE 73 B LEU 74 n 28 LEU 74 B VAL 75 n 29 VAL 75 B ALA 76 n 30 ALA 76 B VAL 77 n 31 VAL 77 B HIS 78 n 32 HIS 78 B VAL 79 n 33 VAL 79 B ALA 80 n 34 ALA 80 B SER 81 n 35 SER 81 B GLY 82 n 36 GLY 82 B TYR 83 n 37 TYR 83 B ILE 84 n 38 ILE 84 B GLU 85 n 39 GLU 85 B ALA 86 n 40 ALA 86 B GLU 87 n 41 GLU 87 B VAL 88 n 42 VAL 88 B ILE 89 n 43 ILE 89 B PRO 90 n 44 PRO 90 B ALA 91 n 45 ALA 91 B GLU 92 n 46 GLU 92 B THR 93 n 47 THR 93 B GLY 94 n 48 GLY 94 B GLN 95 n 49 GLN 95 B GLU 96 n 50 GLU 96 B THR 97 n 51 THR 97 B ALA 98 n 52 ALA 98 B TYR 99 n 53 TYR 99 B PHE 100 n 54 PHE 100 B LEU 101 n 55 LEU 101 B LEU 102 n 56 LEU 102 B LYS 103 n 57 LYS 103 B LEU 104 n 58 LEU 104 B ALA 105 n 59 ALA 105 B GLY 106 n 60 GLY 106 B ARG 107 n 61 ARG 107 B TRP 108 n 62 TRP 108 B PRO 109 n 63 PRO 109 B VAL 110 n 64 VAL 110 B LYS 111 n 65 LYS 111 B THR 112 n 66 THR 112 B VAL 113 n 67 VAL 113 B HIS 114 n 68 HIS 114 B THR 115 n 69 THR 115 B ASP 116 n 70 ASP 116 B ASN 117 n 71 ASN 117 B GLY 118 n 72 GLY 118 B SER 119 n 73 SER 119 B ASN 120 n 74 ASN 120 B PHE 121 n 75 PHE 121 B THR 122 n 76 THR 122 B SER 123 n 77 SER 123 B THR 124 n 78 THR 124 B THR 125 n 79 THR 125 B VAL 126 n 80 VAL 126 B LYS 127 n 81 LYS 127 B ALA 128 n 82 ALA 128 B ALA 129 n 83 ALA 129 B CYS 130 n 84 CYS 130 B GLU 131 n 85 GLU 131 B TRP 132 n 86 TRP 132 B ALA 133 n 87 ALA 133 B GLY 134 n 88 GLY 134 B ILE 135 n 89 ILE 135 B LYS 136 n 90 LYS 136 B GLN 137 n 91 GLN 137 B GLU 138 n 92 GLU 138 B PHE 139 n 93 PHE 139 B GLY 140 n 94 GLY 140 B ILE 141 n 95 ILE 141 B PRO 142 n 96 PRO 142 B TYR 143 n 97 TYR 143 B ASN 144 n 98 ASN 144 B PRO 145 n 99 PRO 145 B GLN 146 n 100 GLN 146 B SER 147 n 101 SER 147 B GLN 148 n 102 GLN 148 B GLY 149 n 103 GLY 149 B VAL 150 n 104 VAL 150 B ILE 151 n 105 ILE 151 B GLU 152 n 106 GLU 152 B SER 153 n 107 SER 153 B MET 154 n 108 MET 154 B ASN 155 n 109 ASN 155 B LYS 156 n 110 LYS 156 B GLU 157 n 111 GLU 157 B LEU 158 n 112 LEU 158 B LYS 159 n 113 LYS 159 B LYS 160 n 114 LYS 160 B ILE 161 n 115 ILE 161 B ILE 162 n 116 ILE 162 B GLY 163 n 117 GLY 163 B GLN 164 n 118 GLN 164 B VAL 165 n 119 VAL 165 B ARG 166 n 120 ARG 166 B ASP 167 n 121 ASP 167 B GLN 168 n 122 GLN 168 B ALA 169 n 123 ALA 169 B GLU 170 n 124 GLU 170 B HIS 171 n 125 HIS 171 B LEU 172 n 126 LEU 172 B LYS 173 n 127 LYS 173 B THR 174 n 128 THR 174 B ALA 175 n 129 ALA 175 B VAL 176 n 130 VAL 176 B GLN 177 n 131 GLN 177 B MET 178 n 132 MET 178 B ALA 179 n 133 ALA 179 B VAL 180 n 134 VAL 180 B PHE 181 n 135 PHE 181 B ILE 182 n 136 ILE 182 B HIS 183 n 137 HIS 183 B ASN 184 n 138 ASN 184 B LYS 185 n 139 LYS 185 B LYS 186 n 140 LYS 186 B ARG 187 n 141 ARG 187 B LYS 188 n 142 LYS 188 B GLY 189 n 143 GLY 189 B GLY 190 n 144 GLY 190 B ILE 191 n 145 ILE 191 B GLY 192 n 146 GLY 192 B GLY 193 n 147 GLY 193 B TYR 194 n 148 TYR 194 B SER 195 n 149 SER 195 B ALA 196 n 150 ALA 196 B GLY 197 n 151 GLY 197 B GLU 198 n 152 GLU 198 B ARG 199 n 153 ARG 199 B ILE 200 n 154 ILE 200 B VAL 201 n 155 VAL 201 B ASP 202 n 156 ASP 202 B ILE 203 n 157 ILE 203 B ILE 204 n 158 ILE 204 B ALA 205 n 159 ALA 205 B THR 206 n 160 THR 206 B ASP 207 n 161 ASP 207 B ILE 208 n 162 ILE 208 B GLN 209 n 163 GLN 209 B n 164 210 B n 165 211 B n 166 212 B author_and_software_defined_assembly PISA 2 dimeric 2960 -17 13640 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 83 A O TYR 37 A N HIS 78 A N HIS 32 A O LYS 71 A O LYS 25 A N LEU 68 A N LEU 22 A O TRP 61 A O TRP 15 A N THR 112 A N THR 66 A O VAL 113 A O VAL 67 A N LYS 136 A N LYS 90 B O GLU 85 B O GLU 39 B N ALA 76 B N ALA 30 B O LYS 71 B O LYS 25 B N LEU 68 B N LEU 22 B O TRP 61 B O TRP 15 B N THR 112 B N THR 66 B O VAL 113 B O VAL 67 B N LYS 136 B N LYS 90 1 A GLY 47 A GLY 1 1 Y 1 A SER 48 A SER 2 1 Y 1 A HIS 49 A HIS 3 1 Y 1 A MET 50 A MET 4 1 Y 1 A HIS 51 A HIS 5 1 Y 1 A GLY 52 A GLY 6 1 Y 1 A GLN 53 A GLN 7 1 Y 1 A VAL 54 A VAL 8 1 Y 1 A ASP 55 A ASP 9 1 Y 1 A TYR 143 A TYR 97 1 Y 1 A ASN 144 A ASN 98 1 Y 1 A PRO 145 A PRO 99 1 Y 1 A GLN 146 A GLN 100 1 Y 1 A SER 147 A SER 101 1 Y 1 A GLN 148 A GLN 102 1 Y 1 A GLY 149 A GLY 103 1 Y 1 A VAL 150 A VAL 104 1 Y 1 A ASP 210 A ASP 164 1 Y 1 A ILE 211 A ILE 165 1 Y 1 A GLN 212 A GLN 166 1 Y 1 B GLY 47 B GLY 1 1 Y 1 B SER 48 B SER 2 1 Y 1 B HIS 49 B HIS 3 1 Y 1 B MET 50 B MET 4 1 Y 1 B HIS 51 B HIS 5 1 Y 1 B GLY 52 B GLY 6 1 Y 1 B GLN 53 B GLN 7 1 Y 1 B VAL 54 B VAL 8 1 Y 1 B ASP 55 B ASP 9 1 Y 1 B ASP 210 B ASP 164 1 Y 1 B ILE 211 B ILE 165 1 Y 1 B GLN 212 B GLN 166 1 Y 1 A A HZ3 H1 LYS HOH 127 821 1.24 1 B A HZ2 H1 LYS HOH 127 815 1.15 1_555 1_554 1 B ASN 117 -99.39 30.44 1 B PRO 142 -32.44 141.96 1 B TYR 143 -35.14 58.87 1 B PRO 145 -135.05 -121.68 1 B GLN 146 -171.20 35.41 PARHCSDX.PRO TOPH19.SOL PARAM19.SOL TOPHCSDX.PRO 0.2560000 0.008 0.2040000 0.2040000 1.95 1012 20884 5 93.8 RANDOM 10000000.0 0.001 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1ITG 1.95 152 2609 0 0 2457 0.009 1.700 1.301 0.3610000 0.068 0.3307000 1.98 28 788 20 3.5 83 1.95 1BIS 20883 -3 0.0280000 1 25.0 2.0 93.8 0.1060000 1.95 2.02 8.6 2 83.8 model building X-PLOR 3.1 refinement X-PLOR 3.1 data reduction DENZO data scaling SCALEPACK phasing X-PLOR 3.1 HIV-1 INTEGRASE CORE DOMAIN 1 N N 1 N N 2 N N 2 N N A GLY 94 A GLY 48 HELX_P A ARG 107 A ARG 61 1 1 14 A SER 119 A SER 73 HELX_P A THR 122 A THR 76 1 2 4 A THR 124 A THR 78 HELX_P A ALA 133 A ALA 87 1 3 10 A GLU 152 A GLU 106 HELX_P A GLN 168 A GLN 122 1 4 17 A LEU 172 A LEU 126 HELX_P A LYS 185 A LYS 139 1 5 14 A LYS 188 A LYS 142 HELX_P A GLY 190 A GLY 144 5 6 3 A ALA 196 A ALA 150 HELX_P A ASP 207 A ASP 161 1 7 12 B GLY 94 B GLY 48 HELX_P B ARG 107 B ARG 61 1 8 14 B THR 124 B THR 78 HELX_P B ALA 133 B ALA 87 1 9 10 B SER 147 B SER 101 HELX_P B GLN 168 B GLN 122 1 10 22 B LEU 172 B LEU 126 HELX_P B LYS 185 B LYS 139 1 11 14 B LYS 188 B LYS 142 HELX_P B GLY 190 B GLY 144 5 12 3 B ALA 196 B ALA 150 HELX_P B ASP 207 B ASP 161 1 13 12 DNA INTEGRATION DNA INTEGRATION, INTEGRASE, HIV, HYDROLASE, ASPARTYL PROTEASE, ENDONUCLEASE given -0.456182 -0.889688 0.018811 -0.889882 0.456148 -0.006267 -0.003005 -0.019598 -0.999803 0.06050 0.02390 -0.22010 POL_HV1N5 UNP 1 1 P12497 FFREDLAFPQGKAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALL DTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVGQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPI ETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQ DFWEVQLGIPHPAGLKQKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMT KILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIV LPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGVYYDPSKDL IAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMKGAHTNDVKQLTEAVQKIATESIVIWGKTPKFKLPIQKETWEAWWTEY WQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLA LQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDGLVSAGIRKVLFLDGI DKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIE AEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQV RDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKG EGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED 762 924 1BIS 47 209 P12497 A 1 1 163 762 924 1BIS 47 209 P12497 B 1 1 163 1 GLU conflict SER 48 1BIS A P12497 UNP 763 2 1 ALA conflict HIS 49 1BIS A P12497 UNP 764 3 1 TRP engineered mutation GLU 131 1BIS A P12497 UNP 846 85 1 PHE engineered mutation LYS 185 1BIS A P12497 UNP 900 139 2 GLU conflict SER 48 1BIS B P12497 UNP 763 2 2 ALA conflict HIS 49 1BIS B P12497 UNP 764 3 2 TRP engineered mutation GLU 131 1BIS B P12497 UNP 846 85 2 PHE engineered mutation LYS 185 1BIS B P12497 UNP 900 139 5 5 anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel parallel parallel A TYR 83 A TYR 37 A ILE 89 A ILE 43 A LYS 71 A LYS 25 A HIS 78 A HIS 32 A ILE 60 A ILE 14 A LEU 68 A LEU 22 A THR 112 A THR 66 A THR 115 A THR 69 A LYS 136 A LYS 90 A GLU 138 A GLU 92 B ILE 84 B ILE 38 B ILE 89 B ILE 43 B LYS 71 B LYS 25 B HIS 78 B HIS 32 B ILE 60 B ILE 14 B LEU 68 B LEU 22 B THR 112 B THR 66 B HIS 114 B HIS 68 B LYS 136 B LYS 90 B GLU 138 B GLU 92 1 P 1