0.019670
0.000000
0.000000
0.000000
0.014017
0.000000
0.000000
0.000000
0.010884
0.00000
0.00000
0.00000
Goldgur, Y.
Dyda, F.
Hickman, A.B.
Jenkins, T.M.
Craigie, R.
Davies, D.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
50.840
71.340
91.880
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 As O2 -1
136.989
CACODYLATE ION
dimethylarsinate
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
95
9150
9154
10.1073/pnas.95.16.9150
9689049
Three new structures of the core domain of HIV-1 integrase: an active site that binds magnesium.
1998
US
Science
SCIEAS
0038
0036-8075
266
1981
Crystal Structure of the Catalytic Domain of HIV-1 Integrase: Similarity to Other Polynucleotidyl Transferases
1994
10.2210/pdb1biz/pdb
pdb_00001biz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
95
1
MIRRORS
IMAGE PLATE
1997-11
RIGAKU
NI FILTER
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH2R
18178.695
HIV-1 INTEGRASE
CORE DOMAIN, RESIDUES 54 - 212
C56S, F185K
2
man
polymer
136.989
CACODYLATE ION
4
syn
non-polymer
18.015
water
212
nat
water
no
no
GSHMHGQVDSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTV
KAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIAT
DIQTKE
GSHMHGQVDSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTV
KAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIAT
DIQTKE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
Escherichia
Escherichia coli
sample
11676
Human immunodeficiency virus 1
469008
Escherichia coli BL21(DE3)
BL21
DE3
PET15B
1
2.29
43
7.0
PROTEIN WAS CRYSTALLIZED FROM 30% PEG 4000, 100 MM HEPES, PH 7.0, 5 MM DTT
database_2
pdbx_database_status
struct_conn
struct_ref_seq_dif
struct_site
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Database references
Derived calculations
Other
Refinement description
1
0
1998-08-19
1
1
2008-03-03
1
2
2011-07-13
1
3
2021-11-03
1
4
2023-08-02
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1998-06-21
REL
CAC
CACODYLATE ION
HOH
water
1ITG
PDB ENTRY 1ITG
PDB
experimental model
CAC
65
2
CAC
CAC
213
A
CAC
130
2
CAC
CAC
214
A
CAC
65
2
CAC
CAC
213
B
CAC
130
2
CAC
CAC
214
B
HOH
1001
3
HOH
HOH
1001
A
HOH
1004
3
HOH
HOH
1004
A
HOH
1005
3
HOH
HOH
1005
A
HOH
1006
3
HOH
HOH
1006
A
HOH
1007
3
HOH
HOH
1007
A
HOH
1008
3
HOH
HOH
1008
A
HOH
1009
3
HOH
HOH
1009
A
HOH
1010
3
HOH
HOH
1010
A
HOH
1011
3
HOH
HOH
1011
A
HOH
1025
3
HOH
HOH
1025
A
HOH
1026
3
HOH
HOH
1026
A
HOH
1027
3
HOH
HOH
1027
A
HOH
1028
3
HOH
HOH
1028
A
HOH
1029
3
HOH
HOH
1029
A
HOH
1030
3
HOH
HOH
1030
A
HOH
1031
3
HOH
HOH
1031
A
HOH
1032
3
HOH
HOH
1032
A
HOH
1033
3
HOH
HOH
1033
A
HOH
1034
3
HOH
HOH
1034
A
HOH
1035
3
HOH
HOH
1035
A
HOH
1036
3
HOH
HOH
1036
A
HOH
1037
3
HOH
HOH
1037
A
HOH
1038
3
HOH
HOH
1038
A
HOH
1040
3
HOH
HOH
1040
A
HOH
1041
3
HOH
HOH
1041
A
HOH
1042
3
HOH
HOH
1042
A
HOH
1043
3
HOH
HOH
1043
A
HOH
1044
3
HOH
HOH
1044
A
HOH
1045
3
HOH
HOH
1045
A
HOH
1046
3
HOH
HOH
1046
A
HOH
1047
3
HOH
HOH
1047
A
HOH
1048
3
HOH
HOH
1048
A
HOH
1049
3
HOH
HOH
1049
A
HOH
1050
3
HOH
HOH
1050
A
HOH
1051
3
HOH
HOH
1051
A
HOH
1054
3
HOH
HOH
1054
A
HOH
1056
3
HOH
HOH
1056
A
HOH
1057
3
HOH
HOH
1057
A
HOH
1059
3
HOH
HOH
1059
A
HOH
1065
3
HOH
HOH
1065
A
HOH
1066
3
HOH
HOH
1066
A
HOH
1067
3
HOH
HOH
1067
A
HOH
1088
3
HOH
HOH
1088
A
HOH
1093
3
HOH
HOH
1093
A
HOH
1094
3
HOH
HOH
1094
A
HOH
1095
3
HOH
HOH
1095
A
HOH
1098
3
HOH
HOH
1098
A
HOH
1099
3
HOH
HOH
1099
A
HOH
1100
3
HOH
HOH
1100
A
HOH
1101
3
HOH
HOH
1101
A
HOH
1102
3
HOH
HOH
1102
A
HOH
1122
3
HOH
HOH
1122
A
HOH
1123
3
HOH
HOH
1123
A
HOH
1124
3
HOH
HOH
1124
A
HOH
1125
3
HOH
HOH
1125
A
HOH
1126
3
HOH
HOH
1126
A
HOH
1295
3
HOH
HOH
1295
A
HOH
1297
3
HOH
HOH
1297
A
HOH
1431
3
HOH
HOH
1431
A
HOH
1432
3
HOH
HOH
1432
A
HOH
1436
3
HOH
HOH
1436
A
HOH
1442
3
HOH
HOH
1442
A
HOH
1450
3
HOH
HOH
1450
A
HOH
1451
3
HOH
HOH
1451
A
HOH
1452
3
HOH
HOH
1452
A
HOH
1454
3
HOH
HOH
1454
A
HOH
1457
3
HOH
HOH
1457
A
HOH
1459
3
HOH
HOH
1459
A
HOH
1460
3
HOH
HOH
1460
A
HOH
1463
3
HOH
HOH
1463
A
HOH
1490
3
HOH
HOH
1490
A
HOH
1491
3
HOH
HOH
1491
A
HOH
1492
3
HOH
HOH
1492
A
HOH
1493
3
HOH
HOH
1493
A
HOH
1496
3
HOH
HOH
1496
A
HOH
1508
3
HOH
HOH
1508
A
HOH
1523
3
HOH
HOH
1523
A
HOH
1529
3
HOH
HOH
1529
A
HOH
1594
3
HOH
HOH
1594
A
HOH
1596
3
HOH
HOH
1596
A
HOH
1599
3
HOH
HOH
1599
A
HOH
1600
3
HOH
HOH
1600
A
HOH
1601
3
HOH
HOH
1601
A
HOH
1603
3
HOH
HOH
1603
A
HOH
1604
3
HOH
HOH
1604
A
HOH
1619
3
HOH
HOH
1619
A
HOH
1620
3
HOH
HOH
1620
A
HOH
1621
3
HOH
HOH
1621
A
HOH
1624
3
HOH
HOH
1624
A
HOH
1626
3
HOH
HOH
1626
A
HOH
1627
3
HOH
HOH
1627
A
HOH
1665
3
HOH
HOH
1665
A
HOH
1676
3
HOH
HOH
1676
A
HOH
1677
3
HOH
HOH
1677
A
HOH
1750
3
HOH
HOH
1750
A
HOH
1002
3
HOH
HOH
1002
B
HOH
1003
3
HOH
HOH
1003
B
HOH
1012
3
HOH
HOH
1012
B
HOH
1013
3
HOH
HOH
1013
B
HOH
1014
3
HOH
HOH
1014
B
HOH
1015
3
HOH
HOH
1015
B
HOH
1016
3
HOH
HOH
1016
B
HOH
1017
3
HOH
HOH
1017
B
HOH
1018
3
HOH
HOH
1018
B
HOH
1019
3
HOH
HOH
1019
B
HOH
1020
3
HOH
HOH
1020
B
HOH
1021
3
HOH
HOH
1021
B
HOH
1022
3
HOH
HOH
1022
B
HOH
1023
3
HOH
HOH
1023
B
HOH
1024
3
HOH
HOH
1024
B
HOH
1039
3
HOH
HOH
1039
B
HOH
1052
3
HOH
HOH
1052
B
HOH
1053
3
HOH
HOH
1053
B
HOH
1055
3
HOH
HOH
1055
B
HOH
1058
3
HOH
HOH
1058
B
HOH
1060
3
HOH
HOH
1060
B
HOH
1061
3
HOH
HOH
1061
B
HOH
1062
3
HOH
HOH
1062
B
HOH
1063
3
HOH
HOH
1063
B
HOH
1064
3
HOH
HOH
1064
B
HOH
1068
3
HOH
HOH
1068
B
HOH
1069
3
HOH
HOH
1069
B
HOH
1070
3
HOH
HOH
1070
B
HOH
1071
3
HOH
HOH
1071
B
HOH
1072
3
HOH
HOH
1072
B
HOH
1073
3
HOH
HOH
1073
B
HOH
1074
3
HOH
HOH
1074
B
HOH
1075
3
HOH
HOH
1075
B
HOH
1076
3
HOH
HOH
1076
B
HOH
1077
3
HOH
HOH
1077
B
HOH
1078
3
HOH
HOH
1078
B
HOH
1079
3
HOH
HOH
1079
B
HOH
1080
3
HOH
HOH
1080
B
HOH
1081
3
HOH
HOH
1081
B
HOH
1082
3
HOH
HOH
1082
B
HOH
1083
3
HOH
HOH
1083
B
HOH
1084
3
HOH
HOH
1084
B
HOH
1085
3
HOH
HOH
1085
B
HOH
1086
3
HOH
HOH
1086
B
HOH
1087
3
HOH
HOH
1087
B
HOH
1089
3
HOH
HOH
1089
B
HOH
1090
3
HOH
HOH
1090
B
HOH
1091
3
HOH
HOH
1091
B
HOH
1092
3
HOH
HOH
1092
B
HOH
1096
3
HOH
HOH
1096
B
HOH
1097
3
HOH
HOH
1097
B
HOH
1103
3
HOH
HOH
1103
B
HOH
1104
3
HOH
HOH
1104
B
HOH
1105
3
HOH
HOH
1105
B
HOH
1106
3
HOH
HOH
1106
B
HOH
1107
3
HOH
HOH
1107
B
HOH
1108
3
HOH
HOH
1108
B
HOH
1109
3
HOH
HOH
1109
B
HOH
1110
3
HOH
HOH
1110
B
HOH
1111
3
HOH
HOH
1111
B
HOH
1112
3
HOH
HOH
1112
B
HOH
1113
3
HOH
HOH
1113
B
HOH
1114
3
HOH
HOH
1114
B
HOH
1115
3
HOH
HOH
1115
B
HOH
1116
3
HOH
HOH
1116
B
HOH
1117
3
HOH
HOH
1117
B
HOH
1118
3
HOH
HOH
1118
B
HOH
1119
3
HOH
HOH
1119
B
HOH
1120
3
HOH
HOH
1120
B
HOH
1121
3
HOH
HOH
1121
B
HOH
1127
3
HOH
HOH
1127
B
HOH
1128
3
HOH
HOH
1128
B
HOH
1129
3
HOH
HOH
1129
B
HOH
1248
3
HOH
HOH
1248
B
HOH
1252
3
HOH
HOH
1252
B
HOH
1253
3
HOH
HOH
1253
B
HOH
1256
3
HOH
HOH
1256
B
HOH
1272
3
HOH
HOH
1272
B
HOH
1273
3
HOH
HOH
1273
B
HOH
1278
3
HOH
HOH
1278
B
HOH
1279
3
HOH
HOH
1279
B
HOH
1280
3
HOH
HOH
1280
B
HOH
1282
3
HOH
HOH
1282
B
HOH
1285
3
HOH
HOH
1285
B
HOH
1294
3
HOH
HOH
1294
B
HOH
1438
3
HOH
HOH
1438
B
HOH
1445
3
HOH
HOH
1445
B
HOH
1446
3
HOH
HOH
1446
B
HOH
1447
3
HOH
HOH
1447
B
HOH
1449
3
HOH
HOH
1449
B
HOH
1453
3
HOH
HOH
1453
B
HOH
1503
3
HOH
HOH
1503
B
HOH
1504
3
HOH
HOH
1504
B
HOH
1505
3
HOH
HOH
1505
B
HOH
1506
3
HOH
HOH
1506
B
HOH
1510
3
HOH
HOH
1510
B
HOH
1513
3
HOH
HOH
1513
B
HOH
1516
3
HOH
HOH
1516
B
HOH
1520
3
HOH
HOH
1520
B
HOH
1522
3
HOH
HOH
1522
B
HOH
1533
3
HOH
HOH
1533
B
HOH
1534
3
HOH
HOH
1534
B
HOH
1535
3
HOH
HOH
1535
B
HOH
1536
3
HOH
HOH
1536
B
HOH
1542
3
HOH
HOH
1542
B
HOH
1548
3
HOH
HOH
1548
B
HOH
1567
3
HOH
HOH
1567
B
HOH
1568
3
HOH
HOH
1568
B
HOH
1571
3
HOH
HOH
1571
B
HOH
1572
3
HOH
HOH
1572
B
HOH
1593
3
HOH
HOH
1593
B
HOH
1595
3
HOH
HOH
1595
B
HOH
1622
3
HOH
HOH
1622
B
HOH
1631
3
HOH
HOH
1631
B
HOH
1633
3
HOH
HOH
1633
B
HOH
1678
3
HOH
HOH
1678
B
HOH
1796
3
HOH
HOH
1796
B
n
1
47
A
n
2
48
A
n
3
49
A
n
4
50
A
n
5
51
A
n
6
52
A
n
7
53
A
VAL
54
n
8
VAL
54
A
ASP
55
n
9
ASP
55
A
SER
56
n
10
SER
56
A
SER
57
n
11
SER
57
A
PRO
58
n
12
PRO
58
A
GLY
59
n
13
GLY
59
A
ILE
60
n
14
ILE
60
A
TRP
61
n
15
TRP
61
A
GLN
62
n
16
GLN
62
A
LEU
63
n
17
LEU
63
A
ASP
64
n
18
ASP
64
A
CYS
65
n
19
CYS
65
A
THR
66
n
20
THR
66
A
HIS
67
n
21
HIS
67
A
LEU
68
n
22
LEU
68
A
GLU
69
n
23
GLU
69
A
GLY
70
n
24
GLY
70
A
LYS
71
n
25
LYS
71
A
VAL
72
n
26
VAL
72
A
ILE
73
n
27
ILE
73
A
LEU
74
n
28
LEU
74
A
VAL
75
n
29
VAL
75
A
ALA
76
n
30
ALA
76
A
VAL
77
n
31
VAL
77
A
HIS
78
n
32
HIS
78
A
VAL
79
n
33
VAL
79
A
ALA
80
n
34
ALA
80
A
SER
81
n
35
SER
81
A
GLY
82
n
36
GLY
82
A
TYR
83
n
37
TYR
83
A
ILE
84
n
38
ILE
84
A
GLU
85
n
39
GLU
85
A
ALA
86
n
40
ALA
86
A
GLU
87
n
41
GLU
87
A
VAL
88
n
42
VAL
88
A
ILE
89
n
43
ILE
89
A
PRO
90
n
44
PRO
90
A
ALA
91
n
45
ALA
91
A
GLU
92
n
46
GLU
92
A
THR
93
n
47
THR
93
A
GLY
94
n
48
GLY
94
A
GLN
95
n
49
GLN
95
A
GLU
96
n
50
GLU
96
A
THR
97
n
51
THR
97
A
ALA
98
n
52
ALA
98
A
TYR
99
n
53
TYR
99
A
PHE
100
n
54
PHE
100
A
LEU
101
n
55
LEU
101
A
LEU
102
n
56
LEU
102
A
LYS
103
n
57
LYS
103
A
LEU
104
n
58
LEU
104
A
ALA
105
n
59
ALA
105
A
GLY
106
n
60
GLY
106
A
ARG
107
n
61
ARG
107
A
TRP
108
n
62
TRP
108
A
PRO
109
n
63
PRO
109
A
VAL
110
n
64
VAL
110
A
LYS
111
n
65
LYS
111
A
THR
112
n
66
THR
112
A
VAL
113
n
67
VAL
113
A
HIS
114
n
68
HIS
114
A
THR
115
n
69
THR
115
A
ASP
116
n
70
ASP
116
A
ASN
117
n
71
ASN
117
A
GLY
118
n
72
GLY
118
A
SER
119
n
73
SER
119
A
ASN
120
n
74
ASN
120
A
PHE
121
n
75
PHE
121
A
THR
122
n
76
THR
122
A
SER
123
n
77
SER
123
A
THR
124
n
78
THR
124
A
THR
125
n
79
THR
125
A
VAL
126
n
80
VAL
126
A
LYS
127
n
81
LYS
127
A
ALA
128
n
82
ALA
128
A
ALA
129
n
83
ALA
129
A
CYS
130
n
84
CYS
130
A
TRP
131
n
85
TRP
131
A
TRP
132
n
86
TRP
132
A
ALA
133
n
87
ALA
133
A
GLY
134
n
88
GLY
134
A
ILE
135
n
89
ILE
135
A
LYS
136
n
90
LYS
136
A
GLN
137
n
91
GLN
137
A
GLU
138
n
92
GLU
138
A
PHE
139
n
93
PHE
139
A
GLY
140
n
94
GLY
140
A
n
95
141
A
n
96
142
A
n
97
143
A
n
98
144
A
n
99
145
A
n
100
146
A
n
101
147
A
n
102
148
A
GLY
149
n
103
GLY
149
A
VAL
150
n
104
VAL
150
A
ILE
151
n
105
ILE
151
A
GLU
152
n
106
GLU
152
A
SER
153
n
107
SER
153
A
MET
154
n
108
MET
154
A
ASN
155
n
109
ASN
155
A
LYS
156
n
110
LYS
156
A
GLU
157
n
111
GLU
157
A
LEU
158
n
112
LEU
158
A
LYS
159
n
113
LYS
159
A
LYS
160
n
114
LYS
160
A
ILE
161
n
115
ILE
161
A
ILE
162
n
116
ILE
162
A
GLY
163
n
117
GLY
163
A
GLN
164
n
118
GLN
164
A
VAL
165
n
119
VAL
165
A
ARG
166
n
120
ARG
166
A
ASP
167
n
121
ASP
167
A
GLN
168
n
122
GLN
168
A
ALA
169
n
123
ALA
169
A
GLU
170
n
124
GLU
170
A
HIS
171
n
125
HIS
171
A
LEU
172
n
126
LEU
172
A
LYS
173
n
127
LYS
173
A
THR
174
n
128
THR
174
A
ALA
175
n
129
ALA
175
A
VAL
176
n
130
VAL
176
A
GLN
177
n
131
GLN
177
A
MET
178
n
132
MET
178
A
ALA
179
n
133
ALA
179
A
VAL
180
n
134
VAL
180
A
PHE
181
n
135
PHE
181
A
ILE
182
n
136
ILE
182
A
HIS
183
n
137
HIS
183
A
ASN
184
n
138
ASN
184
A
LYS
185
n
139
LYS
185
A
LYS
186
n
140
LYS
186
A
ARG
187
n
141
ARG
187
A
LYS
188
n
142
LYS
188
A
GLY
189
n
143
GLY
189
A
GLY
190
n
144
GLY
190
A
ILE
191
n
145
ILE
191
A
GLY
192
n
146
GLY
192
A
GLY
193
n
147
GLY
193
A
TYR
194
n
148
TYR
194
A
SER
195
n
149
SER
195
A
ALA
196
n
150
ALA
196
A
GLY
197
n
151
GLY
197
A
GLU
198
n
152
GLU
198
A
ARG
199
n
153
ARG
199
A
ILE
200
n
154
ILE
200
A
VAL
201
n
155
VAL
201
A
ASP
202
n
156
ASP
202
A
ILE
203
n
157
ILE
203
A
ILE
204
n
158
ILE
204
A
ALA
205
n
159
ALA
205
A
THR
206
n
160
THR
206
A
ASP
207
n
161
ASP
207
A
ILE
208
n
162
ILE
208
A
n
163
209
A
n
164
210
A
n
165
211
A
n
166
212
A
n
1
47
B
n
2
48
B
n
3
49
B
n
4
50
B
n
5
51
B
n
6
52
B
n
7
53
B
n
8
54
B
n
9
55
B
n
10
56
B
n
11
57
B
PRO
58
n
12
PRO
58
B
GLY
59
n
13
GLY
59
B
ILE
60
n
14
ILE
60
B
TRP
61
n
15
TRP
61
B
GLN
62
n
16
GLN
62
B
LEU
63
n
17
LEU
63
B
ASP
64
n
18
ASP
64
B
CYS
65
n
19
CYS
65
B
THR
66
n
20
THR
66
B
HIS
67
n
21
HIS
67
B
LEU
68
n
22
LEU
68
B
GLU
69
n
23
GLU
69
B
GLY
70
n
24
GLY
70
B
LYS
71
n
25
LYS
71
B
VAL
72
n
26
VAL
72
B
ILE
73
n
27
ILE
73
B
LEU
74
n
28
LEU
74
B
VAL
75
n
29
VAL
75
B
ALA
76
n
30
ALA
76
B
VAL
77
n
31
VAL
77
B
HIS
78
n
32
HIS
78
B
VAL
79
n
33
VAL
79
B
ALA
80
n
34
ALA
80
B
SER
81
n
35
SER
81
B
GLY
82
n
36
GLY
82
B
TYR
83
n
37
TYR
83
B
ILE
84
n
38
ILE
84
B
GLU
85
n
39
GLU
85
B
ALA
86
n
40
ALA
86
B
GLU
87
n
41
GLU
87
B
VAL
88
n
42
VAL
88
B
ILE
89
n
43
ILE
89
B
PRO
90
n
44
PRO
90
B
ALA
91
n
45
ALA
91
B
GLU
92
n
46
GLU
92
B
THR
93
n
47
THR
93
B
GLY
94
n
48
GLY
94
B
GLN
95
n
49
GLN
95
B
GLU
96
n
50
GLU
96
B
THR
97
n
51
THR
97
B
ALA
98
n
52
ALA
98
B
TYR
99
n
53
TYR
99
B
PHE
100
n
54
PHE
100
B
LEU
101
n
55
LEU
101
B
LEU
102
n
56
LEU
102
B
LYS
103
n
57
LYS
103
B
LEU
104
n
58
LEU
104
B
ALA
105
n
59
ALA
105
B
GLY
106
n
60
GLY
106
B
ARG
107
n
61
ARG
107
B
TRP
108
n
62
TRP
108
B
PRO
109
n
63
PRO
109
B
VAL
110
n
64
VAL
110
B
LYS
111
n
65
LYS
111
B
THR
112
n
66
THR
112
B
VAL
113
n
67
VAL
113
B
HIS
114
n
68
HIS
114
B
THR
115
n
69
THR
115
B
ASP
116
n
70
ASP
116
B
ASN
117
n
71
ASN
117
B
GLY
118
n
72
GLY
118
B
SER
119
n
73
SER
119
B
ASN
120
n
74
ASN
120
B
PHE
121
n
75
PHE
121
B
THR
122
n
76
THR
122
B
SER
123
n
77
SER
123
B
THR
124
n
78
THR
124
B
THR
125
n
79
THR
125
B
VAL
126
n
80
VAL
126
B
LYS
127
n
81
LYS
127
B
ALA
128
n
82
ALA
128
B
ALA
129
n
83
ALA
129
B
CYS
130
n
84
CYS
130
B
TRP
131
n
85
TRP
131
B
TRP
132
n
86
TRP
132
B
ALA
133
n
87
ALA
133
B
GLY
134
n
88
GLY
134
B
ILE
135
n
89
ILE
135
B
LYS
136
n
90
LYS
136
B
GLN
137
n
91
GLN
137
B
GLU
138
n
92
GLU
138
B
PHE
139
n
93
PHE
139
B
GLY
140
n
94
GLY
140
B
n
95
141
B
n
96
142
B
n
97
143
B
n
98
144
B
n
99
145
B
n
100
146
B
n
101
147
B
n
102
148
B
n
103
149
B
n
104
150
B
n
105
151
B
n
106
152
B
SER
153
n
107
SER
153
B
MET
154
n
108
MET
154
B
ASN
155
n
109
ASN
155
B
LYS
156
n
110
LYS
156
B
GLU
157
n
111
GLU
157
B
LEU
158
n
112
LEU
158
B
LYS
159
n
113
LYS
159
B
LYS
160
n
114
LYS
160
B
ILE
161
n
115
ILE
161
B
ILE
162
n
116
ILE
162
B
GLY
163
n
117
GLY
163
B
GLN
164
n
118
GLN
164
B
VAL
165
n
119
VAL
165
B
ARG
166
n
120
ARG
166
B
ASP
167
n
121
ASP
167
B
GLN
168
n
122
GLN
168
B
ALA
169
n
123
ALA
169
B
GLU
170
n
124
GLU
170
B
HIS
171
n
125
HIS
171
B
LEU
172
n
126
LEU
172
B
LYS
173
n
127
LYS
173
B
THR
174
n
128
THR
174
B
ALA
175
n
129
ALA
175
B
VAL
176
n
130
VAL
176
B
GLN
177
n
131
GLN
177
B
MET
178
n
132
MET
178
B
ALA
179
n
133
ALA
179
B
VAL
180
n
134
VAL
180
B
PHE
181
n
135
PHE
181
B
ILE
182
n
136
ILE
182
B
HIS
183
n
137
HIS
183
B
ASN
184
n
138
ASN
184
B
LYS
185
n
139
LYS
185
B
LYS
186
n
140
LYS
186
B
ARG
187
n
141
ARG
187
B
LYS
188
n
142
LYS
188
B
GLY
189
n
143
GLY
189
B
GLY
190
n
144
GLY
190
B
ILE
191
n
145
ILE
191
B
GLY
192
n
146
GLY
192
B
GLY
193
n
147
GLY
193
B
TYR
194
n
148
TYR
194
B
SER
195
n
149
SER
195
B
ALA
196
n
150
ALA
196
B
GLY
197
n
151
GLY
197
B
GLU
198
n
152
GLU
198
B
ARG
199
n
153
ARG
199
B
ILE
200
n
154
ILE
200
B
VAL
201
n
155
VAL
201
B
ASP
202
n
156
ASP
202
B
ILE
203
n
157
ILE
203
B
ILE
204
n
158
ILE
204
B
ALA
205
n
159
ALA
205
B
THR
206
n
160
THR
206
B
ASP
207
n
161
ASP
207
B
ILE
208
n
162
ILE
208
B
GLN
209
n
163
GLN
209
B
THR
210
n
164
THR
210
B
LYS
211
n
165
LYS
211
B
GLU
212
n
166
GLU
212
B
author_and_software_defined_assembly
PISA
2
dimeric
3410
-38
13660
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
112
A
O
THR
66
A
N
TRP
61
A
N
TRP
15
A
O
GLN
62
A
O
GLN
16
A
N
VAL
77
A
N
VAL
31
A
O
VAL
72
A
O
VAL
26
A
N
ILE
89
A
N
ILE
43
B
O
THR
112
B
O
THR
66
B
N
TRP
61
B
N
TRP
15
B
O
GLN
62
B
O
GLN
16
B
N
VAL
77
B
N
VAL
31
B
O
VAL
72
B
O
VAL
26
B
N
ILE
89
B
N
ILE
43
1
A
CG1
ILE
208
A
CG1
ILE
162
1
Y
1
A
CG2
ILE
208
A
CG2
ILE
162
1
Y
1
A
CD1
ILE
208
A
CD1
ILE
162
1
Y
1
B
CG
LYS
188
B
CG
LYS
142
1
Y
1
B
CD
LYS
188
B
CD
LYS
142
1
Y
1
B
CE
LYS
188
B
CE
LYS
142
1
Y
1
B
NZ
LYS
188
B
NZ
LYS
142
1
Y
1
B
CG1
ILE
191
B
CG1
ILE
145
1
Y
1
B
CG2
ILE
191
B
CG2
ILE
145
1
Y
1
B
CD1
ILE
191
B
CD1
ILE
145
1
Y
1
B
CG
TYR
194
B
CG
TYR
148
1
Y
1
B
CD1
TYR
194
B
CD1
TYR
148
1
Y
1
B
CD2
TYR
194
B
CD2
TYR
148
1
Y
1
B
CE1
TYR
194
B
CE1
TYR
148
1
Y
1
B
CE2
TYR
194
B
CE2
TYR
148
1
Y
1
B
CZ
TYR
194
B
CZ
TYR
148
1
Y
1
B
OH
TYR
194
B
OH
TYR
148
1
Y
1
B
CG
GLN
209
B
CG
GLN
163
1
Y
1
B
CD
GLN
209
B
CD
GLN
163
1
Y
1
B
OE1
GLN
209
B
OE1
GLN
163
1
Y
1
B
NE2
GLN
209
B
NE2
GLN
163
1
Y
1
A
GLY
47
A
GLY
1
1
Y
1
A
SER
48
A
SER
2
1
Y
1
A
HIS
49
A
HIS
3
1
Y
1
A
MET
50
A
MET
4
1
Y
1
A
HIS
51
A
HIS
5
1
Y
1
A
GLY
52
A
GLY
6
1
Y
1
A
GLN
53
A
GLN
7
1
Y
1
A
ILE
141
A
ILE
95
1
Y
1
A
PRO
142
A
PRO
96
1
Y
1
A
TYR
143
A
TYR
97
1
Y
1
A
ASN
144
A
ASN
98
1
Y
1
A
PRO
145
A
PRO
99
1
Y
1
A
GLN
146
A
GLN
100
1
Y
1
A
SER
147
A
SER
101
1
Y
1
A
GLN
148
A
GLN
102
1
Y
1
A
GLN
209
A
GLN
163
1
Y
1
A
THR
210
A
THR
164
1
Y
1
A
LYS
211
A
LYS
165
1
Y
1
A
GLU
212
A
GLU
166
1
Y
1
B
GLY
47
B
GLY
1
1
Y
1
B
SER
48
B
SER
2
1
Y
1
B
HIS
49
B
HIS
3
1
Y
1
B
MET
50
B
MET
4
1
Y
1
B
HIS
51
B
HIS
5
1
Y
1
B
GLY
52
B
GLY
6
1
Y
1
B
GLN
53
B
GLN
7
1
Y
1
B
VAL
54
B
VAL
8
1
Y
1
B
ASP
55
B
ASP
9
1
Y
1
B
SER
56
B
SER
10
1
Y
1
B
SER
57
B
SER
11
1
Y
1
B
ILE
141
B
ILE
95
1
Y
1
B
PRO
142
B
PRO
96
1
Y
1
B
TYR
143
B
TYR
97
1
Y
1
B
ASN
144
B
ASN
98
1
Y
1
B
PRO
145
B
PRO
99
1
Y
1
B
GLN
146
B
GLN
100
1
Y
1
B
SER
147
B
SER
101
1
Y
1
B
GLN
148
B
GLN
102
1
Y
1
B
GLY
149
B
GLY
103
1
Y
1
B
VAL
150
B
VAL
104
1
Y
1
B
ILE
151
B
ILE
105
1
Y
1
B
GLU
152
B
GLU
106
1
Y
1
A
SER
57
72.75
119.94
1
A
ASP
207
-77.44
30.70
PARHCSDX.PRO
TOPH19.SOL
PARAM19.SOL
TOPHCSDX.PRO
0.2530000
0.2120000
0.2120000
1.95
24917
93.8
RANDOM
10000000.0
0.001
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1ITG
1.95
212
2428
4
0
2212
0.028
2.490
2.1
88.4
2.0
1BIZ
20883
-3
0.0540000
1
2.0
92.3
0.2370000
2.0
2.1
1
88.4
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
X-PLOR
3.1
HIV-1 INTEGRASE CORE DOMAIN
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
GLY
94
A
GLY
48
HELX_P
A
ARG
107
A
ARG
61
1
1
14
A
GLY
118
A
GLY
72
HELX_P
A
PHE
121
A
PHE
75
5
2
4
A
THR
124
A
THR
78
HELX_P
A
ALA
133
A
ALA
87
1
3
10
A
VAL
150
A
VAL
104
HELX_P
A
GLN
168
A
GLN
122
1
4
19
A
LEU
172
A
LEU
126
HELX_P
A
LYS
185
A
LYS
139
1
5
14
A
ALA
196
A
ALA
150
HELX_P
A
THR
206
A
THR
160
1
6
11
B
GLY
94
B
GLY
48
HELX_P
B
ARG
107
B
ARG
61
1
7
14
B
GLY
118
B
GLY
72
HELX_P
B
PHE
121
B
PHE
75
5
8
4
B
THR
124
B
THR
78
HELX_P
B
TRP
132
B
TRP
86
1
9
9
B
SER
153
B
SER
107
HELX_P
B
GLN
168
B
GLN
122
1
10
16
B
LEU
172
B
LEU
126
HELX_P
B
LYS
185
B
LYS
139
1
11
14
B
ALA
196
B
ALA
150
HELX_P
B
THR
210
B
THR
164
1
12
15
metalc
2.231
A
CYS
65
A
SG
CYS
19
1_555
A
CAC
213
C
AS
CAC
1_555
metalc
2.195
A
CYS
130
A
SG
CYS
84
1_555
A
CAC
214
D
AS
CAC
1_555
metalc
2.448
B
CYS
65
B
SG
CYS
19
1_555
B
CAC
213
E
AS
CAC
1_555
metalc
2.031
B
CYS
130
B
SG
CYS
84
1_555
B
CAC
214
F
AS
CAC
1_555
DNA INTEGRATION
DNA INTEGRATION, INTEGRASE, HIV, HYDROLASE, ASPARTYL PROTEASE, ENDONUCLEASE
given
-0.456182
-0.889688
0.018811
-0.889882
0.456148
-0.006267
-0.003005
-0.019598
-0.999803
0.06050
0.02390
-0.22010
Q76353_9HIV1
UNP
1
1
Q76353
FFREDLAFPQGKAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALL
DTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVGQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPI
ETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQ
DFWEVQLGIPHPAGLKQKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMT
KILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIV
LPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGVYYDPSKDL
IAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMKGAHTNDVKQLTEAVQKIATESIVIWGKTPKFKLPIQKETWEAWWTEY
WQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLA
LQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDGLVSAGIRKVLFLDGI
DKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIE
AEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQV
RDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKG
EGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
762
927
1BIZ
47
212
Q76353
A
1
1
166
762
927
1BIZ
47
212
Q76353
B
1
1
166
1
GLU
conflict
SER
48
1BIZ
A
Q76353
UNP
763
2
1
ALA
conflict
HIS
49
1BIZ
A
Q76353
UNP
764
3
1
CYS
engineered mutation
SER
56
1BIZ
A
Q76353
UNP
771
10
1
PHE
engineered mutation
LYS
185
1BIZ
A
Q76353
UNP
900
139
2
GLU
conflict
SER
48
1BIZ
B
Q76353
UNP
763
2
2
ALA
conflict
HIS
49
1BIZ
B
Q76353
UNP
764
3
2
CYS
conflict
SER
56
1BIZ
B
Q76353
UNP
771
10
2
PHE
engineered mutation
LYS
185
1BIZ
B
Q76353
UNP
900
139
4
4
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
THR
112
A
THR
66
A
HIS
114
A
HIS
68
A
ILE
60
A
ILE
14
A
ASP
64
A
ASP
18
A
VAL
72
A
VAL
26
A
HIS
78
A
HIS
32
A
TYR
83
A
TYR
37
A
ILE
89
A
ILE
43
B
THR
112
B
THR
66
B
HIS
114
B
HIS
68
B
ILE
60
B
ILE
14
B
ASP
64
B
ASP
18
B
VAL
72
B
VAL
26
B
HIS
78
B
HIS
32
B
TYR
83
B
TYR
37
B
ILE
89
B
ILE
43
BINDING SITE FOR RESIDUE CAC A 213
A
CAC
213
Software
3
BINDING SITE FOR RESIDUE CAC A 214
A
CAC
214
Software
1
BINDING SITE FOR RESIDUE CAC B 213
B
CAC
213
Software
2
BINDING SITE FOR RESIDUE CAC B 214
B
CAC
214
Software
1
A
CYS
65
A
CYS
19
3
1_555
A
GLU
92
A
GLU
46
3
1_555
A
ASN
120
A
ASN
74
3
1_555
A
CYS
130
A
CYS
84
1
1_555
B
CYS
65
B
CYS
19
2
1_555
B
ASN
120
B
ASN
74
2
1_555
B
CYS
130
B
CYS
84
1
1_555
19
P 21 21 21