0.019670 0.000000 0.000000 0.000000 0.014017 0.000000 0.000000 0.000000 0.010884 0.00000 0.00000 0.00000 Goldgur, Y. Dyda, F. Hickman, A.B. Jenkins, T.M. Craigie, R. Davies, D.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 50.840 71.340 91.880 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H6 As O2 -1 136.989 CACODYLATE ION dimethylarsinate non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 95 9150 9154 10.1073/pnas.95.16.9150 9689049 Three new structures of the core domain of HIV-1 integrase: an active site that binds magnesium. 1998 US Science SCIEAS 0038 0036-8075 266 1981 Crystal Structure of the Catalytic Domain of HIV-1 Integrase: Similarity to Other Polynucleotidyl Transferases 1994 10.2210/pdb1biz/pdb pdb_00001biz 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 95 1 MIRRORS IMAGE PLATE 1997-11 RIGAKU NI FILTER M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH2R 18178.695 HIV-1 INTEGRASE CORE DOMAIN, RESIDUES 54 - 212 C56S, F185K 2 man polymer 136.989 CACODYLATE ION 4 syn non-polymer 18.015 water 212 nat water no no GSHMHGQVDSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTV KAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIAT DIQTKE GSHMHGQVDSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTV KAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIAT DIQTKE A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia Escherichia coli sample 11676 Human immunodeficiency virus 1 469008 Escherichia coli BL21(DE3) BL21 DE3 PET15B 1 2.29 43 7.0 PROTEIN WAS CRYSTALLIZED FROM 30% PEG 4000, 100 MM HEPES, PH 7.0, 5 MM DTT database_2 pdbx_database_status struct_conn struct_ref_seq_dif struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Non-polymer description Version format compliance Database references Derived calculations Other Refinement description 1 0 1998-08-19 1 1 2008-03-03 1 2 2011-07-13 1 3 2021-11-03 1 4 2023-08-02 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1998-06-21 REL CAC CACODYLATE ION HOH water 1ITG PDB ENTRY 1ITG PDB experimental model CAC 65 2 CAC CAC 213 A CAC 130 2 CAC CAC 214 A CAC 65 2 CAC CAC 213 B CAC 130 2 CAC CAC 214 B HOH 1001 3 HOH HOH 1001 A HOH 1004 3 HOH HOH 1004 A HOH 1005 3 HOH HOH 1005 A HOH 1006 3 HOH HOH 1006 A HOH 1007 3 HOH HOH 1007 A HOH 1008 3 HOH HOH 1008 A HOH 1009 3 HOH HOH 1009 A HOH 1010 3 HOH HOH 1010 A HOH 1011 3 HOH HOH 1011 A HOH 1025 3 HOH HOH 1025 A HOH 1026 3 HOH HOH 1026 A HOH 1027 3 HOH HOH 1027 A HOH 1028 3 HOH HOH 1028 A HOH 1029 3 HOH HOH 1029 A HOH 1030 3 HOH HOH 1030 A HOH 1031 3 HOH HOH 1031 A HOH 1032 3 HOH HOH 1032 A HOH 1033 3 HOH HOH 1033 A HOH 1034 3 HOH HOH 1034 A HOH 1035 3 HOH HOH 1035 A HOH 1036 3 HOH HOH 1036 A HOH 1037 3 HOH HOH 1037 A HOH 1038 3 HOH HOH 1038 A HOH 1040 3 HOH HOH 1040 A HOH 1041 3 HOH HOH 1041 A HOH 1042 3 HOH HOH 1042 A HOH 1043 3 HOH HOH 1043 A HOH 1044 3 HOH HOH 1044 A HOH 1045 3 HOH HOH 1045 A HOH 1046 3 HOH HOH 1046 A HOH 1047 3 HOH HOH 1047 A HOH 1048 3 HOH HOH 1048 A HOH 1049 3 HOH HOH 1049 A HOH 1050 3 HOH HOH 1050 A HOH 1051 3 HOH HOH 1051 A HOH 1054 3 HOH HOH 1054 A HOH 1056 3 HOH HOH 1056 A HOH 1057 3 HOH HOH 1057 A HOH 1059 3 HOH HOH 1059 A HOH 1065 3 HOH HOH 1065 A HOH 1066 3 HOH HOH 1066 A HOH 1067 3 HOH HOH 1067 A HOH 1088 3 HOH HOH 1088 A HOH 1093 3 HOH HOH 1093 A HOH 1094 3 HOH HOH 1094 A HOH 1095 3 HOH HOH 1095 A HOH 1098 3 HOH HOH 1098 A HOH 1099 3 HOH HOH 1099 A HOH 1100 3 HOH HOH 1100 A HOH 1101 3 HOH HOH 1101 A HOH 1102 3 HOH HOH 1102 A HOH 1122 3 HOH HOH 1122 A HOH 1123 3 HOH HOH 1123 A HOH 1124 3 HOH HOH 1124 A HOH 1125 3 HOH HOH 1125 A HOH 1126 3 HOH HOH 1126 A HOH 1295 3 HOH HOH 1295 A HOH 1297 3 HOH HOH 1297 A HOH 1431 3 HOH HOH 1431 A HOH 1432 3 HOH HOH 1432 A HOH 1436 3 HOH HOH 1436 A HOH 1442 3 HOH HOH 1442 A HOH 1450 3 HOH HOH 1450 A HOH 1451 3 HOH HOH 1451 A HOH 1452 3 HOH HOH 1452 A HOH 1454 3 HOH HOH 1454 A HOH 1457 3 HOH HOH 1457 A HOH 1459 3 HOH HOH 1459 A HOH 1460 3 HOH HOH 1460 A HOH 1463 3 HOH HOH 1463 A HOH 1490 3 HOH HOH 1490 A HOH 1491 3 HOH HOH 1491 A HOH 1492 3 HOH HOH 1492 A HOH 1493 3 HOH HOH 1493 A HOH 1496 3 HOH HOH 1496 A HOH 1508 3 HOH HOH 1508 A HOH 1523 3 HOH HOH 1523 A HOH 1529 3 HOH HOH 1529 A HOH 1594 3 HOH HOH 1594 A HOH 1596 3 HOH HOH 1596 A HOH 1599 3 HOH HOH 1599 A HOH 1600 3 HOH HOH 1600 A HOH 1601 3 HOH HOH 1601 A HOH 1603 3 HOH HOH 1603 A HOH 1604 3 HOH HOH 1604 A HOH 1619 3 HOH HOH 1619 A HOH 1620 3 HOH HOH 1620 A HOH 1621 3 HOH HOH 1621 A HOH 1624 3 HOH HOH 1624 A HOH 1626 3 HOH HOH 1626 A HOH 1627 3 HOH HOH 1627 A HOH 1665 3 HOH HOH 1665 A HOH 1676 3 HOH HOH 1676 A HOH 1677 3 HOH HOH 1677 A HOH 1750 3 HOH HOH 1750 A HOH 1002 3 HOH HOH 1002 B HOH 1003 3 HOH HOH 1003 B HOH 1012 3 HOH HOH 1012 B HOH 1013 3 HOH HOH 1013 B HOH 1014 3 HOH HOH 1014 B HOH 1015 3 HOH HOH 1015 B HOH 1016 3 HOH HOH 1016 B HOH 1017 3 HOH HOH 1017 B HOH 1018 3 HOH HOH 1018 B HOH 1019 3 HOH HOH 1019 B HOH 1020 3 HOH HOH 1020 B HOH 1021 3 HOH HOH 1021 B HOH 1022 3 HOH HOH 1022 B HOH 1023 3 HOH HOH 1023 B HOH 1024 3 HOH HOH 1024 B HOH 1039 3 HOH HOH 1039 B HOH 1052 3 HOH HOH 1052 B HOH 1053 3 HOH HOH 1053 B HOH 1055 3 HOH HOH 1055 B HOH 1058 3 HOH HOH 1058 B HOH 1060 3 HOH HOH 1060 B HOH 1061 3 HOH HOH 1061 B HOH 1062 3 HOH HOH 1062 B HOH 1063 3 HOH HOH 1063 B HOH 1064 3 HOH HOH 1064 B HOH 1068 3 HOH HOH 1068 B HOH 1069 3 HOH HOH 1069 B HOH 1070 3 HOH HOH 1070 B HOH 1071 3 HOH HOH 1071 B HOH 1072 3 HOH HOH 1072 B HOH 1073 3 HOH HOH 1073 B HOH 1074 3 HOH HOH 1074 B HOH 1075 3 HOH HOH 1075 B HOH 1076 3 HOH HOH 1076 B HOH 1077 3 HOH HOH 1077 B HOH 1078 3 HOH HOH 1078 B HOH 1079 3 HOH HOH 1079 B HOH 1080 3 HOH HOH 1080 B HOH 1081 3 HOH HOH 1081 B HOH 1082 3 HOH HOH 1082 B HOH 1083 3 HOH HOH 1083 B HOH 1084 3 HOH HOH 1084 B HOH 1085 3 HOH HOH 1085 B HOH 1086 3 HOH HOH 1086 B HOH 1087 3 HOH HOH 1087 B HOH 1089 3 HOH HOH 1089 B HOH 1090 3 HOH HOH 1090 B HOH 1091 3 HOH HOH 1091 B HOH 1092 3 HOH HOH 1092 B HOH 1096 3 HOH HOH 1096 B HOH 1097 3 HOH HOH 1097 B HOH 1103 3 HOH HOH 1103 B HOH 1104 3 HOH HOH 1104 B HOH 1105 3 HOH HOH 1105 B HOH 1106 3 HOH HOH 1106 B HOH 1107 3 HOH HOH 1107 B HOH 1108 3 HOH HOH 1108 B HOH 1109 3 HOH HOH 1109 B HOH 1110 3 HOH HOH 1110 B HOH 1111 3 HOH HOH 1111 B HOH 1112 3 HOH HOH 1112 B HOH 1113 3 HOH HOH 1113 B HOH 1114 3 HOH HOH 1114 B HOH 1115 3 HOH HOH 1115 B HOH 1116 3 HOH HOH 1116 B HOH 1117 3 HOH HOH 1117 B HOH 1118 3 HOH HOH 1118 B HOH 1119 3 HOH HOH 1119 B HOH 1120 3 HOH HOH 1120 B HOH 1121 3 HOH HOH 1121 B HOH 1127 3 HOH HOH 1127 B HOH 1128 3 HOH HOH 1128 B HOH 1129 3 HOH HOH 1129 B HOH 1248 3 HOH HOH 1248 B HOH 1252 3 HOH HOH 1252 B HOH 1253 3 HOH HOH 1253 B HOH 1256 3 HOH HOH 1256 B HOH 1272 3 HOH HOH 1272 B HOH 1273 3 HOH HOH 1273 B HOH 1278 3 HOH HOH 1278 B HOH 1279 3 HOH HOH 1279 B HOH 1280 3 HOH HOH 1280 B HOH 1282 3 HOH HOH 1282 B HOH 1285 3 HOH HOH 1285 B HOH 1294 3 HOH HOH 1294 B HOH 1438 3 HOH HOH 1438 B HOH 1445 3 HOH HOH 1445 B HOH 1446 3 HOH HOH 1446 B HOH 1447 3 HOH HOH 1447 B HOH 1449 3 HOH HOH 1449 B HOH 1453 3 HOH HOH 1453 B HOH 1503 3 HOH HOH 1503 B HOH 1504 3 HOH HOH 1504 B HOH 1505 3 HOH HOH 1505 B HOH 1506 3 HOH HOH 1506 B HOH 1510 3 HOH HOH 1510 B HOH 1513 3 HOH HOH 1513 B HOH 1516 3 HOH HOH 1516 B HOH 1520 3 HOH HOH 1520 B HOH 1522 3 HOH HOH 1522 B HOH 1533 3 HOH HOH 1533 B HOH 1534 3 HOH HOH 1534 B HOH 1535 3 HOH HOH 1535 B HOH 1536 3 HOH HOH 1536 B HOH 1542 3 HOH HOH 1542 B HOH 1548 3 HOH HOH 1548 B HOH 1567 3 HOH HOH 1567 B HOH 1568 3 HOH HOH 1568 B HOH 1571 3 HOH HOH 1571 B HOH 1572 3 HOH HOH 1572 B HOH 1593 3 HOH HOH 1593 B HOH 1595 3 HOH HOH 1595 B HOH 1622 3 HOH HOH 1622 B HOH 1631 3 HOH HOH 1631 B HOH 1633 3 HOH HOH 1633 B HOH 1678 3 HOH HOH 1678 B HOH 1796 3 HOH HOH 1796 B n 1 47 A n 2 48 A n 3 49 A n 4 50 A n 5 51 A n 6 52 A n 7 53 A VAL 54 n 8 VAL 54 A ASP 55 n 9 ASP 55 A SER 56 n 10 SER 56 A SER 57 n 11 SER 57 A PRO 58 n 12 PRO 58 A GLY 59 n 13 GLY 59 A ILE 60 n 14 ILE 60 A TRP 61 n 15 TRP 61 A GLN 62 n 16 GLN 62 A LEU 63 n 17 LEU 63 A ASP 64 n 18 ASP 64 A CYS 65 n 19 CYS 65 A THR 66 n 20 THR 66 A HIS 67 n 21 HIS 67 A LEU 68 n 22 LEU 68 A GLU 69 n 23 GLU 69 A GLY 70 n 24 GLY 70 A LYS 71 n 25 LYS 71 A VAL 72 n 26 VAL 72 A ILE 73 n 27 ILE 73 A LEU 74 n 28 LEU 74 A VAL 75 n 29 VAL 75 A ALA 76 n 30 ALA 76 A VAL 77 n 31 VAL 77 A HIS 78 n 32 HIS 78 A VAL 79 n 33 VAL 79 A ALA 80 n 34 ALA 80 A SER 81 n 35 SER 81 A GLY 82 n 36 GLY 82 A TYR 83 n 37 TYR 83 A ILE 84 n 38 ILE 84 A GLU 85 n 39 GLU 85 A ALA 86 n 40 ALA 86 A GLU 87 n 41 GLU 87 A VAL 88 n 42 VAL 88 A ILE 89 n 43 ILE 89 A PRO 90 n 44 PRO 90 A ALA 91 n 45 ALA 91 A GLU 92 n 46 GLU 92 A THR 93 n 47 THR 93 A GLY 94 n 48 GLY 94 A GLN 95 n 49 GLN 95 A GLU 96 n 50 GLU 96 A THR 97 n 51 THR 97 A ALA 98 n 52 ALA 98 A TYR 99 n 53 TYR 99 A PHE 100 n 54 PHE 100 A LEU 101 n 55 LEU 101 A LEU 102 n 56 LEU 102 A LYS 103 n 57 LYS 103 A LEU 104 n 58 LEU 104 A ALA 105 n 59 ALA 105 A GLY 106 n 60 GLY 106 A ARG 107 n 61 ARG 107 A TRP 108 n 62 TRP 108 A PRO 109 n 63 PRO 109 A VAL 110 n 64 VAL 110 A LYS 111 n 65 LYS 111 A THR 112 n 66 THR 112 A VAL 113 n 67 VAL 113 A HIS 114 n 68 HIS 114 A THR 115 n 69 THR 115 A ASP 116 n 70 ASP 116 A ASN 117 n 71 ASN 117 A GLY 118 n 72 GLY 118 A SER 119 n 73 SER 119 A ASN 120 n 74 ASN 120 A PHE 121 n 75 PHE 121 A THR 122 n 76 THR 122 A SER 123 n 77 SER 123 A THR 124 n 78 THR 124 A THR 125 n 79 THR 125 A VAL 126 n 80 VAL 126 A LYS 127 n 81 LYS 127 A ALA 128 n 82 ALA 128 A ALA 129 n 83 ALA 129 A CYS 130 n 84 CYS 130 A TRP 131 n 85 TRP 131 A TRP 132 n 86 TRP 132 A ALA 133 n 87 ALA 133 A GLY 134 n 88 GLY 134 A ILE 135 n 89 ILE 135 A LYS 136 n 90 LYS 136 A GLN 137 n 91 GLN 137 A GLU 138 n 92 GLU 138 A PHE 139 n 93 PHE 139 A GLY 140 n 94 GLY 140 A n 95 141 A n 96 142 A n 97 143 A n 98 144 A n 99 145 A n 100 146 A n 101 147 A n 102 148 A GLY 149 n 103 GLY 149 A VAL 150 n 104 VAL 150 A ILE 151 n 105 ILE 151 A GLU 152 n 106 GLU 152 A SER 153 n 107 SER 153 A MET 154 n 108 MET 154 A ASN 155 n 109 ASN 155 A LYS 156 n 110 LYS 156 A GLU 157 n 111 GLU 157 A LEU 158 n 112 LEU 158 A LYS 159 n 113 LYS 159 A LYS 160 n 114 LYS 160 A ILE 161 n 115 ILE 161 A ILE 162 n 116 ILE 162 A GLY 163 n 117 GLY 163 A GLN 164 n 118 GLN 164 A VAL 165 n 119 VAL 165 A ARG 166 n 120 ARG 166 A ASP 167 n 121 ASP 167 A GLN 168 n 122 GLN 168 A ALA 169 n 123 ALA 169 A GLU 170 n 124 GLU 170 A HIS 171 n 125 HIS 171 A LEU 172 n 126 LEU 172 A LYS 173 n 127 LYS 173 A THR 174 n 128 THR 174 A ALA 175 n 129 ALA 175 A VAL 176 n 130 VAL 176 A GLN 177 n 131 GLN 177 A MET 178 n 132 MET 178 A ALA 179 n 133 ALA 179 A VAL 180 n 134 VAL 180 A PHE 181 n 135 PHE 181 A ILE 182 n 136 ILE 182 A HIS 183 n 137 HIS 183 A ASN 184 n 138 ASN 184 A LYS 185 n 139 LYS 185 A LYS 186 n 140 LYS 186 A ARG 187 n 141 ARG 187 A LYS 188 n 142 LYS 188 A GLY 189 n 143 GLY 189 A GLY 190 n 144 GLY 190 A ILE 191 n 145 ILE 191 A GLY 192 n 146 GLY 192 A GLY 193 n 147 GLY 193 A TYR 194 n 148 TYR 194 A SER 195 n 149 SER 195 A ALA 196 n 150 ALA 196 A GLY 197 n 151 GLY 197 A GLU 198 n 152 GLU 198 A ARG 199 n 153 ARG 199 A ILE 200 n 154 ILE 200 A VAL 201 n 155 VAL 201 A ASP 202 n 156 ASP 202 A ILE 203 n 157 ILE 203 A ILE 204 n 158 ILE 204 A ALA 205 n 159 ALA 205 A THR 206 n 160 THR 206 A ASP 207 n 161 ASP 207 A ILE 208 n 162 ILE 208 A n 163 209 A n 164 210 A n 165 211 A n 166 212 A n 1 47 B n 2 48 B n 3 49 B n 4 50 B n 5 51 B n 6 52 B n 7 53 B n 8 54 B n 9 55 B n 10 56 B n 11 57 B PRO 58 n 12 PRO 58 B GLY 59 n 13 GLY 59 B ILE 60 n 14 ILE 60 B TRP 61 n 15 TRP 61 B GLN 62 n 16 GLN 62 B LEU 63 n 17 LEU 63 B ASP 64 n 18 ASP 64 B CYS 65 n 19 CYS 65 B THR 66 n 20 THR 66 B HIS 67 n 21 HIS 67 B LEU 68 n 22 LEU 68 B GLU 69 n 23 GLU 69 B GLY 70 n 24 GLY 70 B LYS 71 n 25 LYS 71 B VAL 72 n 26 VAL 72 B ILE 73 n 27 ILE 73 B LEU 74 n 28 LEU 74 B VAL 75 n 29 VAL 75 B ALA 76 n 30 ALA 76 B VAL 77 n 31 VAL 77 B HIS 78 n 32 HIS 78 B VAL 79 n 33 VAL 79 B ALA 80 n 34 ALA 80 B SER 81 n 35 SER 81 B GLY 82 n 36 GLY 82 B TYR 83 n 37 TYR 83 B ILE 84 n 38 ILE 84 B GLU 85 n 39 GLU 85 B ALA 86 n 40 ALA 86 B GLU 87 n 41 GLU 87 B VAL 88 n 42 VAL 88 B ILE 89 n 43 ILE 89 B PRO 90 n 44 PRO 90 B ALA 91 n 45 ALA 91 B GLU 92 n 46 GLU 92 B THR 93 n 47 THR 93 B GLY 94 n 48 GLY 94 B GLN 95 n 49 GLN 95 B GLU 96 n 50 GLU 96 B THR 97 n 51 THR 97 B ALA 98 n 52 ALA 98 B TYR 99 n 53 TYR 99 B PHE 100 n 54 PHE 100 B LEU 101 n 55 LEU 101 B LEU 102 n 56 LEU 102 B LYS 103 n 57 LYS 103 B LEU 104 n 58 LEU 104 B ALA 105 n 59 ALA 105 B GLY 106 n 60 GLY 106 B ARG 107 n 61 ARG 107 B TRP 108 n 62 TRP 108 B PRO 109 n 63 PRO 109 B VAL 110 n 64 VAL 110 B LYS 111 n 65 LYS 111 B THR 112 n 66 THR 112 B VAL 113 n 67 VAL 113 B HIS 114 n 68 HIS 114 B THR 115 n 69 THR 115 B ASP 116 n 70 ASP 116 B ASN 117 n 71 ASN 117 B GLY 118 n 72 GLY 118 B SER 119 n 73 SER 119 B ASN 120 n 74 ASN 120 B PHE 121 n 75 PHE 121 B THR 122 n 76 THR 122 B SER 123 n 77 SER 123 B THR 124 n 78 THR 124 B THR 125 n 79 THR 125 B VAL 126 n 80 VAL 126 B LYS 127 n 81 LYS 127 B ALA 128 n 82 ALA 128 B ALA 129 n 83 ALA 129 B CYS 130 n 84 CYS 130 B TRP 131 n 85 TRP 131 B TRP 132 n 86 TRP 132 B ALA 133 n 87 ALA 133 B GLY 134 n 88 GLY 134 B ILE 135 n 89 ILE 135 B LYS 136 n 90 LYS 136 B GLN 137 n 91 GLN 137 B GLU 138 n 92 GLU 138 B PHE 139 n 93 PHE 139 B GLY 140 n 94 GLY 140 B n 95 141 B n 96 142 B n 97 143 B n 98 144 B n 99 145 B n 100 146 B n 101 147 B n 102 148 B n 103 149 B n 104 150 B n 105 151 B n 106 152 B SER 153 n 107 SER 153 B MET 154 n 108 MET 154 B ASN 155 n 109 ASN 155 B LYS 156 n 110 LYS 156 B GLU 157 n 111 GLU 157 B LEU 158 n 112 LEU 158 B LYS 159 n 113 LYS 159 B LYS 160 n 114 LYS 160 B ILE 161 n 115 ILE 161 B ILE 162 n 116 ILE 162 B GLY 163 n 117 GLY 163 B GLN 164 n 118 GLN 164 B VAL 165 n 119 VAL 165 B ARG 166 n 120 ARG 166 B ASP 167 n 121 ASP 167 B GLN 168 n 122 GLN 168 B ALA 169 n 123 ALA 169 B GLU 170 n 124 GLU 170 B HIS 171 n 125 HIS 171 B LEU 172 n 126 LEU 172 B LYS 173 n 127 LYS 173 B THR 174 n 128 THR 174 B ALA 175 n 129 ALA 175 B VAL 176 n 130 VAL 176 B GLN 177 n 131 GLN 177 B MET 178 n 132 MET 178 B ALA 179 n 133 ALA 179 B VAL 180 n 134 VAL 180 B PHE 181 n 135 PHE 181 B ILE 182 n 136 ILE 182 B HIS 183 n 137 HIS 183 B ASN 184 n 138 ASN 184 B LYS 185 n 139 LYS 185 B LYS 186 n 140 LYS 186 B ARG 187 n 141 ARG 187 B LYS 188 n 142 LYS 188 B GLY 189 n 143 GLY 189 B GLY 190 n 144 GLY 190 B ILE 191 n 145 ILE 191 B GLY 192 n 146 GLY 192 B GLY 193 n 147 GLY 193 B TYR 194 n 148 TYR 194 B SER 195 n 149 SER 195 B ALA 196 n 150 ALA 196 B GLY 197 n 151 GLY 197 B GLU 198 n 152 GLU 198 B ARG 199 n 153 ARG 199 B ILE 200 n 154 ILE 200 B VAL 201 n 155 VAL 201 B ASP 202 n 156 ASP 202 B ILE 203 n 157 ILE 203 B ILE 204 n 158 ILE 204 B ALA 205 n 159 ALA 205 B THR 206 n 160 THR 206 B ASP 207 n 161 ASP 207 B ILE 208 n 162 ILE 208 B GLN 209 n 163 GLN 209 B THR 210 n 164 THR 210 B LYS 211 n 165 LYS 211 B GLU 212 n 166 GLU 212 B author_and_software_defined_assembly PISA 2 dimeric 3410 -38 13660 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O THR 112 A O THR 66 A N TRP 61 A N TRP 15 A O GLN 62 A O GLN 16 A N VAL 77 A N VAL 31 A O VAL 72 A O VAL 26 A N ILE 89 A N ILE 43 B O THR 112 B O THR 66 B N TRP 61 B N TRP 15 B O GLN 62 B O GLN 16 B N VAL 77 B N VAL 31 B O VAL 72 B O VAL 26 B N ILE 89 B N ILE 43 1 A CG1 ILE 208 A CG1 ILE 162 1 Y 1 A CG2 ILE 208 A CG2 ILE 162 1 Y 1 A CD1 ILE 208 A CD1 ILE 162 1 Y 1 B CG LYS 188 B CG LYS 142 1 Y 1 B CD LYS 188 B CD LYS 142 1 Y 1 B CE LYS 188 B CE LYS 142 1 Y 1 B NZ LYS 188 B NZ LYS 142 1 Y 1 B CG1 ILE 191 B CG1 ILE 145 1 Y 1 B CG2 ILE 191 B CG2 ILE 145 1 Y 1 B CD1 ILE 191 B CD1 ILE 145 1 Y 1 B CG TYR 194 B CG TYR 148 1 Y 1 B CD1 TYR 194 B CD1 TYR 148 1 Y 1 B CD2 TYR 194 B CD2 TYR 148 1 Y 1 B CE1 TYR 194 B CE1 TYR 148 1 Y 1 B CE2 TYR 194 B CE2 TYR 148 1 Y 1 B CZ TYR 194 B CZ TYR 148 1 Y 1 B OH TYR 194 B OH TYR 148 1 Y 1 B CG GLN 209 B CG GLN 163 1 Y 1 B CD GLN 209 B CD GLN 163 1 Y 1 B OE1 GLN 209 B OE1 GLN 163 1 Y 1 B NE2 GLN 209 B NE2 GLN 163 1 Y 1 A GLY 47 A GLY 1 1 Y 1 A SER 48 A SER 2 1 Y 1 A HIS 49 A HIS 3 1 Y 1 A MET 50 A MET 4 1 Y 1 A HIS 51 A HIS 5 1 Y 1 A GLY 52 A GLY 6 1 Y 1 A GLN 53 A GLN 7 1 Y 1 A ILE 141 A ILE 95 1 Y 1 A PRO 142 A PRO 96 1 Y 1 A TYR 143 A TYR 97 1 Y 1 A ASN 144 A ASN 98 1 Y 1 A PRO 145 A PRO 99 1 Y 1 A GLN 146 A GLN 100 1 Y 1 A SER 147 A SER 101 1 Y 1 A GLN 148 A GLN 102 1 Y 1 A GLN 209 A GLN 163 1 Y 1 A THR 210 A THR 164 1 Y 1 A LYS 211 A LYS 165 1 Y 1 A GLU 212 A GLU 166 1 Y 1 B GLY 47 B GLY 1 1 Y 1 B SER 48 B SER 2 1 Y 1 B HIS 49 B HIS 3 1 Y 1 B MET 50 B MET 4 1 Y 1 B HIS 51 B HIS 5 1 Y 1 B GLY 52 B GLY 6 1 Y 1 B GLN 53 B GLN 7 1 Y 1 B VAL 54 B VAL 8 1 Y 1 B ASP 55 B ASP 9 1 Y 1 B SER 56 B SER 10 1 Y 1 B SER 57 B SER 11 1 Y 1 B ILE 141 B ILE 95 1 Y 1 B PRO 142 B PRO 96 1 Y 1 B TYR 143 B TYR 97 1 Y 1 B ASN 144 B ASN 98 1 Y 1 B PRO 145 B PRO 99 1 Y 1 B GLN 146 B GLN 100 1 Y 1 B SER 147 B SER 101 1 Y 1 B GLN 148 B GLN 102 1 Y 1 B GLY 149 B GLY 103 1 Y 1 B VAL 150 B VAL 104 1 Y 1 B ILE 151 B ILE 105 1 Y 1 B GLU 152 B GLU 106 1 Y 1 A SER 57 72.75 119.94 1 A ASP 207 -77.44 30.70 PARHCSDX.PRO TOPH19.SOL PARAM19.SOL TOPHCSDX.PRO 0.2530000 0.2120000 0.2120000 1.95 24917 93.8 RANDOM 10000000.0 0.001 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1ITG 1.95 212 2428 4 0 2212 0.028 2.490 2.1 88.4 2.0 1BIZ 20883 -3 0.0540000 1 2.0 92.3 0.2370000 2.0 2.1 1 88.4 model building X-PLOR 3.1 refinement X-PLOR 3.1 data reduction DENZO data scaling SCALEPACK phasing X-PLOR 3.1 HIV-1 INTEGRASE CORE DOMAIN 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N A GLY 94 A GLY 48 HELX_P A ARG 107 A ARG 61 1 1 14 A GLY 118 A GLY 72 HELX_P A PHE 121 A PHE 75 5 2 4 A THR 124 A THR 78 HELX_P A ALA 133 A ALA 87 1 3 10 A VAL 150 A VAL 104 HELX_P A GLN 168 A GLN 122 1 4 19 A LEU 172 A LEU 126 HELX_P A LYS 185 A LYS 139 1 5 14 A ALA 196 A ALA 150 HELX_P A THR 206 A THR 160 1 6 11 B GLY 94 B GLY 48 HELX_P B ARG 107 B ARG 61 1 7 14 B GLY 118 B GLY 72 HELX_P B PHE 121 B PHE 75 5 8 4 B THR 124 B THR 78 HELX_P B TRP 132 B TRP 86 1 9 9 B SER 153 B SER 107 HELX_P B GLN 168 B GLN 122 1 10 16 B LEU 172 B LEU 126 HELX_P B LYS 185 B LYS 139 1 11 14 B ALA 196 B ALA 150 HELX_P B THR 210 B THR 164 1 12 15 metalc 2.231 A CYS 65 A SG CYS 19 1_555 A CAC 213 C AS CAC 1_555 metalc 2.195 A CYS 130 A SG CYS 84 1_555 A CAC 214 D AS CAC 1_555 metalc 2.448 B CYS 65 B SG CYS 19 1_555 B CAC 213 E AS CAC 1_555 metalc 2.031 B CYS 130 B SG CYS 84 1_555 B CAC 214 F AS CAC 1_555 DNA INTEGRATION DNA INTEGRATION, INTEGRASE, HIV, HYDROLASE, ASPARTYL PROTEASE, ENDONUCLEASE given -0.456182 -0.889688 0.018811 -0.889882 0.456148 -0.006267 -0.003005 -0.019598 -0.999803 0.06050 0.02390 -0.22010 Q76353_9HIV1 UNP 1 1 Q76353 FFREDLAFPQGKAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALL DTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVGQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPI ETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQ DFWEVQLGIPHPAGLKQKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMT KILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIV LPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGVYYDPSKDL IAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMKGAHTNDVKQLTEAVQKIATESIVIWGKTPKFKLPIQKETWEAWWTEY WQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLA LQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDGLVSAGIRKVLFLDGI DKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIE AEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQV RDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKG EGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED 762 927 1BIZ 47 212 Q76353 A 1 1 166 762 927 1BIZ 47 212 Q76353 B 1 1 166 1 GLU conflict SER 48 1BIZ A Q76353 UNP 763 2 1 ALA conflict HIS 49 1BIZ A Q76353 UNP 764 3 1 CYS engineered mutation SER 56 1BIZ A Q76353 UNP 771 10 1 PHE engineered mutation LYS 185 1BIZ A Q76353 UNP 900 139 2 GLU conflict SER 48 1BIZ B Q76353 UNP 763 2 2 ALA conflict HIS 49 1BIZ B Q76353 UNP 764 3 2 CYS conflict SER 56 1BIZ B Q76353 UNP 771 10 2 PHE engineered mutation LYS 185 1BIZ B Q76353 UNP 900 139 4 4 parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A THR 112 A THR 66 A HIS 114 A HIS 68 A ILE 60 A ILE 14 A ASP 64 A ASP 18 A VAL 72 A VAL 26 A HIS 78 A HIS 32 A TYR 83 A TYR 37 A ILE 89 A ILE 43 B THR 112 B THR 66 B HIS 114 B HIS 68 B ILE 60 B ILE 14 B ASP 64 B ASP 18 B VAL 72 B VAL 26 B HIS 78 B HIS 32 B TYR 83 B TYR 37 B ILE 89 B ILE 43 BINDING SITE FOR RESIDUE CAC A 213 A CAC 213 Software 3 BINDING SITE FOR RESIDUE CAC A 214 A CAC 214 Software 1 BINDING SITE FOR RESIDUE CAC B 213 B CAC 213 Software 2 BINDING SITE FOR RESIDUE CAC B 214 B CAC 214 Software 1 A CYS 65 A CYS 19 3 1_555 A GLU 92 A GLU 46 3 1_555 A ASN 120 A ASN 74 3 1_555 A CYS 130 A CYS 84 1 1_555 B CYS 65 B CYS 19 2 1_555 B ASN 120 B ASN 74 2 1_555 B CYS 130 B CYS 84 1 1_555 19 P 21 21 21